RING finger protein 17

Overview
NameRING finger protein 17
Smed IDSMED30016172
Length (bp)717
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RING finger protein 17 (SMED30016172) t-SNE clustered cells

Violin plots show distribution of expression levels for RING finger protein 17 (SMED30016172) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RING finger protein 17 (SMED30016172) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RING finger protein 17 (SMED30016172) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30016172

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016172SMESG000044364.1 SmedASXL_001100SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30016172SMESG000044364.1 SmedASXL_001100SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RING finger protein 17 vs. Ensembl Human
Match: TDRD5 (tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614])

HSP 1 Score: 55.0694 bits (131), Expect = 4.354e-8
Identity = 37/137 (27.01%), Postives = 64/137 (46.72%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNY-------HSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N          +C+I  G    L  V+      W R  I +V+ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  A+
Sbjct:  477 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPG---HLCCVRISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGI-VQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPVEEHWTSKAI 608
[Close]
BLAST of RING finger protein 17 vs. Ensembl Human
Match: TDRD5 (tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614])

HSP 1 Score: 55.0694 bits (131), Expect = 4.354e-8
Identity = 37/137 (27.01%), Postives = 64/137 (46.72%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNY-------HSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N          +C+I  G    L  V+      W R  I +V+ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  A+
Sbjct:  477 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPG---HLCCVRISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGI-VQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPVEEHWTSKAI 608
[Close]
BLAST of RING finger protein 17 vs. Ensembl Human
Match: TDRD5 (tudor domain containing 5 [Source:HGNC Symbol;Acc:HGNC:20614])

HSP 1 Score: 54.6842 bits (130), Expect = 5.533e-8
Identity = 37/137 (27.01%), Postives = 64/137 (46.72%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNY-------HSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N          +C+I  G    L  V+      W R  I +V+ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  A+
Sbjct:  477 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPG---HLCCVRISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGI-VQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPVEEHWTSKAI 608
[Close]
BLAST of RING finger protein 17 vs. Ensembl Human
Match: TDRD6 (tudor domain containing 6 [Source:HGNC Symbol;Acc:HGNC:21339])

HSP 1 Score: 49.2914 bits (116), Expect = 3.514e-6
Identity = 56/210 (26.67%), Postives = 104/210 (49.52%), Query Frame = 3 
Query:   66 ISLISYRNIEHK---FY-GEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHS-KCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLM-KDYMDKELFIKCISTEITRECCRYPVVLLDKYK---ENFIITNKLVKHGYCEFEE 668
            ISL + R+I  K   FY  ++ +V +P++F++ +   K    +  L+  M  FY +       + K     L  VK     ++ R  + K+  + + DVF++D G ++ + D  D+R+L  +F    P  A+   LA + P+   WS+ AVS   K  + KEL I  +     ++  +Y + +LD+ +   EN  I+  + + GY +++E
Sbjct:  473 ISLPALRSIRLKMNAFYDAQVEFVKNPSEFWIRL--RKHNVTFSKLMRRMCGFYSSASKLDGVVLKPEPDDLCCVKWKENGYY-RAIVTKLDDKSV-DVFLVDRGNSE-NVDWYDVRMLLPQFRQL-PILAVKCTLADIWPLGKTWSQEAVSFFKKTVLHKELVIHILD----KQDHQYVIEILDESRTGEEN--ISKVIAQAGYAKYQE 670
[Close]
BLAST of RING finger protein 17 vs. Ensembl Human
Match: TDRD6 (tudor domain containing 6 [Source:HGNC Symbol;Acc:HGNC:21339])

HSP 1 Score: 49.2914 bits (116), Expect = 3.649e-6
Identity = 56/210 (26.67%), Postives = 104/210 (49.52%), Query Frame = 3 
Query:   66 ISLISYRNIEHK---FY-GEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHS-KCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLM-KDYMDKELFIKCISTEITRECCRYPVVLLDKYK---ENFIITNKLVKHGYCEFEE 668
            ISL + R+I  K   FY  ++ +V +P++F++ +   K    +  L+  M  FY +       + K     L  VK     ++ R  + K+  + + DVF++D G ++ + D  D+R+L  +F    P  A+   LA + P+   WS+ AVS   K  + KEL I  +     ++  +Y + +LD+ +   EN  I+  + + GY +++E
Sbjct:  473 ISLPALRSIRLKMNAFYDAQVEFVKNPSEFWIRL--RKHNVTFSKLMRRMCGFYSSASKLDGVVLKPEPDDLCCVKWKENGYY-RAIVTKLDDKSV-DVFLVDRGNSE-NVDWYDVRMLLPQFRQL-PILAVKCTLADIWPLGKTWSQEAVSFFKKTVLHKELVIHILD----KQDHQYVIEILDESRTGEEN--ISKVIAQAGYAKYQE 670
[Close]
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Match: si:dkeyp-93d12.1 (si:dkeyp-93d12.1 [Source:ZFIN;Acc:ZDB-GENE-041014-303])

HSP 1 Score: 55.4546 bits (132), Expect = 1.942e-8
Identity = 43/146 (29.45%), Postives = 75/146 (51.37%), Query Frame = 3 
Query:  117 SWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMK-SHWSKSAVSLMKDYMDKELFIKC 548
            S V++P+DF+   +  K   + LD L+E+MQ FY+ Y S   +         AVK+   + W R C+    +  +  + ++D G        ++I+ L+ +F +  P QA   +L F+EP+  S WS  A +L++D++ K    KC
Sbjct:  748 SHVNTPSDFWCQNVSTK---LDLDKLMEEMQLFYQTYTSGLLMP----ALCCAVKSPHDNQWHRACMIGQHNEQLL-MILVDVGLI-IQEKLQNIQTLQPQFLEL-PTQAFRCRLNFIEPIGGSSWSSEACNLLRDFLFKCTSSKC 883
[Close]
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Match: tdrkh (tudor and KH domain containing [Source:ZFIN;Acc:ZDB-GENE-050327-81])

HSP 1 Score: 50.447 bits (119), Expect = 6.661e-7
Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 3 
Query:   27 FKMAGYDYCEPDMISLISYRNIEH-KFYGEISWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYHSKCY-IDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYC--PAQAIPVKLAFVEPMKSHWSKSAV 503
             +++ ++   PD+    S++  EH + Y  +S  ++P  F++ I+  +  S+ LD L  +M +FY    S+ + ++   VG +VA        W R  +  +V   + D++ +D G    D  E     LRS  +D+   P QAI   LA V P    W+++A+
Sbjct:  306 LEISKFEIPSPDL----SFQPDEHLEVY--VSASENPQHFWIQILGVR--SLQLDKLTAEMSRFYNGDSSQEHRVETIIVGDIVAAPYRDHGTWNRARVLGIVGSGLVDLYYVDFG----DNGELPREHLRSMRSDFLSLPFQAIECSLAGVRPEGEVWTEAAL 457
[Close]
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Match: tdrkh (tudor and KH domain containing [Source:ZFIN;Acc:ZDB-GENE-050327-81])

HSP 1 Score: 50.447 bits (119), Expect = 7.506e-7
Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 3 
Query:   27 FKMAGYDYCEPDMISLISYRNIEH-KFYGEISWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYHSKCY-IDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYC--PAQAIPVKLAFVEPMKSHWSKSAV 503
             +++ ++   PD+    S++  EH + Y  +S  ++P  F++ I+  +  S+ LD L  +M +FY    S+ + ++   VG +VA        W R  +  +V   + D++ +D G    D  E     LRS  +D+   P QAI   LA V P    W+++A+
Sbjct:  306 LEISKFEIPSPDL----SFQPDEHLEVY--VSASENPQHFWIQILGVR--SLQLDKLTAEMSRFYNGDSSQEHRVETIIVGDIVAAPYRDHGTWNRARVLGIVGSGLVDLYYVDFG----DNGELPREHLRSMRSDFLSLPFQAIECSLAGVRPEGEVWTEAAL 457
[Close]
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Match: tdrkh (tudor and KH domain containing [Source:ZFIN;Acc:ZDB-GENE-050327-81])

HSP 1 Score: 50.447 bits (119), Expect = 7.506e-7
Identity = 44/164 (26.83%), Postives = 80/164 (48.78%), Query Frame = 3 
Query:   27 FKMAGYDYCEPDMISLISYRNIEH-KFYGEISWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYHSKCY-IDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYC--PAQAIPVKLAFVEPMKSHWSKSAV 503
             +++ ++   PD+    S++  EH + Y  +S  ++P  F++ I+  +  S+ LD L  +M +FY    S+ + ++   VG +VA        W R  +  +V   + D++ +D G    D  E     LRS  +D+   P QAI   LA V P    W+++A+
Sbjct:  306 LEISKFEIPSPDL----SFQPDEHLEVY--VSASENPQHFWIQILGVR--SLQLDKLTAEMSRFYNGDSSQEHRVETIIVGDIVAAPYRDHGTWNRARVLGIVGSGLVDLYYVDFG----DNGELPREHLRSMRSDFLSLPFQAIECSLAGVRPEGEVWTEAAL 457
[Close]
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Match: tdrd5 (tudor domain containing 5 [Source:NCBI gene;Acc:557999])

HSP 1 Score: 49.2914 bits (116), Expect = 1.710e-6
Identity = 46/177 (25.99%), Postives = 78/177 (44.07%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYK--NYHSKCYIDKGSV--GQLVAVKTDGKSHW-QRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLMKDYMDKELFIKCISTEITRECC-RYPVVLLDKYKENFII 626
            +   +SP+ FY+   Q K+     +++ +M+  Y   +   +  +    V  GQ+  V    +  W  R  I +V S     V+ +D G      +   +R L++ +AD  PAQA+P  LA V P+ + W  SAVS  +                 R CC R  V  +  Y+E+F++
Sbjct:  475 VEQTESPSYFYIRFSQNKEARALENMMIEMRSCYSYPDVAERYRLPDAYVRPGQVCCVAP--RDMWFYRVVIHEVFSETEVKVYYVDYGDIT-KVERHSLRFLKACYADL-PAQAVPAMLAGVRPITNIWPASAVSCFQ-----------------RLCCERTLVAGVHSYQEDFLL 630
[Close]
BLAST of RING finger protein 17 vs. Ensembl Xenopus
Match: ENSXETT00000011761.1 (ring finger protein 17 [Source:NCBI gene;Acc:100490831])

HSP 1 Score: 52.7582 bits (125), Expect = 1.970e-7
Identity = 44/156 (28.21%), Postives = 71/156 (45.51%), Query Frame = 3 
Query:   93 EHK--FYGEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLR---SKFADYCPAQAIPVKLAFVEPMKS--HWSKSAVSLMKDYMDKELF 539
            EH+  F   +S V+SP+DFY+ +    + + Y    +++Q+ Y    S   I    +GQ V +K     +W R  +     +D   +  +D G    DTD  ++  LR    +F D  P +AI  +LAF+EP  +   WS  A        D+  F
Sbjct:  390 EHRTNFTVVVSHVNSPSDFYIQV--ADNANEYATFSQEIQEVYNCEESDLKIKHAVIGQ-VCMKKFKDGYWYRAVVVGFTGQDEVTIKFVDFG----DTDTVNVSTLRDIKEEFLDM-PCKAICCRLAFIEPCNNAQRWSLEACRYFAKVADQRPF 537
[Close]
BLAST of RING finger protein 17 vs. Ensembl Xenopus
Match: ice2 (interactor of little elongation complex ELL subunit 2 [Source:Xenbase;Acc:XB-GENE-5916977])

HSP 1 Score: 49.2914 bits (116), Expect = 3.048e-6
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 3 
Query:  123 VDSPTDFYVNIIQGKDWSVYL-DLVEDMQKFYKNY-HSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            ++SP+ FYV    GKD S  L D++ +M+  Y N   S+ YI      SVGQ+ A++  G   W R  +  + + ++ DVF  D G       +  +R L++ +    PAQA+P  L +V   +  WS  A+
Sbjct:  508 IESPSQFYVRCC-GKDTSEKLEDMMIEMRHCYSNECVSERYIVTDNCISVGQIYALRVPGDVWWYRVIVHDIKNSELLDVFYPDFGNVAT-VKKSWLRFLKNCYMKI-PAQAVPSSLPYVTSTEDQWSAQAI 636
[Close]
BLAST of RING finger protein 17 vs. Ensembl Xenopus
Match: ice2 (interactor of little elongation complex ELL subunit 2 [Source:Xenbase;Acc:XB-GENE-5916977])

HSP 1 Score: 49.2914 bits (116), Expect = 3.199e-6
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 3 
Query:  123 VDSPTDFYVNIIQGKDWSVYL-DLVEDMQKFYKNY-HSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            ++SP+ FYV    GKD S  L D++ +M+  Y N   S+ YI      SVGQ+ A++  G   W R  +  + + ++ DVF  D G       +  +R L++ +    PAQA+P  L +V   +  WS  A+
Sbjct:  525 IESPSQFYVRCC-GKDTSEKLEDMMIEMRHCYSNECVSERYIVTDNCISVGQIYALRVPGDVWWYRVIVHDIKNSELLDVFYPDFGNV-ATVKKSWLRFLKNCYMKI-PAQAVPSSLPYVTSTEDQWSAQAI 653
[Close]
BLAST of RING finger protein 17 vs. Ensembl Mouse
Match: Tdrd5 (tudor domain containing 5 [Source:MGI Symbol;Acc:MGI:2684949])

HSP 1 Score: 55.8398 bits (133), Expect = 1.590e-8
Identity = 38/134 (28.36%), Postives = 62/134 (46.27%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKN-YHSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N   S  YI        G L  VK      W R  I +++ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P + HW+  A+
Sbjct:  408 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYIMPEYFIQPGHLCCVKISEDKWWYRVIIHRILGKKEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPAEEHWTARAI 539
[Close]
BLAST of RING finger protein 17 vs. Ensembl Mouse
Match: Tdrd5 (tudor domain containing 5 [Source:MGI Symbol;Acc:MGI:2684949])

HSP 1 Score: 55.8398 bits (133), Expect = 1.641e-8
Identity = 38/134 (28.36%), Postives = 62/134 (46.27%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKN-YHSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N   S  YI        G L  VK      W R  I +++ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P + HW+  A+
Sbjct:  485 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYIMPEYFIQPGHLCCVKISEDKWWYRVIIHRILGKKEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPAEEHWTARAI 616
[Close]
BLAST of RING finger protein 17 vs. Ensembl Mouse
Match: Rnf17 (ring finger protein 17 [Source:MGI Symbol;Acc:MGI:1353419])

HSP 1 Score: 49.6766 bits (117), Expect = 1.851e-6
Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 3 
Query:  123 VDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYK-----NYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPM-KSHWSKSAVSLMKDYMDKELFIKCISTEITRECCRYPVVLLDKY---KENFIITNKLVKHGYCEFEESTEMYNN 689
            ++SPTDFY+ +++  D   +L L++ +++FYK     N    C +   +    VA   DG   W R  +  +      +V  +D G T   T  +D+R ++ +F +  P +AI  KLA+VEP  KS WSK A    ++   ++ F+ C   +I        V L D     K    I ++LVK G   +E    + +N
Sbjct:  712 INSPTDFYLQLMENLD---FLSLLKTIEEFYKGEDGENLEILCPLQNQAC---VAKFEDGI--WYRAKVIGLPGHREVEVKYVDFGNTAKIT-LKDMRKIKDEFLEP-PEKAIKCKLAYVEPSKKSQWSKKAKEKFEEKT-QDKFVTCSVIKILENNVLL-VELFDSRAPGKSAVSINDQLVKEGLASYEAGYTLKDN 897
[Close]
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Match: sp|D2H3M0|TDRD5_AILME (Tudor domain-containing protein 5 OS=Ailuropoda melanoleuca OX=9646 GN=TDRD5 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 6.232e-8
Identity = 36/137 (26.28%), Postives = 65/137 (47.45%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSV-------GQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N   +   D+ ++       G L  V+      W R  I +V+ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  A+
Sbjct:  479 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSN---QLVSDRYTLPEYFIQPGHLCCVRISEDKWWYRVIIHRVLGKQEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPVEEHWTSKAI 610
[Close]
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Match: sp|Q5VCS6|TDRD5_MOUSE (Tudor domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tdrd5 PE=1 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 1.148e-7
Identity = 38/134 (28.36%), Postives = 62/134 (46.27%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKN-YHSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N   S  YI        G L  VK      W R  I +++ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P + HW+  A+
Sbjct:  485 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYIMPEYFIQPGHLCCVKISEDKWWYRVIIHRILGKKEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPAEEHWTARAI 616
[Close]
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Match: sp|E2QTD3|TDRD5_CANLF (Tudor domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=TDRD5 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.515e-7
Identity = 37/136 (27.21%), Postives = 63/136 (46.32%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKN------YHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N      Y    Y  +   G L  V+      W R  I +V+ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  A+
Sbjct:  482 VEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYAMPEYFIQP--GHLCCVRISEDKWWYRVIIHRVLGKQEVEVFYPDFGNIG-TVQKSSLRFLKWCYTKL-PAQAIPCSLAWVRPVEEHWTSRAI 613
[Close]
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Match: sp|E1BPH3|TDRD5_BOVIN (Tudor domain-containing protein 5 OS=Bos taurus OX=9913 GN=TDRD5 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.526e-7
Identity = 37/137 (27.01%), Postives = 64/137 (46.72%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNY-------HSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FY+ I       +  D++ +M++ Y N          +C+I  G    L  V+      W R  I +++ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P++ HW+  AV
Sbjct:  481 VEYILSPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYAMPECFIQPG---HLCCVRISEDKWWYRVIIHRILGKQEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPVEEHWTSRAV 612
[Close]
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Match: sp|B4F7C4|TDRD5_RAT (Tudor domain-containing protein 5 OS=Rattus norvegicus OX=10116 GN=Tdrd5 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.825e-7
Identity = 37/136 (27.21%), Postives = 62/136 (45.59%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKN------YHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            + ++ SP+ FYV I       +  D++ +M++ Y N      Y    Y  +   G L  V+      W R  I +++ +   +VF  D G       +  +R L+  +    PAQAIP  LA+V P + HW+  A+
Sbjct:  485 VEYIISPSQFYVRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPEYFIQP--GHLCCVRISEDKWWYRVIIHRILGKKEVEVFYPDFGNIG-TVQKSSLRFLKCCYTKL-PAQAIPCSLAWVRPAEEHWTSKAI 616
[Close]
BLAST of RING finger protein 17 vs. TrEMBL
Match: V3Z0B0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236389 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.515e-8
Identity = 60/191 (31.41%), Postives = 97/191 (50.79%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYL-DLVEDMQKFYKNYHSKCYIDKG---SVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVS-LMKDYMDKEL--FIKCISTEITRECCRYPVVLLDKYKENFIITNK-LVKHGYCEF 662
            +S + SP  F++ + +GK  S  L +L++D+ ++Y    SK Y+       +GQL AV     ++W RG I  + S ++ +V+ +D G T     +  +RLLRS+F    PAQAI  +LA V+P+K  W   A   L++   +K L  F+  +   +   C      L D  +E  I  N  LV+  Y +F
Sbjct:  504 VSNIVSPGLFWLQL-RGKRTSEALENLMDDLAEYYMTSDSKRYLMPEYLYMIGQLCAVIFPEDNNWHRGIITGIRSMEVIEVYFVDYGNT-CAVPKNTLRLLRSRFRK-LPAQAIQARLANVKPIKEVWCVGARDRLLQICTNKPLVGFLTAVRDRVLSLC------LTDTSQEEDIHLNDLLVEECYAKF 685
[Close]
BLAST of RING finger protein 17 vs. TrEMBL
Match: A0A452I9J9 (Tudor domain containing 5 OS=Gopherus agassizii OX=38772 GN=TDRD5 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.125e-7
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 3 
Query:  129 SPTDFYVNIIQGKDWSVYLDLVEDMQKFY--KNYHSKCYIDKGSV--GQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            SP  FY+ I   +   +  D++ +M++ Y  KN   +  + +G V  G L  V+      W R  I +V+S    +VF  D G  +    +  +RLL+  ++   PAQAIP  LA+V+P++ HW+ +A+
Sbjct:  405 SPNQFYIRICSKETSEMLEDMMIEMRRCYSNKNVSDRYVMTEGLVQPGHLCCVRISEDKWWYRVIIHRVLSEQEVEVFFPDFGNLR-TVQKSCLRLLKCCYSKL-PAQAIPCSLAWVKPIEGHWTTNAI 531
[Close]
BLAST of RING finger protein 17 vs. TrEMBL
Match: A0A452I9M1 (Tudor domain containing 5 OS=Gopherus agassizii OX=38772 GN=TDRD5 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.132e-7
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 3 
Query:  129 SPTDFYVNIIQGKDWSVYLDLVEDMQKFY--KNYHSKCYIDKGSV--GQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            SP  FY+ I   +   +  D++ +M++ Y  KN   +  + +G V  G L  V+      W R  I +V+S    +VF  D G  +    +  +RLL+  ++   PAQAIP  LA+V+P++ HW+ +A+
Sbjct:  433 SPNQFYIRICSKETSEMLEDMMIEMRRCYSNKNVSDRYVMTEGLVQPGHLCCVRISEDKWWYRVIIHRVLSEQEVEVFFPDFGNLR-TVQKSCLRLLKCCYSKL-PAQAIPCSLAWVKPIEGHWTTNAI 559
[Close]
BLAST of RING finger protein 17 vs. TrEMBL
Match: A0A131Z1I7 (Tudor domain-containing protein 5 OS=Rhipicephalus appendiculatus OX=34631 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.126e-7
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 3 
Query:  102 FYGEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCY-IDKGSV--GQLVAV--KTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSH-WSKSAVSLMKDYMDKELFIK------CISTEITRE--CCRYPVVLLDKYKENFIITNKLVKHGYCEFEEST 674
            F   I  V SP++FYV I      +   DL+ ++ +FY +  S  Y ++ G +  G + A     DG+  W R  +K V +R+++ VF ID G T       DIR LRS F ++ PAQAI   L+ V+P     W+  A         KE F++      C  + +++E   C   +++ D   E + I+  L+   Y EF  ST
Sbjct:  599 FSVAIGEVFSPSEFYVLITADGALTQLADLMAELDEFYNSASSDFYSVNIGDLKPGFVCAALYTNDGQPLWHRAVVKSVQAREVF-VFYIDYG-TVMPVKVADIRRLRSDFLEF-PAQAIKASLSGVKPKNEQAWTPKA---------KERFLQLVRMGECSCSVVSKEEDVCFVELLMSDGSME-YSISEVLI---YEEFAVST 787
[Close]
BLAST of RING finger protein 17 vs. TrEMBL
Match: A0A3B3TDU0 (Tudor and KH domain containing OS=Paramormyrops kingsleyae OX=1676925 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.754e-7
Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 3 
Query:   42 YDYCEPDMISLISYRNIEH-KFYGEISWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADY--CPAQAIPVKLAFVEPMKSHWSKSAV 503
            ++   PD+    S++  EH + Y  +S V++P  F++ I+  +  S+ LD L  +M +FY    ++  ++K  VG +VA        W R  +  V+   + DV+ +D G    D  E  +  LRS  +D+   P QAI   LA V P    W++ A+
Sbjct:  285 FEIPSPDL----SFQPDEHLEVY--VSAVENPQHFWIQILGVR--SLQLDKLTAEMGRFYSTGTAELKVEKVVVGDIVAAPYRNHGTWNRARVLSVLESGLVDVYYVDYG----DNGELSLESLRSMRSDFLSLPFQAIECSLAGVSPAGGSWTEEAL 430
[Close]
BLAST of RING finger protein 17 vs. Ensembl Nematostella
Match: EDO35117 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMF2])

HSP 1 Score: 53.9138 bits (128), Expect = 1.781e-8
Identity = 48/187 (25.67%), Postives = 80/187 (42.78%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLMKD---YMDKELFIKCISTEITRECCRYPVVLLDKYK----ENFIITNKLVKHGY 653
            +S VD+P  F+V +++G        LV D+ +      +   +    VG++          W R  + K  +    +VF +D G        R +R LR +   + P QA+   LA V+P    WSK A+ + K    Y D ++    I T+  R C   P   LD Y     ++  I  +++K G+
Sbjct:  271 VSAVDTPGHFWVQLVKGHGAQELDKLVSDLTEEASTGSADSIVQSVKVGEVYCAPFPQDESWYRAKVTKDNNDGTVEVFYVDYGDVGTVPKYR-MRKLREE-QTWLPFQAVECYLANVKPKDGEWSKEAIDVFKQLTHYPDWQV----IMTKAVRYCGATPC--LDVYNTTTDKDIYINQEMIKGGF 449
[Close]
BLAST of RING finger protein 17 vs. Ensembl Medaka
Match: tdrkh (tudor and KH domain containing [Source:NCBI gene;Acc:101170376])

HSP 1 Score: 49.6766 bits (117), Expect = 1.069e-6
Identity = 38/132 (28.79%), Postives = 67/132 (50.76%), Query Frame = 3 
Query:  114 ISWVDSPTDFYVNIIQGKDWSVYLD-LVEDMQKFYKNYH-SKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAV 503
            +S  ++P  F++ I+  +  S  LD L E+M +FY + + ++  ++   VG +VA      S W R  +  V+   + D++ +D G       +R +R +RS F    P QAI   LA V+P    W++ A+
Sbjct:  298 VSASENPNHFWIQILGVR--SFQLDKLTEEMSRFYSSANPTEQKVETVLVGDIVAAPYRDHSTWNRARVLGVLGSGLVDLYYVDFGDNAELPRDR-LRRMRSDFLSL-PFQAIECTLAGVKPKGEVWTEEAL 425
[Close]
BLAST of RING finger protein 17 vs. Ensembl Medaka
Match: ENSORLT00000034678.1 (tudor domain containing 5 [Source:NCBI gene;Acc:101166464])

HSP 1 Score: 49.6766 bits (117), Expect = 1.342e-6
Identity = 34/134 (25.37%), Postives = 66/134 (49.25%), Query Frame = 3 
Query:  123 VDSPTDFYVNIIQGKDWSVYLDLVEDMQKFY--KNYHSKCYIDKGSVGQLVAVKTDGKSHW-QRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLMK 515
            V+SP  FY+  I+ K+     D++ +M+++Y   +   +  +    + Q  A     KS W  R  I +V++    +V+ +D G T        ++ L+S ++   PAQA+P  L+ ++P+   W+  A+   K
Sbjct:  482 VESPGLFYIRFIESKETRALEDMMIEMRRYYMCPDVSKRYRLLAPFIRQGQACCALTKSSWFYRVVINRVINPTQVEVYFVDFGNTMV-VQNTSLKFLKSIYS-VLPAQAVPASLSGIKPISGTWTCKAIDSFK 613
[Close]
BLAST of RING finger protein 17 vs. Ensembl Medaka
Match: ENSORLT00000045120.1 (tudor domain containing 5 [Source:NCBI gene;Acc:101166464])

HSP 1 Score: 49.2914 bits (116), Expect = 1.529e-6
Identity = 34/134 (25.37%), Postives = 66/134 (49.25%), Query Frame = 3 
Query:  123 VDSPTDFYVNIIQGKDWSVYLDLVEDMQKFY--KNYHSKCYIDKGSVGQLVAVKTDGKSHW-QRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLMK 515
            V+SP  FY+  I+ K+     D++ +M+++Y   +   +  +    + Q  A     KS W  R  I +V++    +V+ +D G T        ++ L+S ++   PAQA+P  L+ ++P+   W+  A+   K
Sbjct:  482 VESPGLFYIRFIESKETRALEDMMIEMRRYYMCPDVSKRYRLLAPFIRQGQACCALTKSSWFYRVVINRVINPTQVEVYFVDFGNTMV-VQNTSLKFLKSIYS-VLPAQAVPASLSGIKPISGTWTCKAIDSFK 613
[Close]
BLAST of RING finger protein 17 vs. Planmine SMEST
Match: SMESG000044364.1 (SMESG000044364.1)

HSP 1 Score: 453.751 bits (1166), Expect = 1.373e-164
Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 3 
Query:   33 MAGYDYCEPDMISLISYRNIEHKFYGEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKSHWSKSAVSLMKDYMDKELFIKCISTEITRECCRYPVVLLDKYKENFIITNKLVKHGYCEFEESTEMYNN 689
            MAGYDYCEPDMISLISYRNIEHKFYGEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMK HWSKSAVSLMKDYMDKELFIKCISTEITRECCRYPVVLLDKYKENFIITNKLVKHGYCEFEESTEMYNN
Sbjct:    1 MAGYDYCEPDMISLISYRNIEHKFYGEISWVDSPTDFYVNIIQGKDWSVYLDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSRDIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKGHWSKSAVSLMKDYMDKELFIKCISTEITRECCRYPVVLLDKYKENFIITNKLVKHGYCEFEESTEMYNN 219
The following BLAST results are available for this feature:
BLAST of RING finger protein 17 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
TDRD54.354e-827.01tudor domain containing 5 [Source:HGNC Symbol;Acc:... [more]
TDRD54.354e-827.01tudor domain containing 5 [Source:HGNC Symbol;Acc:... [more]
TDRD55.533e-827.01tudor domain containing 5 [Source:HGNC Symbol;Acc:... [more]
TDRD63.514e-626.67tudor domain containing 6 [Source:HGNC Symbol;Acc:... [more]
TDRD63.649e-626.67tudor domain containing 6 [Source:HGNC Symbol;Acc:... [more]
back to top
BLAST of RING finger protein 17 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RING finger protein 17 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RING finger protein 17 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
si:dkeyp-93d12.11.942e-829.45si:dkeyp-93d12.1 [Source:ZFIN;Acc:ZDB-GENE-041014-... [more]
tdrkh6.661e-726.83tudor and KH domain containing [Source:ZFIN;Acc:ZD... [more]
tdrkh7.506e-726.83tudor and KH domain containing [Source:ZFIN;Acc:ZD... [more]
tdrkh7.506e-726.83tudor and KH domain containing [Source:ZFIN;Acc:ZD... [more]
tdrd51.710e-625.99tudor domain containing 5 [Source:NCBI gene;Acc:55... [more]
back to top
BLAST of RING finger protein 17 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSXETT00000011761.11.970e-728.21ring finger protein 17 [Source:NCBI gene;Acc:10049... [more]
ice23.048e-631.82interactor of little elongation complex ELL subuni... [more]
ice23.199e-631.82interactor of little elongation complex ELL subuni... [more]
back to top
BLAST of RING finger protein 17 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Tdrd51.590e-828.36tudor domain containing 5 [Source:MGI Symbol;Acc:M... [more]
Tdrd51.641e-828.36tudor domain containing 5 [Source:MGI Symbol;Acc:M... [more]
Rnf171.851e-628.79ring finger protein 17 [Source:MGI Symbol;Acc:MGI:... [more]
back to top
BLAST of RING finger protein 17 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|D2H3M0|TDRD5_AILME6.232e-826.28Tudor domain-containing protein 5 OS=Ailuropoda me... [more]
sp|Q5VCS6|TDRD5_MOUSE1.148e-728.36Tudor domain-containing protein 5 OS=Mus musculus ... [more]
sp|E2QTD3|TDRD5_CANLF1.515e-727.21Tudor domain-containing protein 5 OS=Canis lupus f... [more]
sp|E1BPH3|TDRD5_BOVIN1.526e-727.01Tudor domain-containing protein 5 OS=Bos taurus OX... [more]
sp|B4F7C4|TDRD5_RAT1.825e-727.21Tudor domain-containing protein 5 OS=Rattus norveg... [more]
back to top
BLAST of RING finger protein 17 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V3Z0B02.515e-831.41Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A452I9J91.125e-731.01Tudor domain containing 5 OS=Gopherus agassizii OX... [more]
A0A452I9M11.132e-731.01Tudor domain containing 5 OS=Gopherus agassizii OX... [more]
A0A131Z1I73.126e-730.73Tudor domain-containing protein 5 OS=Rhipicephalus... [more]
A0A3B3TDU03.754e-729.11Tudor and KH domain containing OS=Paramormyrops ki... [more]
back to top
BLAST of RING finger protein 17 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RING finger protein 17 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RING finger protein 17 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of RING finger protein 17 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO351171.781e-825.67Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of RING finger protein 17 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
tdrkh1.069e-628.79tudor and KH domain containing [Source:NCBI gene;A... [more]
ENSORLT00000034678.11.342e-625.37tudor domain containing 5 [Source:NCBI gene;Acc:10... [more]
ENSORLT00000045120.11.529e-625.37tudor domain containing 5 [Source:NCBI gene;Acc:10... [more]
back to top
BLAST of RING finger protein 17 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000044364.11.373e-16499.54SMESG000044364.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016172 ID=SMED30016172|Name=RING finger protein 17|organism=Schmidtea mediterranea sexual|type=transcript|length=717bp
TTTGATTATTCAAATTATTTTTTTATTTCAAAATGGCAGGTTATGATTAC
TGTGAACCTGATATGATTAGTCTAATAAGTTATCGTAATATTGAACACAA
ATTTTACGGTGAAATATCGTGGGTAGATTCGCCAACGGATTTTTATGTTA
ATATTATACAAGGAAAAGATTGGAGTGTTTATCTTGACCTAGTTGAAGAC
ATGCAGAAATTCTATAAAAATTATCATTCCAAATGTTATATTGATAAAGG
TTCTGTTGGGCAGTTAGTTGCAGTAAAAACAGATGGCAAATCTCACTGGC
AAAGAGGGTGTATTAAAAAAGTGGTTTCAAGAGATATATATGATGTATTT
ATGATTGATTCTGGTTATACACAATATGATACCGATGAAAGAGATATACG
TTTATTAAGGTCAAAATTTGCTGATTACTGCCCAGCTCAAGCAATACCGG
TTAAATTGGCATTTGTTGAACCTATGAAGAGCCATTGGTCTAAGAGTGCT
GTTTCTTTAATGAAGGATTACATGGACAAGGAATTATTTATAAAGTGTAT
ATCAACTGAGATAACCAGGGAGTGTTGTAGGTACCCGGTTGTCCTTTTGG
ACAAATATAAGGAGAATTTCATCATCACCAATAAACTGGTGAAGCATGGC
TACTGCGAATTCGAGGAATCAACTGAAATGTATAATAATTAAATATATAT
ATATCTTTGTTTAAAAA
back to top

protein sequence of SMED30016172-orf-1

>SMED30016172-orf-1 ID=SMED30016172-orf-1|Name=SMED30016172-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=220bp
MAGYDYCEPDMISLISYRNIEHKFYGEISWVDSPTDFYVNIIQGKDWSVY
LDLVEDMQKFYKNYHSKCYIDKGSVGQLVAVKTDGKSHWQRGCIKKVVSR
DIYDVFMIDSGYTQYDTDERDIRLLRSKFADYCPAQAIPVKLAFVEPMKS
HWSKSAVSLMKDYMDKELFIKCISTEITRECCRYPVVLLDKYKENFIITN
KLVKHGYCEFEESTEMYNN*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR035437SNase_OB-fold_sf
IPR002999Tudor
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: biological process
TermDefinition
GO:0007275multicellular organism development
GO:0007283spermatogenesis
GO:0030154cell differentiation
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.30.30.140coord: 56..128
e-value: 9.9E-27
score: 95.9
NoneNo IPR availablePANTHERPTHR22948TUDOR DOMAIN CONTAINING PROTEINcoord: 31..202
NoneNo IPR availableCDDcd04508TUDORcoord: 76..114
e-value: 0.00356177
score: 32.57
NoneNo IPR availableSUPERFAMILYSSF63748Tudor/PWWP/MBTcoord: 48..145
IPR035437SNase-like, OB-fold superfamilyGENE3DG3DSA:2.40.50.90coord: 28..207
e-value: 9.9E-27
score: 95.9
IPR002999Tudor domainPFAMPF00567TUDORcoord: 24..143
e-value: 6.9E-16
score: 58.4