SMED30016392

Overview
NameSMED30016392
Smed IDSMED30016392
Length (bp)1085
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016392 (SMED30016392) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016392 (SMED30016392) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30016392

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Category 3 cellSMED30016392SMESG000059904.1 SMESG000042945.1 SMESG000007620.1 SMESG000072638.1 SMESG000039380.1 SMESG000042352.1 SMESG000028417.1 dd_Smed_v6_10138_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016392 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.007783:5773..6881 +4028
v31.003763:29430..30474 +3947
v31.021723:3666..4708 -3669
v31.028837:2744..3787 -3641
v31.004575:28021..34342 -3398
v31.000065:109355..110887 +2809
v31.007979:16399..17299 +2555
v31.028845:3045..3944 +2544
v31.000188:69053..69952 -2543
v31.009954:19655..20554 -2536
v31.000472:42162..43062 +2535
v31.010902:14705..15605 -2533
v31.003526:36058..36957 +2533
v31.017345:5771..6670 -2524
v31.014204:11289..12217 +2522
v31.002968:10284..11192 -2521
v31.031447:3407..4307 +2520
v31.029034:5151..6050 -2519
v31.018792:5640..6568 -2519
v31.000640:24038..24945 -2519
v31.012445:10434..11342 -2518
v31.003828:11886..12813 -2518
v31.001366:20288..21204 +2514
v31.004835:45616..46515 +2511
v31.008498:40728..41656 -2510
v31.008498:11253..12181 -2510
v31.003729:39358..40255 -2507
v31.012607:2056..2956 +2506
v31.003942:52895..53822 -2504
v31.020056:9931..10831 +2503
v31.004231:40748..41658 -2502
v31.008729:7999..8906 +2501
v31.007465:4225..5133 +2501
v31.004701:22575..23475 +2500
v31.000191:14770..15669 +2500
v31.013498:5812..6721 -2495
v31.000306:177178..178078 -2494
v31.012867:5855..6763 -2493
v31.012681:12014..12936 -2492
v31.000826:120071..120988 -2490
v31.000135:39856..40755 -2489
v31.014719:1489..2398 +2487
v31.004925:37470..38374 -2487
v31.014907:2089..3005 -2486
v31.003409:4788..5687 -2486
v31.007231:15454..16363 -2485
v31.001520:83426..84333 -2478
v31.000134:87295..88216 +2478
v31.000396:103373..104298 +2476
v31.033907:467..1375 +2475
v31.000117:43596..44496 +2475
v31.000078:37886..38814 +2472
v31.028218:3451..4367 -2470
v31.004926:42815..43714 -2470
v31.000853:17944..18853 -2469
v31.000304:69845..70745 +2467
v31.006139:3538..4423 +2465
v31.004660:33734..34639 +2462
v31.000285:46172..47072 -2460
v31.010677:17096..18015 -2458
v31.000956:41121..42047 +2458
v31.000189:141365..142273 -2458
v31.031901:635..1550 -2457
v31.001405:119729..120654 -2451
v31.003272:15751..16650 -2447
v31.002887:49928..50846 +2442
v31.012391:3317..4229 +2441
v31.001811:44634..45535 +2441
v31.001023:58730..59645 +2440
v31.015694:9527..10447 -2439
v31.000573:138180..139104 +2439
v31.000110:186595..187503 +2435
v31.005470:4134..5060 +2434
v31.000213:164289..165217 +2431
v31.004448:37730..38656 -2430
v31.014850:9909..10829 +2429
v31.003464:46903..47822 +2427
v31.000133:109729..110645 -2427
v31.007277:31106..32024 +2424
v31.003219:34538..35460 +2420
v31.000046:109917..110845 -2420
v31.002539:28590..29490 +2419
v31.011223:2178..5443 -2417
v31.002242:3046..3964 +2415
v31.001865:53932..54844 -2415
v31.021666:6443..7354 -2413
v31.001750:58924..59824 -2413
v31.000364:83600..84512 +2413
v31.002142:87740..88660 +2411
v31.007277:3666..4596 +2410
v31.000012:231109..232033 +2409
v31.000065:105161..106068 +2407
v31.020450:3314..4239 -2405
v31.002126:65669..66595 -2405
v31.012297:10797..11716 -2404
v31.001209:93343..94243 +2404
v31.001039:111518..112437 +2402
v31.001246:9564..10492 +2398
v31.016740:1125..2025 +2397
v31.000065:142278..143185 +2397
v31.010321:9418..10318 -2394
v31.001381:106896..107824 -2394
v31.021037:2789..3718 -2391
v31.004647:43968..44894 -2390
v31.002625:3927..4806 -2389
v31.001981:60575..61475 +2387
v31.003631:26591..27489 -2385
v31.001037:64337..65237 +2383
v31.009413:27679..28579 -2382
v31.007236:13516..14426 +2379
v31.000094:203235..204153 -2379
v31.000594:71467..72366 +2377
v31.004574:41526..42423 -2376
v31.013702:11492..12411 +2374
v31.000015:375304..376204 +2370
v31.013506:680..1578 -2367
v31.000038:226929..227860 +2364
v31.000166:45705..46631 -2363
v31.013153:8182..9111 -2358
v31.005446:2717..3615 +2358
v31.022979:7911..8838 -2356
v31.000138:104568..105499 +2355
v31.007385:8810..9724 -2354
v31.008684:324..1235 +2353
v31.000255:48233..49151 +2352
v31.006579:6709..7609 -2349
v31.012918:1493..2407 -2344
v31.001568:71161..72060 +2344
v31.003637:7456..8348 +2342
v31.001150:51830..52730 +2342
v31.000836:91980..92880 -2340
v31.000808:45231..46131 -2340
v31.000674:101899..102796 -2337
v31.001180:11565..12463 -2334
v31.025002:7180..8077 +2333
v31.017391:3543..4471 -2332
v31.003804:17043..17940 -2330
v31.007422:9180..10090 +2329
v31.001756:50175..51106 +2323
v31.015719:314..1211 +2310
v31.010444:17376..18269 -2310
v31.024842:8092..8992 -2308
v31.014273:9253..10153 -2306
v31.005918:8705..9602 -2301
v31.001471:24117..25017 -2295
v31.000149:126670..127581 -2288
v31.000478:106628..107528 +2270
v31.016907:11538..12434 -2177
v31.003024:11806..12679 -2144
Homology
BLAST of SMED30016392 vs. Planmine SMEST
Match: SMESG000042945.1 (SMESG000042945.1)

HSP 1 Score: 159.844 bits (403), Expect = 8.393e-73
Identity = 80/103 (77.67%), Postives = 85/103 (82.52%), Query Frame = 1
Query:  478 QMNPNYHIPKLPKSKVNIVTQPSVQNDNHLLCQQRYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            +M+P Y IPK  +      +  S    NH LCQQ+YNKL AEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR
Sbjct:  108 KMHPGYKIPKSSRK-----SDTSALQLNHDLCQQKYNKLLAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 205          

HSP 2 Score: 133.265 bits (334), Expect = 8.393e-73
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNXXXXXXXXAEGLTIXXXXXXXXXXXXXXXXXXHPEFVKEDDPAPTPKRSTESVLPTHAKETDE 1084
            DLALKLNLIPA HLPETTQAGPAQTPRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFVK+DDPAPTPKRSTE VLP H KETDE
Sbjct:  210 DLALKLNLIPAGHLPETTQAGPAQTPRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFVKDDDPAPTPKRSTEPVLPIHVKETDE 309          
BLAST of SMED30016392 vs. Planmine SMEST
Match: SMESG000059904.1 (SMESG000059904.1)

HSP 1 Score: 152.14 bits (383), Expect = 1.049e-66
Identity = 84/133 (63.16%), Postives = 94/133 (70.68%), Query Frame = 1
Query:  406 IFFV*FLHSENVKKLVFIHSQENRQMNPNYHIPKLPKSKVNIVTQPS-VQND-----NHLLCQQRYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            +    F  +E  K++          + P  HIP+  K++V     P  V+N      NH  CQQ+YNKLFAEHERTLGTWFAPEAVKILQDKIH LSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR
Sbjct:   48 VLIASFTKAELTKRIAGRDLAVKLNLIPPTHIPE--KNEVGQAKPPKPVKNATPLQLNHDFCQQKYNKLFAEHERTLGTWFAPEAVKILQDKIHELSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 178          

HSP 2 Score: 120.939 bits (302), Expect = 1.049e-66
Identity = 90/100 (90.00%), Postives = 92/100 (92.00%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNXXXXXXXXAEGLTIXXXXXXXXXXXXXXXXXXHPEFVKEDDPAPTPKRSTESVLPTHAKETDE 1084
            DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFVK+DD   T KRS E +LP H KETDE
Sbjct:  183 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFVKKDDTTLTLKRSKEHMLPIHVKETDE 282          

HSP 3 Score: 72.4034 bits (176), Expect = 3.126e-17
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  637 EAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            E VK L  +IHRL+R R+DLI+ENRAQRIIINDQ  VL+ASFT+AEL KR
Sbjct:   12 EFVKALHQQIHRLTRYRDDLISENRAQRIIINDQIPVLIASFTKAELTKR 61          

HSP 4 Score: 34.6538 bits (78), Expect = 3.126e-17
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHP 886
            DLA+KLNLIP  H+PE  + G A+ P+  K   P
Sbjct:   66 DLAVKLNLIPPTHIPEKNEVGQAKPPKPVKNATP 99          
BLAST of SMED30016392 vs. Planmine SMEST
Match: SMESG000072638.1 (SMESG000072638.1)

HSP 1 Score: 150.984 bits (380), Expect = 3.180e-66
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 1
Query:  505 KLPKSKVNIVTQPSVQNDNHLLCQQRYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            K+PKS     +  S    +H LCQ++YNKL AEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR
Sbjct:  195 KIPKSSRK--SDTSASQLDHDLCQRKYNKLLAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 286          

HSP 2 Score: 120.553 bits (301), Expect = 3.180e-66
Identity = 88/100 (88.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNXXXXXXXXAEGLTIXXXXXXXXXXXXXXXXXXHPEFVKEDDPAPTPKRSTESVLPTHAKETDE 1084
            DLALKLNLIPANHLPE  QAGPAQ PRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFV EDDPA  PK STE V+P   KETDE
Sbjct:  291 DLALKLNLIPANHLPEIAQAGPAQIPRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVAEQHPEFVTEDDPASNPKGSTELVIPIQVKETDE 390          
BLAST of SMED30016392 vs. Planmine SMEST
Match: SMESG000039380.1 (SMESG000039380.1)

HSP 1 Score: 154.836 bits (390), Expect = 6.649e-65
Identity = 78/102 (76.47%), Postives = 83/102 (81.37%), Query Frame = 1
Query:  481 MNPNYHIPKLPKSKVNIVTQPSVQNDNHLLCQQRYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            M+  Y IPK  +      +  S    +H LCQQ+YNKL AEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR
Sbjct:    1 MHSGYKIPKSSRK-----SDTSALQLDHDLCQQKYNKLLAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 97          

HSP 2 Score: 112.464 bits (280), Expect = 6.649e-65
Identity = 86/100 (86.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNXXXXXXXXAEGLTIXXXXXXXXXXXXXXXXXXHPEFVKEDDPAPTPKRSTESVLPTHAKETDE 1084
            DLALKLNLIPA+HLPE TQAGPAQT RTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALV EQHPEFV ED PA  PK STE V+P   KETDE
Sbjct:  102 DLALKLNLIPASHLPEPTQAGPAQTLRTSKKHHPSKNRRRRERRRAEGLTILNNAAQVLEEAAALVTEQHPEFVTEDVPASNPKGSTELVMPIQVKETDE 201          
BLAST of SMED30016392 vs. Planmine SMEST
Match: SMESG000028417.1 (SMESG000028417.1)

HSP 1 Score: 156.377 bits (394), Expect = 4.258e-61
Identity = 79/102 (77.45%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  481 MNPNYHIPKLPKSKVNIVTQPSVQNDNHLLCQQRYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELVKR 786
            M P Y IPKL      I TQ      +H  CQQ+YNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSA LVASFTE EL KR
Sbjct:    1 MQPGYKIPKLSSKPSAINTQM-----DHSSCQQKYNKLFAEHERTLGTWFAPEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSADLVASFTEVELTKR 97          

HSP 2 Score: 97.8265 bits (242), Expect = 4.258e-61
Identity = 75/100 (75.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:  785 DLALKLNLIPANHLPETTQAGPAQTPRTSKKHHPSKNXXXXXXXXAEGLTIXXXXXXXXXXXXXXXXXXHPEFVKEDDPAPTPKRSTESVLPTHAKETDE 1084
            DL +KLNLIP NHLPE TQAGPAQTPRTSKKHHPSKN RRRERRRAEGLT+L+NAAQVLEEAA LVAEQHP+FVK D+   T  +S E+     A ETDE
Sbjct:  102 DLVVKLNLIPVNHLPEETQAGPAQTPRTSKKHHPSKNCRRRERRRAEGLTLLSNAAQVLEEAAMLVAEQHPQFVKSDENPQTTAKSEENATLISADETDE 201          
The following BLAST results are available for this feature:
BLAST of SMED30016392 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016392 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000042945.18.393e-7377.67SMESG000042945.1[more]
SMESG000059904.11.049e-6663.16SMESG000059904.1[more]
SMESG000072638.13.180e-6680.85SMESG000072638.1[more]
SMESG000039380.16.649e-6576.47SMESG000039380.1[more]
SMESG000028417.14.258e-6177.45SMESG000028417.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016392 ID=SMED30016392|Name=SMED30016392|organism=Schmidtea mediterranea sexual|type=transcript|length=1085bp
TTCGAATGAATGTTTAAGTAGGAATATTTATATTTTTCAAAACCTATCGA
GTTTTTAGATTAACGGGAACGACTAGGGATAAGTATAAGAACCAGTAATT
GTATCATTAGAATGCAAATCAGATCGGATAAACGATGCTTTATAAGATCG
TAATGAACGAACATGAGTTTGAAAATTGATTGCAAGTCGAATAATGACCG
GAGCATCGGTATTTAATTCATTTTTCATTTCTGTCCACAAAAGTTTGACC
ATCATTAGATTTACCGCAAATGCCGATATTTAACAATACCACGACGACCG
ATACTAATGGAAAGATTGATGATGAATGAGATTAAAATTTTGTTTGTTTG
TTAATTATTATGTTTATTATATTTAATTTATGATTATAAAATTCACGATA
AGAAAATTTTCTTCGTTTAGTTTCTTCATTCCGAAAACGTTAAAAAACTC
GTTTTCATCCATAGCCAAGAAAATCGTCAAATGAATCCAAATTATCATAT
CCCTAAATTACCGAAATCTAAAGTAAACATAGTCACTCAGCCCAGCGTCC
AGAACGACAATCACCTTCTATGCCAACAAAGATATAATAAACTCTTTGCG
GAGCACGAACGCACTCTCGGCACGTGGTTCGCTCCCGAAGCGGTCAAAAT
CCTCCAGGATAAAATCCACCGGCTGTCTAGATGCCGAGAGGATTTAATTG
CAGAGAACCGGGCTCAGCGAATCATAATCAACGACCAAAGCGCCGTCTTG
GTAGCATCATTTACGGAAGCCGAACTGGTAAAACGATCTGGCATTAAAGT
TGAATTTGATCCCCGCGAACCATCTTCCGGAAACAACTCAAGCTGGTCCA
GCTCAGACACCCAGGACCAGCAAGAAGCACCATCCCAGCAAAAATCGTCG
TCGCCGTGAACGACGCCGAGCTGAAGGCCTCACAATTTTAAACAATGCTG
CACAAGTGCTCGAAGAAGCCGCCGCACTCGTCGCAGAACAGCACCCAGAA
TTTGTGAAAGAAGATGACCCCGCTCCAACCCCGAAAAGATCAACAGAATC
GGTGCTACCAACTCATGCGAAGGAAACTGATGAGG
back to top

protein sequence of SMED30016392-orf-1

>SMED30016392-orf-1 ID=SMED30016392-orf-1|Name=SMED30016392-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp
MNPNYHIPKLPKSKVNIVTQPSVQNDNHLLCQQRYNKLFAEHERTLGTWF
APEAVKILQDKIHRLSRCREDLIAENRAQRIIINDQSAVLVASFTEAELV
KRSGIKVEFDPREPSSGNNSSWSSSDTQDQQEAPSQQKSSSP*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000035Category 3 cell