Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Overview


Name	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Smed ID	SMED30016298
Length (bp)	5769

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30016298) t-SNE clustered cells

Violin plots show distribution of expression levels for Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30016298) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30016298) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30016298

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X2 cell	SMED30016298	SMESG000067297.1	SmedASXL_018623	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015

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Homology

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX547930.4 (pep chromosome:GRCz11:20:12830448:12834749:1 gene:ENSDARG00000098779.2 transcript:ENSDART00000164754.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX547930.4)

HSP 1 Score: 102.449 bits (254), Expect = 4.468e-21
Identity = 82/279 (29.39%), Postives = 143/279 (51.25%), Query Frame = 2

Query: 2999 PFTNDEVMLELKKADN-TSPGIDG--IQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRS----DCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIA 3811
            P T +E+   L+   N  +PG+DG  +++           LL +L N + S   +P S +  + +LT  P K D   +V +WRP+ALL   YK+ +  LA+RL     + +++HI Q     +   V++ S++   +E S+    K + +  LD + AF  V H+++W+     G    F  +I++LYS+  +     G +  P   I +G++QGC +S +L+S+A+ P+L  + R      C        PVK+ AYADDI ++    +++ K+ DI 
Sbjct:  470 PLTTEELFKALQSMKNGKAPGLDGLPVEFYKAYWFFLGEDLLEVLSNSL-SKGKLPVSCR--RAVLTLLPKKGD-LKEVKNWRPVALLCTDYKILSKALANRLRE--VMGQVIHIDQSYCVPNRSIVDNISLIRDVIEVSKIFGLK-VGLLTLDQEKAFDRVEHQFLWNTFEAFGFPIVFIDMIKVLYSDIGSILKINGGLSVP-FKINRGIRQGCALSGMLYSIALEPLLNKIRRELEGFKCENLF---PPVKLSAYADDIMVLFNGQNDINKLVDIV 737

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX649434.3 (pep chromosome:GRCz11:3:18270043:18274691:-1 gene:ENSDARG00000105157.2 transcript:ENSDART00000161140.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX649434.3)

HSP 1 Score: 100.138 bits (248), Expect = 1.928e-20
Identity = 99/358 (27.65%), Postives = 185/358 (51.68%), Query Frame = 2

Query: 2948 NAIF--NFSK---RSSVILNLEPFTNDEVMLELKKADN-TSPGIDGIQ---YRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSR-YSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI--GKSPVKILAYADDIALVACSVSELQK----ITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVG 3973
            N++F  N SK    S+ +L L P + DE+   +   +N  SPGIDGI    Y+  +L    G+ L L+ N  ++  ++P S +  + ++T  P K D    + +WRP++LL   YK+ +  LA RL++ +D  +++   Q     +    ++  ++  ALE ++ +  N    +  LD + AF  V HEY+  +L+  G S  F  +I+++YSN  +        +    + +GV+QGC +S +L+S+AI P+L  + R++ + F I    + V++ AYADD+ +   +  ++++    I +    ++A++ +    EK   L + +   D  +    ++ KR     F +YLGV +G
Sbjct:  460 NSVFFENLSKVDDESNAMLEL-PISQDELYTVMMSMENGKSPGIDGIPVDFYK--VLWPVIGEDLFLVLNDSLNKGSLPLSCR--RAVITLLPKKGD-LQKIGNWRPVSLLCSDYKILSRALAVRLSKVLD--QIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGIN--CGLISLDQEKAFDRVEHEYLKKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAPFDVQRGVRQGCAMSGMLYSIAIEPLLHRI-RAELKGFSIPHCNTQVQLSAYADDVIVFITNTDDVRRLECIINNFKKISSAKVNW----EKSEALLIGDWKRDPPLLPGGLKWKR----GFLKYLGVYLG 798

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkeyp-88h4.2 (si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-105])

HSP 1 Score: 99.3673 bits (246), Expect = 2.170e-20
Identity = 75/265 (28.30%), Postives = 125/265 (47.17%), Query Frame = 2

Query: 3185 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPV-LEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPV 3970
            L PKPDK+    D  +WRPI LL+  YK+ AS  A RL R   L+ +++  Q G    +H  C   N+ L   L   +   +    I +LD   AF +V HE++   L+  G    F  V+QMLY + ++        +P  P+++G++QGCP+S  LF   +  + ++ +  ++     I    ++I   ADD  L      ++  +  I  A +   G +    KC  + L     DT+    D +I+ +   E  +YLG+ +
Sbjct:   55 LIPKPDKDPTIID--NWRPITLLNFDYKLLASIFAKRLKR--HLHYIINETQTGFIKGRHISC---NTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGCPLSPFLFLFVVETLSIDILHNNNLVGINIFNREIRISQLADDTTLFLKDKDQVSPVLTIINAFSDASGLKLNLLKCEIICL----YDTL----DAKIENIPIKEEVKYLGINI 304

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU024870.2 (pep chromosome:GRCz11:25:23489979:23495448:1 gene:ENSDARG00000103841.2 transcript:ENSDART00000158200.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU024870.2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.053e-20
Identity = 75/265 (28.30%), Postives = 125/265 (47.17%), Query Frame = 2

Query: 3185 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPV-LEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPV 3970
            L PKPDK+    D  +WRPI LL+  YK+ AS  A RL R   L+ +++  Q G    +H  C   N+ L   L   +   +    I +LD   AF +V HE++   L+  G    F  V+QMLY + ++        +P  P+++G++QGCP+S  LF   +  + ++ +  ++     I    ++I   ADD  L      ++  +  I  A +   G +    KC  + L     DT+    D +I+ +   E  +YLG+ +
Sbjct:  520 LIPKPDKDPTIID--NWRPITLLNFDYKLLASIFAKRLKR--HLHYIINETQTGFIKGRHISC---NTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGCPLSPFLFLFVVETLSIDILHNNNLVGINIFNREIRISQLADDTTLFLKDKDQVSPVLTIINAFSDASGLKLNLLKCEIICL----YDTL----DAKIENIPIKEEVKYLGINI 769

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX544877.2 (pep chromosome:GRCz11:25:25310063:25315481:1 gene:ENSDARG00000103976.2 transcript:ENSDART00000164291.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX544877.2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.093e-20
Identity = 75/265 (28.30%), Postives = 125/265 (47.17%), Query Frame = 2

Query: 3185 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPV-LEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPV 3970
            L PKPDK+    D  +WRPI LL+  YK+ AS  A RL R   L+ +++  Q G    +H  C   N+ L   L   +   +    I +LD   AF +V HE++   L+  G    F  V+QMLY + ++        +P  P+++G++QGCP+S  LF   +  + ++ +  ++     I    ++I   ADD  L      ++  +  I  A +   G +    KC  + L     DT+    D +I+ +   E  +YLG+ +
Sbjct:  520 LIPKPDKDPTIID--NWRPITLLNFDYKLLASIFAKRLKR--HLHYIINETQTGFIKGRHISC---NTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGCPLSPFLFLFVVETLSIDILHNNNLVGINIFNREIRISQLADDTTLFLKDKDQVSPVLTIINAFSDASGLKLNLLKCEIICL----YDTL----DAKIENIPIKEEVKYLGINI 769

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 [Source:Xenbase;Acc:XB-GENE-984439])

HSP 1 Score: 103.219 bits (256), Expect = 7.838e-22
Identity = 68/210 (32.38%), Postives = 105/210 (50.00%), Query Frame = 2

Query: 3221 DVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSA------ALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS-PVKILAYADDIALVACSVSELQKITDIAVATAAE 3829
            DV +WRPIALL+   K+ A  L SRL        +L  G     +    V+  SI  A       LE  +  +++   +  LD   AF  V H+Y+W+ LR  G+ + F   + +LY    +F      +  N  +  GV+QGCP+S +L+  AI+P L AV   D   F   +  P+K++AYADD+ +V     E+  +TD A+ + +E
Sbjct:  236 DVKNWRPIALLNTDRKLLAKVLFSRL--------ILFSGTLLSREQFCTVKGRSIFGALLSIREVLETCKAQSSRRYVVG-LDQAKAFDRVDHQYLWATLRKYGIPDQFVEWLTVLYREGESFPLVNGWRGENFGVEAGVRQGCPLSPLLYVFAIDPFLRAVQALDLEGFRAPRCLPLKLVAYADDVTVVVSHPEEVNLLTD-AIESYSE 435

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000024583.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:942889:946017:1 gene:ENSXETG00000015161.1 transcript:ENSXETT00000024583.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 4.398e-19
Identity = 73/252 (28.97%), Postives = 114/252 (45.24%), Query Frame = 2

Query: 3143 DKTIPDSWKTFKTLLTPKPDK-----------------------EDKYDD-VSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAW------LDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI-GKSPVKILAYADDIALVACSVSELQKITD 3805
            D    + +KTFK LL P   K                       + K D+ + +WRPIALL+   K+ A  L SRL        +L  G    S     V+  SI  A L   R +     A  W      LD   AF +V H+Y+W++L   G+   F   I++LY    +F      Q  +  +  GV+QGCP+S +L+  A++P L  + R       + G  P++ +AYADD++++    +E++ +TD
Sbjct:  231 DGLTAEFYKTFKELLVPVLTKIFNGCLGSGLCESMRCSALILLSKGKDDERIENWRPIALLNSDRKILAKILFSRL--------ILFSGTLLSSCQFCTVKGRSIFGAILT-IREALESCKAHGWGKYLLSLDQTKAFDNVNHDYLWAVLSKYGIPGRFISWIKVLYEGAKSFPLINGWQGEDFEVGAGVRQGCPLSPLLYVFALDPFLRMLERKGLEGVCVPGGQPLRFVAYADDVSVIVSKQAEVEVVTD 473

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 5.342e-19
Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = 2

Query: 3125 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDC-RPFMIGKSPVKILAYADD 3757
            Y + IS   +P+S      +L PKP K+ +     S+RPI+LL+   K++A  LA RL R I    L++  Q G   +K          L+ +L  S        AIA LDI  AF +V   Y+W +L+ +G    F  ++Q+LY +         + T N  + +G +QGCP+S +LF+LAI P  +AV +    + + +  +  KI  YADD
Sbjct:  492 YGEAISTGILPESMYEAAIILLPKPGKDPQL--CESFRPISLLTTDVKIYAKILARRLARVI--KTLVNPDQIGFIPTKTTALNTRRLYLNLSLTPSNTGNR---AIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIQGYELKGTIEKIQLYADD 698

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: sulf1 (sulfatase 1 [Source:Xenbase;Acc:XB-GENE-966419])

HSP 1 Score: 94.3597 bits (233), Expect = 1.396e-18
Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 2

Query: 3011 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 3925
            DEVM     L LKK    SPG DG+      ++RD+L            +N  +++  +P S +    +L  K   + +   + +WRPIALL+V  K+ A  L +RL    +  L+   H   KG S     +     +  ALE  R        +A LD   AF  + H+Y+W LLR  G+   F   +++LY    +F         +  +  GV+QGCP+S +L+  AI+P +  +        P   GK+ +++ AYADD+ +V  S  E   +  I    +   G      KC    +    P  D+  V  +   RIK
Sbjct:  500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000037748.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460430.1:277026:279596:-1 gene:ENSXETG00000014464.1 transcript:ENSXETT00000037748.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 93.9745 bits (232), Expect = 1.491e-18
Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 2

Query: 3011 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 3925
            DEVM     L LKK    SPG DG+      ++RD+L            +N  +++  +P S +    +L  K   + +   + +WRPIALL+V  K+ A  L +RL    +  L+   H   KG S     +     +  ALE  R        +A LD   AF  + H+Y+W LLR  G+   F   +++LY    +F         +  +  GV+QGCP+S +L+  AI+P +  +        P   GK+ +++ AYADD+ +V  S  E   +  I    +   G      KC    +    P  D+  V  +   RIK
Sbjct:  500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.208e-21
Identity = 99/342 (28.95%), Postives = 159/342 (46.49%), Query Frame = 2

Query: 2966 SKRSSVILNL-EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL-PN-------VDMDTVISINDIRIKRLESNEFYRYLGV 3964
            S+    I NL  P +NDE+  E++    T+ G DG+        +   + +  L+N I+     P  +   +T+L PK   E    D + +RP+++ SV  + F   LA+R    I  + LL   Q+     DG  E+ S+LSA ++ +R    K L IA LD+K AF SV H  +   LR   +       I  +Y N+ T       +   I   +GV+QG P+S +LF+  ++ VL  +  +    F++G   +  L +ADD+ L+A +   LQ       A   E G E  P KC  L L P+       V+     ++ +  I +L   + ++YLGV
Sbjct:  306 SRMQGEIKNLWRPISNDEIK-EVEACKRTAAGPDGM---TTTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPK---EPGTMDPACFRPLSIASVALRHFHRILANR----IGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKI-KGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENT--GFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGV 633

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P16423|POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.707e-16
Identity = 82/314 (26.11%), Postives = 142/314 (45.22%), Query Frame = 2

Query: 3044 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC---GYLQLPNVDMDTVIS----INDIRIKRLESNEFYRYLGV 3964
            ++SPG DGI  +    +     L     N I+    +P S +  +T+  PK     +  D   +RPI++ SV+ +   + LA+RL   I+ +      Q+G    DGC ++ +I+   L HS +   +   IA LD+  AF S+ H  ++  LR  G  +GF   +Q  Y    T  +     +      +GVKQG P+S ILF+L ++ +L  +         +G +     A+ADD+ L A +   LQ + D  +   + +G +   +KC   G    P      + +    +    I  L+  + ++YLG+
Sbjct:  357 SSSPGPDGITPKSAREVPSGIMLRI--MNLILWCGNLPHSIRLARTVFIPKTVTAKRPQD---FRPISVPSVLVRQLNAILATRLNSSINWDPR----QRGFLPTDGCADNATIVDLVLRHS-HKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIG--AKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGI 658

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.052e-15
Identity = 71/254 (27.95%), Postives = 122/254 (48.03%), Query Frame = 2

Query: 2996 EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFA-YVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYAD 3754
             P   +E+   +K    ++PG DG+  + +         + L   +      +P  W   +T L PK   +   ++ S+WRPI + S + ++    LA RL   ++L    H  QKG ++ DG +  NS+L      SR    K   +  LD++ AF +V H  +   L+ +G+ EG + Y+   L  +T+T       QT  I I +GVKQG P+S  LF+  ++ +L ++  +      IG+  + +LA+AD
Sbjct:    4 RPIAREEIQCAIKGWKPSAPGSDGLTVQAITRTRLPRNFVQLHLLR----GHVPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVEL----HPAQKGYARIDGTLV-NSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIPVLAFAD 245

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.667e-15
Identity = 85/313 (27.16%), Postives = 146/313 (46.65%), Query Frame = 2

Query: 2945 WNAIFNFSKRSSVILNLEPFTNDEVMLELK-KADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDK----TIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQK----GGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKIL--AYADDIALVACSVSELQKITDI----AVATAAEIGF 3838
            W+ +   S+R    L   P T DE+   L+    N SPG+DG+    +         L   +++++++      +P S +  + +L+  P K D    + +WRP++LLS  YK+ A  ++ RL     L E++H  Q     G +  D     N  L   L H    T   LA   LD + AF  V H+Y+   L+       F   ++ +Y++           T  +   +GV+QGCP+S  L+SLAI P L  + R      ++ +  ++++  AYADD+ LVA  + +L++  +     A A++A I +
Sbjct:  431 WDGLPVVSERRKERLE-TPITLDELSQALRLMPHNKSPGLDGLT---IEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCR--RAVLSLLPKKGD-LRLIKNWRPVSLLSTDYKIVAKAISLRLKS--VLAEVIHPDQSYTVPGRTIFD-----NVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFL-CLLRKRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQEVYAAASSARINW 728

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03279|PO21_BRACO (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Bradysia coprophila OX=38358 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.732e-11
Identity = 91/329 (27.66%), Postives = 138/329 (41.95%), Query Frame = 2

Query: 3125 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGV----------PVGMDTD-----QNPYEILQR*FLTRKYLL 4039
            YN  +    +P   K  +T+ TPK +      D   +RP+++ SVI + F   LA R       +E     Q      DG   + S+L+A +  ++    K L IA LD+  AF SV H  +   +   G   G    I  +Y+N  T     G  +  +  I+ GV QG P+S  LF+LA    L A++      F I    V   AY+DD  L+A +V  LQ   D    T A+IG      K   + L     +  + I   R        +K L  ++ ++YLGV           V MD D     + P +  QR  L + +++
Sbjct:  197 YNIFVFYGRVPSPIKGSRTVFTPKIEGGP---DPGVFRPLSICSVILREFNKILARRFVSCYTYDER----QTAYLPIDGVCINVSMLTAIIAEAK-RLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELAS--ILAGVYQGDPLSGPLFTLAYEKALRALNNEG--RFDIADVRVNASAYSDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLGVVYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFVI 513

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2VFZ4 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Araneus ventricosus OX=182803 GN=pol_2507 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.041e-76
Identity = 146/392 (37.24%), Postives = 207/392 (52.81%), Query Frame = 2

Query: 2828 MTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVD----MDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQN 3991
            +T  +    KI +N+   + P F+K+ S    +S + G        S+  S IL L PFT  EV  +LK A+NTS G D + Y     ++     L  ++N  I  + IP SWK   T+L PK    +     ++WRPIAL S IYK+F  CLA+RLT WI+  E+L   QKG +  DG +EHN +L+ ALE +R    K L +A+LDI +AFGS+PH  ++  L   GV   F  +I  +Y+ +ST        T NI I+ GVKQGCPIS ILF + I+PV+  +  S         S  +ILA+ADDI L+A S  ELQ + D        +  +  P KC    L  +      D+   IN  R+  L+  EF+++LG P+G +   N
Sbjct: 1076 ITGQEGDFCKIPSNV---LHPYFEKVWS----RSDYDGG--VFVPTSEVRSPILEL-PFTVQEVAKKLKDAENTSAGPDRLTYFHWKSVEGAASFLCNVFNACIHFRKIPPSWKNSTTILLPKSGDPNL---PANWRPIALSSTIYKLFTKCLAARLTNWIEKFEVLSPCQKGFTPFDGVIEHNYVLNRALEDAR-KKRKDLCVAFLDISNAFGSLPHSAIFDGLTACGVGPAFVDIIMDIYTGSSTKVLSESGATENINILSGVKQGCPISGILFDICIDPVIREIQGS--------HSGHRILAFADDICLLAPSAIELQVMLDRINQLFESLNLKLNPAKCVSFHLSGIKPAGVRDSAFYINGTRLVSLKDGEFHKFLGKPIGFNPCPN 1445

HSP 2 Score: 105.916 bits (263), Expect = 1.041e-76
Identity = 122/461 (26.46%), Postives = 188/461 (40.78%), Query Frame = 1

Query: 4024 TKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 5391
             K + +S L  W ++ A K F++    FP RT +       +          I   LR S ++ L LP  +   Y Y   + G      L +E     I   F+LLTSK +  + I+ + LK     R+  K     E L+           +     F   RIA +      Q D       HE ++ I  +    V+        T +   + LC       E  C +   AS           +F GD + FA + F   AR + LS+   +P+ K     CR C+  + ET+ HVL  CK      + RHD     +   L+ K  +I        L     +R D++      K IF++D+  P  +   +FE   KA L+KYE+L +   T    FK  +   ++GALGS+  K  + LLK+ + RS LK   + C  S++ Q +R  +  H TG
Sbjct: 1456 AKAVMESGLSQWMRIDALKSFIYPAFQFPMRTSQFAKKHWHE----------IDRALRKSIKQTLSLPDRASNDYLYGHRKYGSFAIPILAEECELNRIDTAFKLLTSKDEVIKAISLEHLKATVRARMQ-KSSVSDEDLEAYMSATFSDNDNAFSNEFTCARIASARLKVHWQFDEGVPKLKHE-NISINASERKKVLFALRDHFRTGRSNRLLLCPKQGKAME--CVAKSRAST--------HFLFNGDYTSFAVYRFFSSARLDLLSLRGNQPWKKNVDMSCRGCDECDLETLPHVLNHCKGRSRAWTLRHDCVCNRLVKALLPKGKIIARNQDVGPL----GKRPDIVFQ--MGKEIFIIDVTIPFENRYASFESARKAKLDKYEHLVEFYSTN--GFKASVVPILVGALGSWDPKNDKFLLKV-MSRSYLKKFQRLCC-SDVLQWSRDIFIEHVTG 1884

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A183CIN3 (Reverse transcriptase domain-containing protein OS=Globodera pallida OX=36090 PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.620e-76
Identity = 126/342 (36.84%), Postives = 195/342 (57.02%), Query Frame = 2

Query: 2999 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSW-KTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMD---TVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            PF+  EV   LK+  NT+PG DGI+Y      DP   +L+ ++N     K +P SW K+   LL  K D+++    VS+WRPI+L   I K+ +S LA+RL  W   N+ +   QKG    DGC EHN +L + ++ ++ +  +  ++AWLD+ +AFGS+PH+ +++ LR+ G+SE    +I+ LY+++ T     +  TP I I  GVKQGCP+S I+F+L + P++ A+ R     + +  S   +LAYADD+ALVA S +ELQ++ D+    A   G  +   KC  L L     D   T  S+ +     L   +FY +LGVP G    Q+  ++L+R
Sbjct:  483 PFSPKEVWERLKRCSNTAPGPDGIRYAVWKKYDPGAHVLSAVFNVAQRLKHVPSSWNKSITVLLHKKGDRQE----VSNWRPISLSDTIGKLHSSVLANRLATWAIANDRISTSQKGFMPVDGCAEHNFVLQSIIQDAKRA-KRHCSVAWLDLTNAFGSIPHQTIFTALRWSGLSETSISIIRRLYASSYTQIRHSNGLTPEILIRAGVKQGCPLSPIIFNLGLEPIIRAI-RCQGVGYKLHGSQTSVLAYADDLALVAESAAELQRMLDVTSKVATWEGLSFNARKCATLDLNGKRKDALNTEFSVQNAHPPVLTIEQFYDHLGVPTGYGVAQSANKVLER 818

HSP 2 Score: 106.686 bits (265), Expect = 1.620e-76
Identity = 119/460 (25.87%), Postives = 201/460 (43.70%), Query Frame = 1

Query: 4048 LLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKT----RFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNSEE-ETMSHVLQSCKVHLVLA-SERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKE--RVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 5391
            L  WQK  A   FV   + F  +   ++   L+           +  ++R+  +K L LP+ + V   Y+S   GG     L        + H +RL+TS+ D +  ++ D LK V   R+  + P   +  D+LNG         + T     + R+R A +  +   +I   ++   +   L +             LR    +   + L    L K + G    + ++A       N  +  G+ + FA W FIHRAR + + +NA + +  G+KR CRRC+  + ET+ HVL  C  HL    + RH+  L  +       P+ I  V+ T   VP   E  R DL+  D  KK + ++D+  P  +    FER  +   +KYE L    +     F+V L+  I+G LG +      +L ++ IG+   + L+++  +S+  + +R  Y  H TG
Sbjct:  831 LAPWQKFDAVNTFVLPCIGFHLKNGVVQKTPLNA----------LDKKIRDFGKKWLNLPQRASVEPLYTSHAMGGMGLTPLNLLADISQLVHAYRLITSR-DLS-SLSMDLLKTVVYKRIR-QAPRPDQISDYLNGSMKGVFRQFESTDTPSAWTRLRQATARLSTKLRIGWKWSAVENRLLLQLNNEQLNPKTAEYCLRAAIREFYRLRL----LAKPDQGKVFAVTSAAT----ASNHFMQAGNFTRFADWRFIHRARLDCVPLNATRRFGHGDKR-CRRCHDGQLETLPHVLCHCWPHLGKGITRRHNAILDRLVKAFKPPPSTITRVNQT---VPGFNEAIRPDLLAVDEEKKTVLIIDVAMPFENRYEAFERCRQGKRQKYEALADHYRLQ--GFEVLLEAFIVGPLGGWDPHNEFVLNQLKIGQ-HYRRLMRKLMVSDAIRWSRDIYIEHITG 1262

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2L367 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_39 PE=4 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.445e-74
Identity = 125/331 (37.76%), Postives = 186/331 (56.19%), Query Frame = 2

Query: 2999 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYL----QLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 3979
            PFT  EV ++L+ A NTSPG D I Y D   +    K L  ++N  +  + IP SWKT  T+L PK    +  ++   WRPIAL S +YK+F  CLA+RL+ W +  ++L   QKG + HDG +EHN +L   L+ +R      + IAWLD+ +AFGS+PHE ++ +L   G    F  +I+ +YSN+ST        T +IPI+ GVKQGCPIS I+F + I+PV+  V   +           K+LA+ADD+ L+A S  ELQ       A+   +G    P K   L    + P    ++   I++ +I+ +E  +F+++LG PVG +
Sbjct:   69 PFTVKEVKVKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPKSGDPNIPNN---WRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKTD-VCIAWLDVTNAFGSIPHEAIFEMLSRSGAGLPFTELIRDIYSNSSTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLALNPSKSVALYVSGRTPVGVRNSPFFIDNAQIRNIEEGDFHKFLGKPVGFN 387

HSP 2 Score: 101.679 bits (252), Expect = 2.445e-74
Identity = 111/473 (23.47%), Postives = 198/473 (41.86%), Query Frame = 1

Query: 4009 KVVSDTKILA----DSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQ----TTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 5391
            K +SD  I+A    +S L  WQ++ A K F    L FP R  +      ++          I + +R   +  L LP+ +   Y Y+S + G        ++     I   F+LLTSK     ++    L      RL    P+  +  D++ G+        +  +F    +       + +  I +   ++   L     + G + L S  R+    +    L +   DS L + + G    +++ +   S  +      GD + F+ W F+H+ARTNTL +N  KP++K     CR C+  + ET++HVL  CK        RH++    + N L+   +   ++     + P+  +R DL+     +  ++++D+ CP  + +  F       +EKY +L    ++     K  +   ++GALGS+  K    L K  + +S L  L + C    I  S   +  H TG
Sbjct:  393 KYLSDLAIIATRLLESCLAPWQRIAALKTFFFPALQFPMRNAQFDKEKWAE----------IDAMIRPEIKNTLGLPERACNDYLYASRKVGAVGLPIAAEDADLHRIDTAFKLLTSKDPHVAELALAELLKTVKFRLRKPSPSDSDLGDFMTGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNTPRL-----LFGDLTLKSANRKKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASSHFMAN----GDYTRFSEWRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNSISDRVKNALLF--DGCTLISENQPIGPDG-QRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFESM--GLKATIIPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTG 831

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.201e-73
Identity = 113/328 (34.45%), Postives = 183/328 (55.79%), Query Frame = 2

Query: 3011 DEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTN--------KPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAV-SRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDT-VISINDIRIKRLESNEFYRYLGV 3964
            D++   +K A  ++ G+D I Y D+ L DP G++L  ++  I+ +   P   K  +T++ PKP K D Y D SSWRPI + S +Y++    L   L  WI LN++L   QK   K +GC +HN++L+  ++  R  TN        K L I +LD  +AFGSVP + +  + +  G+      +I+ LY +  T  +CG  +  N+ + +GVKQGCP+SM+LF++ IN ++ A+ +  D   + +G   ++ILAYADDIAL++ S  +LQ++   A      +G  + P KC  + +P+    T  I +N   IK +   + Y+YLG 
Sbjct:  284 DQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGKSD-YSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGT 610

HSP 2 Score: 138.272 bits (347), Expect = 2.201e-73
Identity = 126/481 (26.20%), Postives = 214/481 (44.49%), Query Frame = 1

Query: 4012 VVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIK------TYALSKPNGNSNISVNITSQLRNS-----FRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGK------------KTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCD----SYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRW 5373
            ++ +TK++ +S+L   QK+ AY+ F+HS+L F  R   I           +K   NSN S     +  +      F     LP      +FY + + GG      LDEY  Q+I + FRLL S+      +N+ ++K      L +K      G   +N   +I + +              +T + R+++A      T  I  +  + N    L +T ++   V+L     +   K +H +L      ++L++ +    S ++ SA     ++NK I  G +    W FIHRAR   L       +     LCR+C  ++ETMSH L +C +   L +ERHD     +   L +K    V+   T      ++ R D  IT  S  + +LV++KCP D+  +FE   +   +KY  + + ++   P  +V L T I+G LGS+  + S+ L  +G  + E+  +     + NI  S  +W
Sbjct:  627 MMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSE---DPTLNS-AIKHDLISHLNLK------GFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLINGH--LVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLLPTKLFSVSN----LCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYV----NELRPD--ITMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQW 1085

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2WJK9 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_26 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.036e-72
Identity = 125/346 (36.13%), Postives = 189/346 (54.62%), Query Frame = 2

Query: 2954 IFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 3979
             F   +   V L   PFT  EV ++L+ A NTSPG D I Y D   +    K L  ++N  +  + IP SWKT  T+L PK    +  ++   WRPIAL S +YK+F  CLA+RL+ W +  ++L   QKG + HDG +EHN +L   L+ +R      + IAWLD+ +AFGS+PH+ ++ +L   G    F  +I+ +YSN++T        T +IPI+ GVKQGCPIS I+F + I+PV+  V   +           K+LA+ADD+ L+A S  ELQ       A+   +G    P K   L +    P    ++   I++ +I+ +   +F+++LG PVG +
Sbjct: 1073 FFRQCEEGRVPLLDTPFTVKEVKIKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPKSGDANVPNN---WRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKTD-VCIAWLDVTNAFGSIPHDAIFEMLSRSGAGLPFTELIRDIYSNSTTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLSLNPSKSVALHVSGRTPVGVRNSPFFIDNAQIRNIAEGDFHKFLGKPVGFN 1406

HSP 2 Score: 99.3673 bits (246), Expect = 1.036e-72
Identity = 113/477 (23.69%), Postives = 201/477 (42.14%), Query Frame = 1

Query: 4009 KVVSDTKILA----DSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSK----CDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQ----TTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 5391
            K +SD  I+A    +S L  WQ++ A K F    L FP R  +      ++          I + +R   +  L LP+ +   Y Y+S + G        ++     I   F+LLTSK     D A      ++KF    RL    P+  +  ++++G+        +  +F    +       + +  I +   ++   L     + G + L S  R+    +    L +   DS L + + G    +++ +   S      +  GD + F+ W F+H+ARTNTL +N  KP++K     CR C+  + ET++HVL  CK        RH++    + N L+   +   ++     + P+  +R DL+     +  ++++D+ CP  + +  F       +EKY +L    +      K  +   ++GALGS+  K    L K  + +S L  L + C    I  S   +  H TG
Sbjct: 1412 KYLSDLAIIATRLLESCLAPWQRIAALKTFFFPALQFPMRNAQFDKEKWAE----------IDAMIRPEIKNTLGLPERACNDYLYASRKVGAVGLPIAAEDADLHRIDTAFKLLTSKDPHVADLALAELLKTVKF----RLRKPSPSDSDLGEFMSGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNSPRL-----LFGDLTLKSSNRRKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASS----HFMANGDYTRFSEWRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNSISDRVKNALLF--DGCTLISENQPIGPDG-QRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFENM--GLKATIVPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTG 1850

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 116.316 bits (290), Expect = 1.795e-25
Identity = 94/318 (29.56%), Postives = 159/318 (50.00%), Query Frame = 2

Query: 3044 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC-GYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGVPV 3970
            NT+PG D I  + L   DP G+ L  LY   +    +P ++K  +T L PK   ++  ++V +WRPI + S+I ++F+  +A RL R   +N      Q+G     GC E+  +L   + H +   ++ LA+ ++D   AF S+ HE++ S L    + +    +IQ  Y +  T       ++P+I +  GVKQG  +S ILF+LA++P+++++       + IG S V  LA+ADD+ L++ S   ++    +        G   +  KC G+L        T  ++ND          I  +E +E  +YLGV V
Sbjct:  441 NTAPGPDRITRQMLSDWDPSGEKLERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLARACPINPR----QRGFISAPGCAENLKVLQGLIGHCKKERSQ-LAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQGDSMSPILFNLAMDPLIQSLENLGS-GYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGA---TSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKV 749

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048385.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:135033:139457:1 gene:ENSAMXG00000032036.1 transcript:ENSAMXT00000048385.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.064 bits (253), Expect = 2.525e-21
Identity = 84/276 (30.43%), Postives = 140/276 (50.72%), Query Frame = 2

Query: 2996 EPFTNDEVMLELKKA-DNTSPGIDGIQYRDXXXXXXXXXXXXXXY-NKIISD-KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI---GKSPVKILAYADDIALVACSVSELQKITD 3805
            +P T +E++  +K   D  +PG DG+          E   L   Y N+ +S+ K   D +K+  TL+  K D+    +++ +WR I+LL++ YK+ A  L +RL +   L +++ I Q    K     ++  +L   + ++    +K   I  LD K AF  V  EY+W  L+  G    F  +I++LY  + T  +   I T      +GVKQGCP+S  L+ LAI+P+L  + ++D R   I    K   K+ A+ADDI +V  +  E + +T+
Sbjct:  317 QPITKEEIIEVIKGLHDGKTPGPDGLPAELYKACVNEVINLLQNYFNEGLSEGKMNEDFYKSVITLIYKKGDQ----NELDNWRQISLLNIDYKILAKILMNRLNQ--HLEKIIEIEQTCAVKGRYMWDNLGMLRELILNN---DDKDFYIVSLDQKKAFDFVSREYLWEALQHYGFPPNFIAMIKLLYKKSITQINVNGILTEPFETHRGVKQGCPLSAALYVLAISPLLNKI-KNDTRIKGIKIFDKKSFKLTAFADDITVVIKNQKEFRILTE 582

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.449 bits (254), Expect = 3.506e-21
Identity = 70/236 (29.66%), Postives = 118/236 (50.00%), Query Frame = 2

Query: 2987 LNLEPFTNDEVMLELKKAD-NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIG-QKGG-SKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEA 3685
            +++ P    EV   +K A   ++PG +G+ YR         K L  L   +     IP  W     +L PK   E     +  +RPI+LL+V  K+F S +A RL  ++  N L+    QK G +   GC+EHNS++   ++ +R +  K L + +LD+ +AFGSVPH  +W    F  V E  + +++  + +    +S G   T    +  G+  GC IS++ F++A+  ++ A
Sbjct:  367 MDVNPPRWSEVQEVVKAAKAGSAPGPNGVPYRSYKSAPDVLKFLWKLMAIVWKKGIIPKEWHRAGGVLIPK---EKDSVAIDQFRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTAR-AEKKDLHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGCTISLLAFTMAMEVIIRA 598

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000046127.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:16384999:16389616:1 gene:ENSAMXG00000035718.1 transcript:ENSAMXT00000046127.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 99.7525 bits (247), Expect = 5.604e-21
Identity = 66/205 (32.20%), Postives = 108/205 (52.68%), Query Frame = 2

Query: 3203 KEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDG-CVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVK---ILAYADDIALVACSVSELQKI 3799
            K D+Y+ +++WR + L+++ YK+FA  L +RL + +D  +NE    G KG S  D  C+    I +  L  S +       I  LD K AF S+  EY+W++L      + F  +I++LY  ++         T  I I +GVKQGCP+S  L+ LAINP+L ++ + +    +   S +    + A+ADDI +   +  EL  +
Sbjct:  145 KGDEYE-LNNWRQVTLMNIEYKIFAKVLMNRLEKILDKIINEEQTCGIKGRSMWDNLCIIRELITNKHLNESGF------YILALDKKKAFDSISREYLWAVLERYNFPDVFIKMIKLLYLKSTVQVKVNGKLTEKIDICRGVKQGCPLSAALYVLAINPLLTSLKKEEKLTGVYVNSELNKYVVSAFADDITIFIKNQDELNTV 342

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048276.1 (pep primary_assembly:Astyanax_mexicanus-2.0:17:7857318:7859867:1 gene:ENSAMXG00000040121.1 transcript:ENSAMXT00000048276.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 6.941e-20
Identity = 67/198 (33.84%), Postives = 104/198 (52.53%), Query Frame = 2

Query: 3194 KPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDC-RPFMIGKSPVKILAYADDIALVACSVS 3784
            KP K+    + SS+RP++LL+   KVFA  LA RL   I   +L+H  Q G  +     ++   L   LE +  S     A+  LD + AF  +   ++W++L+  G    F ++I  LY+N S   S GH+ +    + +G +QGCP+S  LF+LA+ P+ +AV ++   +P  I  S   I  YADDI L    +S
Sbjct:  520 KPGKDST--ECSSYRPLSLLNTDVKVFAKVLAKRLDSVIP--DLIHSDQTGFIRSRLASDNLRRLFHILEFAP-SQMLGSAVLSLDAEKAFDRLEWPFLWAVLKRFGFGSAFIHMIFTLYTNPSACVSTGHMISAKFLLERGTRQGCPLSPFLFALAVEPLAQAVRQNALIKPISIKDSLHHISLYADDILLYLSDIS 712

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000036683.1 (pep primary_assembly:ASM223467v1:19:23029986:23032853:-1 gene:ENSORLG00000028041.1 transcript:ENSORLT00000036683.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.064 bits (253), Expect = 4.056e-21
Identity = 96/338 (28.40%), Postives = 158/338 (46.75%), Query Frame = 2

Query: 2996 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS----PVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 3979
            +P T DE++  LKK +N  SPG DG+               L  +Y + I  + +  + K     L PKP+K+     + +WRPI LL+V YK+ A   A RL    +L+E++   Q G  K+     +  ++   L++S +  ++ L I +LD   AF +V H ++++ L+  G  E F  + +M Y + S+        +    I + V+QGCPIS   F   I   L ++   +C P ++G S     +KI   ADD AL     +++    D+A++T        G      KC  L + NV  +    I+ I IK + +     YLG+ +  D
Sbjct:  168 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKD 485

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000028058.1 (pep primary_assembly:ASM223467v1:18:21516917:21520645:1 gene:ENSORLG00000027382.1 transcript:ENSORLT00000028058.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 101.679 bits (252), Expect = 6.236e-21
Identity = 96/338 (28.40%), Postives = 158/338 (46.75%), Query Frame = 2

Query: 2996 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS----PVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 3979
            +P T DE++  LKK +N  SPG DG+               L  +Y + I  + +  + K     L PKP+K+     + +WRPI LL+V YK+ A   A RL    +L+E++   Q G  K+     +  ++   L++S +  ++ L I +LD   AF +V H ++++ L+  G  E F  + +M Y + S+        +    I + V+QGCPIS   F   I   L ++   +C P ++G S     +KI   ADD AL     +++    D+A++T        G      KC  L + NV  +    I+ I IK + +     YLG+ +  D
Sbjct:  455 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKD 772

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000043343.1 (pep primary_assembly:ASM223467v1:20:916169:918192:-1 gene:ENSORLG00000023710.1 transcript:ENSORLT00000043343.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 93.5893 bits (231), Expect = 6.009e-19
Identity = 66/241 (27.39%), Postives = 111/241 (46.06%), Query Frame = 2

Query: 3185 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISI 3907
            L PKP K+  Y D  +WRPI LL+  YK+ A   A R+     LN ++   Q G   +     +  ++   L++S    +    + +LD   AF +V H +++  L+  G  + F  VI+ LY+N +      H  +P   I +G++QGCPIS  LF L    + + +  S  R   I    + +   ADD  L     S++    +I  + +         +KC  L + + D D++ +I
Sbjct:    8 LIPKPHKDLLYID--NWRPICLLNNDYKILALVFAKRIKS--VLNSVIDESQSGFLPNRHITNNIRLVLDILDYSYLIADDSFML-FLDFFKAFDTVEHNFLYRSLQKFGFGDYFCKVIKTLYNNATCSIKLKHGSSPRFDIKRGIRQGCPISPYLFLLVAQLLCDHIKSSPLRGISIAGRSIVVSQLADDTTLFLKDSSQIPLAINIIKSFSKASSLSLNLKKCELLPIKSCDSDSLFNI 243

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000026767.1 (pep primary_assembly:ASM223467v1:20:16240812:16243805:1 gene:ENSORLG00000027933.1 transcript:ENSORLT00000026767.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 94.3597 bits (233), Expect = 8.604e-19
Identity = 66/287 (23.00%), Postives = 134/287 (46.69%), Query Frame = 2

Query: 3125 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTD 3985
            +N+I+  + +P+ W+  +++L P    +    + SS+R I L+S   K++   + +RL + +++ E     Q G   H    +    L   +E  R    K L   ++D++ A+  VP E +W  +R  GV+E +  V+Q +Y  + T   C   QT    +  G+ QG  +S  LF++ ++ + + V +         +SP  ++ +ADDI + + S  ++++  +         G +    K  Y+ L   D    + +    +K+++    ++YLG  V  D +
Sbjct:  557 FNRILESEKMPEEWR--RSVLVPIFKNKGDMQNCSSYRGIKLMSHTMKLWERVVEARLRKKVEICEQ----QYGFMPHKSTTDAIFALRMLMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLMDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGTEVKKVQE---FKYLGSTVQCDGE 823

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000035976.1 (pep primary_assembly:ASM223467v1:16:7718738:7727892:1 gene:ENSORLG00000029559.1 transcript:ENSORLT00000035976.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 91.6633 bits (226), Expect = 9.538e-19
Identity = 64/202 (31.68%), Postives = 96/202 (47.52%), Query Frame = 2

Query: 3170 TFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI--GKSPVKILAYADDIALV 3769
            T K L   K D+ D    + ++RPI LL+  YK+  S LA RL     L  +L   Q  G +     +    L   +EH   S    L +   D   AF  V H ++W +L   G  E F   I+ LY+  S+   C    T    I + ++QGCP+S +LFS+A+ P+   ++  D    ++      +K+LAYADD +LV
Sbjct:  151 TVKLLFKNKRDRAD----LDNYRPITLLNTDYKILTSVLAERLREV--LPSILGSSQAYGVQGRQITDTVLSLLCTVEHMERSGFFFLNV---DFSKAFDRVEHGFLWRVLDLFGFGELFISRIRALYTTASSRVLCNGHSTGVFSITRSIRQGCPLSAMLFSIAVEPLAGVITADDSIRGVVTPAGREIKMLAYADDTSLV 343

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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 1697.56 bits (4395), Expect = 0.000e+0
Identity = 865/1337 (64.70%), Postives = 1039/1337 (77.71%), Query Frame = 2

Query:    2 EYVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKFDNETLKRKLSVDIDDNQSTTIVTNDIQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            +YV NY+RNC  ++SI++IE+ ++L  D+IE W P ++ MI   SY+ ++CKERLL+LRQ  +S EID++HNIISP TI  IN+FL  ++   P+K  QLK L  L N IN   +ES+   I KAKRFL+F+IRDKK FL+ +++ +RI  +C KICT NM+  I  II  L   +T     Q  + S S T+ N ++SV+      S  + D    E+    ++  +KR+L VDID+ +S       I   + +  +I +                         ETDADST   I  N         DP IWFTD++ID +L+NHI + +F SI CFIVEIL  N  +D+FPIPE VFKAQ+ILCPLNI+  HWILFVYCK+SL SYF+DPI   RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAMMISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNG++K SSA+QAFL+KQNSC+SSLL E+FK + NTTVLSPELT  ++AQN  +IRENVTF+QF+GI+H+IS++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F  +HNI+H SIT DD  LFASAFI L+E +IF  Q+S T  SE L S KI+QANEIC NLN +N KI EEIT+KYF  LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL  TE+   +C+  RNK+NEIKETPGRV+N+G  P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG  ISSLLP+I+E KK   S  TK  KI K NLNLE RK+KI  L+  V +  VN+IID+I  QFP+R+K+ HKPYLGN K    KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL +
Sbjct: 4446 DYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESI------IHTTISKSALISE-------------------------ETDADSTIKIIEINKPLNESD-RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDK 5748

HSP 2 Score: 1660.58 bits (4299), Expect = 0.000e+0
Identity = 855/1340 (63.81%), Postives = 1027/1340 (76.64%), Query Frame = 2

Query:    2 EYVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKFDNETLKRKLSVDIDDNQSTTIVTNDIQQD-VPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVIS--VIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            +YV NY+RNC  ++SI++IE+ ++L  D+IE W P ++ MI   SY+ ++CKERLL+LRQ  +S EID++HNIISP TI  IN+FL  ++   P+K  QLK L  L N IN   +ES+   I KAKRFL+F+IRDKK FL+ +++ +RI  +C KICT NM+  I  II  L   +T     Q  + S S T+ N ++SV+      S  + D    E+    ++  +KR+L VDID+ +S    T+  QQ+ + +  +I K                         ETDADST   I  N         DP IWFTD++ID +L+NHI + +F SI CFIVEIL  N  +D+FPIPE VFKAQ+ILCPLNI+  HWILFVYCK+SL SYF+DPI   RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAMMISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNG++K SSA+QAFL+KQNSC+SSLL E+FK + NTTVLSPELT  ++AQ                I H +   ++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F  +HNI+H SIT DD  LFASAFI L+E +IF  Q+S T  SE L S KI+QANEIC NLN +N KI EEIT+KYF  LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL  TE+   +C+  RNK+NEIKETPGRV+N+G  P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG  ISSLLP+I+E KK   S  TK  KI K NLNLE RK+KI  L+  V +  VN+IID+I  QFP+R+K+ HKPYLGNK     KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL +
Sbjct: 2097 DYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESIIHTTSGTQQNHISKSALISK-------------------------ETDADSTIKIIEINKPLNESD-RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDK 3392

HSP 3 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 345/468 (73.72%), Postives = 404/468 (86.32%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 5412
            K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IASA++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D  NL KY++L+ +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 3392 KAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3859

HSP 4 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 345/468 (73.72%), Postives = 404/468 (86.32%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 5412
            K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IASA++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D  NL KY++L+ +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 5748 KAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6215

HSP 5 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 273/456 (59.87%), Postives = 343/456 (75.22%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 5376
            KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR   RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL  VT PRLGIK PTL +  +W+NGK+S   HSG+KTRF R+R +I +F+R H I + F I     S+ ITT++ GT I+   LR+T SK+LH AL DSYL KWE    SN++ SAI+L P++NK IFR DL++F W FIHRARTNTLS  AKP+  GE RLCRRC SE+ET+ HVLQ+CK++  LA+ RH+ CL  I + + + P L+VVVDH C+LVP S ERVDLIIT+  KK I LVDMKCP DSV+ F+ +D  NLEKY  L+ +IQ  KPD+KV+L TCI+G+LGS  +KT +LLLK+G+  + + GL+KECAISNI  SA+  Y
Sbjct: 1073 KVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527

HSP 6 Score: 228.794 bits (582), Expect = 0.000e+0
Identity = 103/173 (59.54%), Postives = 139/173 (80.35%), Query Frame = 2

Query: 3494 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            +LL+ + VS  F  ++Q+LY++TS+FY C  +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+  PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA  IGFEYRPEKC Y+Q P V+  + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ +
Sbjct:  901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSK 1073

HSP 7 Score: 600.127 bits (1546), Expect = 1.043e-176
Identity = 355/917 (38.71%), Postives = 540/917 (58.89%), Query Frame = 2

Query:  371 KAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTV--NTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKF---------DNETLKRKLSVDIDDNQSTTIVTND---IQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISG---GGLPKFMEIIKRNGIKKISSASQA--------FLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPN----RIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 3034
            K+KRF+YF++RD K +L+ N+  FR+ + C+K CT+ MS  I+ II  L P + +VKD   +  +  +   +EN+ +   P++      +      E  +           +N  L     V+ D N+S    +N    I +++  P   +  +RNTVK +               K T  +                  DP+IWF+D +ID +LE HI N     IKCFIV ILC+N+++++  IP ++  A+++ CPLNINN+HWILFVYCK S  SYF+DPI  NR++  NK +ALKI +ALN  F+LK A++++PH + +YQNNN+DCGPF CAYA++IS +  +FP+ F++ IR++VH+ ++       +I G   GG    M++   N  K I+    +         L  Q  CVSS++ ++++N    +VLS ELT  +IAQNN +I +NVTFKQF GI+H++ VIP   +W L+++S+    S+IF+F  RT+ +RLI IG  +TDYLN+F + ++ V F  +H+I H +    D   FAS FI L E +++E  +    + +SL+  K +   EI   LNL+N KIT++I  +YF  LKL D+++LLN T+C AI DDCTQY+ ++LN EC++KA VIFAI++PPK  E LL+IDY+T+E+Y L+P T          C ++  K+NE++E+ GR +  G   HDIRGSGL+SK+LICAFI++Y  D  L N+NL EIG  ++SL+P+++     +   + K    N   LNL+ RK KI  L+ K+ + +V++II  I    P     + K   +PYLG   N   K N     A F+T+MK+TV +ILN+  V I P FQ+I++NF         W+ +  FSK S  +L L   +++E++  L+
Sbjct:   17 KSKRFIYFLLRDSKKYLIRNQ-TFRLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENI-DITKPIVIEEIHCMKCNSILEKCILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSPITENIINPPTKRTGQRNTVKKQ-----------PSKPKSTICNKYLTIDN----------RDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQM-------EIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 1633.23 bits (4228), Expect = 0.000e+0
Identity = 841/1339 (62.81%), Postives = 1014/1339 (75.73%), Query Frame = 2

Query:    2 EYVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKFDNETLKRKLSVDIDDNQSTTIVTNDIQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVIS--VIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            +YV NY+RNC  ++SI++IE+ ++L  D+IE W P ++ MI   SY+ ++CKERLL+LRQ  +S EID++HNIISP TI  IN+FL  ++   P+K  QLK L  L N IN   +ES+   I KAKRFL+F+IRDKK FL+ +++ +RI  +C KICT NM+  I  II  L   +T     Q  + S S T+ N ++SV+      S  + D    E+    ++  +KR+L  + D + +  I+      ++ +P                              E+D                    DP IWFTD++ID +L+NHI + +F SI CFIVEIL  N  +D+FPIPE VFKAQ+ILCPLNI+  HWILFVYCK+SL SYF+DPI   RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAMMISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNG++K SSA+QAFL+KQNSC+SSLL E+FK + NTTVLSPELT  ++AQ                I H +   ++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F  +HNI+H SIT DD  LFASAFI L+E +IF  Q+S T  SE L S KI+QANEIC NLN +N KI EEIT+KYF  LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL  TE+   +C+  RNK+NEIKETPGRV+N+G  P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG  ISSLLP+I+E KK   S  TK  KI K NLNLE RK+KI  L+  V +  VN+IID+I  QFP+R+K+ HKPYLGNK     KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL +
Sbjct: 2097 DYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLE-ETDADSTIKII------EINKP----------------------------LNESD-------------------RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDK 3363

HSP 2 Score: 1516.52 bits (3925), Expect = 0.000e+0
Identity = 749/1029 (72.79%), Postives = 871/1029 (84.65%), Query Frame = 2

Query:  926 HDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGGLPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
             DP IWFTD++ID +L+NHI + +F SI CFIVEIL  N  +D+FPIPE VFKAQ+ILCPLNI+  HWILFVYCK+SL SYF+DPI   RH F NKT AL++TMALN+LF+LKAAMTFHPH++F YQ N+YDCGP+ICAYAMMISG WQSFP+ F++IIRKEVHQ +LF QQKD K+SGGGLPKFMEIIKRNG++K SSA+QAFL+KQNSC+SSLL E+FK + NTTVLSPELT  ++AQN  +IRENVTF+QF+GI+H+IS++PND NW L++FSLV G SYIFNF +R +TERLI IGENMT+YLNKF IS++KV F  +HNI+H SIT DD  LFASAFI L+E +IF  Q+S T  SE L S KI+QANEIC NLN +N KI EEIT+KYF  LKL+ NFMLLN TMC+AILDDCT++L ++LNYE +IKAQVIFAI+APPK+RE LLIIDY TDEYYI+NPTTL  TE+   +C+  RNK+NEIKETPGRV+N+G  P+DIRGSGLVSK+LICAFIK+Y NDLPL+NLNLREIG  ISSLLP+I+E KK   S  TK  KI K NLNLE RK+KI  L+  V +  VN+IID+I  QFP+R+K+ HKPYLGN K    KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL +
Sbjct: 4663 RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDK 5690

HSP 3 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 345/468 (73.72%), Postives = 404/468 (86.32%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 5412
            K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IASA++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D  NL KY++L+ +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 3363 KAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3830

HSP 4 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 345/468 (73.72%), Postives = 404/468 (86.32%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 5412
            K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IASA++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D  NL KY++L+ +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 5690 KAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6157

HSP 5 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 273/456 (59.87%), Postives = 343/456 (75.22%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 5376
            KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR   RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL  VT PRLGIK PTL +  +W+NGK+S   HSG+KTRF R+R +I +F+R H I + F I     S+ ITT++ GT I+   LR+T SK+LH AL DSYL KWE    SN++ SAI+L P++NK IFR DL++F W FIHRARTNTLS  AKP+  GE RLCRRC SE+ET+ HVLQ+CK++  LA+ RH+ CL  I + + + P L+VVVDH C+LVP S ERVDLIIT+  KK I LVDMKCP DSV+ F+ +D  NLEKY  L+ +IQ  KPD+KV+L TCI+G+LGS  +KT +LLLK+G+  + + GL+KECAISNI  SA+  Y
Sbjct: 1073 KVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527

HSP 6 Score: 228.024 bits (580), Expect = 0.000e+0
Identity = 103/173 (59.54%), Postives = 139/173 (80.35%), Query Frame = 2

Query: 3494 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            +LL+ + VS  F  ++Q+LY++TS+FY C  +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+  PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA  IGFEYRPEKC Y+Q P V+  + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ +
Sbjct:  901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSK 1073

HSP 7 Score: 599.356 bits (1544), Expect = 1.834e-176
Identity = 355/917 (38.71%), Postives = 540/917 (58.89%), Query Frame = 2

Query:  371 KAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTV--NTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKF---------DNETLKRKLSVDIDDNQSTTIVTND---IQQDVPQPKIIKKTRRNTVKPK*RCXXXXXXXXXXXXKETDADXXXXXXXXXXXXXXXXXHDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISG---GGLPKFMEIIKRNGIKKISSA--------SQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPN----RIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 3034
            K+KRF+YF++RD K +L+ N+  FR+ + C+K CT+ MS  I+ II  L P + +VKD   +  +  +   +EN+ +   P++      +      E  +           +N  L     V+ D N+S    +N    I +++  P   +  +RNTVK +               K T  +                  DP+IWF+D +ID +LE HI N     IKCFIV ILC+N+++++  IP ++  A+++ CPLNINN+HWILFVYCK S  SYF+DPI  NR++  NK +ALKI +ALN  F+LK A++++PH + +YQNNN+DCGPF CAYA++IS +  +FP+ F++ IR++VH+ ++       +I G   GG    M++   N  K I+          +   L  Q  CVSS++ ++++N    +VLS ELT  +IAQNN +I +NVTFKQF GI+H++ VIP   +W L+++S+    S+IF+F  RT+ +RLI IG  +TDYLN+F + ++ V F  +H+I H +    D   FAS FI L E +++E  +    + +SL+  K +   EI   LNL+N KIT++I  +YF  LKL D+++LLN T+C AI DDCTQY+ ++LN EC++KA VIFAI++PPK  E LL+IDY+T+E+Y L+P T          C ++  K+NE++E+ GR +  G   HDIRGSGL+SK+LICAFI++Y  D  L N+NL EIG  ++SL+P+++     +   + K    N   LNL+ RK KI  L+ K+ + +V++II  I    P     + K   +PYLG   N   K N     A F+T+MK+TV +ILN+  V I P FQ+I++NF         W+ +  FSK S  +L L   +++E++  L+
Sbjct:   17 KSKRFIYFLLRDSKKYLIRNQ-TFRLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENI-DITKPIVIEEIHCMKCNSILEKCILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSPITENIINPPTKRTGQRNTVKKQ-----------PSKPKSTICNKYLTIDN----------RDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQM-------EIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899

HSP 8 Score: 200.675 bits (509), Expect = 5.641e-51
Identity = 107/247 (43.32%), Postives = 155/247 (62.75%), Query Frame = 2

Query:    2 EYVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFESPLKFDNETLKRKLSVDIDDNQSTTIVTN 742
            +YV NY+RNC  ++SI++IE+ ++L  D+IE W P ++ MI   SY+ ++CKERLL+LRQ  +S EID++HNIISP TI  IN+FL  ++   P+K  QLK L  L N IN   +ES+   I KAKRFL+F+IRDKK FL+ +++ +RI  +C KICT NM+  I  II  L   +T     Q  + S S T+ N ++SV+      S  + D    E+    ++  +KR+L VDID+ +S    TN
Sbjct: 4417 DYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETG-STEHARVKRRLEVDIDEVESIIHTTN 4662

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1)

HSP 1 Score: 1216.06 bits (3145), Expect = 0.000e+0
Identity = 616/1032 (59.69%), Postives = 767/1032 (74.32%), Query Frame = 2

Query:  926 HDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGG---LPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
             D KIWFTD++ID +LE+HI N +F  +KCFIVEIL +N + +IFP+P+N+FKAQ+ILCPLNIN +HWILFVYCK + +SYFVDPI   RH+  NK+ ALKITMALN LFDLKAA+TFHPHD+  YQ+NNYDCGP+ICAYAM+IS EWQ+FP +F+E IRK VH+F+    Q  PK+SGGG   LP F          K++   +A L  +NSCV SL+ EWF NKN  TVLSPELT  +IA NN++IRENVTF+QF+ +++VI+VIPN+ +W LY+FS V   SYI NF+ R L ERL+ IGE+MTDYLNKFFIS  KV F  +HN  H S   +DPH FASAFIE +E   F N +S T I+E+L SFK+Q  NEICKNLNL+NF I +EI +KYFK L L  NF+ LN+ MC+AI+DDCT+YLN++LNY+ +IKAQVIFAIVAPPK+RE L IIDYNTDEYY+LNPTTL   +N+L  CK LRNK+NEI+E+P RVLN+G  PHDIRGSGLVSK+L C+++ +Y NDLPLV LNLR+IGN +SS LP+ +E KK ++      N+ +K + NL+ RK KI  L+ KV   NV++I+DVI +Q   +   THKPYLGN +    +INK  LI NF +DMK+TVN I+N++DV +RP ++ I++NF  K P    W+ +F F  RS   L L+  +N EV+ ELKKADNTSPG+DGI+YRD+++LDPEGKLLT L+NKIIS K IPDSWK+FKTLL PKP K DKYD VSSWRPIALLSVIYK+FASCLA+RLT WI+ N LLHIGQKGGS+HDGCVEHNSILS+ALEHS+YS N  LAIAWLDIKDAFGSVPH YMWSLLRF+G+   F+                                                     RS C PFMIG+S VKILAYADDIALV+ S  +LQ++T+IAV  A+EIGFEYRPEKCGY++LP ++ ++ I INDI+IKRL S+EFY+YLGVPVG +TDQ+PY+IL++
Sbjct:  585 RDSKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSACKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIASEIKKVKSLENNIINENHKESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTHKPYLGNIERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDMVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPGKGDKYDSVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGLMRNFSI----------------------------------------------------RSKCEPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKK 1564

HSP 2 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 314/452 (69.47%), Postives = 372/452 (82.30%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSA 5364
            KVVSDT+ +ADSDLLGWQKLKAYKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENGGANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI  PTLQE  DW+NGK+               ++ I    + H I+I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IASAI+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L    NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++  F  +D  NL+KY++L+ +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SA
Sbjct: 1564 KVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEP--------------KLGI---LKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKIQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSA 1998

HSP 3 Score: 503.827 bits (1296), Expect = 7.914e-146
Identity = 232/331 (70.09%), Postives = 278/331 (83.99%), Query Frame = 1

Query: 4405 RLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTL 5397
            RLGI  PTLQE  DW+NGK+  P HSGKKTRFQR RIAI+FF + H I+I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IASAI+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L    NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++  F  +D  NL+KY++L+ +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SARRW+YHKTG L
Sbjct: 2052 RLGIINPTLQETFDWINGKEPKPWHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWHYHKTGIL 2382

HSP 4 Score: 154.836 bits (390), Expect = 4.151e-37
Identity = 106/220 (48.18%), Postives = 142/220 (64.55%), Query Frame = 2

Query:    5 YVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRISQNCSKICTANMSACITEII--DYLSPYITSVKDNQTVNTSVSATVENVSESVDPLLEVPSSPVTDTETFES 658
            YV+NY+ NC LMHSI ++E+C  L  DNIE W P++I +I SSS+Y ++CKE+LLKL+Q  +S EID+IHNII P TI EINNFL  ++ +   K DQLK L+ LG KIN    +++  D+ KAKR LYFIIRDKK FL  + F + I  NC KICT  MS  IT++I  + L     +V DN   N  VS      +E+++ L+  P +P  DT   E+
Sbjct:  360 YVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTCLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYHIPFNCRKICTLKMSDFITKLIQSNELFEEREAVVDN---NIDVSP-----NENLNILIVEPVNPTPDTVIVET 571

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1)

HSP 1 Score: 746.503 bits (1926), Expect = 0.000e+0
Identity = 381/676 (56.36%), Postives = 490/676 (72.49%), Query Frame = 2

Query:  926 HDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGG---LPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRXXXXXXXXXXVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGN 2944
             DPKIWFTD++ID +LE+HI N +F  +KCFIVEIL +N + +IFP+P+N+FKAQ+ILCPLNIN +HWILFVYCK + +SYFVDPIF   H+  NK+ ALKITMALN LFDLKAA+TFHPHD+  YQ+NNYDCGP ICAYAM+IS EWQ+FP +F+E IRK VH+F+    Q  PK+SGGG   LP F          K++   +A L  +NSCV SL+ E F NKN  TVLSPELT   IA NN++IRENVTF+QF+ +++VI+VIPN+ +W L                 ++L ERL+ IGE+MTDY NKFFIS  KV F  +HN  H S   +DPH FASAFIE +E   F N +S T I+E+L SFK+Q  NEICKNLNL+NF I +EI +KYFK L L  NF+ LN+ MC+AI+DDCT+YLN++LNY+ +IKAQVIFAIVAPPK+RE L IIDYNTDE Y+LNPTTL   +N+L  CK LRNK+NEI+E+P RVLN+G  P+DIRGSGLVSK+L C+++ +Y NDLPLV LNLR+I + +SS LP+++E K  ++      N+ +K + NL+ RK KI  L+ KV   NV++I+DVI +Q   +   THKPYL NK+    +INK  LI NF +DMK+TVN I+N++DV + P   K     LI+ P +G+
Sbjct:   92 RDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPIFRKWHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPHICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEGFSNKNYITVLSPELTLNFIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCL-----------------QSLNERLVSIGESMTDYPNKFFISTAKVNFIVNHNQIHFSFRSEDPHFFASAFIEFLEKFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDECYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPYDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIDSVVSSFLPIVSEIKNVKSLENNIINENHKESENLKERKNKIDQLLIKVFKMNVDEIVDVIFDQISIKTVPTHKPYLDNKERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVIPDSWKSFKTLLIQKPSKGD 750

HSP 2 Score: 389.037 bits (998), Expect = 2.920e-112
Identity = 187/252 (74.21%), Postives = 211/252 (83.73%), Query Frame = 2

Query: 3128 NKIISD---KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL 3874
            N II+D     IPDSWK+FKTLL  KP K DKYD VSSWRPIALLSVIYK+F SCLA+RLT  I+ N LLHIGQKG S+HDGCVEHNSILS+ALEHS+Y  N  LAIAWLDIKDAFGSVPH YMWSLLRF+GV E F  +I+ + S+ STFYSCG I TPNI I QGVKQGCPISMILF+LAINPVLEA+SRS C PFMIG+S VKILAYADDIALV+ S  +LQ++T+IAVA A+EIGFEYR EKCGY++L
Sbjct:  720 NTIINDVDVDVIPDSWKSFKTLLIQKPSKGDKYDSVSSWRPIALLSVIYKLFTSCLANRLTFCINKNNLLHIGQKGDSRHDGCVEHNSILSSALEHSKYGKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTIIERMDSDKSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAISRSKCEPFMIGESTVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRSEKCGYIEL 971

HSP 3 Score: 387.497 bits (994), Expect = 1.204e-111
Identity = 186/253 (73.52%), Postives = 209/253 (82.61%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIF 4767
            KVVSDT+ +ADSDLLGWQKLK YKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENG ANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI  PTLQE  DW+N K+  P HS KKTRFQR RIAI+FF + H I I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE G TSN IASAI+LSP INKAI+
Sbjct:  978 KVVSDTRKIADSDLLGWQKLKTYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGMANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINVKELKPRHSCKKTRFQRARIAIAFFKKEHDIYIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGRTSNFIASAIKLSPKINKAIY 1230

[Close]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000046455.1 (SMESG000046455.1)

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 338/465 (72.69%), Postives = 398/465 (85.59%), Query Frame = 1

Query: 4009 KVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSE 5403
            KVVSDT+ +ADSDLLGWQKLKAYKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENGGANCVDLLDEYHTQTIT+ FRL TS C+FARK+N DSL FV GPRLGI  PTLQE  DW+NGK+  P HSGKKTRFQR RIAI+FF + H I+I F +TN + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IASAI+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L    NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++  F  +D  NL+KY++L+ +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLL +CA+SNI+ SARRW+YHKTG L +
Sbjct: 1823 KVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITYFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEPKPRHSGKKTRFQRARIAIAFFKKEHDINIMFIVTNGKPSLFITSEKGGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLIDCALSNISHSARRWHYHKTGILKD 2287

HSP 2 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 343/553 (62.03%), Postives = 429/553 (77.58%), Query Frame = 2

Query:  926 HDPKIWFTDENIDKFLENHIRNSDFVSIKCFIVEILCANLEKDIFPIPENVFKAQVILCPLNINNAHWILFVYCKSSLMSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQNNNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKISGGG---LPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTVLSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLVSGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHISITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKNLNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLNYECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFICKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDLPLVNLNLREIGNTISSLLPVIN 2575
             DPKIWFTD++ID +LE+HI N +F  +KCFIVEIL +N + +IF + +N+FKAQ+ILCPLNIN +HWILFVYCK + +SYFVDPI   RH+  NK+ ALKITMALN LFDLKAA+TFHPHD+  YQ+NNYDCGP+ICAYAM+IS EWQ+FP +F+E IRK VH+F+    Q  PK+SGGG   LP F          K++   +A L  +NSCV SL+ EWF NKN  TVLSPELT  + A NN++IRENVTF+QF+ +++VI+VIPN+ +W LY+FS V   SYI NF+ R L ERL+ IGE+MTDYLNKFFIS  KV F  +HN  H S   +DPH FASAFIE +E   F N +S T I+E+L SFK+Q  NEICKN NL+NF I +EI +KYFK L L  NF+ LN+ MC+AI+DDCT+YLN++LNY+ +IKAQVIFAIVAPPK+RE L IIDYNTDEYY+LNPTTL   +N+L  CK LRNK+NEI+E+P RVLN+G  PHDIRGSGLVSK+L C+++ +Y NDLPLV LNLR+IGN +SSLLP+++
Sbjct: 1064 RDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFSMSDNLFKAQIILCPLNINGSHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLFAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNFNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSLLPILS 1616

HSP 3 Score: 329.331 bits (843), Expect = 0.000e+0
Identity = 151/210 (71.90%), Postives = 182/210 (86.67%), Query Frame = 2

Query: 3383 ILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQR 4012
            ILS+A EHS+YS N  LAIAWLDIKDAFGSVPH YMWSLLRF+GV E F  +++ +YS+TSTFYSCG I TPNI I QGVKQGCPISMILF+LAINPVLEAVSRS C PFMIG+S VK+LAYADDIALV+ S  +LQ++T+IAV  A+EIGFEYRPEKCGY++LP ++ ++ I INDI+IKRL S+EFY+YLGVPVG +TDQ+PY+IL++
Sbjct: 1614 ILSSAFEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTILERMYSDTSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAVSRSKCEPFMIGESAVKVLAYADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKK 1823

HSP 4 Score: 95.1301 bits (235), Expect = 4.788e-19
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 2

Query:    5 YVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFANCKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQLKTLSKLGNKINEFSNESNFPDID 370
            YV+NY+ NC LMHSI ++E+C  L  DNIE W P++I +I SSS Y ++CKE+LLKL+Q  +S EID+IHNII P TI EINNFL  ++ +   K DQLK L+ L    +       FP+ D
Sbjct:  944 YVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSDYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTSLETDADSTIINYFFPERD 1065

The following BLAST results are available for this feature:

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
BX547930.4	4.468e-21	29.39	pep chromosome:GRCz11:20:12830448:12834749:1 gene:...	[more]
BX649434.3	1.928e-20	27.65	pep chromosome:GRCz11:3:18270043:18274691:-1 gene:...	[more]
si:dkeyp-88h4.2	2.170e-20	28.30	si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-1...	[more]
CU024870.2	3.053e-20	28.30	pep chromosome:GRCz11:25:23489979:23495448:1 gene:...	[more]
BX544877.2	3.093e-20	28.30	pep chromosome:GRCz11:25:25310063:25315481:1 gene:...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
slc7a1	7.838e-22	32.38	solute carrier family 7 (cationic amino acid trans...	[more]
ENSXETT00000024583.1	4.398e-19	28.97	pep primary_assembly:Xenopus_tropicalis_v9.1:2:942...	[more]
ENSXETT00000002428.1	5.342e-19	32.71	pep primary_assembly:Xenopus_tropicalis_v9.1:3:159...	[more]
sulf1	1.396e-18	28.09	sulfatase 1 [Source:Xenbase;Acc:XB-GENE-966419]	[more]
ENSXETT00000037748.1	1.491e-18	28.09	pep primary_assembly:Xenopus_tropicalis_v9.1:KV460...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q03278\|PO21_NASVI	1.208e-21	28.95	Retrovirus-related Pol polyprotein from type-1 ret...	[more]
sp\|P16423\|POLR_DROME	1.707e-16	26.11	Retrovirus-related Pol polyprotein from type-2 ret...	[more]
sp\|Q03274\|PO22_POPJA	6.052e-15	27.95	Retrovirus-related Pol polyprotein from type-1 ret...	[more]
sp\|P14381\|YTX2_XENLA	7.667e-15	27.16	Transposon TX1 uncharacterized 149 kDa protein OS=...	[more]
sp\|Q03279\|PO21_BRACO	1.732e-11	27.66	Retrovirus-related Pol polyprotein from type-1 ret...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4Y2VFZ4	1.041e-76	37.24	Retrovirus-related Pol polyprotein from type-2 ret...	[more]
A0A183CIN3	1.620e-76	36.84	Reverse transcriptase domain-containing protein OS...	[more]
A0A4Y2L367	2.445e-74	37.76	Retrovirus-related Pol polyprotein from type-1 ret...	[more]
Q7YXU7	2.201e-73	34.45	ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 S...	[more]
A0A4Y2WJK9	1.036e-72	36.13	Retrovirus-related Pol polyprotein from type-1 ret...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000034560.1	1.795e-25	29.56	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000048385.1	2.525e-21	30.43	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000034831.1	3.506e-21	29.66	pep primary_assembly:Astyanax_mexicanus-2.0:3:1621...	[more]
ENSAMXT00000046127.1	5.604e-21	32.20	pep primary_assembly:Astyanax_mexicanus-2.0:7:1638...	[more]
ENSAMXT00000048276.1	6.941e-20	33.84	pep primary_assembly:Astyanax_mexicanus-2.0:17:785...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000036683.1	4.056e-21	28.40	pep primary_assembly:ASM223467v1:19:23029986:23032...	[more]
ENSORLT00000028058.1	6.236e-21	28.40	pep primary_assembly:ASM223467v1:18:21516917:21520...	[more]
ENSORLT00000043343.1	6.009e-19	27.39	pep primary_assembly:ASM223467v1:20:916169:918192:...	[more]
ENSORLT00000026767.1	8.604e-19	23.00	pep primary_assembly:ASM223467v1:20:16240812:16243...	[more]
ENSORLT00000035976.1	9.538e-19	31.68	pep primary_assembly:ASM223467v1:16:7718738:772789...	[more]

BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000021486.1	1.043e-176	64.70	SMESG000021486.1	[more]
SMESG000021486.1	1.834e-176	62.81	SMESG000021486.1	[more]
SMESG000044750.1	7.914e-146	59.69	SMESG000044750.1	[more]
SMESG000078596.1	2.920e-112	56.36	SMESG000078596.1	[more]
SMESG000046455.1	4.788e-19	72.69	SMESG000046455.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence
protein sequence

transcript sequence

>SMED30016298 ID=SMED30016298|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=5769bp
CGAATATGTCAAGAATTATTTGCGTAATTGCTTTTTAATGCATTCAATTA
CGAACATTGAAAGCTGTCACTCATTAGGTCGAGATAACATTGAAACCTGG
GGTCCGGAGATGATCAATATGATCCAGAGTTCTTCATACTACTTTGCAAA
TTGTAAGGAGAGACTTTTAAAATTACGGCAATTAAATATATCTCGAGAAA
TTGATAAAATTCACAACATTATCTCGCCAAATACCATCTCGGAAATAAAC
AACTTTCTTGAAACTGTAGAAGTTGCTTTACCAAAGAAAGTAGACCAATT
AAAAACTCTCAGCAAATTAGGGAATAAAATCAACGAATTTAGTAATGAAT
CGAATTTCCCTGACATCGATAAAGCAAAGCGATTTCTTTACTTTATTATC
AGAGACAAGAAGAACTTCCTTGTCAACAATCGGTTTTATTTCCGTATTTC
ACAAAATTGCAGTAAGATATGTACCGCAAATATGAGCGCTTGTATAACTG
AAATCATTGACTATCTTTCACCATATATAACCTCGGTAAAGGATAATCAA
ACAGTGAATACCTCTGTCTCTGCTACTGTTGAAAATGTCAGTGAGTCTGT
TGATCCTCTTTTAGAAGTACCCTCTTCTCCTGTTACTGACACTGAAACTT
TTGAATCACCGCTAAAATTTGATAATGAAACTTTAAAGCGAAAATTGTCA
GTAGACATTGATGATAACCAATCAACTACAATAGTTACCAATGACATTCA
ACAGGATGTTCCACAGCCAAAAATAATTAAAAAGACTAGAAGAAATACAG
TGAAACCTAAATGAAGGTGCGTGCCTGTATCAGTCTCAATATCTGCCCCA
ATCTCAAAAGAGACTGATGCAGACAGCACAACAAATAAAATTTATAATAA
TTATAATAATCAAATAATTTCAATTCATGACCCAAAGATCTGGTTCACTG
ATGAAAATATTGATAAGTTTCTTGAAAATCACATCAGGAACTCAGACTTT
GTGTCTATTAAATGCTTTATTGTAGAAATTCTGTGTGCTAACCTCGAAAA
AGACATTTTTCCAATCCCGGAAAACGTCTTCAAAGCACAAGTAATATTAT
GCCCCCTTAATATAAATAATGCTCACTGGATCTTGTTCGTGTACTGTAAA
TCTTCTCTAATGTCTTACTTTGTCGATCCAATATTTAGCAACCGCCATAG
CTTTACAAATAAAACTATTGCCCTCAAAATCACCATGGCTTTAAATGAAT
TATTTGATCTTAAAGCAGCAATGACCTTTCACCCTCATGATGACTTTAAA
TATCAAAATAACAACTATGATTGTGGCCCTTTCATCTGTGCATATGCCAT
GATGATTAGTGGCGAATGGCAAAGTTTTCCTGAAAGCTTTGTCGAGATAA
TCCGAAAAGAGGTCCATCAATTCAAACTTTTCCCACAACAAAAAGATCCC
AAAATATCGGGTGGTGGCCTACCAAAATTCATGGAGATCATCAAGCGTAA
TGGAATTAAGAAAATCAGCAGTGCTAGTCAAGCATTTCTCATGAAACAGA
ACTCATGTGTTTCTTCCTTGTTAATTGAATGGTTTAAAAATAAGAACAAT
ACAACTGTTCTTTCTCCTGAACTGACATCGAAAGTGATTGCACAGAACAA
TAGATATATTAGAGAAAATGTAACATTCAAACAATTTTCTGGAATAGAAC
ACGTCATCAGCGTCATTCCAAATGACATGAATTGGGGTCTTTATCTCTTC
TCTCTTGTTTCAGGAATCAGTTACATATTCAATTTTAGAAACAGAACTTT
AACTGAGAGACTAATTGGTATTGGAGAAAACATGACTGACTACTTGAACA
AATTTTTCATTTCGGACAAAAAAGTCACTTTCAATCGTGACCACAACATC
GATCACATTTCCATCACACTTGATGATCCACATCTATTTGCTTCTGCTTT
TATTGAACTTGTTGAAATGGTGATTTTTGAAAACCAGATTTCTCGTACAA
GTATCAGTGAGTCCCTAAATTCTTTTAAAATTCAGCAAGCAAATGAGATC
TGCAAGAATTTAAATTTATTAAATTTCAAAATTACCGAGGAAATAACATC
AAAATACTTTAAAATTTTAAAACTCGATGATAATTTCATGCTTTTAAATG
CGACAATGTGCTCAGCAATCCTTGATGACTGCACTCAATACTTGAATGAA
TACTTAAACTACGAGTGCGTCATTAAGGCACAAGTAATTTTTGCAATTGT
TGCACCTCCAAAATATCGAGAATTTCTTTTAATTATTGATTATAATACTG
ATGAGTACTATATTCTTAATCCAACGACTCTGTCTGAAACTGAAAATCAC
CTGTTCATCTGCAAGAGCCTTAGGAACAAATTAAATGAAATAAAGGAAAC
ACCTGGTCGCGTATTAAATATTGGTGTTTTCCCGCACGATATCCGAGGAT
CCGGTCTTGTGAGTAAAGTCCTCATCTGCGCTTTCATCAAACATTACGTA
AATGACTTACCCCTTGTAAATTTAAACTTGCGCGAGATAGGTAACACAAT
CAGCTCATTGCTTCCTGTCATAAACGAATATAAAAAAGAACAAAATTCTT
GTAAAACTAAATTCAATAAAATCAATAAGGGTAATTTAAACTTAGAAATG
CGAAAAATAAAAATTGCGATACTAATCAAGAAAGTATTGAACTTTAACGT
TAATCAAATCATTGACGTCATCAATGAACAGTTCCCAAACAGAATAAAAA
CCACACACAAGCCGTATTTGGGTAACAAAAAAAACACTGCGCATAAAATC
AATAAAGGCATATTAATTGCCAATTTCATGACTGACATGAAATCAACAGT
CAACAAAATTCTCAATAACATAGATGTTAGCATCCGTCCAACATTCCAGA
AAATTGTTTCAAATTTCCTAATAAAATCTCCTTTTCGTGGAAATTGGAAT
GCAATTTTCAATTTCAGCAAACGTTCCAGCGTAATACTTAATCTTGAACC
TTTCACAAATGATGAAGTGATGCTTGAACTCAAGAAAGCTGACAATACAA
GTCCGGGGATTGATGGAATACAATATCGTGATTTGTTGCTTCTTGATCCC
GAGGGTAAATTACTAACCTTATTGTATAATAAAATCATTTCTGATAAGAC
CATACCAGACAGTTGGAAGACTTTCAAAACACTTCTAACTCCTAAACCTG
ATAAAGAAGATAAATATGATGATGTATCATCTTGGCGTCCAATTGCCTTG
CTTTCTGTCATCTATAAAGTTTTCGCTTCTTGTTTAGCAAGTCGTTTGAC
AAGATGGATAGACTTGAATGAACTTTTACACATTGGCCAGAAAGGCGGCT
CTAAACACGATGGATGTGTTGAGCATAATTCGATTCTTTCTGCTGCATTA
GAACACTCCAGATACAGCACCAACAAACCCCTTGCTATTGCTTGGCTTGA
TATAAAAGATGCCTTTGGCAGTGTTCCCCACGAATACATGTGGTCTTTAC
TCCGATTTATTGGAGTGAGTGAGGGATTTGCATATGTTATCCAGATGTTA
TACTCCAATACGAGCACTTTCTATAGTTGTGGCCACATTCAAACTCCAAA
CATTCCTATCGTACAAGGAGTCAAACAAGGATGCCCTATTTCCATGATCT
TGTTTTCTTTGGCTATCAATCCAGTACTTGAAGCGGTATCACGATCTGAT
TGTAGACCGTTTATGATTGGAAAATCTCCAGTCAAGATTCTCGCATACGC
TGATGACATCGCTCTTGTTGCTTGCTCTGTTAGTGAACTTCAAAAGATTA
CTGACATAGCTGTTGCAACTGCAGCTGAGATAGGGTTTGAATATCGCCCT
GAAAAGTGTGGATATCTTCAACTGCCAAATGTTGACATGGACACTGTAAT
TTCAATCAACGACATTCGAATTAAAAGGCTAGAATCTAATGAATTCTATC
GATATCTTGGAGTGCCTGTAGGCATGGACACTGATCAAAATCCATATGAA
ATTCTCCAAAGGTAGTTTCTGACACGAAAATACTTGCTGATTCTGACCTA
CTTGGCTGGCAAAAACTAAAGGCTTATAAGATCTTTGTTCATTCACGTTT
GATCTTTCCTTTTAGAACTCGAGAGATTAAGACTTACGCTCTTTCTAAAC
CAAATGGAAATAGTAATATTTCTGTCAATATAACCAGCCAACTTAGAAAT
AGCTTTAGAAAAATGCTACTTCTGCCAAAGCATTCTGAAGTCTGCTATTT
CTATAGTTCTACTGAGAATGGCGGAGCAAATTGTGTAGATCTTCTTGACG
AATATCACACTCAGACGATAACACACTGTTTTCGATTACTAACATCAAAG
TGTGACTTTGCTAGAAAGATCAACACTGATTCATTGAAATTTGTTACTGG
ACCTCGTCTTGGGATAAAAGAACCCACTCTTCAAGAAGGTCTTGATTGGC
TTAATGGAAAAGATTCTATACCACTGCATTCTGGAAAGAAAACTCGATTT
CAAAGAGTCAGAATTGCAATATCGTTCTTTGCAAGAACTCATCAAATTGA
CATATCATTCGCTATCACAAACCATGAAACATCCCTCTACATAACCACAG
CAATGCATGGAACTGTGATTTTGACTTCTGATCTACGTCAGACTACTTCA
AAAGTCTTACATATGGCACTTTGTGATTCATATCTTGTTAAATGGGAAAG
CGGTTGCACTTCTAACATCATAGCTTCAGCAATCAGACTTTCGCCCATGA
TAAATAAAGCAATATTTCGCGGTGATTTATCTGAATTCGCTTGGAACTTT
ATTCATCGAGCTCGCACAAACACTCTCTCAATCAATGCGAAGCCTTATAA
TAAAGGTGAAAAGAGACTTTGTCGTCGGTGTAACAGTGAAGAGGAGACAA
TGTCACACGTACTTCAATCGTGTAAGGTCCACCTAGTTCTTGCATCCGAG
CGACACGACAACTGTCTCAAATTAATAACAAATCGCCTAATGAATAAACC
TAACCTAATCGTTGTAGTAGATCACACCTGCGCACTTGTTCCGAATTCCA
AAGAACGAGTTGACTTGATAATCACTGATGTGTCGAAAAAGAGAATCTTT
CTTGTTGACATGAAATGTCCGAGCGACTCTGTCACTACTTTTGAACGAAT
AGACAAGGCCAACTTGGAAAAATATGAAAATTTAAGGAAAGAAATACAGA
CTGCCAAACCTGACTTCAAAGTCGACCTTGACACATGTATTATTGGAGCC
TTAGGATCTTTTCCTGCAAAAACCTCTGAACTCCTTTTGAAAATAGGAAT
TGGTCGCTCAGAACTGAAAGGTCTACTAAAAGAATGTGCGATAAGTAACA
TCACACAATCTGCACGAAGGTGGTACTACCACAAGACAGGCACTCTGTCA
GAACCTGATCAAATAAATTTCAAATAAATATAAATAAAATGCAATAAAAT
AATTCCTGTTAGCATTAGCATTGTCAAACTATTTGTGTATATTTATGTAT
TTTCTATGTATATATCTAGAATTTTAGATGTTCCTCTTTCCCAATAAATG
TTTTATATATGTATATATATTGTTTTGCTAACAGGCTTTTGCACTTTGCA
AAAGTTTATTTTAGAATCTGTATGCTGGTTATTCATTCCTCAATTCACCG
CCATCAATGAAGAGCCAACATACAATGCCGGAGTTTGATTTCCGATGACA
ATATCAGAAAAGCCGAGGACAATTCAGAAGATTGATAAATAACTTGAGTC
GAAATGATCCCAAACAATT

protein sequence of SMED30016298-orf-1

>SMED30016298-orf-1 ID=SMED30016298-orf-1|Name=SMED30016298-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=405bp
MLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFA
RKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVR
IAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLH
MALCDSYLVKWESGCTSNIIASAIRLSPMINKAIFRGDLSEFAWNFIHRA
RTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDN
CLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDM
KCPSDSVTTFERIDKANLEKYENLRKEIQTAKPDFKVDLDTCIIGALGSF
PAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ
INFK*

protein sequence of SMED30016298-orf-2

>SMED30016298-orf-2 ID=SMED30016298-orf-2|Name=SMED30016298-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=952bp
MSYFVDPIFSNRHSFTNKTIALKITMALNELFDLKAAMTFHPHDDFKYQN
NNYDCGPFICAYAMMISGEWQSFPESFVEIIRKEVHQFKLFPQQKDPKIS
GGGLPKFMEIIKRNGIKKISSASQAFLMKQNSCVSSLLIEWFKNKNNTTV
LSPELTSKVIAQNNRYIRENVTFKQFSGIEHVISVIPNDMNWGLYLFSLV
SGISYIFNFRNRTLTERLIGIGENMTDYLNKFFISDKKVTFNRDHNIDHI
SITLDDPHLFASAFIELVEMVIFENQISRTSISESLNSFKIQQANEICKN
LNLLNFKITEEITSKYFKILKLDDNFMLLNATMCSAILDDCTQYLNEYLN
YECVIKAQVIFAIVAPPKYREFLLIIDYNTDEYYILNPTTLSETENHLFI
CKSLRNKLNEIKETPGRVLNIGVFPHDIRGSGLVSKVLICAFIKHYVNDL
PLVNLNLREIGNTISSLLPVINEYKKEQNSCKTKFNKINKGNLNLEMRKI
KIAILIKKVLNFNVNQIIDVINEQFPNRIKTTHKPYLGNKKNTAHKINKG
ILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIF
NFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDLLLLDPEGK
LLTLLYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSV
IYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHS
RYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSN
TSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRP
FMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC
GYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQ
R*

protein sequence of SMED30016298-orf-3

>SMED30016298-orf-3 ID=SMED30016298-orf-3|Name=SMED30016298-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=271bp
EYVKNYLRNCFLMHSITNIESCHSLGRDNIETWGPEMINMIQSSSYYFAN
CKERLLKLRQLNISREIDKIHNIISPNTISEINNFLETVEVALPKKVDQL
KTLSKLGNKINEFSNESNFPDIDKAKRFLYFIIRDKKNFLVNNRFYFRIS
QNCSKICTANMSACITEIIDYLSPYITSVKDNQTVNTSVSATVENVSESV
DPLLEVPSSPVTDTETFESPLKFDNETLKRKLSVDIDDNQSTTIVTNDIQ
QDVPQPKIIKKTRRNTVKPK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008234	cysteine-type peptidase activity

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom
IPR003653	Peptidase_C48_C

Vocabulary: **biological process**
Term	Definition
GO:0006508	proteolysis

Main menu

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Owlery

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