Dmd-1 splice form 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016325 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 60Note: Hover over icons to view figure legend
Homology
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Match: DMRTA1 (DMRT like family A1 [Source:HGNC Symbol;Acc:HGNC:13826]) HSP 1 Score: 53.1434 bits (126), Expect = 4.066e-7 Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 3 Query: 360 PQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKS 539 P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + + ++ +E+S Sbjct: 92 PRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEES 151
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Match: DMRTA2 (DMRT like family A2 [Source:HGNC Symbol;Acc:HGNC:13908]) HSP 1 Score: 53.1434 bits (126), Expect = 4.491e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 61 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 129
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Match: DMRTA2 (DMRT like family A2 [Source:HGNC Symbol;Acc:HGNC:13908]) HSP 1 Score: 53.1434 bits (126), Expect = 4.491e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 61 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 129
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Match: DMRT1 (doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]) HSP 1 Score: 52.373 bits (124), Expect = 5.542e-7 Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 SK+SP+ P C RCRNHG + KGHK+ C +C CK C LI R+ Sbjct: 67 SKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQ 112
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Match: DMRT3 (doublesex and mab-3 related transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:13909]) HSP 1 Score: 50.0618 bits (118), Expect = 3.147e-6 Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 3 Query: 363 QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 ++P C RCRNHG + KGHK+ CR +C C+ C+LI R+ Sbjct: 25 RTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQ 65
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Match: mab-3 (Protein male abnormal 3 [Source:UniProtKB/Swiss-Prot;Acc:O18214]) HSP 1 Score: 58.151 bits (139), Expect = 1.784e-9 Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 3 Query: 207 HGQLLPVKNHRRNCPFKLCPCPLCTVVSHGRE----IVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKK-CRHSNCPCKLCLLITMRK 485 HG+L P K H+ +C + CPC CT+V R+ + ++I + + + PHC RC HG +GHK+ C+ C C LC L+ R+ Sbjct: 34 HGELKPRKGHKPDCRYLKCPCRECTMVEQRRQLNNLLSKKKIHCTPATQTRDGKRVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRR 131 HSP 2 Score: 51.2174 bits (121), Expect = 3.207e-7 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 3 Query: 204 AHGQLLPVKNHRRN-CPFKLCPCPLCTVVSHGREIVARQIRLYRNQK 341 AHG L+P++ H+R C F C C LCT+V H R ++A QI+L R+Q+ Sbjct: 99 AHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQQ 145 HSP 3 Score: 46.9802 bits (110), Expect = 8.327e-6 Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3 Query: 372 HCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +C+RC NHGE KGHK CR+ CPC+ C ++ R+ Sbjct: 27 YCQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRR 64
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Match: dmd-5 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q19291]) HSP 1 Score: 51.6026 bits (122), Expect = 2.379e-7 Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 3 Query: 315 QIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +IR RNQ+ +P C RCRNHG +A KGHK+ C+ +C C C LI R+ Sbjct: 21 RIRAERNQR--------TPKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAERQ 69
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Match: dmd-8 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q9TXN8]) HSP 1 Score: 49.6766 bits (117), Expect = 1.463e-6 Identity = 34/123 (27.64%), Postives = 54/123 (43.90%), Query Frame = 3 Query: 207 HGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPH--------------------------CRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEK 497 HG + + H C ++ C C C +V REI++ QIRL R Q +R+ C++C+NH K HKK+C++S+C C+ C LI R+ ++ Sbjct: 57 HGVFVETRGH--TCEYRSCECEQCDLVRKRREIMSTQIRLRREQDKKFQRTNDISEANVFPGFTGGEADEKAVMENMNMCYFCQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRALDR 177
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Match: dmd-8 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:Q9TXN8]) HSP 1 Score: 49.6766 bits (117), Expect = 1.463e-6 Identity = 34/123 (27.64%), Postives = 54/123 (43.90%), Query Frame = 3 Query: 207 HGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPH--------------------------CRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEK 497 HG + + H C ++ C C C +V REI++ QIRL R Q +R+ C++C+NH K HKK+C++S+C C+ C LI R+ ++ Sbjct: 57 HGVFVETRGH--TCEYRSCECEQCDLVRKRREIMSTQIRLRREQDKKFQRTNDISEANVFPGFTGGEADEKAVMENMNMCYFCQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRALDR 177
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Match: dmd-10 (DM (Doublesex/MAB-3) Domain family [Source:UniProtKB/TrEMBL;Acc:G5EEJ1]) HSP 1 Score: 48.9062 bits (115), Expect = 2.076e-6 Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 3 Query: 207 HGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQK 341 HG+ +K H+R+CPF+ CPC C VVS ++++A QI++ R Q+ Sbjct: 46 HGRKSRLKGHKRSCPFRECPCAKCAVVSERQKLMADQIKIRRRQR 90
BLAST of Dmd-1 splice form 1 vs. Ensembl Fly
Match: dmrt99B (gene:FBgn0039683 transcript:FBtr0085454) HSP 1 Score: 51.6026 bits (122), Expect = 5.406e-7 Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 3 Query: 339 KDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 + S+R ++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 29 RAASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 100
BLAST of Dmd-1 splice form 1 vs. Ensembl Fly
Match: dmrt93B (gene:FBgn0038851 transcript:FBtr0084007) HSP 1 Score: 48.521 bits (114), Expect = 4.477e-6 Identity = 26/69 (37.68%), Postives = 35/69 (50.72%), Query Frame = 3 Query: 300 EIVARQIRLYRNQKDISKRSP-------QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 E+ ++ RL N K P + P C RCRNHG + +GHKK C + NC C C+LI R+ Sbjct: 11 EVANKRPRLVANPKATKIVEPTPAKVTNRVPKCARCRNHGIISELRGHKKLCTYKNCKCAKCVLIFERQ 79
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Match: dmrta2 (DMRT-like family A2 [Source:NCBI gene;Acc:474350]) HSP 1 Score: 53.1434 bits (126), Expect = 2.065e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 50 TEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 118
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Match: dmrt2b (doublesex and mab-3 related transcription factor 2b [Source:ZFIN;Acc:ZDB-GENE-080813-1]) HSP 1 Score: 51.2174 bits (121), Expect = 7.265e-7 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 3 Query: 294 GREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 GRE++ ++ ++R +SP C RCRNHG + KGHK+ CR +C C CLL+ R+ Sbjct: 29 GREVMGT------DEAPAARRLSRSPKCARCRNHGVVSRLKGHKRLCRWRDCQCANCLLVVERQ 86
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Match: dmrt2b (doublesex and mab-3 related transcription factor 2b [Source:ZFIN;Acc:ZDB-GENE-080813-1]) HSP 1 Score: 51.2174 bits (121), Expect = 7.265e-7 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 3 Query: 294 GREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 GRE++ ++ ++R +SP C RCRNHG + KGHK+ CR +C C CLL+ R+ Sbjct: 29 GREVMGT------DEAPAARRLSRSPKCARCRNHGVVSRLKGHKRLCRWRDCQCANCLLVVERQ 86
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Match: dmrt2b (doublesex and mab-3 related transcription factor 2b [Source:ZFIN;Acc:ZDB-GENE-080813-1]) HSP 1 Score: 51.2174 bits (121), Expect = 7.397e-7 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 3 Query: 294 GREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 GRE++ ++ ++R +SP C RCRNHG + KGHK+ CR +C C CLL+ R+ Sbjct: 29 GREVMGT------DEAPAARRLSRSPKCARCRNHGVVSRLKGHKRLCRWRDCQCANCLLVVERQ 86
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Match: dmrt3a (doublesex and mab-3 related transcription factor 3a [Source:NCBI gene;Acc:450035]) HSP 1 Score: 50.8322 bits (120), Expect = 1.245e-6 Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 324 LYRNQKDISKRSP--QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 LY R+P ++P C RCRNHG + KGHK+ CR +C C+ C+LI R+ Sbjct: 9 LYMGGPVSQPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQ 64
BLAST of Dmd-1 splice form 1 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:Xenbase;Acc:XB-GENE-854521]) HSP 1 Score: 53.9138 bits (128), Expect = 1.760e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 40 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 108
BLAST of Dmd-1 splice form 1 vs. Ensembl Xenopus
Match: dmrta1 (DMRT like family A1 [Source:NCBI gene;Acc:779901]) HSP 1 Score: 51.9878 bits (123), Expect = 8.389e-7 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 3 Query: 360 PQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 P++P C RCRNHG +A KGHK+ CR +C C C LI R+ Sbjct: 78 PRTPKCARCRNHGVVSALKGHKRFCRWRDCSCAKCTLIAERQ 119
BLAST of Dmd-1 splice form 1 vs. Ensembl Xenopus
Match: DMRT1 (doublesex and mab-3 related transcription factor 1 [Source:NCBI gene;Acc:100488257]) HSP 1 Score: 51.6026 bits (122), Expect = 9.183e-7 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 K+SP+ P C RCRNHG + KGHK+ C +C CK C LI R+ Sbjct: 24 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAERQ 68
BLAST of Dmd-1 splice form 1 vs. Ensembl Xenopus
Match: st3gal4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:Xenbase;Acc:XB-GENE-963280]) HSP 1 Score: 51.2174 bits (121), Expect = 1.384e-6 Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 324 LYRNQKDISKRSP--QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 LY R+P ++P C RCRNHG + KGHK+ CR +C C+ C+LI R+ Sbjct: 9 LYMGGPVSQPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQ 64
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Match: Dmrta1 (doublesex and mab-3 related transcription factor like family A1 [Source:MGI Symbol;Acc:MGI:2653627]) HSP 1 Score: 55.0694 bits (131), Expect = 6.591e-8 Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 3 Query: 273 LCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKS 539 L + S GR A L R + P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + + ++ +E+S Sbjct: 52 LRSTASSGRAGCAPGPGLDRALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEES 140
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Match: Dmrta2 (doublesex and mab-3 related transcription factor like family A2 [Source:MGI Symbol;Acc:MGI:2653629]) HSP 1 Score: 52.7582 bits (125), Expect = 3.583e-7 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 ++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 61 EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 128
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Match: Dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:MGI Symbol;Acc:MGI:1354733]) HSP 1 Score: 51.9878 bits (123), Expect = 4.730e-7 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 K+SP+ P C RCRNHG + KGHK+ C +C CK C LI R+ Sbjct: 66 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAERQ 110
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Match: Dmrt1 (doublesex and mab-3 related transcription factor 1 [Source:MGI Symbol;Acc:MGI:1354733]) HSP 1 Score: 50.447 bits (119), Expect = 9.483e-7 Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILV 548 K+SP+ P C RCRNHG + KGHK+ C +C CK C LI R+ + + ++ +E+ + + Sbjct: 66 KKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCSLIAERQRVMAAQVALRRQQAQEEELGI 131
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Match: Dmrt3 (doublesex and mab-3 related transcription factor 3 [Source:MGI Symbol;Acc:MGI:2449470]) HSP 1 Score: 50.447 bits (119), Expect = 2.040e-6 Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 3 Query: 363 QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 ++P C RCRNHG + KGHK+ CR +C C+ C+LI R+ Sbjct: 25 RTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQ 65
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Match: sp|O18214|MAB3_CAEEL (Protein male abnormal 3 OS=Caenorhabditis elegans OX=6239 GN=mab-3 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.269e-8 Identity = 32/98 (32.65%), Postives = 49/98 (50.00%), Query Frame = 3 Query: 207 HGQLLPVKNHRRNCPFKLCPCPLCTVVSHGRE----IVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKK-CRHSNCPCKLCLLITMRK 485 HG+L P K H+ +C + CPC CT+V R+ + ++I + + + PHC RC HG +GHK+ C+ C C LC L+ R+ Sbjct: 34 HGELKPRKGHKPDCRYLKCPCRECTMVEQRRQLNNLLSKKKIHCTPATQTRDGKRVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRR 131 HSP 2 Score: 51.2174 bits (121), Expect = 4.079e-6 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 3 Query: 204 AHGQLLPVKNHRRN-CPFKLCPCPLCTVVSHGREIVARQIRLYRNQK 341 AHG L+P++ H+R C F C C LCT+V H R ++A QI+L R+Q+ Sbjct: 99 AHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQQ 145
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Match: sp|Q8CFG4|DMRTA_MOUSE (Doublesex- and mab-3-related transcription factor A1 OS=Mus musculus OX=10090 GN=Dmrta1 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.610e-7 Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 3 Query: 273 LCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKS 539 L + S GR A L R + P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + + ++ +E+S Sbjct: 52 LRSTASSGRAGCAPGPGLDRALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEES 140
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Match: sp|A4QNP7|DMTA2_XENTR (Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis OX=8364 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 9.322e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 40 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 108
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Match: sp|Q2MJB4|DMTA2_XENLA (Doublesex- and mab-3-related transcription factor A2 OS=Xenopus laevis OX=8355 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.155e-6 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 40 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 108
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Match: sp|Q4AE28|DMTA2_TAKRU (Doublesex- and mab-3-related transcription factor A2 OS=Takifugu rubripes OX=31033 GN=dmrta2 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.156e-6 Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 S + P++P C RCRNHG +A KGHK+ CR +C C C LI R+ Sbjct: 16 SDKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQ 61
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Match: R4PJJ9 (Dmd-1 splice form 1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0 Identity = 323/324 (99.69%), Postives = 323/324 (99.69%), Query Frame = 3 Query: 15 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLXXXXXXXXXXXXXXXXXXXXXXAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVXXXXXXXXXXXXXXAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY 986 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNV QHNSVEYLPTATPSWYSNFY Sbjct: 1 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVSQHNSVEYLPTATPSWYSNFY 324
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Match: R4PWS7 (Dmd-1 splice form 4 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0 Identity = 324/341 (95.01%), Postives = 324/341 (95.01%), Query Frame = 3 Query: 15 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLXXXXXXXXXXXXXXXXXXXXXXAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVXXXXXXXXXXXXXXAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLY-----------------AQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY 986 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLY AQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY Sbjct: 1 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYGYFQLIVWALVLIAFLLAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY 341
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Match: R4PLD6 (Dmd-1 splice form 2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 498.049 bits (1281), Expect = 7.127e-176 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 3 Query: 15 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLXXXXXXXXXXXXXXXXXXXXXXAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVXXXXXXXXXXXXXXAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHN 863 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHN Sbjct: 1 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHN 283
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Match: R4PU10 (Dmd-1 splice form 3 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 4.138e-94 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 3 Query: 15 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLXXXXXXXXXXXXXXXXXXXXXXAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY 503 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY Sbjct: 1 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY 163
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Match: A0A0R3U081 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS13504 PE=4 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.182e-32 Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 204 AHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQK----------------------DISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEE 533 AHG+L+ V+ H+RNCP+K C C +C++V++GR IVARQI LYR+QK D + PHCRRCRNHG+ N WKGHKK C C C+ C+LIT+RK+NEK+ RE+VQE+++E Sbjct: 106 AHGRLIAVRQHKRNCPYKHCSCSVCSLVNYGRHIVARQIALYRDQKNNHNDEGGNLGRGSRGDKTRGADKIDSEDEGPHCRRCRNHGKTNPWKGHKKVCPFYYCICQQCILITLRKSNEKNLREVVQESYKE 237
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Match: DMRTA1 (doublesex- and mab-3-related transcription factor A2 [Source:NCBI gene;Acc:103021351]) HSP 1 Score: 56.6102 bits (135), Expect = 1.338e-8 Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 3 Query: 312 RQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILV 548 R L R + + P++P C RCRNHG +A KGHK+ CR C C C LI R+ + + ++ +E + Sbjct: 27 RAPLLLRAPAGLERAFPRTPKCARCRNHGVLSALKGHKRACRWRECACARCALIAERQRVMAAQVALRRQQEQESKTFI 105
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Match: DMRTA1 (doublesex- and mab-3-related transcription factor A2 [Source:NCBI gene;Acc:103021351]) HSP 1 Score: 55.8398 bits (133), Expect = 1.890e-8 Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 3 Query: 312 RQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 R L R + + P++P C RCRNHG +A KGHK+ CR C C C LI R+ Sbjct: 13 RAPLLLRAPAGLERAFPRTPKCARCRNHGVLSALKGHKRACRWRECACARCALIAERQ 70
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:103023395]) HSP 1 Score: 53.5286 bits (127), Expect = 1.392e-7 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 3 Query: 348 SKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 +++ P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 54 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 122
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Match: dmrt3a (doublesex and mab-3 related transcription factor 3 [Source:NCBI gene;Acc:103040280]) HSP 1 Score: 50.0618 bits (118), Expect = 1.605e-6 Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 3 Query: 324 LYRNQKDISKRSP--QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 LY R+P ++P C RCRNHG + KGHK+ CR +C C C+LI R+ Sbjct: 9 LYVGGPVAQARAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCDKCILIIERQ 64
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Match: dmrt1 (doublesex- and mab-3-related transcription factor 1 [Source:NCBI gene;Acc:103041212]) HSP 1 Score: 49.2914 bits (116), Expect = 2.005e-6 Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +R P+ P C RCRNHG + KGHK+ C +C C+ C LI+ R+ Sbjct: 26 RRQPRMPKCSRCRNHGFVSPLKGHKRFCNWRDCQCQKCKLISERQ 70
BLAST of Dmd-1 splice form 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004009.1 (pep scaffold:Pmarinus_7.0:GL483432:15080:15595:1 gene:ENSPMAG00000003668.1 transcript:ENSPMAT00000004009.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.0618 bits (118), Expect = 5.750e-8 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 3 Query: 363 QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKS 539 ++P C RCRNHG +A KGHK+ CR +C C C LI R+ + + ++ +E+S Sbjct: 50 RTPKCARCRNHGVVSALKGHKRYCRWRDCLCAKCTLIAERQRVMAAQVALRRQQAQEES 108
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Match: EDO45848 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRL3]) HSP 1 Score: 46.2098 bits (108), Expect = 3.252e-7 Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 3 Query: 357 SPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 S ++P C RCRNHG ++ KGHK CR +C C CLLI R+ Sbjct: 8 SQRTPKCARCRNHGVCSSLKGHKYYCRWRDCLCTKCLLIAERQ 50
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Match: EDO41281 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Z8]) HSP 1 Score: 44.2838 bits (103), Expect = 1.265e-6 Identity = 20/39 (51.28%), Postives = 24/39 (61.54%), Query Frame = 3 Query: 369 PHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 P C RCRNHG + KGHK+ CR +C C C LI R+ Sbjct: 2 PKCARCRNHGVVSWLKGHKRYCRWRDCNCAQCTLIAERQ 40
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Match: EDO37386 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFT8]) HSP 1 Score: 43.5134 bits (101), Expect = 2.630e-6 Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = 3 Query: 369 PHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 P C RCRNHG + KGHK CR +C C CLLI R+ Sbjct: 3 PKCARCRNHGALSWLKGHKHYCRWRDCTCSKCLLIAERQ 41
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Match: EDO35744 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SKL0]) HSP 1 Score: 43.5134 bits (101), Expect = 2.931e-6 Identity = 20/39 (51.28%), Postives = 24/39 (61.54%), Query Frame = 3 Query: 369 PHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 P C RCR+HG + KGHK CR +C C C LIT R+ Sbjct: 3 PKCARCRSHGTVSWLKGHKHYCRWRDCTCSKCQLITERQ 41
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Match: EDO36073 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJN2]) HSP 1 Score: 43.8986 bits (102), Expect = 3.437e-6 Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 363 QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 ++P C RCRNHG + KGHK CR +C C C+LI R+ Sbjct: 19 RTPKCARCRNHGFDSILKGHKGFCRWRDCMCPKCMLIAERQ 59
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:111947399]) HSP 1 Score: 53.1434 bits (126), Expect = 2.162e-7 Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 360 PQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 52 PRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 116
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Match: dmrta2 (DMRT like family A2 [Source:NCBI gene;Acc:111947399]) HSP 1 Score: 53.1434 bits (126), Expect = 2.162e-7 Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 3 Query: 360 PQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSY----REIVQETHEEKSI 542 P++P C RCRNHG +A KGHK+ CR +C C C LI R+ + R+ QE +E + + Sbjct: 52 PRTPKCARCRNHGVVSALKGHKRYCRWKDCMCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL 116
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Match: dmy (Oryzias latipes doublesex- and mab-3-related transcription factor 1 (dmy), mRNA. [Source:RefSeq mRNA;Acc:NM_001104680]) HSP 1 Score: 51.9878 bits (123), Expect = 3.048e-7 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +RSP+ P C RCRNHG + KGHK+ CR +C C C LI R+ Sbjct: 19 QRSPRMPKCSRCRNHGFVSPLKGHKRFCRWKDCRCAKCKLIAERQ 63
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Match: dmy (Oryzias latipes doublesex- and mab-3-related transcription factor 1 (dmy), mRNA. [Source:RefSeq mRNA;Acc:NM_001104680]) HSP 1 Score: 51.6026 bits (122), Expect = 3.214e-7 Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 3 Query: 336 QKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +K RSP+ P C RCRNHG + KGHK+ CR +C C C LI R+ Sbjct: 4 EKQGRPRSPRMPKCSRCRNHGFVSPLKGHKRFCRWKDCRCAKCKLIAERQ 53
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Match: dmy (Oryzias latipes doublesex- and mab-3-related transcription factor 1 (dmy), mRNA. [Source:RefSeq mRNA;Acc:NM_001104680]) HSP 1 Score: 51.6026 bits (122), Expect = 3.802e-7 Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 3 Query: 351 KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 +RSP+ P C RCRNHG + KGHK+ CR +C C C LI R+ Sbjct: 19 QRSPRMPKCSRCRNHGFVSPLKGHKRFCRWKDCRCAKCKLIAERQ 63
BLAST of Dmd-1 splice form 1 vs. Planmine SMEST
Match: SMESG000080385.1 (SMESG000080385.1) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 3 Query: 15 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLXXXXXXXXXXXXXXXXXXXXXXAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVXXXXXXXXXXXXXXAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY 986 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY Sbjct: 1 MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRKKSRSSYMCRKCRAHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILVNSNNNSNNNNNNSSAFCLSNRSKDRSLAEDQSVFLRNINRTPILPTTGSNIYDTSHSSSLYAQNSMLNFSNSENCNIRPLNWSTASAYKVGLQPWDTNGSFDIHNNASYCGSSHLNNMMIGGHNVFQHNSVEYLPTATPSWYSNFY 324
BLAST of Dmd-1 splice form 1 vs. Planmine SMEST
Match: SMESG000002896.1 (SMESG000002896.1) HSP 1 Score: 98.2117 bits (243), Expect = 8.752e-23 Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 204 AHGQLLPVKNHRRNCPFKLCPCPLCTVVSHGREIVARQIRLYRNQKDIS-----------------------------------KRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREI 512 HG+L+PVK H+R C + C C C +V GR++VA+QI LYR+Q+ I K + PHCRRCRNH WK HKK C + +CPC C LI +RK EK+ R++ Sbjct: 46 VHGKLVPVKRHKRTCLYLHCKCIKCLLVDQGRKVVAKQIALYRDQRHIGTEDRHSSETQDQRLVSFKEYRLRGTTASVKTNVSDKDAGMGPHCRRCRNHNVTVIWKNHKKSCPYRHCPCDPCRLINVRKDTEKTLRDM 183
BLAST of Dmd-1 splice form 1 vs. Planmine SMEST
Match: SMESG000075920.1 (SMESG000075920.1) HSP 1 Score: 47.7506 bits (112), Expect = 5.643e-6 Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 3 Query: 363 QSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRK 485 ++P C RCRNHG + KGHK+ CR +C C C LI R+ Sbjct: 50 RTPKCARCRNHGYVSPLKGHKRYCRWKDCVCAKCALIAERQ 90
BLAST of Dmd-1 splice form 1 vs. Planmine SMEST
Match: SMESG000006521.1 (SMESG000006521.1) HSP 1 Score: 47.7506 bits (112), Expect = 8.616e-6 Identity = 22/68 (32.35%), Postives = 37/68 (54.41%), Query Frame = 3 Query: 345 ISKRSPQSPHCRRCRNHGEHNAWKGHKKKCRHSNCPCKLCLLITMRKTNEKSYREIVQETHEEKSILV 548 I+++ + P C RCRNHG + KGHK+ C + +C C C LI R+ + + ++ E +I + Sbjct: 34 ITEKGARKPKCARCRNHGMVSWLKGHKRHCHYKDCRCAKCNLIAERQRVMAAQVALKRQQAAEDAIAI 101 The following BLAST results are available for this feature:
BLAST of Dmd-1 splice form 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Dmd-1 splice form 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Dmd-1 splice form 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Dmd-1 splice form 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Dmd-1 splice form 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Dmd-1 splice form 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016325 ID=SMED30016325|Name=Dmd-1 splice form 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1012bpback to top protein sequence of SMED30016325-orf-1 >SMED30016325-orf-1 ID=SMED30016325-orf-1|Name=SMED30016325-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=325bp MNLTQCHSKINDSTGNYLEFNHCIVEDDKSENNEDVKPNLLKKEYSSKSRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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