SMED30016224

Overview
NameSMED30016224
Smed IDSMED30016224
Length (bp)1991
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016224 (SMED30016224) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016224 (SMED30016224) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016224 (SMED30016224) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016224 (SMED30016224) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30016224

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016224SMESG000033226.1 SmedASXL_007825SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30016224SMESG000033226.1 SmedASXL_007825SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30016224SMESG000034607.1 SMESG000033226.1 SmedASXL_016965SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
posterior muscle cellSMED30016224SMESG000034607.1 dd_Smed_v4_6645_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30016224SMESG000034607.1 dd_Smed_v4_6645_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016224SMESG000033227.1 SMESG000034607.1 SMESG000033226.1 Contig34157uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30016224SMESG000033227.1 SMESG000034607.1 SMESG000033226.1 Contig34157newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016224 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018934:8197..10318 -9256
v31.005079:41..1952 +8394
v31.000431:34957..36729 -6798
Homology
BLAST of SMED30016224 vs. Planmine SMEST
Match: SMESG000034607.1 (SMESG000034607.1)

HSP 1 Score: 1016.14 bits (2626), Expect = 0.000e+0
Identity = 564/601 (93.84%), Postives = 579/601 (96.34%), Query Frame = 3
Query:   30 MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQISTSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGTNKYSMNIEEDSVYIINNVNKIDEKPLQFLNEKIIDENQSIQIEQMEIDLVPHEVSRNSISDVMXXXXXXXXHQKEVDFQYIKTTKIDKIQELDEQYENASSGMESSPEFDKTFDVKIVNRVEDNKTPFQTDSIKSLAILNQKSINEXXXXXXXXXXXXXXXXXXXDSKVGAIPNR----STAIKTPKQPLYKSKFHPTAQGSNSMSKWKSNSLVKSQTNLCSGSKSQTVSSQKKPLTEIRKQQERIEEDKRRKLEEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIXXXXXXXXXXXXLQRKQNPIDKFPMFPLSSNQMANAMKPINCNPHGKANVIXXXXXXXXXXXCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYXXXXXXXXXXXXXXXXXNQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEARYVRIDYSEVFGEDTTIEPGVLEAWL 1820
            MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQISTSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGTNKYSMNIEEDSVYIINNVNKIDEKPLQFLNEKI+DENQSIQIEQMEIDLVPHEVSRNSISDVMEIIEEDEEHQKEVDFQYIKTTKIDKIQELDEQYENASSGMESSPEFDKTFDVKIVNRVEDNKTPFQTDSIKSLAILNQK      S+++  SKL  ++  L  SK+G  PNR    ++ IKTP+QPLYKSKFHPTAQGSNSMSKWKSNSLVKSQTNLCSGS SQT+SSQKKPLTEIRKQQERIEE+KRRKL+EIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIASSQSQKSTTATLQRKQNPIDKFPMFPL+SNQMANAMKPINCNPHGKANVISSSNTTGSQSSCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYDLSGLVDVDSDEDEDEENQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEAR+VRIDYSEVFGEDTTIEPGVLEAWL
Sbjct:    1 MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQISTSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGTNKYSMNIEEDSVYIINNVNKIDEKPLQFLNEKIMDENQSIQIEQMEIDLVPHEVSRNSISDVMEIIEEDEEHQKEVDFQYIKTTKIDKIQELDEQYENASSGMESSPEFDKTFDVKIVNRVEDNKTPFQTDSIKSLAILNQKP-----STIQANSKLFELNTNLSASKLGPPPNRLPVKNSQIKTPQQPLYKSKFHPTAQGSNSMSKWKSNSLVKSQTNLCSGSTSQTLSSQKKPLTEIRKQQERIEEEKRRKLDEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIASSQSQKSTTATLQRKQNPIDKFPMFPLASNQMANAMKPINCNPHGKANVISSSNTTGSQSSCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYDLSGLVDVDSDEDEDEENQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEARHVRIDYSEVFGEDTTIEPGVLEAWL 596          
BLAST of SMED30016224 vs. Planmine SMEST
Match: SMESG000033226.1 (SMESG000033226.1)

HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0
Identity = 472/609 (77.50%), Postives = 517/609 (84.89%), Query Frame = 3
Query:   30 MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQISTSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGTNKYSMNIEEDSVYIINN----VNKIDEKPLQFLNEKIIDENQSIQIEQMEIDLVPHEVSRNSISDVMXXXXXXXXHQKEVDFQ-YIKTTKIDKIQE--LDEQYENASSGMESSPE---FDKTFDVKIVNRVEDNKTPFQ--TDSIKSLAILNQKSINEXXXXXXXXXXXXXXXXXXXDSKVGAIPNRSTAIKTPKQPLYKSKFHPTAQGSNSMSKWKSNSLVKSQTNLCSGSKSQTVSSQKKPLTEIRKQQERIEEDKRRKLEEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIXXXXXXXXXXXXLQRKQNPIDKFPMFPLSSNQMANAMKPINCNPHGKANVIXXXXXXXXXXXCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYXXXXXXXXXXXXXXXXXNQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEARYVRIDYSEVFGEDTTIEPGVLEAWL 1820
            M D A+SYIKCVS+PSENIK+QSKK+ +IFLK FK  + NLL KLNK QI+ S +I+++ E+I+ + KIK +RLQKIILLT++  ENISDDE E IT+  +++  N  +D +          N  D+K     N + +++N SIQ EQM++DL+P+E  R+SI+DVMEII+EDEE+QKEVDF+  IK  KIDK  +  +D + ENASSG+ESS +    DK F VKIVNRVEDN++  Q  T SIKSLAILNQKSINEKLSSVKMKSKLLTMSMALKDSKVGAIPNRSTAIKTPKQPLYK                     +KSQTNLCSGSKSQTVSSQKKPLTEIRKQQERIEEDKRRKLEEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIASSQSQKSTTATLQRKQNPIDKFPMFPLSSNQMANAMKPINCNPHGKANVISSSNTTGSQSSCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYDLSGLVDVDSDEDEDEENQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEARYVRIDYSEVFGEDTTIEPGVLEAWL
Sbjct:    1 MNDSAVSYIKCVSIPSENIKSQSKKHTQIFLKKFKLHKCNLLAKLNKKQINKSHIIRHFKESIEQLNKIKRERLQKIILLTKDLFENISDDETEVITEELDQF--NTIDDVLLTTQERQCETNITDKKSSN--NNQTLNKNVSIQNEQMDVDLLPNETRRDSIADVMEIIDEDEENQKEVDFEDNIKEIKIDKFPQVDIDNRKENASSGVESSSQEKPVDKIFGVKIVNRVEDNRSYPQPKTGSIKSLAILNQKSINEKLSSVKMKSKLLTMSMALKDSKVGAIPNRSTAIKTPKQPLYK---------------------IKSQTNLCSGSKSQTVSSQKKPLTEIRKQQERIEEDKRRKLEEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAGSSLKAAHAAGLPSSLPQRPIIASSQSQKSTTATLQRKQNPIDKFPMFPLSSNQMANAMKPINCNPHGKANVISSSNTTGSQSSCVLLPEFKTPFSKKRLTILSDSCKKIIDSHESYDLSGLVDVDSDEDEDEENQPKSRIPRWSRKENGTLEKLVRYQMKHSNPSDIILEARYVRIDYSEVFGEDTTIEPGVLEAWL 584          
BLAST of SMED30016224 vs. Planmine SMEST
Match: SMESG000033226.1 (SMESG000033226.1)

HSP 1 Score: 280.026 bits (715), Expect = 8.528e-89
Identity = 194/310 (62.58%), Postives = 239/310 (77.10%), Query Frame = 3
Query:   30 MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQISTSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGTNKYSMNIEEDSVYIIN----NVNKIDEKPLQFLNEKIIDENQSIQIEQMEIDLVPHEVSRNSISDVMXXXXXXXXHQKEVDFQ-YIKTTKIDKI--QELDEQYENASSGMESSPE---FDKTFDVKIVNRVEDNKTPFQ--TDSIKSLAILNQKSINEXXXXXXXXXXXXXXXXXXXDSKVGAIPNRSTAIKTPKQPLYKSKFHPTAQGS 923
            M D A+SYIKCVS+PSENIK+QSKK+ +IFLK FK  + NLL KLNK QI+ S +I+++ E+I+ + KIK +RLQKIILLT++  ENISDDE E IT+  +++  N  +D +          N  D+K     N + +++N SIQ EQM++DL+P+E  R+SI+DVMEII+EDEE+QKEVDF+  IK  KIDK    ++D + ENASSG+ESS +    DK F VKIVNRVEDN++  Q  T SIKSLAILNQKSINEKLSSVKMKSKLLTMSMALKDSKVGAIPNRSTAIKTPKQPLYKSKFHPTAQG+
Sbjct:    1 MNDSAVSYIKCVSIPSENIKSQSKKHTQIFLKKFKLHKCNLLAKLNKKQINKSHIIRHFKESIEQLNKIKRERLQKIILLTKDLFENISDDETEVITEELDQF--NTIDDVLLTTQERQCETNITDKKSSN--NNQTLNKNVSIQNEQMDVDLLPNETRRDSIADVMEIIDEDEENQKEVDFEDNIKEIKIDKFPQVDIDNRKENASSGVESSSQEKPVDKIFGVKIVNRVEDNRSYPQPKTGSIKSLAILNQKSINEKLSSVKMKSKLLTMSMALKDSKVGAIPNRSTAIKTPKQPLYKSKFHPTAQGA 306          
The following BLAST results are available for this feature:
BLAST of SMED30016224 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30016224 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000034607.10.000e+093.84SMESG000034607.1[more]
SMESG000033226.10.000e+077.50SMESG000033226.1[more]
SMESG000033226.18.528e-8962.58SMESG000033226.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016224 ID=SMED30016224|Name=SMED30016224|organism=Schmidtea mediterranea sexual|type=transcript|length=1991bp
TTAAAGATTTTTAAATATTTTTTATTATTATGACTGATCATGCTATATCC
TATATTAAATGCGTTTCAGTTCCATCAGAAAATATTAAAACTCAATCTAA
GAAAAATATCGAAATATTTTTGAAAGATTTTAAAAAGCGAAGACGCAACT
TATTGACAAAGTTAAATAAAAATCAAATAAGTACATCACAAGTTATTCAG
TATTACAATGAAAATATTGATCTAATAAAAAAAATTAAATATGATAGATT
ACAAAAAATTATTTTACTAACTCAAGAATTTATGGAAAATATAAGTGATG
ATGAACAGGAACATATAACAGATGGAACTAATAAATATAGTATGAATATC
GAAGAGGATTCTGTTTATATTATAAATAACGTAAATAAAATCGACGAAAA
ACCACTACAATTTTTAAATGAAAAAATAATTGATGAAAATCAATCAATCC
AAATTGAACAAATGGAAATAGATTTAGTTCCCCACGAAGTTAGTAGAAAC
TCAATATCAGACGTTATGGAAATAATTGAAGAAGATGAGGAACATCAAAA
AGAAGTCGATTTTCAATATATAAAAACAACAAAAATTGATAAAATTCAAG
AACTAGATGAACAATACGAAAATGCCAGTTCTGGAATGGAGTCGTCACCA
GAATTCGATAAAACATTCGATGTTAAAATAGTTAATAGAGTCGAGGACAA
TAAAACCCCCTTTCAAACAGATTCCATTAAATCATTAGCAATTTTAAACC
AGAAATCAATAAATGAAAAATTATCGTCTGTAAAAATGAAATCTAAATTA
TTAACCATGAGCATGGCTTTAAAAGATTCAAAAGTTGGGGCAATTCCAAA
TAGATCGACAGCGATAAAAACTCCTAAGCAGCCTCTGTATAAAAGTAAAT
TTCACCCAACTGCTCAAGGGAGCAATTCTATGTCGAAATGGAAATCAAAC
AGTTTAGTTAAGTCACAAACGAACCTTTGTTCCGGTTCTAAATCTCAAAC
TGTCAGTTCACAGAAAAAACCGCTCACGGAAATCAGAAAGCAACAAGAAA
GAATTGAGGAGGATAAAAGACGAAAGCTTGAAGAAATCAAAGCCAAGCGA
AAGGAAAATTGCATGAAATTGGCTGAAATCAACGAATCTAAAAAGGTTGC
CAATTCACTTAAATCGAAAACAAATTACAGCTCGATGAAACCAGGAATTC
CAAATCAGTCAGCGACATTGCCAGCTGGCTCGTCCCTGAAGGCGGCCCAT
GCAGCAGGCCTTCCTAGCAGTTTACCTCAAAGGCCAATTATAGCAAGCAG
TCAATCACAGAAGTCCACCACCGCCACACTCCAGAGAAAACAGAATCCGA
TTGACAAATTTCCTATGTTTCCACTATCCAGCAATCAAATGGCGAATGCG
ATGAAACCGATCAATTGCAATCCCCATGGAAAGGCGAATGTAATCTCGTC
CAGTAACACGACTGGATCCCAATCATCCTGCGTCCTCCTACCGGAGTTCA
AAACTCCTTTCTCAAAAAAGCGGCTGACGATATTATCGGATTCCTGCAAA
AAGATTATCGATAGCCACGAAAGTTATGATCTCAGCGGATTGGTAGATGT
CGATTCTGACGAGGATGAAGACGAGGAGAACCAGCCGAAATCAAGAATTC
CCCGATGGTCTCGCAAGGAAAATGGAACTCTGGAAAAGCTGGTCAGATAC
CAGATGAAGCATTCCAACCCCAGTGATATAATTTTGGAAGCCCGCTATGT
GAGGATTGACTACAGCGAGGTCTTCGGAGAGGACACGACAATAGAGCCGG
GCGTTCTAGAAGCATGGCTTTGATTATTTTATGGAAATATATGTTTTGGT
GTTTGAATATTTGCCGTTTCGCTGACATTGACTCTTGTATTATTTGTTAG
TTATTAATTTTACCTTTCAGCATTGGAAACGCAAATACCAATTGCAAATT
GTGATACAAGTGCTGTATGTTACCAAATAAATGGTTATGTC
back to top

protein sequence of SMED30016224-orf-1

>SMED30016224-orf-1 ID=SMED30016224-orf-1|Name=SMED30016224-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=598bp
MTDHAISYIKCVSVPSENIKTQSKKNIEIFLKDFKKRRRNLLTKLNKNQI
STSQVIQYYNENIDLIKKIKYDRLQKIILLTQEFMENISDDEQEHITDGT
NKYSMNIEEDSVYIINNVNKIDEKPLQFLNEKIIDENQSIQIEQMEIDLV
PHEVSRNSISDVMEIIEEDEEHQKEVDFQYIKTTKIDKIQELDEQYENAS
SGMESSPEFDKTFDVKIVNRVEDNKTPFQTDSIKSLAILNQKSINEKLSS
VKMKSKLLTMSMALKDSKVGAIPNRSTAIKTPKQPLYKSKFHPTAQGSNS
MSKWKSNSLVKSQTNLCSGSKSQTVSSQKKPLTEIRKQQERIEEDKRRKL
EEIKAKRKENCMKLAEINESKKVANSLKSKTNYSSMKPGIPNQSATLPAG
SSLKAAHAAGLPSSLPQRPIIASSQSQKSTTATLQRKQNPIDKFPMFPLS
SNQMANAMKPINCNPHGKANVISSSNTTGSQSSCVLLPEFKTPFSKKRLT
ILSDSCKKIIDSHESYDLSGLVDVDSDEDEDEENQPKSRIPRWSRKENGT
LEKLVRYQMKHSNPSDIILEARYVRIDYSEVFGEDTTIEPGVLEAWL*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 331..358
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..544
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..343