Zinc finger MYM-type protein 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016372 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Zebrafish
Match: CR762475.1 (pep chromosome:GRCz11:4:55494751:55498830:1 gene:ENSDARG00000098243.2 transcript:ENSDART00000172605.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR762475.1) HSP 1 Score: 61.6178 bits (148), Expect = 1.199e-17 Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 93 LENDKSSKVSYMPLDIENKSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*KD-GLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKK 473 L +++S M L +SK+ NEIK A+ F I+ D T D+SH +Q+S VVR+V+ +EV E FL L+ + +D GL++ R Q YD A MSG++ G+Q+ I+A N+K Sbjct: 374 LLSNRSQNDIIMSLGTFIRSKIQNEIKEAQIFSILLDETTDVSHKEQVSFVVRYVR----DMEVKERFLQVCTLESTTGKELENVVISLLQDNGLDLKNIRGQGYDGAANMSGMYKGLQSRIRAHNEK 497 HSP 2 Score: 34.2686 bits (77), Expect = 1.199e-17 Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 1 Query: 1 EREGLTNKGNFLELLKLLSKYDVVLKEHI 87 E N+GNF+EL+K L++YD V+K H+ Sbjct: 329 ESSSSANQGNFIELVKTLAQYDSVMKLHL 357 HSP 3 Score: 31.5722 bits (70), Expect = 1.199e-17 Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2 Query: 548 ISFFGTVESIFTFCSASTSRWQMFIK 625 ++FF VE ++ FC+ ST R F+K Sbjct: 523 VTFFSLVEKLYVFCTGSTKRHTAFLK 548
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Xenopus
Match: ENSXETT00000043220.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:7:36411169:36451375:1 gene:ENSXETG00000018966.1 transcript:ENSXETT00000043220.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 62.003 bits (149), Expect = 1.559e-16 Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 156 LVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLP-LKRKSR*SK**NS*KA*KDGL-----NIIMYRSQRYDNVALMSGVHVGVQAIIKAKN 467 ++NE K AKY+ I DSTPD+SH DQ++ ++ +VK D E F+ F+P + K+ N A D L +I+ R Q YDN + MSG + G+QA IK N Sbjct: 238 IINEAKQAKYYSISVDSTPDVSHTDQLAFIICYVKNDGIPK---ERFIKFIPNVGHKAE-----NLFSAVMDTLKEYHIDILDCRGQSYDNASNMSGPYSGLQARIKQVN 339 HSP 2 Score: 31.9574 bits (71), Expect = 1.559e-16 Identity = 12/28 (42.86%), Postives = 20/28 (71.43%), Query Frame = 2 Query: 545 CISFFGTVESIFTFCSASTSRWQMFIKH 628 +SFF ++ ++ F SAS++RW+M I H Sbjct: 366 AVSFFCILQQLYHFFSASSTRWEMLISH 393 HSP 3 Score: 28.1054 bits (61), Expect = 1.559e-16 Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 1 Query: 1 EREGLTNKGNFLELLKLLSKYDVVLKEHI 87 E+ G GN+L LL+ ++++D L EHI Sbjct: 176 EKFGSLTNGNYLMLLEAIAEHDPFLAEHI 204 HSP 4 Score: 21.557 bits (44), Expect = 1.559e-16 Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 1 Query: 454 LKQKTKKEVFVACIDHSINL 513 +KQ V++ C HS+NL Sbjct: 335 IKQVNPLAVYIPCSAHSLNL 354
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A212FKU0 (Putative zinc finger MYM domain containing 1 OS=Danaus plexippus plexippus OX=278856 GN=KGM_213716 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.257e-31 Identity = 70/116 (60.34%), Postives = 81/116 (69.83%), Query Frame = 3 Query: 135 DIENKSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRK------SR*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAK 464 D + S+LVNEIK AKYFGIMFDSTPD SH+DQ+SEV+R+VKI KVEV EVFLGF PL K + K K DGL+I+M RSQ YDN A+MS +H GVQAIIK K Sbjct: 159 DSRHLSQLVNEIKSAKYFGIMFDSTPDCSHIDQMSEVIRYVKIYNRKVEVKEVFLGFFPLHEKKAADLSAEILK-----KLENDGLDIMMCRSQGYDNAAVMSDIHGGVQAIIKEK 269
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A0B7BQI5 (DUF4371 domain-containing protein OS=Arion vulgaris OX=1028688 GN=ORF200722 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.296e-30 Identity = 68/113 (60.18%), Postives = 80/113 (70.80%), Query Frame = 3 Query: 147 KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*K-DGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 K LVN IK A+YFGIMFDSTPDISH DQ+SEV+R+VKI +VEV EVFLGF LK K + K + DGL+I+M R+Q YDN MSG+H GVQAI+K KNKK F Sbjct: 97 KEILVNYIKAARYFGIMFDSTPDISHTDQMSEVIRYVKIHNGEVEVREVFLGFFHLKGKKADDLSSDILKNLESDGLDIMMCRAQGYDNAVTMSGIHGGVQAILKRKNKKAIF 209 HSP 2 Score: 63.5438 bits (153), Expect = 3.054e-10 Identity = 69/211 (32.70%), Postives = 106/211 (50.24%), Query Frame = 1 Query: 19 NKGNFLELLKLLSKYDVVLKEHILIWRMINHQKYHTCR*I*KINLNLSTKLNWQNILVSCLIAHPIFHMLIKYLK-------WFDL*KLI---NEKSKS*KYS-------------LDFYP*K-ERADDLSDEILKKLER-MV*IL*CIVL---NVMIM*LL*AAYM*EYKPLLKQKTKKEVFVACIDHSINLGSQPSFAQIILYIIFWNS 567 NKGNFLE++++LSKYD VLKEH++ R+ K T + LS + QN ++ L H + +L+ Y+K FD I ++ S+ +Y L F+ K ++ADDLS +ILK LE + I+ C N + M + + +LK+K KK +F C+DHS+NL Q SFA+ L + F+ + Sbjct: 40 NKGNFLEMVEMLSKYDPVLKEHLM--RL----KRTTSVTVKASAYYLSPET--QNEFITVLANH-VKEILVNYIKAARYFGIMFDSTPDISHTDQMSEVIRYVKIHNGEVEVREVFLGFFHLKGKKADDLSSDILKNLESDGLDIMMCRAQGYDNAVTM----SGIHGGVQAILKRKNKKAIFNGCVDHSLNLCGQHSFAENALCVTFFGT 237 HSP 3 Score: 29.261 bits (64), Expect = 3.054e-10 Identity = 10/19 (52.63%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 545 CISFFGTVESIFTFCSAST 601 C++FFGT+E +++F +AST Sbjct: 231 CVTFFGTLERMYSFFAAST 249
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A1B6DAI5 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.510 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.314e-28 Identity = 61/145 (42.07%), Postives = 82/145 (56.55%), Query Frame = 3 Query: 111 SKVSYMPLDIEN----------KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*K-----------DGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 + V+Y+ I+N K ++ EI+ AKY+GI+FDSTPDIS DQ+SEV+R+V I KV++ E FLGF L+ K KA + DGL+I + RSQ YDN A M+G+H GVQA I+ N K F Sbjct: 377 ATVTYLSPQIQNEFILLLGMTVKDVIIKEIREAKYYGILFDSTPDISRKDQMSEVIRYVHIQDGKVQIKESFLGFFVLQGK----------KADEVTEEILTALESDGLDIALCRSQGYDNAATMAGIHSGVQARIQNINPKALF 511 HSP 2 Score: 40.4318 bits (93), Expect = 2.314e-28 Identity = 17/24 (70.83%), Postives = 23/24 (95.83%), Query Frame = 1 Query: 19 NKGNFLELLKLLSKYDVVLKEHIL 90 N+GNFLEL++LLS+YD VL+EHI+ Sbjct: 343 NRGNFLELVQLLSQYDPVLREHII 366 HSP 3 Score: 34.2686 bits (77), Expect = 2.314e-28 Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = 2 Query: 542 SCISFFGTVESIFTFCSASTSRWQMF 619 S ++FFGT+E+I+ SAST RW++ Sbjct: 532 SSLTFFGTLENIYNLFSASTHRWEIL 557
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A087UAK3 (Zinc finger MYM-type protein 1 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_19461 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-26 Identity = 59/148 (39.86%), Postives = 83/148 (56.08%), Query Frame = 3 Query: 117 VSYMPLDIEN----------KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR-------*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF-CCMY*SFN 506 +SY+ I+N + ++++IK AKYF I+FDSTPDISH DQ S+++R+V ID +V+V+E F+GF+ K K+ +K N +GL+I R Q YDN A+M+G H GVQ IK N F C S N Sbjct: 230 ISYLSPKIQNEFIELLGGAVRKTIMDQIKQAKYFCIIFDSTPDISHKDQNSQIIRYVVIDGSEVKVVESFIGFVETKGKTAGEITDMILTKLDN------NGLDIKNCRGQTYDNAAVMAGKHSGVQTRIKEINPNAEFVACTNHSLN 371 HSP 2 Score: 42.3578 bits (98), Expect = 1.263e-26 Identity = 18/34 (52.94%), Postives = 27/34 (79.41%), Query Frame = 1 Query: 7 EGLTNKGNFLELLKLLSKYDVVLKEHILIWRMIN 108 + + N+GNFLEL+ LL+KYD VL+EH++ +M N Sbjct: 193 DSMENRGNFLELVDLLAKYDPVLREHVVKIKMGN 226 HSP 3 Score: 35.4242 bits (80), Expect = 1.263e-26 Identity = 12/28 (42.86%), Postives = 21/28 (75.00%), Query Frame = 2 Query: 539 LSCISFFGTVESIFTFCSASTSRWQMFI 622 ++ I+FFGT+E +F+ S+ST RW + + Sbjct: 382 INSITFFGTIEQLFSLFSSSTHRWNVLL 409
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Match: A0A4C1SXH1 (DUF4371 domain-containing protein OS=Eumeta variegata OX=151549 GN=EVAR_92782_1 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.359e-26 Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 132 LDIENKSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRK------SR*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSG 428 LD+ + KLVNEIK AKYFGIMFDSTPD+SHVD +SEV+R+VKI+ KVEV EVFLGF PL K + K K DGL+I+M RSQ YDN A+MS Sbjct: 127 LDMVQRLKLVNEIKSAKYFGIMFDSTPDVSHVDHMSEVIRYVKINNRKVEVKEVFLGFFPLHGKKAADLSAEILK-----KLENDGLDIMMCRSQDYDNAAVMSA 226
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000035531.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000029.1:6285841:6288423:1 gene:ENSAMXG00000041958.1 transcript:ENSAMXT00000035531.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.2478 bits (173), Expect = 3.438e-20 Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 3 Query: 147 KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*KD-GLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKN 467 K +VN+IK +KYF ++ DSTPD++HVDQ + + RFV D V+E FL F P++ S S ++ GL++ R Q YDN + MSG + GVQA +K +N Sbjct: 365 KQAIVNKIKESKYFSVIVDSTPDLAHVDQPTFIFRFVNND---AHVVERFLAFEPIENHSGDSLAECVVAMVENLGLDLSNCRGQSYDNASNMSGKYNGVQAHLKQRN 469 HSP 2 Score: 31.5722 bits (70), Expect = 3.438e-20 Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 1 Query: 10 GLTNKGNFLELLKLLSKYDVVLKEHI 87 G + GNFL +++LLSK+D L EH+ Sbjct: 309 GSAHNGNFLGIIELLSKFDPFLAEHL 334 HSP 3 Score: 30.0314 bits (66), Expect = 3.438e-20 Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 2 Query: 554 FFGTVESIFTFCSASTSRWQMFIKH 628 FF V+++FTFC++ST RW+ + Sbjct: 499 FFDFVQAMFTFCASSTHRWRKVFRD 523 HSP 4 Score: 22.3274 bits (46), Expect = 3.438e-20 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 1 Query: 454 LKQKTKKEVFVACIDHSINL 513 LKQ+ +V C HS+NL Sbjct: 465 LKQRNSLICYVPCAAHSLNL 484
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000042715.1 (pep primary_assembly:Astyanax_mexicanus-2.0:16:11855083:11857132:-1 gene:ENSAMXG00000035113.1 transcript:ENSAMXT00000042715.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 73.9442 bits (180), Expect = 6.923e-20 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 147 KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*KD-GLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKN 467 K +VNEIK +KYF ++ DSTPD++HVDQ++ + RFV D V+E FL F P++ S S ++ GL++ R Q YDN + MSG + G+QA +K +N Sbjct: 206 KQAIVNEIKESKYFSVIVDSTPDLAHVDQLTFIFRFVNNDG---HVVERFLAFEPIENHSGDSLAECVVAMVENLGLDLSNCRGQSYDNASNMSGKYNGIQAHLKQRN 310 HSP 2 Score: 30.0314 bits (66), Expect = 6.923e-20 Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 1 Query: 10 GLTNKGNFLELLKLLSKYDVVLKEHI 87 G + GNFL +++LL+K+D L EH+ Sbjct: 150 GSAHNGNFLGIIELLAKFDPFLAEHL 175 HSP 3 Score: 28.8758 bits (63), Expect = 6.923e-20 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 554 FFGTVESIFTFCSASTSRW 610 FF V++++TFC++ST RW Sbjct: 340 FFDFVQAMYTFCASSTHRW 358 HSP 4 Score: 21.557 bits (44), Expect = 6.923e-20 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 1 Query: 454 LKQKTKKEVFVACIDHSINL 513 LKQ+ +V C HS+NL Sbjct: 306 LKQRNPLICYVPCAAHSLNL 325
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000044961.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000032.1:419978:423709:1 gene:ENSAMXG00000036481.1 transcript:ENSAMXT00000044961.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 57.7658 bits (138), Expect = 2.285e-14 Identity = 50/155 (32.26%), Postives = 75/155 (48.39%), Query Frame = 3 Query: 102 DKSSKVSYMPLDIENK------SKLVNEI----KLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA---------*KDGLNIIMYRSQRYDNVALMSGVHVGVQA-IIKAKNKKRSFCCMY*SFN 506 ++ +KV Y+ I+N+ +K++ EI + AKY+ ++ D TPDISH +Q+S V+R V D V + E F GF+ ++ S K K L+I R Q YDN + M G GVQA I++ NK C + N Sbjct: 269 NQEAKVHYLSGTIQNEIIALIGNKVLEEIVRRAQRAKYYSVIMDCTPDISHKEQLSVVLRLVNCDP-SVSIAEHFFGFIDVEDTSG--------KGLTEVLLDHLQKHNLSISDCRGQSYDNGSNMMGQKQGVQARILQLNNKALCIPCSSHTLN 414 HSP 2 Score: 30.0314 bits (66), Expect = 2.285e-14 Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 1 Query: 19 NKGNFLELLKLLSKYDVVLKEHILIWRMINHQK 117 + GNFL ++L++K+D V+ EHI R I +Q+ Sbjct: 242 HNGNFLAQVELMAKFDPVMNEHI---RRIQNQE 271 HSP 3 Score: 28.4906 bits (62), Expect = 2.285e-14 Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 2 Query: 551 SFFGTVESIFTFCSASTSRWQMFIKH 628 SFFG ++ ++ S+S RW + KH Sbjct: 429 SFFGVLQRLYNLFSSSVQRWAVLRKH 454
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000042930.1 (pep primary_assembly:Astyanax_mexicanus-2.0:12:25471427:25473738:-1 gene:ENSAMXG00000037442.1 transcript:ENSAMXT00000042930.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 59.6918 bits (143), Expect = 4.064e-13 Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 3 Query: 102 DKSSKVSYMPLDIENK----------SKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*K------VEVIEVFLGFLPLKRK------SR*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAK 464 DK S V+Y+ I+N+ ++V+EIK A+++ ++ D+T D+S VDQ+S+V R+V + K + V++ E FLGF + + ++ ++ S +GL + R Q YD + MSG++ GVQ I K Sbjct: 127 DKKSNVNYLSPSIQNELIALLSQRVHDEIVSEIKEAEFYSVIMDTTQDLSKVDQLSQVFRYVTVRKDEADNAIAVDINESFLGFQNISDQTAQGLETKITELIQS-----NGLLLHKCRGQGYDGASTMSGIYSGVQKRILDK 264 HSP 2 Score: 32.7278 bits (73), Expect = 4.064e-13 Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 1 EREGLTNKGNFLELLKLLSKYDVVLKE 81 E+ G N GNFL ++ LL++YD VL+E Sbjct: 98 EKVGELNSGNFLSVIDLLARYDPVLRE 124
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Match: ENSAMXT00000036272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:11935414:11938921:1 gene:ENSAMXG00000041670.1 transcript:ENSAMXT00000036272.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.4546 bits (132), Expect = 4.380e-13 Identity = 45/152 (29.61%), Postives = 68/152 (44.74%), Query Frame = 3 Query: 102 DKSSKVSYMPLDIENK----------SKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*KDGLNIIMY---------------RSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 D +S+ Y+ +N+ +V +IK AKY+ I+ D TPDISH +Q+S VVR V++ + + E FLG++ + + GLN+ R Q YDN A M G GVQA + N + +F Sbjct: 295 DDASRTHYLGQQTQNEIIEIICSQTIQTIVAKIKQAKYYAIILDCTPDISHKEQMSLVVRIVELVP-EPHIREYFLGYMNVVETT--------------GLNLSNVVLEKLRALGIPFEDCRGQAYDNGANMKGKRQGVQARLLQLNPRAAF 431 HSP 2 Score: 36.965 bits (84), Expect = 4.380e-13 Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 548 ISFFGTVESIFTFCSASTSRWQMFIKH 628 IS+FG ++ +F F SA+T RW + +KH Sbjct: 454 ISYFGYLQRLFCFFSAATQRWDILLKH 480
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000028133.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948955]) HSP 1 Score: 57.3806 bits (137), Expect = 8.823e-14 Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 150 SKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKS---R*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 S +V++IK AKYF I+ D T DISH +Q+S ++R V + + K ++ E F+GFL + + S N + + G++ R Q YDN A M G + GVQA + KN + F Sbjct: 353 SAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLME-KPQIREHFMGFLEAEESTGQHLASMILN--RLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEKNPRALF 463 HSP 2 Score: 28.8758 bits (63), Expect = 8.823e-14 Identity = 9/27 (33.33%), Postives = 17/27 (62.96%), Query Frame = 2 Query: 539 LSCISFFGTVESIFTFCSASTSRWQMF 619 + +S+FG ++ ++T SAS RW + Sbjct: 483 VDAMSYFGVLQKLYTLFSASAQRWAIL 509 HSP 3 Score: 28.1054 bits (61), Expect = 8.823e-14 Identity = 8/24 (33.33%), Postives = 21/24 (87.50%), Query Frame = 1 Query: 16 TNKGNFLELLKLLSKYDVVLKEHI 87 ++ GNFL+ ++L++++D ++K+H+ Sbjct: 298 SSNGNFLKEVELMARFDPIMKDHL 321
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000042294.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:110016639]) HSP 1 Score: 57.3806 bits (137), Expect = 8.823e-14 Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 150 SKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKS---R*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 S +V++IK AKYF I+ D T DISH +Q+S ++R V + + K ++ E F+GFL + + S N + + G++ R Q YDN A M G + GVQA + KN + F Sbjct: 353 SAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLME-KPQIREHFMGFLEAEESTGQHLASMILN--RLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEKNPRALF 463 HSP 2 Score: 28.8758 bits (63), Expect = 8.823e-14 Identity = 9/27 (33.33%), Postives = 17/27 (62.96%), Query Frame = 2 Query: 539 LSCISFFGTVESIFTFCSASTSRWQMF 619 + +S+FG ++ ++T SAS RW + Sbjct: 483 VDAMSYFGVLQKLYTLFSASAQRWAIL 509 HSP 3 Score: 28.1054 bits (61), Expect = 8.823e-14 Identity = 8/24 (33.33%), Postives = 21/24 (87.50%), Query Frame = 1 Query: 16 TNKGNFLELLKLLSKYDVVLKEHI 87 ++ GNFL+ ++L++++D ++K+H+ Sbjct: 298 SSNGNFLKEVELMARFDPIMKDHL 321
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Match: ENSORLT00000045044.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948193]) HSP 1 Score: 57.3806 bits (137), Expect = 8.823e-14 Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 150 SKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKS---R*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 S +V++IK AKYF I+ D T DISH +Q+S ++R V + + K ++ E F+GFL + + S N + + G++ R Q YDN A M G + GVQA + KN + F Sbjct: 353 SAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLME-KPQIREHFMGFLEAEESTGQHLASMILN--RLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEKNPRALF 463 HSP 2 Score: 28.8758 bits (63), Expect = 8.823e-14 Identity = 9/27 (33.33%), Postives = 17/27 (62.96%), Query Frame = 2 Query: 539 LSCISFFGTVESIFTFCSASTSRWQMF 619 + +S+FG ++ ++T SAS RW + Sbjct: 483 VDAMSYFGVLQKLYTLFSASAQRWAIL 509 HSP 3 Score: 28.1054 bits (61), Expect = 8.823e-14 Identity = 8/24 (33.33%), Postives = 21/24 (87.50%), Query Frame = 1 Query: 16 TNKGNFLELLKLLSKYDVVLKEHI 87 ++ GNFL+ ++L++++D ++K+H+ Sbjct: 298 SSNGNFLKEVELMARFDPIMKDHL 321
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000049700.1 (SMESG000049700.1) HSP 1 Score: 65.855 bits (159), Expect = 8.639e-18 Identity = 51/148 (34.46%), Postives = 74/148 (50.00%), Query Frame = 3 Query: 84 YFDLENDKSSKVSYMPLDIEN----------KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKID--K*KVEVIEVFLGFLPLKRKSR*SK---**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 + D VSY+ +N ++KL+N+IK KY+G FDSTPD +H + +S V R+V +D V + E FL F+ L K + ++ +A D L + RSQ YDN ALMSG G+Q I +N + F Sbjct: 213 HLDHARQNPGSVSYLSPQTQNEFMGLLASKVRNKLLNDIKRNKYYGSFFDSTPDQAHREHLSRVKRYVDVDFSNKTVTIKESFLRFIELHAKDAATLEYVIVDTLEA--DNLRLDDCRSQCYDNAALMSGHISGLQQRICNRNPRAIF 358 HSP 2 Score: 31.9574 bits (71), Expect = 8.639e-18 Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2 Query: 545 CISFFGTVESIFTFCSASTSRWQ 613 ++FFGT+ESI+ + S ST RW Sbjct: 380 AVTFFGTIESIYLYFSRSTLRWN 402 HSP 3 Score: 29.261 bits (64), Expect = 8.639e-18 Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 1 Query: 16 TNKGNFLELLKLLSKYDVVLKEHI 87 +N GNFL LKLL++YD +L H+ Sbjct: 191 SNVGNFLATLKLLAEYDPLLFNHL 214
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000036749.1 (SMESG000036749.1) HSP 1 Score: 66.6254 bits (161), Expect = 1.187e-16 Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 156 LVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKIDK*KVEVIEVFLGFLPLKRKSR*SK**NS*KA*KD---------GLNIIMYRSQRYDNVALMSGVHVGVQAII 455 ++ IK AKYF ++ D TPD HV+QI+ V+R+V I +VEV E F+GF K+ + ++ D LNI R Q YDN + MSG H G+Q I Sbjct: 267 ILTSIKEAKYFSVILDCTPDTGHVEQITMVIRYVHIKNYEVEVRENFIGFYQAKKCTG--------ESFYDFLIQKLNYIELNISDMRGQGYDNGSNMSGKHRGLQKRI 367 HSP 2 Score: 29.6462 bits (65), Expect = 1.187e-16 Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 2 Query: 539 LSCISFFGTVESIFTFCSASTSRWQMFIKH 628 S + FF V +I F SAS RWQ+ K+ Sbjct: 396 FSTVDFFSNVSAISNFFSASPFRWQVLKKN 425 HSP 3 Score: 26.9498 bits (58), Expect = 1.187e-16 Identity = 9/23 (39.13%), Postives = 18/23 (78.26%), Query Frame = 1 Query: 19 NKGNFLELLKLLSKYDVVLKEHI 87 N GNFL+ ++++ K+D ++ +HI Sbjct: 208 NNGNFLKAIEMIGKFDDIMADHI 230
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000069312.1 (SMESG000069312.1) HSP 1 Score: 62.7734 bits (151), Expect = 3.209e-16 Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3 Query: 84 YFDLENDKSSKVSYMPLDIENKS----------KLVNEIKLAKYFGIMFDSTPDISHVDQISEV-VRFVKI--DK*KVEVIEVFLGFLPLKRKSR*S-K**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 + D VSY+ +N+S KL+N+IK KY+GI+FDSTPD +H + +S V +R+V + V + E FLGF+ L K + + + D L + RSQ YDN ALMSG G+Q I +N + F Sbjct: 322 HIDHARQNPGSVSYLSPQTQNESISLLASKVRNKLLNDIKRNKYYGILFDSTPDQAHRELLSRVSMRYVNVYFSNKTVTIKESFLGFIELHAKDAATLEHVIADTLEADNLRLDDCRSQCYDNAALMSGHISGLQQRICNRNPRAIF 468 HSP 2 Score: 31.5722 bits (70), Expect = 3.209e-16 Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1 Query: 16 TNKGNFLELLKLLSKYDVVLKEHI 87 +N GNFL LKLL++YD +L HI Sbjct: 300 SNVGNFLATLKLLAEYDPLLSNHI 323 HSP 3 Score: 27.7202 bits (60), Expect = 3.209e-16 Identity = 10/21 (47.62%), Postives = 16/21 (76.19%), Query Frame = 2 Query: 548 ISFFGTVESIFTFCSASTSRW 610 ++FF T++SI+ + S ST RW Sbjct: 491 VTFFRTIKSIYLYFSRSTLRW 511
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000047784.1 (SMESG000047784.1) HSP 1 Score: 72.7886 bits (177), Expect = 5.287e-15 Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = 3 Query: 78 RTYFDLENDKSSKVSYMPLDIEN----------KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKID--K*KVEVIEVFLGFLPLKRK-SR*SK**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 ++ +L + VSY+ L+I+N ++KL+ +IKL Y+GI+ DST D+ + +Q+S+V+RFV ID + + E FLGF+ + K + + K D + RSQ YDN A+M+G G+Q I A+N + F Sbjct: 158 ESHLNLTRESPGSVSYLSLEIQNEFISLLASNVRNKLLKDIKLNNYYGILLDSTRDLGYREQLSKVIRFVNIDFENKTINIKESFLGFIEIHAKDAAILETVIVEKLQSDNIPFDDCRSQCYDNAAVMTGHISGLQQRICARNHQTLF 305
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Match: SMESG000074559.1 (SMESG000074559.1) HSP 1 Score: 72.7886 bits (177), Expect = 5.989e-15 Identity = 50/148 (33.78%), Postives = 80/148 (54.05%), Query Frame = 3 Query: 78 RTYFDLENDKSSKVSYMPLDIEN----------KSKLVNEIKLAKYFGIMFDSTPDISHVDQISEVVRFVKID--K*KVEVIEVFLGFLPLKRKSR*S-K**NS*KA*KDGLNIIMYRSQRYDNVALMSGVHVGVQAIIKAKNKKRSF 482 ++ +L + VSY+ L+IEN ++KL+ +IKL Y+GI+ DST D+ + +Q+S+V+RFV ID + + E FLGF+ + K + + K D + + SQ YDN A+M+G G+Q I A+N F Sbjct: 180 ESHLNLTRESPGSVSYLSLEIENEFISLLASNVRNKLLKDIKLNNYYGILLDSTRDLGYPEQLSKVIRFVNIDFENKTINIKESFLGFIEIHAKDAATLETVIVEKLQSDNIPLDDCTSQCYDNAAVMTGHISGLQQRICARNHHSLF 327 The following BLAST results are available for this feature:
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Zinc finger MYM-type protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of Zinc finger MYM-type protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016372 ID=SMED30016372|Name=Zinc finger MYM-type protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=628bpback to top Annotated Terms
The following terms have been associated with this transcript:
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