General transcription factor II-I repeat domain-containing protein 2A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Homology
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 49.2914 bits (116), Expect = 2.874e-12 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 911 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLASRNESDGLNYIPKIAELQTEFQKRLSDFKLYESELTLFSS 1014 HSP 2 Score: 41.9726 bits (97), Expect = 2.874e-12 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 1027 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 1107
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2 (GTF2I repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30775]) HSP 1 Score: 49.2914 bits (116), Expect = 3.030e-12 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 749 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLASRNESDGLNYIPKIAELQTEFQKRLSDFKLYESELTLFSS 852 HSP 2 Score: 41.9726 bits (97), Expect = 3.030e-12 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 865 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 945
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 48.9062 bits (115), Expect = 4.461e-12 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 916 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSS 1019 HSP 2 Score: 41.9726 bits (97), Expect = 4.461e-12 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 1032 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 1112
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Match: GTF2IRD2B (GTF2I repeat domain containing 2B [Source:HGNC Symbol;Acc:HGNC:33125]) HSP 1 Score: 48.521 bits (114), Expect = 4.591e-12 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 749 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSS 852 HSP 2 Score: 41.9726 bits (97), Expect = 4.591e-12 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 865 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 945
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1) HSP 1 Score: 72.0182 bits (175), Expect = 3.824e-22 Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 421 EIIILQNDLILQA--RKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 E+I L D L++ R+ +FWK V +YPN+ + + + FGSTY+CE FS LKL KSK RSVLTD+H ++ L ++ + Y + +V+ + Q H Sbjct: 515 EMIELSEDDRLKSVLREGTVEFWKIVPVERYPNVKQAALKLLSMFGSTYVCELLFSTLKLVKSKHRSVLTDTHVKELLRVATTEYEPDLKKIVETKECQVSH 616 HSP 2 Score: 52.373 bits (124), Expect = 3.824e-22 Identity = 30/111 (27.03%), Postives = 55/111 (49.55%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSN-MADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFI 332 +D W+SDL FL D L LN++LQGK K + D++ + A K L +Q+ + HF + + K + + +Y + + + FE RF + ++ ++ F+ Sbjct: 380 HDPQWISDLAFLVDVLHYLNGLNVDLQGKLKMLPDLVQSVFAFVNKLKLFKTHLQKRDYTHFPTLLKASGQKAEVVKGSTARYATLLENLEQSFEERFSNLQQKRQQITFL 490
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 60.4622 bits (145), Expect = 3.594e-17 Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLK--NINYKIDKYVAEI*KVVEDFEVRFQDFEKIK 314 D ++L+ L FLTD T L +LNL LQG+++ V + S I A + K LL + +N+L HF + + ++K + ++V ++ ++ +F RFQDFE ++ Sbjct: 384 TDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKSFLAKNDLTHFESCCELFQEMKGNGVILNFSQFVPKMDILIHEFNTRFQDFEGME 489 HSP 2 Score: 47.7506 bits (112), Expect = 3.594e-17 Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 1 Query: 421 EIIILQNDLILQARKFED-DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLV-KDMQTQSYH 720 E+ LQ D L + + F+K +++ +YP + + FGSTY+CE AFS + KSK R+ + DS Q + +S + + + D LV + + Q+ H Sbjct: 513 ELCELQGDQFLHSCSEKGVAFFKLLSQEQYPILRDFGMRMASMFGSTYICEKAFSDMGFIKSKYRNSICDSTLQQIIRISTTSISADIDELVAQQLHPQTSH 614
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: ENSXETT00000028445.1 (general transcription factor II-I repeat domain-containing protein 2-like [Source:NCBI gene;Acc:101734469]) HSP 1 Score: 52.7582 bits (125), Expect = 2.431e-13 Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 400 EQGPIENEIIILQNDLILQARK-FEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLV 693 E+ E+ LQ DL R+ F++ + + KY N+ + + FGSTY+CE AFS L KS R+ +++ Q+ L LS++ LN+D LV Sbjct: 498 ERMEYHMELCDLQADLFFATREELGVPFFRLLPKEKYRNLRDLALKMTSMFGSTYICERAFSELNHLKSNYRNSISNRTLQEILHLSITNINLNFDELV 596 HSP 2 Score: 42.3578 bits (98), Expect = 2.431e-13 Identity = 32/104 (30.77%), Postives = 60/104 (57.69%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID--KYVAEI*KVVEDFEVRFQDFEKI 311 +E +LS L FLTD T L +L ++ K++ + + + ++ K +LL ++ N+L +F + + + + N +D K+V +I ++E+F +RFQDF KI Sbjct: 377 NEDFLSSLAFLTDLTHYLHSLKKNIEAKDQLITQLYTHVSVFSNKLMLLKLNLISNDLTYFESCNELYREYEECNIFLDFSKFVEKIEVLIENFNLRFQDFSKI 480
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609]) HSP 1 Score: 60.077 bits (144), Expect = 2.898e-9 Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLK--NINYKIDKYVAEI*KVVEDFEVRFQDFE 305 D ++L+ L FLTD T L +LNL LQG+++ V + S I A + K LL + +N+L HF + + ++K + ++V ++ ++ +F RFQDFE Sbjct: 384 TDVSFLTALAFLTDITQFLNSLNLNLQGRDQNVSQLYSHIAAFRNKLHLLKSFLAKNDLTHFESCCELFQEMKGNGVILNFSQFVPKMDILIHEFNTRFQDFE 486
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Match: Gtf2ird2 (GTF2I repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:2149780]) HSP 1 Score: 47.7506 bits (112), Expect = 5.914e-9 Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVE---DFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L L+ LQG ++ V + I A K L + +NNL HF LK+++ + I K+VE +F+ R DF+ + E+T F S Sbjct: 743 WILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPT-------LKSVSRSESDGLNYIPKIVELKAEFQRRLSDFKSCESELTLFSS 846 HSP 2 Score: 31.5722 bits (70), Expect = 5.914e-9 Identity = 22/71 (30.99%), Postives = 42/71 (59.15%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNI-TKCSEYIYLCFGSTYLCESAFSYLKLTKSKQR 612 ++ E+I LQ + +L+ + + DF+K + + YP + C+ + + F ST++CE FS LKL+K + + Sbjct: 859 LQMEVIDLQCNTVLRTKYDKVGVPDFYKHL-WSSYPKYRSHCARMLSM-FSSTHICEQLFSILKLSKKEAQ 927
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q86UP8|GTD2A_HUMAN (General transcription factor II-I repeat domain-containing protein 2A OS=Homo sapiens OX=9606 GN=GTF2IRD2 PE=1 SV=3) HSP 1 Score: 49.2914 bits (116), Expect = 1.313e-11 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 749 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLASRNESDGLNYIPKIAELQTEFQKRLSDFKLYESELTLFSS 852 HSP 2 Score: 41.9726 bits (97), Expect = 1.313e-11 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 865 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 945
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q6EKJ0|GTD2B_HUMAN (General transcription factor II-I repeat domain-containing protein 2B OS=Homo sapiens OX=9606 GN=GTF2IRD2B PE=1 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 1.990e-11 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID-KYVAEI*KVVEDFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF + KL + N Y+ +I ++ +F+ R DF+ + E+T F S Sbjct: 749 WIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTL-----KLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSS 852 HSP 2 Score: 41.9726 bits (97), Expect = 1.990e-11 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLL 651 ++ E+I LQ + +L+ + + +F+K++ YP I FGSTY+CE FS +KL+K+K S L DS DS+L Sbjct: 865 LQMEVIDLQCNTVLKTKYDKVGIPEFYKYL-WGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQ-WDSVL 945
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|A4IFA3|GT2D2_BOVIN (General transcription factor II-I repeat domain-containing protein 2 OS=Bos taurus OX=9913 GN=GTF2IRD2 PE=2 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 6.375e-11 Identity = 37/115 (32.17%), Postives = 56/115 (48.70%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVE---DFEVRFQDFEKIK-EITGFIS 335 + + W+ DL FL D T L LN+ LQG ++ V + I A K L + +NNL HF LK+++ + I K+VE +F+ R DF+ + E+T F S Sbjct: 746 SSQDWIKDLAFLVDMTMHLNTLNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLARNNLAHFPT-------LKSVSRNESDGLNYIPKIVELKTEFQKRLSDFKLYESELTLFSS 853 HSP 2 Score: 38.891 bits (89), Expect = 6.375e-11 Identity = 29/92 (31.52%), Postives = 43/92 (46.74%), Query Frame = 1 Query: 403 QGPIENEIIILQNDLILQAR-------KFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLS 657 Q ++ E+I LQ + +L+ + +F W YP I FGSTY+CE FS +KL+K++ S L DS L +S Sbjct: 863 QEALQMEVIDLQCNTVLKTKYDKVGIPEFYKHLW-----GSYPKYKIHCAKILSMFGSTYICEQLFSIMKLSKTEYCSQLKDSQWDSVLHIS 949
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Match: sp|Q99NI3|GT2D2_MOUSE (General transcription factor II-I repeat domain-containing protein 2 OS=Mus musculus OX=10090 GN=Gtf2ird2 PE=2 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 3.510e-8 Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVE---DFEVRFQDFEKIK-EITGFIS 335 W+ DL FL D T L L+ LQG ++ V + I A K L + +NNL HF LK+++ + I K+VE +F+ R DF+ + E+T F S Sbjct: 743 WILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNNLAHFPT-------LKSVSRSESDGLNYIPKIVELKAEFQRRLSDFKSCESELTLFSS 846 HSP 2 Score: 31.5722 bits (70), Expect = 3.510e-8 Identity = 22/71 (30.99%), Postives = 42/71 (59.15%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNI-TKCSEYIYLCFGSTYLCESAFSYLKLTKSKQR 612 ++ E+I LQ + +L+ + + DF+K + + YP + C+ + + F ST++CE FS LKL+K + + Sbjct: 859 LQMEVIDLQCNTVLRTKYDKVGVPDFYKHL-WSSYPKYRSHCARMLSM-FSSTHICEQLFSILKLSKKEAQ 927
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A2H8TSF6 (General transcription factor II-I repeat domain-containing protein 2A OS=Melanaphis sacchari OX=742174 GN=GTF2IRD2 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.099e-38 Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 355 GVKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQ 705 ++ I IS+ F M+ E+EII +++D+ L+AR E FW ++ KYP + + I+ FGSTYLCE+AFS++K+ K++ RS L+D H + L L++S Y+ +YD LV DMQ Sbjct: 273 NIENISTQISNFFDMDSTKFESEIIKIKSDIFLKARGSETKFWNLLSEEKYPGLRNVALQIHSYFGSTYLCETAFSHMKMIKTEFRSTLSDDHLEQCLRLAVSNYSPDYDQLVNDMQ 389 HSP 2 Score: 87.8113 bits (216), Expect = 1.099e-38 Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 12 TWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 TWL +L FLTD TA L LN+ELQGK+ T+I+++S IN K+K +L + ++ LN+F N+ D K K ++ Y +E+ KV +FE RF+D +K++ I F+S Sbjct: 159 TWLQNLAFLTDITAHLNTLNVELQGKDGTIIELLSSINGFKSKLILFKSQLNESKLNNFPNLKDFFEKQK-CTVAVEIYCSEVEKVYNEFERRFKDIQKLEPIITFMS 265
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A3B3HZV5 (Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.639e-38 Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 358 VKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 V + +S LF + G +E EI+ LQNDL+L+A + +FW V++ KY + + I FGSTYLCESAFS + K+K R+ LTD+H QDSL +++S Y+ +Y+ LV MQ Q+ H Sbjct: 495 VTSTAEQLSALFTLNAGDVEMEILTLQNDLLLKAHQSAPNFWCLVDQEKYSGVCTAAMKIACFFGSTYLCESAFSNMNFIKNKHRTCLTDAHLQDSLRIAVSNYSPDYNALVSSMQCQTSH 615 HSP 2 Score: 78.9518 bits (193), Expect = 1.639e-38 Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMA----DNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 D W+ DL FLTD T L +LN ELQGK+KTV IS +NA + K + +Q+ + HF ++ DN+ +N + KY I ++ ++FE RF DFE+++ F++ Sbjct: 374 DPEWVLDLAFLTDLTGNLNHLNRELQGKDKTVAHTISAVNAFRAKLSIFSTQLQKKKMLHFPSVQAALNDNVSASAALNEAVKKYSQVINRLGQEFEDRFCDFEQLEPCVSFVT 487
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A096MF30 (Dimer_Tnp_hAT domain-containing protein OS=Poecilia formosa OX=48698 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.159e-37 Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 358 VKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 V + NI+ +F + +ENEI+ LQ D+ L++R FW + KYPN+ KC+ + FGSTYLCESAFS++K+ KSK RS +TD+H + L L++S Y+ +Y L QS H Sbjct: 443 VDSLASNIAMMFHLNSSGVENEILTLQADIELKSRA-HGQFWNLLTEGKYPNMRKCATSLTALFGSTYLCESAFSHMKIIKSKHRSSMTDAHLEACLKLAISSYSPDYAALQCRSSDQSNH 562 HSP 2 Score: 82.0333 bits (201), Expect = 4.159e-37 Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKID--KYVAEI*KVVEDFEVRFQDFEKIKEITGFI 332 ND+ WL DL FLTD T +L +LN+ELQGK+KTVI++IS +NA K K +Q+++L +F N+A L + ++D +Y +I + +F+ FQDF ++ + F+ Sbjct: 322 NDDQWLLDLAFLTDLTNMLNDLNIELQGKDKTVINMISSVNAFKRKMQHQPSKLQRHDLTNFQNVASELEMKGKTSEQLDSARYTEQIENCLSEFDSHFQDFALLEPVATFM 433
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A1A8SK74 (Uncharacterized protein OS=Nothobranchius rachovii OX=451742 GN=Nfu_g_1_023929 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.450e-36 Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1 Query: 367 IRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 I + +S F + G +E EII LQNDL L++ + E +FW + KY + + + FGSTYLCESAFS + KSK R+ LTD+H DS+ +++S YT +Y LV MQ Q H Sbjct: 362 IAEQLSATFSLNAGEVEIEIITLQNDLHLKSHQSEPNFWCLEDTEKYKGVCTAAMKVACMFGSTYLCESAFSDMNFIKSKHRTRLTDAHLHDSVRVAVSSYTPDYSKLVNSMQCQVSH 479 HSP 2 Score: 79.7221 bits (195), Expect = 5.450e-36 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMA----DNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 D W+ DL FLTD T L +LN ELQGK KTV D+IS +NA K K + +Q+ + HF ++ DN + + +DKY I ++ ++FE RF+DF++++ FIS Sbjct: 238 DIEWILDLAFLTDITGKLNHLNCELQGKGKTVADMISAVNAFKAKMNIFSVHLQKKRVLHFPSVQSVLNDNASASETFDKVVDKYSEVINRLGQEFENRFRDFDQLEPCVSFIS 351
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Match: A0A484CY62 (Uncharacterized protein OS=Perca flavescens OX=8167 GN=EPR50_G00110450 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.516e-35 Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 373 QNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 + +S F ++ G +E EII LQNDL L+A + +FW V+ KY + + + FGSTYLCESAFS + K+K R+ LTD+H +DSL +++S YT +Y+ LV MQ QS H Sbjct: 500 EQLSATFNLDAGQVEIEIITLQNDLHLKAYQAAPNFWCLVDTEKYSGVCTAAMKVASLFGSTYLCESAFSDMNFIKNKHRTRLTDAHLKDSLTVAVSSYTPDYNTLVNSMQCQSSH 615 HSP 2 Score: 73.9442 bits (180), Expect = 3.516e-35 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSN----MADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 D W DL FLTD T L +LN +LQGK KTV+D+IS +NA K K + D+Q+ + HF + + DN + + +KY I ++ ++FE RF D +++ FIS Sbjct: 374 DTEWTLDLAFLTDITGKLNDLNCKLQGKCKTVVDMISALNAFKAKMNIFSVDLQRKKVLHFPSVQSVLKDNASASETFDKVAEKYCEVINRLGQEFENRFCDLHQLEPCVSFIS 487
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000039226.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000099.1:564912:568121:1 gene:ENSAMXG00000042173.1 transcript:ENSAMXT00000039226.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 94.7449 bits (234), Expect = 9.414e-33 Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 358 VKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSY 717 ++ + +F + G ++ EII L+ND+ ++AR + DFW V+R +YP+++ C+ + FGSTY CE +F +K+ KSK R+ LTD+H D + L++S YT +Y +Q Q++ Sbjct: 476 IEELSAKFQQVFELPNG-VDMEIIDLENDIEMKARSRDKDFWGLVSRERYPSLSACALKVKAFFGSTYFCEMSFPQMKIIKSKYRTCLTDAHLTDCVRLAVSNYTPDYKAPADSVQPQNF 594 HSP 2 Score: 64.6994 bits (156), Expect = 9.414e-33 Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNI-NYKIDKYVAEI*KVVEDFEVRFQDFEK--IKEITG 326 D+TWL DL FLTD T+ L LN ELQGK+ V ++S +NA K K L ++ L HF N+ L+ + N ++ + + + ++ E+F RF++ K I+E++ Sbjct: 372 DDTWLLDLAFLTDLTSKLNELNCELQGKDCDVPHMVSAVNAFKVKLALWTSQLKCKKLTHFQNVDKMLNNISNKDSFHPENFCIHLNRLEEEFSKRFEELNKDIIEELSA 481
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000050151.1 (pep primary_assembly:Astyanax_mexicanus-2.0:17:23214084:23215952:-1 gene:ENSAMXG00000029603.1 transcript:ENSAMXT00000050151.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.0922 bits (170), Expect = 1.077e-21 Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 406 GPIENEIIILQNDLILQ---ARKFEDDFW-KFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 GP++ ++I LQ D+ L+ AR FW + V+ +P++ K + +I FGSTY CE+AFS + + K+K RS LT+ H + ++L+ + + +L + Q H Sbjct: 514 GPLQMQMIDLQADVALKEQFARTESTTFWLQMVSETAFPDLKKVALFILTMFGSTYSCEAAFSTMNIIKTKYRSKLTNEHLHMCMRMALTSFKPRFKMLAGQAKAQFSH 622 HSP 2 Score: 52.373 bits (124), Expect = 1.077e-21 Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNI--NYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFI 332 NDE + + FL D + L LNL+LQGKN ++ D+++ + + + K + ED+ Q + HF K+K + + + +V + K++E+F RF F +E+ FI Sbjct: 385 NDEKNMGIIAFLADIMSHLNGLNLQLQGKNNSICDLMTAVRSFQRKLQVFKEDL-QGDYTHFP-------KVKQVQGHRDVSSFVEFVDKLIENFSKRFDSFSIGEELKLFI 488
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000037725.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:29162452:29166863:1 gene:ENSAMXG00000037303.1 transcript:ENSAMXT00000037725.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 56.225 bits (134), Expect = 3.908e-18 Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 3 Query: 15 WLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFE 305 W++DL FLTD T +L LNL+LQGK++ + + + A + K L +++ NL HF + KN N+ V E K+ F RF F Sbjct: 565 WIADLAFLTDLTGLLNELNLKLQGKDRLICHLFEAVCAFEMKLNLFATQLKKGNLTHFPTCQEAFAH-KNYNWSRHSCVLEDLKLA--FSARFGQFR 658 HSP 2 Score: 54.299 bits (129), Expect = 3.908e-18 Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 406 GPIENEIIILQNDLILQARKFED---DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 G ++ EII L+ ++ + E +F++ ++R ++PN+ ++ FGSTY+CE FS +KL KS R+ LTD + Q L L+ + + + LV + + H Sbjct: 680 GELQPEIIELKCSTAMRTKHREMPLLEFYQSLDREQFPNLFANAQKWISMFGSTYICEQMFSLMKLNKSPLRTRLTDENLQAVLRLATTSLEPDINQLVSERRCNISH 787
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000035253.1 (general transcription factor II-I repeat domain-containing protein 2B-like [Source:NCBI gene;Acc:111191579]) HSP 1 Score: 53.5286 bits (127), Expect = 2.293e-16 Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFED----DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDV 687 ++ E+I LQ+D L+A KF+D DF++ + P + + + FGSTYLCE FS + L K+K RS LTD + L ++ S L D+ Sbjct: 491 LQMELIELQSDSGLRA-KFQDAAIQDFYRLLPPGLMPQLRLHAARVLSMFGSTYLCEQMFSIMNLNKNKHRSCLTDDNLHAVLRIA-SAQDLKPDI 584 HSP 2 Score: 50.8322 bits (120), Expect = 2.293e-16 Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGF 329 +D WL D L D T L LN +LQG+ + + + I A + K L M +Q+NL HF + ++ L + + ++ ++ +F+ RF DF + +GF Sbjct: 368 SDPKWLCDFAVLCDITEHLAQLNQKLQGRKQVITQMSDMITAFQRKLDLWMCQAKQDNLAHFP-VCQSMSALFPGTFSCAQLTTKLSRLKTEFDRRFSDFR--GQQSGF 473
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Match: ENSAMXT00000054244.1 (SCAN domain-containing protein 3-like [Source:NCBI gene;Acc:111191664]) HSP 1 Score: 55.8398 bits (133), Expect = 4.443e-15 Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVED-FEVRFQDFEKIKEITGFI 332 DE ++S++ FL D L LNL+LQGK+KT++D++ + + + DI N L HFS LK K+ + + + K + D F RF D+ K+I FI Sbjct: 388 DENFMSNVAFLCDIFGHLNKLNLQLQGKDKTIVDMVEKLESFTRMLEMFEADISTNRLLHFST-------LKRTAGKVTELMVDFIKRLRDNFTSRFDDYSIPKDIIDFI 490 HSP 2 Score: 44.2838 bits (103), Expect = 4.443e-15 Identity = 28/113 (24.78%), Postives = 56/113 (49.56%), Query Frame = 1 Query: 397 MEQGPIENEIIILQNDLILQ-ARKFEDDFWKF----VNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 ++Q +E EII Q +++ A + + W F +Y N+ + Y F STY+CES+FS + K+ +R+ LT + ++ L + ++ + ++ +V + H Sbjct: 512 LDQAALEMEIIHFQTTSVVRDALRSAESVWGFWVGLPCSEEYSNLKTIALYTLTMFPSTYVCESSFSAMNAIKTHERNRLTHKNLENCLRIKVTSISPDFKKIVTSGRCHFSH 624
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000033470.1 (pep primary_assembly:ASM223467v1:22:24335229:24337076:1 gene:ENSORLG00000028972.1 transcript:ENSORLT00000033470.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 110.923 bits (276), Expect = 1.196e-41 Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 358 VKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 V + +S LF + G +E EI+ LQNDL+L+A + +FW V++ KY + + I FGSTYLCESAFS + K+K R+ LTD+H QDSL +++S Y+ +Y+ LV MQ Q+ H Sbjct: 495 VTSTAEQLSALFTLNAGDVEMEILTLQNDLLLKAHQSAPNFWCLVDQEKYSGVCTAAMKIACFFGSTYLCESAFSNMNFIKNKHRTCLTDAHLQDSLRIAVSNYSPDYNALVSSMQCQTSH 615 HSP 2 Score: 78.9518 bits (193), Expect = 1.196e-41 Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMA----DNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 D W+ DL FLTD T L +LN ELQGK+KTV IS +NA + K + +Q+ + HF ++ DN+ +N + KY I ++ ++FE RF DFE+++ F++ Sbjct: 374 DPEWVLDLAFLTDLTGNLNHLNRELQGKDKTVAHTISAVNAFRAKLSIFSTQLQKKKMLHFPSVQAALNDNVSASAALNEAVKKYSQVINRLGQEFEDRFCDFEQLEPCVSFVT 487
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000046355.1 (pep primary_assembly:ASM223467v1:21:4582475:4584322:1 gene:ENSORLG00000025904.1 transcript:ENSORLT00000046355.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 106.686 bits (265), Expect = 3.482e-38 Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 373 QNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 + +S F ++ G +E EII LQNDL L+A + +FW+ V+ KY + + + FGSTYLCESAFS + K+K R+ LTD+H +DSL +++S YT +Y+ LV MQ QS H Sbjct: 500 EQLSATFNLDAGQVEIEIITLQNDLHLKAYQAAPNFWRLVDTEKYSGVCTAAMKVASLFGSTYLCESAFSDMNFIKNKHRTRLTDAHLRDSLTVAVSSYTPDYNTLVNSMQCQSSH 615 HSP 2 Score: 71.2478 bits (173), Expect = 3.482e-38 Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSN----MADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 D W DL FL D T L LN +LQGK KTV+D+IS +NA K K D+Q+ + HF + + DN + +KY+ I ++ ++FE RF D +++ FIS Sbjct: 374 DTEWTLDLAFLVDITGKLNLLNCQLQGKGKTVVDMISALNAFKAKMNAFSADLQRKKVLHFPSVQSVLKDNASASETFEKVAEKYIEVINRLGQEFENRFCDLHQLEPCVFFIS 487
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000044825.1 (general transcription factor II-I repeat domain-containing protein 2-like [Source:NCBI gene;Acc:111949247]) HSP 1 Score: 68.5514 bits (166), Expect = 4.035e-22 Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFED----DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVK 696 ++ E+I Q D L+ RKF DF+ V++ +YP + K ++ + FGSTY+CE FS + L K K R LTDSH QD L LS+S N L+K Sbjct: 456 LQMELIEFQCDTELR-RKFVSLPLRDFYPHVSKQRYPQMRKNAQVMLSLFGSTYICEQTFSLMNLNKIKLRGTLTDSHLQDILTLSVSKLQPNIQSLIK 553 HSP 2 Score: 55.4546 bits (132), Expect = 4.035e-22 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDK---YVAEI*KVVEDFEVRFQDFEK 308 D+ W+ D+ F+ D T +L NLN++LQGK + + ++ I A + K LL + N HF + L+++N ++D+ Y + + ++F +RF DF+K Sbjct: 336 TDKRWIFDVAFMVDITDLLNNLNVKLQGKEQIITELFDHIKAFQMKLQLLCRHLSAGNFAHFPS-------LRDVNVEVDRLPEYGELLSNLNKEFNLRFVDFKK 433
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000027093.1 (general transcription factor II-I repeat domain-containing protein 2B-like [Source:NCBI gene;Acc:111947639]) HSP 1 Score: 65.4698 bits (158), Expect = 6.993e-22 Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 1 Query: 394 LMEQGP--IENEIIILQNDLILQARKFED----DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVK 696 +++ P ++ E+I LQ+D++L A +F DF+ + + +P++ + ++ I + FGSTY CE AFS +K KSK RS +TD H L ++ S ++ LV+ Sbjct: 469 IVDDAPSEVQMELIELQSDMLL-AERFRSVSLLDFYSSLKKENFPHLRRHAQKILVLFGSTYHCEQAFSVMKFNKSKHRSSVTDDHLSAVLRIATSDIQPDFCALVQ 574 HSP 2 Score: 57.7658 bits (138), Expect = 6.993e-22 Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 +DE W++DL F D TA++ LN++LQ K V ++ S + A K L ++ NNL H L + K + KY + + +F RFQDF+ ++ +S Sbjct: 357 SDEDWVADLGFAVDVTALMNQLNVKLQSKGLFVHEMYSAVKAFMRKLQFLSSQVKDNNLTHLP----TLKEAKRPEGHLQKYSTMLEALHAEFSRRFQDFKTLESEMHVVS 463
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Match: ENSORLT00000033014.1 (general transcription factor II-I repeat domain-containing protein 2 [Source:NCBI gene;Acc:101164918]) HSP 1 Score: 72.0182 bits (175), Expect = 1.959e-19 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLN--HFSNMADNLHKLK--NINYKIDKYVAEI*KVVEDFEVRFQDFEKI-KEITGFIS 335 +D WL+DL FL D T L LN LQG+N V + S I A TK L + + Q N HF + + + L N++ ++ KY A++ + E+F+ RFQDF I KEIT F S Sbjct: 372 SDPVWLADLAFLVDITRHLNALNTSLQGENAAVSQLYSHIKAFGTKLQLFQKHLLQRPPNPAHFPLLQEIMTSLSQNNVSAQMRKYAADMASLAEEFQQRFQDFAAIEKEITLFSS 487 HSP 2 Score: 43.1282 bits (100), Expect = 1.959e-19 Identity = 32/106 (30.19%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 412 IENEIIILQNDLILQARKFE---DDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 ++ E+I LQ D+ +R + F++ ++++++ I + + FGSTYLCE FS + K+ R+ L DSH +D L + T+ L MQ++SY+ Sbjct: 500 LQMELIELQCDIECCSRHQQLPLVSFYRQLDKSRFRRIRTFAMKMLSLFGSTYLCEKTFSVMNFNKNCVRTRLNDSHLRDILRIKT---TVCEPDLAFVMQSRSYY 602
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000060663.1 (SMESG000060663.1) HSP 1 Score: 209.534 bits (532), Expect = 1.286e-77 Identity = 98/122 (80.33%), Postives = 109/122 (89.34%), Query Frame = 1 Query: 355 GVKRIRQNISDLFLMEQGPIENEIIILQNDLILQARKFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQSYH 720 VKRI Q ISD+FL+ QGP++NEIIILQNDLILQARKFEDDFWK+V RAKYP++TKCSEYIY CFGSTYLCESAFSYLKL K KQRSVL+DSHTQDSL+LSLS Y NYD L+KDMQTQ +H Sbjct: 69 SVKRISQKISDVFLIWQGPLDNEIIILQNDLILQARKFEDDFWKYVKRAKYPDVTKCSEYIYSCFGSTYLCESAFSYLKLVKGKQRSVLSDSHTQDSLILSLSVYKPNYDFLIKDMQTQLFH 190 HSP 2 Score: 99.7525 bits (247), Expect = 1.286e-77 Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 3 Query: 153 MEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFIS 335 M+D+QQNNLNHFSNMA+NLHK KNINY I+KYVAE KVVED EVRFQDFEKIKEI FIS Sbjct: 1 MKDLQQNNLNHFSNMANNLHKHKNINYNINKYVAETQKVVEDLEVRFQDFEKIKEIVEFIS 61
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000079713.1 (SMESG000079713.1) HSP 1 Score: 63.5438 bits (153), Expect = 8.338e-23 Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 379 ISDLFLMEQGPIENEIIILQNDLILQAR----KFEDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNYDVLVKDMQTQS 714 I + E + E+I +Q ++IL+ + + +FWKFV +KY + S + FG+TY CES +S +K KSK RS LT+ H + +L+ Y ++ V MQT + Sbjct: 530 IPKYLIPETSAGQKELIEIQENIILKMQHKTSQSPIEFWKFVAESKYSRLKNASCKLISIFGTTYCCESLYSTMKFIKSKYRSELTNEHLTGLIRTALTSYEPDFQKFVVRMQTHT 645 HSP 2 Score: 62.003 bits (149), Expect = 8.338e-23 Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFEKIKEITGFI 332 D+ WL DL FLTD I+ +LNL+LQGK T+ D I + K K +L D+ NLNHF + +N + K+++Y ++ +++ FE+R++D E K F+ Sbjct: 413 DDNWLHDLMFLTD---IMQSLNLQLQGKQNTIADFTQTIFSFK-KLMLFKNDLTTRNLNHFPWLKSK--SSQNKDPKLEEYQEKLQELINYFELRYEDLEIFKTFINFL 515
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000020950.1 (SMESG000020950.1) HSP 1 Score: 80.1073 bits (196), Expect = 3.709e-18 Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 3 Query: 6 DETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDK 245 DE WL DL FLTDF + L +LNLELQGK+KT+ ++S + A K K LL+ +++NNLN+F N+ L+ L INY +K Sbjct: 52 DEKWLVDLAFLTDFRSKLNDLNLELQGKDKTIFQMVSSVKAFKQKLSLLVGKLEKNNLNYFPNLMTQLNSLVAINYDTNK 131
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000009055.1 (SMESG000009055.1) HSP 1 Score: 78.1814 bits (191), Expect = 1.925e-15 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 361 KRIRQNISDLFLMEQGPIENEIIILQNDLILQARKF-EDDFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGY 669 + I I++ + +E+EII L++D+ L++R ED+FW ++ KYP + Y+ FGSTYLCESAFS + + K+K RS LTD H L +++S Y Sbjct: 734 EEIATQINEFLDSDSTCLEDEIIALKSDIQLKSRATTEDNFWNLISEEKYPILRIVVGYMSAFFGSTYLCESAFSSMNVIKTKHRSCLTDGHLASCLRIAISSY 837
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Match: SMESG000015269.1 (SMESG000015269.1) HSP 1 Score: 58.5362 bits (140), Expect = 2.226e-14 Identity = 39/124 (31.45%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 364 RIRQNISDLFLME-QGPIENEIIILQNDLILQARKFED---DFWKFVNRAKYPNITKCSEYIYLCFGSTYLCESAFSYLKLTKSKQRSVLTDSHTQDSLLLSLSGYTLNY-DVLVKDMQTQSYH 720 R+ QN D + E ++ EII LQ + ++ + E DF+K+++ ++PN+ K + F +TY+CE F +K KSK R+ L+D H Q L++ ++ + NY D+L + Q H Sbjct: 455 RLFQNPFDCNVAEISSQLQIEIIDLQANEQIKDKYKEGNLIDFYKYLDAKEFPNLKKFARKYISMFETTYVCEQTFPRMKYLKSKYRANLSDDHLQSLLMIGVTNFDPNYKDILQQKKQFHHSH 578 HSP 2 Score: 38.891 bits (89), Expect = 2.226e-14 Identity = 30/101 (29.70%), Postives = 43/101 (42.57%), Query Frame = 3 Query: 3 NDETWLSDLEFLTDFTAILCNLNLELQGKNKTVIDIISCINACKTKFVLLMEDIQQNNLNHFSNMADNLHKLKNINYKIDKYVAEI*KVVEDFEVRFQDFE 305 +D WL F D + LNL+ Q KN D+ S I A +TK L + + HF D +K + I V I + E+F+ RF D + Sbjct: 349 SDAAWLWKFAFFADAATHVNTLNLKFQEKNNLFCDLYSQIKAFQTKLQLFESQVTECIFTHFP-CCDEFNKKTEEQFPIAFAVKIIADLKENFQKRFSDLD 448 The following BLAST results are available for this feature:
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of General transcription factor II-I repeat domain-containing protein 2A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016234 ID=SMED30016234|Name=General transcription factor II-I repeat domain-containing protein 2A|organism=Schmidtea mediterranea sexual|type=transcript|length=1075bpback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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