TNF receptor-associated factor
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016277 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.003 bits (149), Expect = 1.896e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 230 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 446
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.003 bits (149), Expect = 2.212e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 288 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 504
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.003 bits (149), Expect = 2.212e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 288 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 504
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.003 bits (149), Expect = 2.393e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 313 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 529
BLAST of TNF receptor-associated factor vs. Ensembl Human
Match: TRAF3 (TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]) HSP 1 Score: 62.003 bits (149), Expect = 2.393e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 313 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 529
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf3 (TNF receptor-associated factor 3 [Source:ZFIN;Acc:ZDB-GENE-040801-257]) HSP 1 Score: 63.1586 bits (152), Expect = 6.911e-10 Identity = 38/148 (25.68%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 1342 NENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFI------YSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 +++ + D ++ ++ +K+ +ET N G WKI + +++++ + YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G + + PS + + +P + N Sbjct: 393 HDDLMSVHDVRLAEMDLKLQVLETASFN----GTLIWKIRDYKRRKQEAVVSKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLQWPFKQKVTL--MLMDQGPARKHLGDAFKPDPSSSSFRRPTGEMN 534
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: BX901915.1 (pep chromosome:GRCz11:CHR_ALT_CTG5_1_18:28764891:28768979:-1 gene:ENSDARG00000109857.1 transcript:ENSDART00000191629.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX901915.1) HSP 1 Score: 52.7582 bits (125), Expect = 4.566e-7 Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLINAEIC-GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 + DL I ME + + ++A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 104 LRDLSIVEMEAKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 238
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: AL844899.1 (pep chromosome:GRCz11:CHR_ALT_CTG5_2_4:28756846:28760787:-1 gene:ENSDARG00000111038.1 transcript:ENSDART00000183806.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL844899.1) HSP 1 Score: 52.7582 bits (125), Expect = 4.566e-7 Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLINAEIC-GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 + DL I ME + + ++A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 104 LRDLSIVEMEAKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 238
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf2a (Tnf receptor-associated factor 2a [Source:ZFIN;Acc:ZDB-GENE-071120-2]) HSP 1 Score: 51.9878 bits (123), Expect = 1.937e-6 Identity = 52/216 (24.07%), Postives = 101/216 (46.76%), Query Frame = 1 Query: 1174 LRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLK-------IKMMEMETKL---INAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 L E K+ ++ R +++EL F+ + N E++ + ++ ++++ +++ +I++ K+ L+ + ++EME K+ A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 332 LHSEKTKVVELSRRCQELELKVNTFENIVCVLNREMERSATTMEAYNRQHR----LDQDKIEILNNKVRQLERTVGLRDLSIVEMEAKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 538
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Match: traf5 (Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]) HSP 1 Score: 50.447 bits (119), Expect = 2.758e-6 Identity = 54/239 (22.59%), Postives = 101/239 (42.26%), Query Frame = 1 Query: 1159 ELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLL-KQEKDKFIYSNPFFSGPSGYKMCLSVI----QSSRG-QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN--EGIQIYNIPCD------AFVNGNDQLLIKCRVE 1833 EL L R ++ + + E L++H L+Q +LL +IH + C N+ +++ +E ++ GK WK+ + ++E + S+PF++ SGYK+ + S RG + + ++RG+++ L WPF+ +T+ + + S T D SD+ + +P D N G + CD A ++ L IK +V+ Sbjct: 44 ELKEELPRLQASLDSLRQQVAVTESLREHLGALEQTCERHTRLL-----DIHVEQLQC---------------NEQRLRQLE------SSSYDGKLIWKVRDYWHRKESGAALSSSPFYTSRSGYKLSVRAYLGGDGSGRGSHMSLYITIMRGDFDSFLPWPFRQNITLTLLDQSGTRNHMSHTF-IPDVNSDS-FHRPTSDANVATGFTRFISHCDLENPRNAVFVRDETLFIKVKVD 254
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: hspb6 (heat shock protein family B (small) member 6 [Source:Xenbase;Acc:XB-GENE-876273]) HSP 1 Score: 59.6918 bits (143), Expect = 7.622e-9 Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLI-NAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN--EGIQIY------NIPCDAFVNGNDQLLIKCRVE 1833 M D+ + +EM + + G F WKI +L + D +YS F++ GYK+CL + + G + + F +++GEY+ L WPFK+ VT + N R S + RP + A + +P++D N G ++ N P A++ N L I+C ++ Sbjct: 208 MKDIVLNELEMRSACLEQTSYDGVFLWKISDLTNKSHDAVTGRAISLYSPAFYTAKYGYKVCLRIYLNGDGAGKGTHVSLFFTVMKGEYDALLPWPFKHKVTFVLVDHNN----RDSVFD-AFRPDVTSASFQRPINDMNVASGCPLFCPIAKLNSPKHAYIREN-TLYIRCIID 376
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 59.3066 bits (142), Expect = 1.419e-8 Identity = 38/142 (26.76%), Postives = 68/142 (47.89%), Query Frame = 1 Query: 1360 IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK V++ + G R + P+ + + KP + N Sbjct: 362 VHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSL--MLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMN 497
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: ssh2 (slingshot protein phosphatase 2 [Source:Xenbase;Acc:XB-GENE-993093]) HSP 1 Score: 59.3066 bits (142), Expect = 1.518e-8 Identity = 38/142 (26.76%), Postives = 68/142 (47.89%), Query Frame = 1 Query: 1360 IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK V++ + G R + P+ + + KP + N Sbjct: 387 VHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVSL--MLMDQGPSRRHLGDAFKPDPNSSSFKKPTGEMN 522
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Match: egf (epidermal growth factor [Source:Xenbase;Acc:XB-GENE-951823]) HSP 1 Score: 54.299 bits (129), Expect = 4.794e-7 Identity = 49/199 (24.62%), Postives = 83/199 (41.71%), Query Frame = 1 Query: 1309 IHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIEN---LLK---QEKDKFIYSNPFFSGPSGYKMCLSV------IQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEG-------IQIYNIPCDAFVNGNDQLLIKCRVEEEHNL 1848 I K C NE + + L ++ EME++ + G F W+I N LLK +E+ I+S F++G GYK+CL + Q I + H ++GEY+ L WP + + + + G + +P + +P RN + + + +V ND LL++C V +L Sbjct: 353 IAKMETQCTYVNE-----LKHTIRSLDNRLGEMESQQCS----GIFIWRINNFNSLLKNQEEERPVVIHSQGFYTGKPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYDSLLPWPLQGTIRLSILDQSEGVAMQDQEEVMDTKPELLAFQRPTVARNPKGFGYVTFMHLQALKQRQYVK-NDTLLVRCSVTTHLDL 541
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.7734 bits (151), Expect = 1.054e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 287 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 503
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.7734 bits (151), Expect = 1.054e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 287 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 503
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf3 (TNF receptor-associated factor 3 [Source:MGI Symbol;Acc:MGI:108041]) HSP 1 Score: 62.7734 bits (151), Expect = 1.055e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 312 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 528
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Match: Traf6 (TNF receptor-associated factor 6 [Source:MGI Symbol;Acc:MGI:108072]) HSP 1 Score: 55.0694 bits (131), Expect = 2.039e-7 Identity = 55/205 (26.83%), Postives = 91/205 (44.39%), Query Frame = 1 Query: 1276 EVKLLRSG--IDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIEN----LLKQEKDK--FIYSNPFFSGPSGYKMC------LSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN-EGI-QIYNIPCDAFVNG----NDQLLIKCRV 1830 E +L+R I E+ K E +M + I L+ K+ EME + N G + WKI N L QE+++ I+S F++G GYK+C L Q I + H ++GEY+ L WPF+ + + + I ++ +P + +P RN +G + + +A G +D LL++C V Sbjct: 311 ESRLVRQDHQIRELTAKMETQSMYVGELKRTI----RTLEDKVAEMEAQQCN----GIYIWKIGNFGMHLKSQEEERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEALIRQNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTFIKDDTLLVRCEV 507
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q60803|TRAF3_MOUSE (TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 7.380e-9 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 312 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 528
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q13114|TRAF3_HUMAN (TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 1.149e-8 Identity = 57/234 (24.36%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSK------IIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 + KIL ++R + + EL++ +R Q W E+ + +K + LQ + V L S + N + S+ + D ++ D+ ++ +ET N G WKI + +++++ +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G+ R + P+ + + KP + N Sbjct: 313 ESKILHLQRVIDSQAEKLKELDKEIR----PFRQNW---EEADSMKSSVESLQ----NRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYN----GVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTL--MLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN 529
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q6DJN2|TRF6B_XENLA (TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 7.499e-7 Identity = 44/174 (25.29%), Postives = 75/174 (43.10%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKL--INAEIC-GKFEWKIENLL------KQEKDKFIYSNPFFSGPSGYKMCLSV------IQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEG-------IQIYNIPCDAFVNGNDQLLIKCRV 1830 +N+LK + +E KL ++ C G F WKI+ ++EK I+S F++G GYK+CL + Q I + H ++GEY+ L WP + + + G I + +P + +P RN + + + +V ND L ++C V Sbjct: 361 VNELKHTIRSLEDKLLDVDGHHCNGVFIWKIKGFSGLQKTQEEEKPVVIHSPGFYTGKPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYDSLLPWPLHGTIRLSILDQSEGAIIQDQEEVMDTKPDLLAFQRPTTQRNPKGFGYVTFMHLNTLKQRQYVK-NDTLFVRCAV 533
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|Q3ZCC3|TRAF6_BOVIN (TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 8.397e-7 Identity = 46/174 (26.44%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 1375 MNDLK--IKMMEMETKLINAEIC-GKFEWKIEN----LLKQEKDK--FIYSNPFFSGPSGYKMC----LSVIQSSRGQIFVSF--HLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEG-------IQIYNIPCDAFVNGNDQLLIKCRV 1830 +N+LK I+ +E + I A+ C G + WKI N L QE++K I+S F++G GYK+C L + + R ++S H ++GEY+ L WPF+ + + + + ++ +P + +P RN + + + F+ +D LL++C V Sbjct: 347 VNELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPSAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAAVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIK-DDTLLVRCEV 519
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Match: sp|B5DF45|TRAF6_RAT (TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 9.833e-7 Identity = 52/195 (26.67%), Postives = 86/195 (44.10%), Query Frame = 1 Query: 1300 IDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIEN----LLKQEKDK--FIYSNPFFSGPSGYKMC------LSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN-EGI-QIYNIPCDAFVNG----NDQLLIKCRV 1830 I E+ K E +M + I L+ K+ EME + N G + WKI N L QE+++ I+S F++G GYK+C L Q I + H ++GEY+ L WPF+ + + + I ++ +P + +P RN +G + + +A G +D LL++C V Sbjct: 321 IRELTAKMETQSMHVSELKRTI----RSLEDKVAEMEAQQCN----GIYIWKIGNFGMHLKSQEEERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAVIRQNHEEVMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQGTFIKDDTLLVRCEV 507
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.698e-30 Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 3 Query: 96 CNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKINV-NHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKF 581 C++C L++ AC + CGC FCS CI +Y+ + +CPG + C+ + + ++I DY V+ +I + VKCP+E C+ EL IE H++ C M+ +CPF V+GC + +++I ++ HL N ++HS L+ID I+N + L + +EL+ + N K F Sbjct: 27 CDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSECKEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSKLIIDIISNMRNDFFGLTTKEVELREDINLIKNHF 189
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.185e-18 Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = 3 Query: 96 CNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKINV-NHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMEN 560 C +CN+LM AC + CGC +C CI YL +CPG C+ +N+ + + +S RI+ +VKCP C + +EL ++ H+ C + CP IGCE+ ++ EM HL++ RH+ L++ +F E++S N N E E+ Sbjct: 31 CILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTECKEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQLIM----SFCNELKSEINHNNETTKED 182
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A0F7GWW3 (TNF receptor associated factor 4 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.517e-14 Identity = 43/135 (31.85%), Postives = 81/135 (60.00%), Query Frame = 3 Query: 249 HISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLK--------------NENIELKMENNQFKQKFANIELQWANQ 611 +I +DYP++++I + VKC +++C + ELR +E+H + C R ++CP++ IGC+K I ++ HL ++ + H+ LL+D + NF E+E LK NE ELK++ ++ + + +++ + ANQ Sbjct: 15 NICVDYPMNMKIAKLQVKCKEKSCDYVDELRKMEDHSRTCKYRSVACPYSNIGCDKCNISQDKVTDHLQSEIFVHTKLLMDFVVNFNNEMEMLKANNNGLSPVNELLRNEINELKLDGDRRRVEIGDLQRKCANQ 149
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A0L8HQP6 (MATH domain-containing protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22008610mg PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.698e-10 Identity = 58/203 (28.57%), Postives = 100/203 (49.26%), Query Frame = 1 Query: 1216 NEQIELLKQHFKQLQQEHNDEVKLLRS--GIDEIHKKNENCAMANENFSKI--IDGKMNDLKIKMMEMETKLI-------NAEICGKFE----WKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDR----PSDARWGKPVDDRN 1752 E++ +L Q ++L++ + +V++L+S I ++ + ++ +++ ID ++ +++ EM +KL +AE+ K WK + LK K FIYS PF+S GYKMC V + G + F +++GEY++ LTWPFK+ VT+ + G YSDR P+ + KP D N Sbjct: 179 TEKLIVLDQDLQRLKEGTDKQVQILKSKESITDMTTIQNLSTLIDQLLTQVTSIDRQIGLHDMRIEEMNSKLTSVTHPNYDAEVLMKISNYSRWK--SALKTSKTSFIYSEPFYSSKYGYKMCAKVYLNGDGIGKGTHLSFYFTIMKGEYDNILTWPFKHKVTLTVLDQFGGE------KNYSDRFLPDPNSKSFHKPSSDYN 373
BLAST of TNF receptor-associated factor vs. TrEMBL
Match: A0A2B4SA99 (TNF receptor-associated factor 6-B OS=Stylophora pistillata OX=50429 GN=traf6-b PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.522e-9 Identity = 45/175 (25.71%), Postives = 83/175 (47.43%), Query Frame = 1 Query: 1261 QEHNDEVKLLRS----GIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSV----IQSSRG-QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPV 1740 EH++E+ LLR +D +HK +++K+++ +L N G++ WKIEN+ + +D +YS F++ P GYKMCL + ++S G + + H++RG+++ L WPF G T+ + G++ T +P + + +PV Sbjct: 299 HEHSNEIDLLRHQLKETLDRVHKLK--------------------VEVKLLQQGQQLCN----GQYIWKIENMDRCCQDAVSGVSPVMYSPGFYTSPCGYKMCLRINLNGVKSGVGTHVALHVHMMRGDHDKHLEWPFSKGFTLSIVDQSEGSLQYHITKTVVTKPEPSVFQRPV 449
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: ENSAMXT00000035169.1 (pep primary_assembly:Astyanax_mexicanus-2.0:9:3354744:3362219:1 gene:ENSAMXG00000029095.1 transcript:ENSAMXT00000035169.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 51.2174 bits (121), Expect = 3.923e-7 Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 1 Query: 1438 GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTI 1647 G WKI + +++ + +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ Sbjct: 4 GTLIWKIRDYKRRKAEAVASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTL 84
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:103028261]) HSP 1 Score: 52.373 bits (124), Expect = 1.102e-6 Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLINAEIC---GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTI 1647 M DL++ E E L + C G F WKI + ++ +D ++S F+S GYKMCL + + G + + F ++RG+Y+ L WPF VT+ Sbjct: 360 MRDLQLA--ESEQALRELQFCTYDGVFVWKISDFSRRRQDALAGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMRGKYDALLKWPFSQKVTL 462
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 51.6026 bits (122), Expect = 2.454e-6 Identity = 52/216 (24.07%), Postives = 101/216 (46.76%), Query Frame = 1 Query: 1174 LRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLK-------IKMMEMETKL---INAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 L E K+ ++ R +++EL F+ + N E++ + ++ ++++ +++ +I++ K+ L+ + ++EME K+ A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 329 LHSEKTKVAELSRRCQELELKVGTFENIVCVLNREMERSATTMEAYNRQHR----LDQDKIEILNNKVRQLERTVGLRDLSIVEMEGKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 535
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf5 (TNF receptor-associated factor 5 [Source:NCBI gene;Acc:103031120]) HSP 1 Score: 50.8322 bits (120), Expect = 4.210e-6 Identity = 52/248 (20.97%), Postives = 111/248 (44.76%), Query Frame = 1 Query: 1141 SMRETDELNRLLRRETEKINQIWPRN---EQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENL-LKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQI--------YNIPCDAFVNGNDQLLIKCRVE 1833 S+ E EL ++RE + + + + E++ L+ L+ ++V + +S + + + C ++ ++++D + L+ + +L + GK WK+ + K+E + S PF++ SGYK+ V G + + L+RG+++ L WPF+ VT+ A+ ++GN S + ++ + + +P + N + P +A +D L IK +V+ Sbjct: 307 SVEEQRELVSSVKRELKDLRDVLEADLTKEELVSLRASLDSLR----EQVAMTQSLREHLGALGQTC----QSHTRLLDIHVQQLQCSEQRFQ-QLESTSYDGKLIWKVHDYHRKKEAGTALNSPPFYTSHSGYKLSARVYLGGEGTARGTHLSLYVMLMRGDFDSLLPWPFRQNVTL-AVLDQSGNRNHVS-LSFTPDLASNNFRRPTSETNAALGFPRFITHADLEAPRNAAYVRDDTLFIKVKVD 543
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Match: traf2a (TNF receptor-associated factor 2-like [Source:NCBI gene;Acc:103036375]) HSP 1 Score: 50.447 bits (119), Expect = 4.635e-6 Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLINAEIC-GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 + DL I ME + + ++A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 288 LRDLSIVEMEGKMREMSAATYDGVFVWKISDFSKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 422
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002130.1 (pep scaffold:Pmarinus_7.0:GL484662:8457:12718:-1 gene:ENSPMAG00000001936.1 transcript:ENSPMAT00000002130.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 69.707 bits (169), Expect = 7.441e-13 Identity = 50/209 (23.92%), Postives = 91/209 (43.54%), Query Frame = 1 Query: 1225 IELLKQHFKQLQQEH----------------------NDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 +E+L QH +QLQ H + ++ L + + E C M + + + DG ++ + ++ +ET A GK WKI + +++++ +YS PF++ P GYKMC + G + + F ++RGEY+ L WPF+ VT+ + G R + ++ P+ + +P D N Sbjct: 180 LEMLTQHNEQLQSLHVAQRAPQRDADTAALRRDMATLRERLRALEAALGNPGPCEERCHMHEQRLT-MHDGLLDTAERRLQVLET----AGYSGKLVWKIRDYARRKQEAASGRTLSLYSQPFYTSPFGYKMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLEWPFRRRVTLSLLD--QGAARRHLSDTFTPDPASGSFRRPDGDMN 381
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000074.1 (pep scaffold:Pmarinus_7.0:GL482142:165593:173010:-1 gene:ENSPMAG00000000066.1 transcript:ENSPMAT00000000074.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.1662 bits (165), Expect = 2.819e-12 Identity = 37/140 (26.43%), Postives = 68/140 (48.57%), Query Frame = 1 Query: 1366 DGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 D ++ ++ ++ +ET N GK WKI + ++++D +YS PF++ P GY+MC + G + + F ++RGEY+ L WPF+ VT+ + G R + + P+ + + +P D N Sbjct: 305 DTRLAEMDLRFQVLETASYN----GKLVWKIRDYARRKQDAVSGRTLSLYSQPFYTSPFGYRMCARAYLNGDGVGRGTHLSLFFVVMRGEYDALLPWPFRQRVTLTLLD--QGAARRQLSDTFKPDPASSSFRRPTSDMN 438
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO43806 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXN6]) HSP 1 Score: 53.1434 bits (126), Expect = 1.713e-8 Identity = 30/105 (28.57%), Postives = 55/105 (52.38%), Query Frame = 3 Query: 96 CNICNELMIKACSAPCGCSFCSDCIEQYLD---GADKFCPGTSRYCEMTKINVNHISIDYPVSIR--ITETLVKCPKEN--CQFQAELRMIENHMKACNMRPISC 389 C IC E++ +A PCG SFC C+E +++ G ++ CP + C + I + +++R + +V CP + C+ +L +E H+K+C+ P+ C Sbjct: 18 CGICAEVLERAVLTPCGHSFCGVCLETWMNAKLGENEKCPASCPSCRADLYQGDTIPV---LALRGIVDGLIVHCPNADNGCKLVLKLEGVEGHLKSCSHAPVQC 119
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO49464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RG36]) HSP 1 Score: 55.8398 bits (133), Expect = 4.325e-8 Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 1 Query: 1378 NDLKIKMMEMETKLINAEICGKFEWKIENLLK--QE----KDKFIYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRN----GNIYRSSTIKYSDRPSDARWGKPVDDRN--EGIQIY----NIPCDAFVNGNDQLLIKCRVE 1833 +DLK++M+E + G + WKI+ + QE K IYS PF+ G GYK C V + G + + F L+RGE++ L WPF+ VT + G+ +R P+ + + +P + N G ++ N+ A+V +D + IK V+ Sbjct: 364 HDLKLQMLEATSYD------GTYIWKIDEYTRRYQEGVSGKTPSIYSPPFYVGRYGYKACARVYPNGDGMGKGSHLSLFFVLMRGEFDALLPWPFRQKVTFKLLDQDRVHDIGDTFRPD-------PTSSSFKRPTSNMNIASGCPLFISHTNLQTRAYVR-DDTMFIKIAVD 522
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO35237 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SM27]) HSP 1 Score: 55.0694 bits (131), Expect = 6.663e-8 Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 1 Query: 1438 GKFEWKIENLLKQEKDK------FIYSNPFFSGPSGYKMCLSVIQSSRGQ-------IFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNG 1671 G F WKI+ ++ + IYS+PF++ GYK+C + + G IF++ L+RGEY+ L WPF+ +TI I NG Sbjct: 380 GTFLWKIDKFTERYAEAKSGNATSIYSSPFYTHRFGYKLCARLFPNGDGSARDNYLSIFIA--LMRGEYDSILPWPFQETITITLIDQDNG 468
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO48773 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RI91]) HSP 1 Score: 54.6842 bits (130), Expect = 8.644e-8 Identity = 52/197 (26.40%), Postives = 88/197 (44.67%), Query Frame = 1 Query: 1276 EVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAE--IC-GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSV----IQSSRGQ-IFVSFHLIRGEYNDKLTWPFKYGVTI------DAITTR---NGNIYRSSTIKYSDRPSDARWGK--------PVDDRNEGIQIYN 1773 EV +L S DE + E+ D ++ +L K+M +ET+ I E +C G F WK++N + + I+S PF++ GYKMCL + + G+ + + H+++G+++ L WPF +T+ D I +R + + + RP+ R K P+D EG I N Sbjct: 275 EVDMLGSRGDEYRQFLAYLERKVEDVKTSSDRRIAELTHKLMRLETREIELEGRVCNGTFIWKLDNFRQCREGSIAGLTAAIHSPPFYTSMYGYKMCLRMNLNGVDGGLGEHVSLFIHMMQGDWDGILEWPFIGRITLSILDQSDQIDSRRPISETLVAKPNLLAFQRPTSPRNHKGYGYVEFCPIDQLTEGQYIKN 471
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Match: EDO38873 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBN4]) HSP 1 Score: 52.373 bits (124), Expect = 4.337e-7 Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1 Query: 1450 WKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTI 1647 WKI N+ + + YS FF+GP GYKMC + + G + + F ++RGE++ L WPF+ VT+ Sbjct: 337 WKITNVANKRSEATSGRVTSFYSPCFFTGPHGYKMCARIYLNGDGMGRNHHVSLFFVIMRGEFDALLRWPFRQKVTL 413
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: traf3 (TNF receptor associated factor 3 [Source:NCBI gene;Acc:101161601]) HSP 1 Score: 61.6178 bits (148), Expect = 1.340e-9 Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 1 Query: 1372 KMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRN 1752 ++ D+ ++ +ET N G WKI + ++++D +YS PF++G GYKMC V + G + + F ++RGEY+ L WPFK VT+ + G + + PS + + +PV + N Sbjct: 280 RLADMDLRFQVLETASYN----GTLIWKIRDYKRRKQDAVAGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTL--MLMDQGPSRKHLGDAFKPDPSSSSFRRPVAEMN 411
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Match: ENSORLT00000020861.2 (TNF receptor-associated factor 2 [Source:NCBI gene;Acc:101167626]) HSP 1 Score: 51.6026 bits (122), Expect = 2.540e-6 Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 1375 MNDLKIKMMEMETKLINAEIC-GKFEWKIENLLKQEKDKF------IYSNPFFSGPSGYKMCLSVIQSSRG-----QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRP--SDARWGKPVDDRN 1752 + DL I ME + K ++A G F WKI + K+ +D ++S F++ GYKMCL + + G + + F ++RG + L WPF VT+ + N R I + RP S + + +PV D N Sbjct: 398 LRDLSIVEMEGKMKDMSAATYDGIFIWKISDFTKKRQDAMAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGHSDALLKWPFNQKVTLMLLDQNN----REHIID-AFRPDISSSSFQRPVSDMN 532
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000015087.1 (SMESG000015087.1) HSP 1 Score: 515.383 bits (1326), Expect = 1.397e-178 Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL 1848 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITT+NGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL Sbjct: 190 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTKNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL 438 HSP 2 Score: 347.051 bits (889), Expect = 5.885e-113 Identity = 165/173 (95.38%), Postives = 167/173 (96.53%), Query Frame = 3 Query: 96 CNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKINVNHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 614 C ICNEL+I ACSAPCGC FCSDCIE YL+G DKFCPGTSRYCEMTKIN NHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ Sbjct: 18 CKICNELLINACSAPCGCRFCSDCIEHYLNGVDKFCPGTSRYCEMTKINANHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 190
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000015087.1 (SMESG000015087.1) HSP 1 Score: 515.383 bits (1326), Expect = 2.324e-178 Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL 1848 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITT+NGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL Sbjct: 198 QEKILEMERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMANENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSVIQSSRGQIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTKNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIYNIPCDAFVNGNDQLLIKCRVEEEHNL 446 HSP 2 Score: 347.436 bits (890), Expect = 7.103e-113 Identity = 165/173 (95.38%), Postives = 167/173 (96.53%), Query Frame = 3 Query: 96 CNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKINVNHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 614 C ICNEL+I ACSAPCGC FCSDCIE YL+G DKFCPGTSRYCEMTKIN NHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ Sbjct: 26 CKICNELLINACSAPCGCRFCSDCIEHYLNGVDKFCPGTSRYCEMTKINANHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 198
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070162.1 (SMESG000070162.1) HSP 1 Score: 257.299 bits (656), Expect = 9.662e-78 Identity = 139/203 (68.47%), Postives = 161/203 (79.31%), Query Frame = 3 Query: 9 LYDKMSESIYKIMXXXXXXXXXXXXXXXXCNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKIN-VNHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 614 + DKMSESIYKIMKEN FEI NEI +E +C ICNELMIKACSAPCGC FCSDCIEQYLDG DKFCPGTSR C+M IN N I ID +++I+E +VKCP++NC+F+ EL MIENH++ C+ RPIS PF IGC+ E + EMKAHL+ DNY HS LL D INN GE+ES+KNENIELK EN+QFKQK NIELQ ANQQ Sbjct: 4 ILDKMSESIYKIMKENNFEIVNEISKELKCYICNELMIKACSAPCGCCFCSDCIEQYLDGDDKFCPGTSRRCQMKMINYANDIVIDIRANVKISEIIVKCPRKNCEFEDELEMIENHVRTCDKRPISYPFNAIGCKVNEAMNDEMKAHLNEDNYWHSKLLTDLINNLLGEMESMKNENIELKRENSQFKQKIDNIELQSANQQ 206 HSP 2 Score: 216.468 bits (550), Expect = 2.146e-62 Identity = 136/298 (45.64%), Postives = 184/298 (61.74%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELN----------RLLRRETE----KINQIWPR--------NEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMA-----NENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSV----------IQSSRG-----------QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIY----NIPCDAFVNGNDQLLIKCRVEEE 1839 Q+KI EME M + E ++LN R LR E E IN I + QI+ LKQ+ +Q QQE NDE ++ R I++++++N N A E F ++IDG++N+L+++M+EMET+ INA+I G+FEWKIENL +Q KDK+I+S PF+SGP+GYKMCLSV Q RG +I V F+++RG+ +DKL WPFKY VTID I T NG+I+RS TIKYSDRP A W KPV DRNE I +Y +IP ++ N++LLIKCR+E E Sbjct: 206 QQKICEMESNEMENRGEIEQLNEEMVVLKNENRRLRSEIETNAQSINAIRQQIGIIETKSQLQIDELKQNHQQQQQELNDEAEMPRREINKLNEQNANGASRVDNNNGETFKQVIDGEINNLELRMIEMETRFINAQIRGEFEWKIENLSQQVKDKWIHSKPFYSGPNGYKMCLSVNINHLEIENLSQRVRGRRMCLNVIIDWRICVGFYMMRGDSDDKLAWPFKYAVTIDVIDTANGDIWRSETIKYSDRPDAAGWMKPVTDRNERIPVYKWPDHIPLNSPPIRNNRLLIKCRLERE 503
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070126.1 (SMESG000070126.1) HSP 1 Score: 245.743 bits (626), Expect = 3.174e-76 Identity = 133/199 (66.83%), Postives = 157/199 (78.89%), Query Frame = 3 Query: 21 MSESIYKIMXXXXXXXXXXXXXXXXCNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKIN-VNHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 614 MSESIYKIMKE KFEI +EI RE +CNICNELMIKACSAPCGC FCSDCIEQYLDGADKFCPGTSR C+M IN N I I+ +++I+E +VKCP++NC+F+ EL MI NH++ C+ PISCPF IGC+ E++ EMK HL+ DNY HS LLID INN E+ES+KNE IE+K EN+QFKQK NIELQ ANQ Sbjct: 1 MSESIYKIMKEKKFEIVSEISRELKCNICNELMIKACSAPCGCCFCSDCIEQYLDGADKFCPGTSRRCQMKMINYANDIVIENRANVKISEIIVKCPRQNCEFEDELEMIANHVRTCDKCPISCPFNAIGCKVNEVMNDEMKTHLNQDNYIHSKLLIDIINNLLSEMESMKNEIIEIKRENSQFKQKIDNIELQSANQH 199
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Match: SMESG000070162.1 (SMESG000070162.1) HSP 1 Score: 253.062 bits (645), Expect = 4.026e-76 Identity = 137/199 (68.84%), Postives = 158/199 (79.40%), Query Frame = 3 Query: 21 MSESIYKIMXXXXXXXXXXXXXXXXCNICNELMIKACSAPCGCSFCSDCIEQYLDGADKFCPGTSRYCEMTKIN-VNHISIDYPVSIRITETLVKCPKENCQFQAELRMIENHMKACNMRPISCPFAVIGCEKIEIIISEMKAHLSNDNYRHSNLLIDQINNFFGEVESLKNENIELKMENNQFKQKFANIELQWANQQ 614 MSESIYKIMKEN FEI NEI +E +C ICNELMIKACSAPCGC FCSDCIEQYLDG DKFCPGTSR C+M IN N I ID +++I+E +VKCP++NC+F+ EL MIENH++ C+ RPIS PF IGC+ E + EMKAHL+ DNY HS LL D INN GE+ES+KNENIELK EN+QFKQK NIELQ ANQQ Sbjct: 1 MSESIYKIMKENNFEIVNEISKELKCYICNELMIKACSAPCGCCFCSDCIEQYLDGDDKFCPGTSRRCQMKMINYANDIVIDIRANVKISEIIVKCPRKNCEFEDELEMIENHVRTCDKRPISYPFNAIGCKVNEAMNDEMKAHLNEDNYWHSKLLTDLINNLLGEMESMKNENIELKRENSQFKQKIDNIELQSANQQ 199 HSP 2 Score: 216.468 bits (550), Expect = 1.849e-62 Identity = 136/298 (45.64%), Postives = 184/298 (61.74%), Query Frame = 1 Query: 1102 QEKILEMERKTMNSMRETDELN----------RLLRRETE----KINQIWPR--------NEQIELLKQHFKQLQQEHNDEVKLLRSGIDEIHKKNENCAMA-----NENFSKIIDGKMNDLKIKMMEMETKLINAEICGKFEWKIENLLKQEKDKFIYSNPFFSGPSGYKMCLSV----------IQSSRG-----------QIFVSFHLIRGEYNDKLTWPFKYGVTIDAITTRNGNIYRSSTIKYSDRPSDARWGKPVDDRNEGIQIY----NIPCDAFVNGNDQLLIKCRVEEE 1839 Q+KI EME M + E ++LN R LR E E IN I + QI+ LKQ+ +Q QQE NDE ++ R I++++++N N A E F ++IDG++N+L+++M+EMET+ INA+I G+FEWKIENL +Q KDK+I+S PF+SGP+GYKMCLSV Q RG +I V F+++RG+ +DKL WPFKY VTID I T NG+I+RS TIKYSDRP A W KPV DRNE I +Y +IP ++ N++LLIKCR+E E Sbjct: 199 QQKICEMESNEMENRGEIEQLNEEMVVLKNENRRLRSEIETNAQSINAIRQQIGIIETKSQLQIDELKQNHQQQQQELNDEAEMPRREINKLNEQNANGASRVDNNNGETFKQVIDGEINNLELRMIEMETRFINAQIRGEFEWKIENLSQQVKDKWIHSKPFYSGPNGYKMCLSVNINHLEIENLSQRVRGRRMCLNVIIDWRICVGFYMMRGDSDDKLAWPFKYAVTIDVIDTANGDIWRSETIKYSDRPDAAGWMKPVTDRNERIPVYKWPDHIPLNSPPIRNNRLLIKCRLERE 496 The following BLAST results are available for this feature:
BLAST of TNF receptor-associated factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of TNF receptor-associated factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of TNF receptor-associated factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of TNF receptor-associated factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of TNF receptor-associated factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TNF receptor-associated factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of TNF receptor-associated factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of TNF receptor-associated factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016277 ID=SMED30016277|Name=TNF receptor-associated factor|organism=Schmidtea mediterranea sexual|type=transcript|length=2019bpback to top protein sequence of SMED30016277-orf-1 >SMED30016277-orf-1 ID=SMED30016277-orf-1|Name=SMED30016277-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=201bp MSESIYKIMKENKFEIENEIIREFRCNICNELMIKACSAPCGCSFCSDCIback to top protein sequence of SMED30016277-orf-2 >SMED30016277-orf-2 ID=SMED30016277-orf-2|Name=SMED30016277-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=244bp MERKTMNSMRETDELNRLLRRETEKINQIWPRNEQIELLKQHFKQLQQEHback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|