SMED30016351
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016351 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Alignments
SMED30016351 aligns in the following genomic locations:
Homology
BLAST of SMED30016351 vs. Ensembl Human
Match: NOLC1 (nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]) HSP 1 Score: 63.1586 bits (152), Expect = 3.450e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 628 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 706
BLAST of SMED30016351 vs. Ensembl Human
Match: NOLC1 (nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]) HSP 1 Score: 63.1586 bits (152), Expect = 3.451e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 629 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 707
BLAST of SMED30016351 vs. Ensembl Human
Match: NOLC1 (nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]) HSP 1 Score: 63.1586 bits (152), Expect = 3.606e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 619 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697
BLAST of SMED30016351 vs. Ensembl Human
Match: NOLC1 (nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]) HSP 1 Score: 63.1586 bits (152), Expect = 3.818e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 620 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 698
BLAST of SMED30016351 vs. Ensembl Fly
Match: Nopp140 (gene:FBgn0037137 transcript:FBtr0332812) HSP 1 Score: 56.6102 bits (135), Expect = 3.033e-9 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -2 Query: 27 RSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 254 R SPFRR+R ED D + SF KN++ G +A + LK+T+GKSFK EK K+KR S GG I + NS+KF+ Sbjct: 609 RRSPFRRVRTEDVVVDSRVQDMSFEAKKNAAGSWGERANKDLKHTRGKSFKHEKTKKKRGSYRGGQIDVGVNSIKFD 685
BLAST of SMED30016351 vs. Ensembl Fly
Match: Nopp140 (gene:FBgn0037137 transcript:FBtr0089579) HSP 1 Score: 56.225 bits (134), Expect = 3.303e-9 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -2 Query: 27 RSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 254 R SPFRR+R ED D + SF KN++ G +A + LK+T+GKSFK EK K+KR S GG I + NS+KF+ Sbjct: 610 RRSPFRRVRTEDVVVDSRVQDMSFEAKKNAAGSWGERANKDLKHTRGKSFKHEKTKKKRGSYRGGQIDVGVNSIKFD 686
BLAST of SMED30016351 vs. Ensembl Zebrafish
Match: nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6349]) HSP 1 Score: 52.373 bits (124), Expect = 9.983e-8 Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = -2 Query: 27 SPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 248 +PFRRIR+ED D + NSF ++ G +A LK+T+GKSF+ EK K+KR S GG IS NS+KF+ Sbjct: 925 APFRRIREEDVEVDPRLKDNSFDAKMGANGDWGQKANNVLKFTKGKSFRHEKTKKKRGSYRGGAISTTVNSIKFD 999
BLAST of SMED30016351 vs. Ensembl Xenopus
Match: nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:NCBI gene;Acc:395027]) HSP 1 Score: 50.8322 bits (120), Expect = 5.152e-7 Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = -2 Query: 27 RSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 254 +++PFRR+R+E+ + N+F K + G +A LK+T+GKSF+ EK K+KR S GG IS NS+KF+ Sbjct: 839 KNTPFRRVREEEVEINPLMTDNAFEAKKGAQGDWGEKANNVLKFTKGKSFRHEKTKKKRGSYCGGAISTSVNSIKFD 915
BLAST of SMED30016351 vs. Ensembl Mouse
Match: Nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]) HSP 1 Score: 62.3882 bits (150), Expect = 4.329e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 620 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 698
BLAST of SMED30016351 vs. Ensembl Mouse
Match: Nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]) HSP 1 Score: 62.3882 bits (150), Expect = 4.413e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 621 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 699
BLAST of SMED30016351 vs. Ensembl Mouse
Match: Nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]) HSP 1 Score: 62.3882 bits (150), Expect = 4.716e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 622 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 700
BLAST of SMED30016351 vs. Ensembl Mouse
Match: Nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]) HSP 1 Score: 62.3882 bits (150), Expect = 4.716e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 622 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 700
BLAST of SMED30016351 vs. Ensembl Mouse
Match: Nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:MGI Symbol;Acc:MGI:1918019]) HSP 1 Score: 62.3882 bits (150), Expect = 4.761e-11 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 622 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 700
BLAST of SMED30016351 vs. UniProt/SwissProt
Match: sp|P41777|NOLC1_RAT (Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Nolc1 PE=1 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.477e-10 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 624 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702
BLAST of SMED30016351 vs. UniProt/SwissProt
Match: sp|Q14978|NOLC1_HUMAN (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.732e-10 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 619 KRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 697
BLAST of SMED30016351 vs. UniProt/SwissProt
Match: sp|E9Q5C9|NOLC1_MOUSE (Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 3.299e-10 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 +R SSPFRR+R+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NSVKF+ Sbjct: 622 RRASSPFRRVREEEIEVDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 700
BLAST of SMED30016351 vs. TrEMBL
Match: K9KFF5 (Nucleolar phosphoprotein p130-like protein (Fragment) OS=Equus caballus OX=9796 PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.554e-10 Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = -2 Query: 27 KKKFKLDASFVNSTPVEKKIVP------------AKRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 329 KK+ + +A+ TP KKI P KR SSPFRRIR+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 13 KKRKQNEAAKEAETPQAKKIKPQTPNTFPKRKKGEKRASSPFRRIREEEIEVDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 126
BLAST of SMED30016351 vs. TrEMBL
Match: U6D0G1 (Nucleolar and coiled-body phosphoprotein 1 (Fragment) OS=Neovison vison OX=452646 GN=NOLC1 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.348e-10 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRRIR+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 6 KRASSPFRRIREEEIEVDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 84
BLAST of SMED30016351 vs. TrEMBL
Match: L7MRV2 (Nucleolar and coiled-body phosphoprotein 1-like protein (Fragment) OS=Equus caballus OX=9796 GN=NOLC1 PE=2 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.348e-10 Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 KR SSPFRRIR+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 6 KRASSPFRRIREEEIEVDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 84
BLAST of SMED30016351 vs. TrEMBL
Match: L5K0A6 (Nucleolar phosphoprotein p130 OS=Pteropus alecto OX=9402 GN=PAL_GLEAN10014259 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.442e-9 Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = -2 Query: 27 KKKFKLDASFVNSTPVEKKIVP------------AKRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 329 KK+ +++A+ TP KKI P KR SSPFRRIR+E+ D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 591 KKRKQIEAATEEETPQAKKIKPQTPNTFPKRKKAEKRASSPFRRIREEEIEVDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 704
BLAST of SMED30016351 vs. TrEMBL
Match: K9IME6 (Putative nucleolar and coiled-body phosphoprotein 1 OS=Desmodus rotundus OX=9430 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 1.869e-9 Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = -2 Query: 27 KKKFKLDASFVNSTPVEKKIVP------------AKRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 329 KK+ + +A+ TP KKI P KR SSPFRR+R+ED D + NSF + ++ G +A Q LK+T+GKSF+ EK K+KR S GG IS+Q NS+KF+ Sbjct: 600 KKRKQNEAAMQTETPPAKKIKPQTPNTFPKRKKAEKRASSPFRRVREEDVEVDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 713
BLAST of SMED30016351 vs. Ensembl Cavefish
Match: nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6349]) HSP 1 Score: 51.9878 bits (123), Expect = 1.378e-7 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = -2 Query: 27 KRRSSPFRRIRDEDFS-DRXXXXXXXXXXXXXXSLCGNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 260 K+ + PFRRI+D++ D + NSF+ ++ G +A LK+T+GKSF+ EK K+KR S GG IS NS+KF+ Sbjct: 807 KKTNDPFRRIKDDEVEVDPRLADNSFTAKMGATGDWGERANNVLKFTKGKSFRHEKTKKKRGSYRGGAISTSVNSIKFD 885
BLAST of SMED30016351 vs. Ensembl Medaka
Match: nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:NCBI gene;Acc:101162948]) HSP 1 Score: 47.3654 bits (111), Expect = 4.747e-6 Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = -2 Query: 27 GNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 155 G +A + L++T+GKSF+ EK K+KR S GG IS NS+KFE Sbjct: 866 GQKANEVLRFTKGKSFRHEKTKKKRGSYRGGAISTSVNSIKFE 908
BLAST of SMED30016351 vs. Ensembl Medaka
Match: nolc1 (nucleolar and coiled-body phosphoprotein 1 [Source:NCBI gene;Acc:101162948]) HSP 1 Score: 47.3654 bits (111), Expect = 4.747e-6 Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = -2 Query: 27 GNQAYQSLKYTQGKSFKQEKNKRKRSSCIGGPISLQNNSVKFE 155 G +A + L++T+GKSF+ EK K+KR S GG IS NS+KFE Sbjct: 866 GQKANEVLRFTKGKSFRHEKTKKKRGSYRGGAISTSVNSIKFE 908 The following BLAST results are available for this feature:
BLAST of SMED30016351 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of SMED30016351 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30016351 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of SMED30016351 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30016351 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30016351 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30016351 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of SMED30016351 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30016351 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30016351 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30016351 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30016351 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30016351 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of SMED30016351 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 0
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016351 ID=SMED30016351|Name=SMED30016351|organism=Schmidtea mediterranea sexual|type=transcript|length=612bpback to top protein sequence of SMED30016351-orf-1 >SMED30016351-orf-1 ID=SMED30016351-orf-1|Name=SMED30016351-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp MRKVIRMFKKKFKLDASFVNSTPVEKKIVPAKRRSSPFRRIRDEDFSDRKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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