High mobility group protein

Overview
NameHigh mobility group protein
Smed IDSMED30016158
Length (bp)903
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of High mobility group protein (SMED30016158) t-SNE clustered cells

Violin plots show distribution of expression levels for High mobility group protein (SMED30016158) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of High mobility group protein (SMED30016158) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for High mobility group protein (SMED30016158) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016158

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016158h1SMcG0022050 SmedASXL_001440SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
muscle cellSMED30016158h1SMcG0022050 dd_Smed_v4_4873_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of High mobility group protein vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983])

HSP 1 Score: 153.68 bits (387), Expect = 4.500e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983])

HSP 1 Score: 153.68 bits (387), Expect = 4.500e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983])

HSP 1 Score: 153.68 bits (387), Expect = 4.500e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983])

HSP 1 Score: 153.68 bits (387), Expect = 4.500e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Human
Match: HMGB1 (high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983])

HSP 1 Score: 149.828 bits (377), Expect = 2.209e-44
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA 520
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 137

HSP 2 Score: 51.9878 bits (123), Expect = 1.041e-7
Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  380 DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRV--GDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEY 589
            DP +P+  +S++  + Q  R + K +HPD  V   + +K+  +RW+T +  +KGK+E++A+ +K R+EREM  Y
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
[Close]
BLAST of High mobility group protein vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390])

HSP 1 Score: 126.716 bits (317), Expect = 5.407e-35
Identity = 70/169 (41.42%), Postives = 107/169 (63.31%), Query Frame = 2 
Query:  101 STNKDFNRP--KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            +T +D  +P  +G  S Y  FV++  E++K K+P+E V  +E SKKC+EKW+ +   EK++F ++A  D  RY  E+  Y     ++  KR + +DP  PKR LSAFF YSQ+ R +I+  HPDW+VG +A+ELGK W+    + K  YE+ A+ +K+R+  EM  YK+
Sbjct:   35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAK-KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKA 202
[Close]
BLAST of High mobility group protein vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390])

HSP 1 Score: 126.716 bits (317), Expect = 5.407e-35
Identity = 70/169 (41.42%), Postives = 107/169 (63.31%), Query Frame = 2 
Query:  101 STNKDFNRP--KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            +T +D  +P  +G  S Y  FV++  E++K K+P+E V  +E SKKC+EKW+ +   EK++F ++A  D  RY  E+  Y     ++  KR + +DP  PKR LSAFF YSQ+ R +I+  HPDW+VG +A+ELGK W+    + K  YE+ A+ +K+R+  EM  YK+
Sbjct:   35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAK-KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKA 202
[Close]
BLAST of High mobility group protein vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390])

HSP 1 Score: 125.176 bits (313), Expect = 2.742e-34
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 2 
Query:  101 STNKDFNRP--KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPR-DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            +T +D  +P  +G  S Y  FV++  E++K K+P+E V  +E SKKC+EKW+ +   EK++F ++A  D  RY  E++     G     KRK+ + DP  PKR LSAFF YSQ+ R +I+  HPDW+VG +A+ELGK W+    + K  YE+ A+ +K+R+  EM  YK+
Sbjct:   34 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKA 203
[Close]
BLAST of High mobility group protein vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390])

HSP 1 Score: 125.176 bits (313), Expect = 2.903e-34
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 2 
Query:  101 STNKDFNRP--KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPR-DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            +T +D  +P  +G  S Y  FV++  E++K K+P+E V  +E SKKC+EKW+ +   EK++F ++A  D  RY  E++     G     KRK+ + DP  PKR LSAFF YSQ+ R +I+  HPDW+VG +A+ELGK W+    + K  YE+ A+ +K+R+  EM  YK+
Sbjct:   35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKA 204
[Close]
BLAST of High mobility group protein vs. Ensembl Celegans
Match: hmg-1.2 (High mobility group protein 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q09390])

HSP 1 Score: 125.176 bits (313), Expect = 2.903e-34
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 2 
Query:  101 STNKDFNRP--KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPR-DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            +T +D  +P  +G  S Y  FV++  E++K K+P+E V  +E SKKC+EKW+ +   EK++F ++A  D  RY  E++     G     KRK+ + DP  PKR LSAFF YSQ+ R +I+  HPDW+VG +A+ELGK W+    + K  YE+ A+ +K+R+  EM  YK+
Sbjct:   35 ATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKA 204
[Close]
BLAST of High mobility group protein vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089259)

HSP 1 Score: 172.17 bits (435), Expect = 1.083e-50
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  154 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 333

HSP 2 Score: 51.9878 bits (123), Expect = 3.113e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  258 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 336
[Close]
BLAST of High mobility group protein vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089260)

HSP 1 Score: 172.17 bits (435), Expect = 1.083e-50
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  154 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 333

HSP 2 Score: 51.9878 bits (123), Expect = 3.113e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  258 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 336
[Close]
BLAST of High mobility group protein vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089261)

HSP 1 Score: 172.17 bits (435), Expect = 1.083e-50
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  154 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 333

HSP 2 Score: 51.9878 bits (123), Expect = 3.113e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  258 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 336
[Close]
BLAST of High mobility group protein vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0089262)

HSP 1 Score: 172.17 bits (435), Expect = 1.108e-50
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  155 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 334

HSP 2 Score: 51.9878 bits (123), Expect = 3.119e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  259 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 337
[Close]
BLAST of High mobility group protein vs. Ensembl Fly
Match: Dsp1 (gene:FBgn0278608 transcript:FBtr0339766)

HSP 1 Score: 172.17 bits (435), Expect = 1.108e-50
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  155 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 334

HSP 2 Score: 51.9878 bits (123), Expect = 3.119e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  259 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 337
[Close]
BLAST of High mobility group protein vs. Ensembl Zebrafish
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122])

HSP 1 Score: 158.688 bits (400), Expect = 2.767e-47
Identity = 79/164 (48.17%), Postives = 113/164 (68.90%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRW--ETCADKGKYEELARREKERFEREMDEYKSG 598
            D N+PKG  SAYA FVQ  R+++K K PD  V FSEFSKKC+E+W+ L   +K +FEDMA  DK RY +EM  YVPP GV    RK+ +DP  PKR  SAFF++  E+R  +K EHP+  +G+IAK+LG+ W  ++  D+  +E+ A + +E++E+E+  Y++G
Sbjct:    5 DVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDREMKTYVPPKGVGKTGRKK-KDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAYRAG 167
[Close]
BLAST of High mobility group protein vs. Ensembl Zebrafish
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122])

HSP 1 Score: 158.688 bits (400), Expect = 2.767e-47
Identity = 79/164 (48.17%), Postives = 113/164 (68.90%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRW--ETCADKGKYEELARREKERFEREMDEYKSG 598
            D N+PKG  SAYA FVQ  R+++K K PD  V FSEFSKKC+E+W+ L   +K +FEDMA  DK RY +EM  YVPP GV    RK+ +DP  PKR  SAFF++  E+R  +K EHP+  +G+IAK+LG+ W  ++  D+  +E+ A + +E++E+E+  Y++G
Sbjct:    5 DVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDREMKTYVPPKGVGKTGRKK-KDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAYRAG 167
[Close]
BLAST of High mobility group protein vs. Ensembl Zebrafish
Match: hmgb1a (high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341])

HSP 1 Score: 149.828 bits (377), Expect = 6.720e-44
Identity = 80/165 (48.48%), Postives = 115/165 (69.70%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKS 595
             KD  +P+G MS+YA FVQ  RE++K KHP+  V FSEFSKKC+E+W+ +  KEK +FEDMA +DKARY +EM  Y+PP G    K+K+ +DP  PKR  SAFF++  EFR ++K+E P   +GD+AK LG+ W   +  +K  YE+ A + KE++E+++  Y+S
Sbjct:    2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKG---EKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRS 163
[Close]
BLAST of High mobility group protein vs. Ensembl Zebrafish
Match: hmgb1a (high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341])

HSP 1 Score: 149.828 bits (377), Expect = 6.720e-44
Identity = 80/165 (48.48%), Postives = 115/165 (69.70%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKS 595
             KD  +P+G MS+YA FVQ  RE++K KHP+  V FSEFSKKC+E+W+ +  KEK +FEDMA +DKARY +EM  Y+PP G    K+K+ +DP  PKR  SAFF++  EFR ++K+E P   +GD+AK LG+ W   +  +K  YE+ A + KE++E+++  Y+S
Sbjct:    2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKG---EKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRS 163
[Close]
BLAST of High mobility group protein vs. Ensembl Zebrafish
Match: hmgb1a (high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341])

HSP 1 Score: 149.828 bits (377), Expect = 6.720e-44
Identity = 80/165 (48.48%), Postives = 115/165 (69.70%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKS 595
             KD  +P+G MS+YA FVQ  RE++K KHP+  V FSEFSKKC+E+W+ +  KEK +FEDMA +DKARY +EM  Y+PP G    K+K+ +DP  PKR  SAFF++  EFR ++K+E P   +GD+AK LG+ W   +  +K  YE+ A + KE++E+++  Y+S
Sbjct:    2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYEREMKNYIPPKG---EKKKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDIAAYRS 163
[Close]
BLAST of High mobility group protein vs. Ensembl Xenopus
Match: cep170b (centrosomal protein 170B [Source:Xenbase;Acc:XB-GENE-5943417])

HSP 1 Score: 159.844 bits (403), Expect = 1.271e-47
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V F+EFSKKC+E+W+ +  KEK +FEDMA  DK RY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  EFR +IK EHP   +GDIAK+LG+ W   A  DK  YE  A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMAKADKVRYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGSTIGDIAKKLGEMWNNTATDDKLPYERKAAKLKEKYEKDVAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Xenopus
Match: hmgb2 (high mobility group box 2 [Source:NCBI gene;Acc:394499])

HSP 1 Score: 151.369 bits (381), Expect = 2.396e-44
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRW--ETCADKGKYEELARREKERFEREMDEYKS 595
            D N+P+G MS+YA FVQ  RE++K KHPD +V F+EFSKKC+E+W+ +  KEK +FE+MA  DK RY +EM  Y+PP G    K K+ +DP  PKR  SAFFL+  E R QIK E P   +GD AK+LG+ W  +T  DK  YE+ A + KE++E+++  YK+
Sbjct:    5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEEMAKNDKVRYEREMKTYIPPKGE--KKGKKKKDPNAPKRPPSAFFLFCSEHRPQIKSESPGLSIGDTAKKLGEMWSEQTPKDKLPYEQKAAKLKEKYEKDVAAYKA 165
[Close]
BLAST of High mobility group protein vs. Ensembl Xenopus
Match: hmgb3 (high mobility group box 3 [Source:NCBI gene;Acc:448228])

HSP 1 Score: 127.872 bits (320), Expect = 2.175e-35
Identity = 70/155 (45.16%), Postives = 101/155 (65.16%), Query Frame = 2 
Query:  137 MSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKS 595
            MSAYA FVQ  RE++K K+P+  V F+EFSKKC+E+W+ +  KEK +F+D+A  DK RY +EM ++ P       K K+ +DP  PKR  S FFL+  EFR +IK  +P   +GD+AK+LG+ W    D  K  Y   A + KE++E+++ +YKS
Sbjct:   13 MSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDREMKDFGP-----VKKGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEKDVADYKS 162
[Close]
BLAST of High mobility group protein vs. Ensembl Xenopus
Match: hmgb3 (high mobility group box 3 [Source:NCBI gene;Acc:448228])

HSP 1 Score: 121.709 bits (304), Expect = 3.174e-33
Identity = 67/148 (45.27%), Postives = 95/148 (64.19%), Query Frame = 2 
Query:  137 MSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFER 574
            MSAYA FVQ  RE++K K+P+  V F+EFSKKC+E+W+ +  KEK +F+D+A  DK RY +EM ++ P       K K+ +DP  PKR  S FFL+  EFR +IK  +P   +GD+AK+LG+ W    D  K  Y   A + KE++E+
Sbjct:   13 MSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWKTMSAKEKSKFDDLAKADKVRYDREMKDFGPVK-----KGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDGEKQPYNNKAAKLKEKYEK 155
[Close]
BLAST of High mobility group protein vs. Ensembl Xenopus
Match: mettl5 (methyltransferase like 5 [Source:Xenbase;Acc:XB-GENE-985451])

HSP 1 Score: 52.7582 bits (125), Expect = 2.167e-7
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:  119 NRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            N PK  ++ Y  F+   RE+ + +HPD  + F E +K    +W  L P EK+++ D A  DK +Y+KE+ EY
Sbjct:   66 NGPKAPVTGYVRFLNERREQIRAQHPD--LPFPEITKMLGAEWSTLPPHEKQRYLDEAERDKQQYMKELREY 135
[Close]
BLAST of High mobility group protein vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113])

HSP 1 Score: 153.68 bits (387), Expect = 2.341e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:   19 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 178
[Close]
BLAST of High mobility group protein vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113])

HSP 1 Score: 153.68 bits (387), Expect = 3.089e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113])

HSP 1 Score: 153.68 bits (387), Expect = 3.089e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113])

HSP 1 Score: 153.68 bits (387), Expect = 3.089e-45
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Mouse
Match: Hmgb1 (high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113])

HSP 1 Score: 149.828 bits (377), Expect = 2.351e-44
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA 520
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 137

HSP 2 Score: 51.9878 bits (123), Expect = 1.035e-7
Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  380 DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRV--GDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEY 589
            DP +P+  +S++  + Q  R + K +HPD  V   + +K+  +RW+T +  +KGK+E++A+ +K R+EREM  Y
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
[Close]
BLAST of High mobility group protein vs. UniProt/SwissProt
Match: sp|Q24537|HMG2_DROME (High mobility group protein DSP1 OS=Drosophila melanogaster OX=7227 GN=Dsp1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.290e-49
Identity = 91/180 (50.56%), Postives = 122/180 (67.78%), Query Frame = 2 
Query:   74 NNVKA*T*MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV---KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEYKSG 598
            N + + + MS  K   +P+G M+AYA FVQ  RE++K KHPDE V+F+EFS+KCAE+W+ +  KEKK+F +MA  DK RY  EM  YVPP G    +  KRKQ +DP  PKR LSAFF +  + R ++K  +P++ VGDIAKELG++W       K KYE +A R+K R+EREM EYK+ 
Sbjct:  162 NVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTS 341

HSP 2 Score: 51.9878 bits (123), Expect = 3.056e-6
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV 352
            KD N PK ++SA+  F    R K K  +P+  V   + +K+   KW  + P+ K+++E MA  DKARY +EM EY   G +
Sbjct:  266 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGV--GDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKI 344
[Close]
BLAST of High mobility group protein vs. UniProt/SwissProt
Match: sp|P07746|HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss OX=8022 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.596e-47
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKSGTFVP 610
            KD  +P+G MS+YA FVQ  RE++K KHP+ +V FSEFSKKC+E+W+ +  KEK +FED+A +DK RY +EM  Y+PP G    K+K+ +DP  PKR  SAFF++  +FR Q+K E P   +GD+AK+LG++W   T  DK  YE+ A R KE++E+++  Y++   VP
Sbjct:    3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKG---EKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVP 168
[Close]
BLAST of High mobility group protein vs. UniProt/SwissProt
Match: sp|Q9YH06|HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus OX=9031 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.138e-44
Identity = 84/163 (51.53%), Postives = 113/163 (69.33%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DK RY KEM  YVPP G     +K+ +DP  PKR  SAFFL+  EFR +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYEKEMKNYVPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. UniProt/SwissProt
Match: sp|P63159|HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus OX=10116 GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.161e-44
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. UniProt/SwissProt
Match: sp|B1MTB0|HMGB1_PLEMO (High mobility group protein B1 OS=Plecturocebus moloch OX=9523 GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.161e-44
Identity = 82/163 (50.31%), Postives = 114/163 (69.94%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            D  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FEDMA  DKARY +EM  Y+PP G     +K+ +DP  PKR  SAFFL+  E+R +IK EHP   +GD+AK+LG+ W   A  DK  YE+ A + KE++E+++  Y++
Sbjct:    5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
[Close]
BLAST of High mobility group protein vs. TrEMBL
Match: A0A0R3UE70 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS5262 PE=4 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.456e-70
Identity = 110/174 (63.22%), Postives = 143/174 (82.18%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV-KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDK 628
            KD NRPKG MSAYACFVQVIRE++K KHP E +VFS+FS+KCAE+W+ + PKEKK+FEDMAA+DK RY +EM +YVPP G+ K  KRK  +DP+ PKR LSAFF +  EFRG+I+DEHPDW+VGDIAKELG+RWE C +K KY+ LA+++K+R+E +M++Y+ G +VP  K+ K
Sbjct:    6 KDKNRPKGPMSAYACFVQVIREEHKKKHPGEHIVFSDFSRKCAERWKIMTPKEKKRFEDMAALDKERYNREMVDYVPPDGMKKGKKRKAAKDPSVPKRALSAFFFFCDEFRGKIRDEHPDWKVGDIAKELGRRWEECTEKAKYDTLAQQDKQRYEEDMNKYRQGVYVPSKKQTK 179
[Close]
BLAST of High mobility group protein vs. TrEMBL
Match: A0A068YKT4 (High mobility group protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001049000 PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.061e-69
Identity = 113/185 (61.08%), Postives = 147/185 (79.46%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV-KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIGD 661
            KD NRPKGAMSAYACFVQVIRE++K KHP E +VFS+FS+KCAE+W+ + PKEKK+FEDMAA+DK RY +EM +YVPP GV K  KRK  +DP+ PKR LSAFF +  EFR QI+DEHP+W+VGDIAKELG+RWE C +K KY+ LA+++K+R+E +M++Y+ G +VP  K+ K     N T+ +
Sbjct:    6 KDKNRPKGAMSAYACFVQVIREEHKKKHPGEHIVFSDFSRKCAERWKIMTPKEKKRFEDMAALDKERYNREMVDYVPPEGVKKAKKRKAAKDPSVPKRALSAFFFFCDEFRQQIRDEHPEWKVGDIAKELGRRWEECTEKAKYDTLAQQDKQRYEEDMNKYRQGIYVPLKKQSKA---DNSTVSN 187
[Close]
BLAST of High mobility group protein vs. TrEMBL
Match: A0A1I8IJA4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030660g2 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.629e-69
Identity = 109/167 (65.27%), Postives = 137/167 (82.04%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVP 610
            KD  RPKG MSAYACFVQVIRE++K KHP+E+VVF+EFSKKCAEKW+ + PKEKK+FEDMA+ DK RY +EM++YVP  G K  KRK+P+DP  PKR L+AFFL+S E R +I+DEHPDWRV ++AKELG+ WE C D+ KYE  A R+K+R+E EM++Y+ GTFVP
Sbjct:    3 KDKMRPKGPMSAYACFVQVIREEHKKKHPEESVVFAEFSKKCAEKWKTMNPKEKKRFEDMASRDKERYNREMDDYVPADGSKGKKRKKPKDPNMPKRALTAFFLFSDEHRQKIRDEHPDWRVSEVAKELGRMWEACTDRPKYEAAAVRDKQRYEDEMNQYRQGTFVP 169
[Close]
BLAST of High mobility group protein vs. TrEMBL
Match: A0A3S5AFA8 (Uncharacterized protein (Fragment) OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS12449 PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.533e-68
Identity = 110/168 (65.48%), Postives = 140/168 (83.33%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV-KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVP 610
            KD N+PKGAM+AYACFVQVIRE++K KHP E +VFS+FSKKCAE+W+ + PKEKK+FEDMAA+DK RY +EMN+YVPP GV K  KRK  RDP QPKR  SAFF +  EFR +IK+EHP+W+V DIAKELG+RWE C +K KYE LA+++K+R+E +M +Y++GT+VP
Sbjct:   29 KDRNKPKGAMTAYACFVQVIREEHKKKHPGEQIVFSDFSKKCAERWKVMSPKEKKRFEDMAALDKERYNREMNDYVPPDGVKKAKKRKAARDPRQPKRAWSAFFFFCDEFRAKIKEEHPEWKVADIAKELGRRWEECQEKPKYETLAQQDKQRYEEDMLKYRAGTYVP 196
[Close]
BLAST of High mobility group protein vs. TrEMBL
Match: W6UD12 (High mobility group protein DSP1 OS=Echinococcus granulosus OX=6210 GN=EGR_06457 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.648e-68
Identity = 113/190 (59.47%), Postives = 147/190 (77.37%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGV-KPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFE-----REMDEYKSGTFVPYCKKDKIMRDGNETIGD 661
            KD NRPKGAMSAYACFVQVIRE++K KHP E +VFS+FS+KCAE+W+ + PKEKK+FEDMAA+DK RY +EM +YVPP GV K  KRK  +DP+ PKR LSAFF +  EFR QI+DEHP+W+VGDIAKELG+RWE C +K KY+ LA+++K+R+E      +M++Y+ G +VP  K+ K     N T+ +
Sbjct:    6 KDKNRPKGAMSAYACFVQVIREEHKKKHPGEHIVFSDFSRKCAERWKIMTPKEKKRFEDMAALDKERYNREMVDYVPPEGVKKAKKRKAAKDPSVPKRALSAFFFFCDEFRQQIRDEHPEWKVGDIAKELGRRWEECTEKAKYDTLAQQDKQRYEEACLYSDMNKYRQGIYVPLKKQSKA---DNSTVSN 192
[Close]
BLAST of High mobility group protein vs. Ensembl Cavefish
Match: ENSAMXT00000044228.1 (high mobility group protein B2-like [Source:NCBI gene;Acc:103034313])

HSP 1 Score: 152.525 bits (384), Expect = 5.764e-45
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKSGTFV 607
            KD N+PKG  SAYA FV   R++ K K P  +V F +FSKKC+E W+ L P EKK+FED+A  DKARY +EM  YVPP G+    RK+ +DP  PKR  SAFF++  E R  +K EHP+  +G+IAK+LG++W   +  D+  +++ A   +E++E+E+  Y+SG  V
Sbjct:    3 KDANKPKGRTSAYAFFVLSSRDELKKKSPGTSVNFGKFSKKCSEDWKALTPSEKKKFEDLAKADKARYDEEMKSYVPPKGMGKMGRKK-KDPNAPKRPPSAFFIFCSEHRPAVKSEHPNLTIGEIAKKLGEKWSKLSTKDRSPFDQKAVLLREKYEKEVAAYRSGGSV 169
[Close]
BLAST of High mobility group protein vs. Ensembl Cavefish
Match: hmgb2a (high mobility group box 2 [Source:NCBI gene;Acc:111195933])

HSP 1 Score: 151.754 bits (382), Expect = 1.375e-44
Identity = 79/165 (47.88%), Postives = 114/165 (69.09%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRW--ETCADKGKYEELARREKERFEREMDEYKS 595
             KD N+P+G  S+YA FVQ  RE++K KHP  +V F+EFSKKCAE+W+ + PKEK +FED+A  DK RY +EM  Y+PP G    K K+ +DP  PKR  SAFF++  + R ++K EHP   +GDIAK+LG+ W  ++  DK  YE+ A + KE++E+++  Y++
Sbjct:    2 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFAEFSKKCAERWKTMSPKEKTKFEDLAKNDKVRYDREMKTYIPPKGA--KKGKKKKDPNAPKRPPSAFFVFCSDHRPKVKSEHPGISIGDIAKKLGEMWSKQSPKDKAPYEQKAMKLKEKYEKDVAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Cavefish
Match: hmgb1a (high mobility group-T protein-like [Source:NCBI gene;Acc:103039534])

HSP 1 Score: 150.984 bits (380), Expect = 2.017e-44
Identity = 81/168 (48.21%), Postives = 118/168 (70.24%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKSGTFV 607
            KD  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ +  KEK +FE+MA +DKARY +EM  YVPP G    K+K+ +DP  PKR  SAFF++  E+R ++K+E P   +GD+AK+LG+ W   +  +K  YE+ A + KE++E+++  Y+ G  V
Sbjct:    3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKTMSAKEKGKFEEMARLDKARYEREMKNYVPPRG---EKKKRFKDPNAPKRPPSAFFIFCAEYRPKVKEETPGLSIGDVAKKLGEMWNKTSAEEKQPYEKKAAKLKEKYEKDIAAYRKGKVV 167
[Close]
BLAST of High mobility group protein vs. Ensembl Cavefish
Match: hmgb1b (high mobility group protein B1-like [Source:NCBI gene;Acc:103041093])

HSP 1 Score: 145.976 bits (367), Expect = 1.364e-42
Identity = 71/137 (51.82%), Postives = 99/137 (72.26%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA 520
            KD  +P+G MS+YA FVQ  RE++K KHP+ +V FSEFSKKC+E+W+ + PKEK +FEDMA  DK RY +EM  Y+PP G    K+K+ +DP  PKR  SAFF++  ++R +IK E+P   +GDIAK+LG+ W + +
Sbjct:    3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSPKEKSKFEDMAKQDKVRYEREMKNYIPPKG---EKKKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLSIGDIAKKLGEMWNSSS 136
[Close]
BLAST of High mobility group protein vs. Ensembl Cavefish
Match: hmgb3a (high mobility group protein B3 [Source:NCBI gene;Acc:103036962])

HSP 1 Score: 126.331 bits (316), Expect = 6.419e-35
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGK--YEELARREKERFEREMDEYKS 595
            D  +PKG MSAYA FVQ  RE++K K P+  V F+EFSKKC+ +W+ +  KEK +FEDMA  DK RY +EM  Y         KR + +DP  PKR  S FF++  + R +IK ++P   +G++AK+LG+ W    D  K  Y   + + K+++++++ +YKS
Sbjct:    5 DPRKPKGKMSAYAYFVQTCREEHKLKSPEIPVNFAEFSKKCSVRWKAMSGKEKTRFEDMAKQDKVRYDQEMMHYT-------GKRGKKKDPNAPKRPPSGFFIFCSDHRPKIKAQYPHMGIGEVAKKLGEMWNNLTDAHKQPYVMKSNKLKDKYQQDIADYKS 160
[Close]
BLAST of High mobility group protein vs. Ensembl Sea Lamprey
Match: hmgb2b (high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122])

HSP 1 Score: 144.821 bits (364), Expect = 1.090e-42
Identity = 72/155 (46.45%), Postives = 107/155 (69.03%), Query Frame = 2 
Query:  137 MSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            MS+YA FVQ  RE++K K+P+ +V F+EFSKKC+E+W+ +  KEK +FEDMA VDK RY +EM  YVPP G + +++K  +DP  PKR  SAFF+Y  E+R +++ E+P   +G IAK+LG+ W      +K  YE    + KE+++++M  Y+S
Sbjct:   13 MSSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFEDMAKVDKVRYDREMKTYVPPKGERGSRKK--KDPNAPKRPPSAFFIYCAEYRSKVRAENPGLTIGSIAKKLGEMWNNAPADEKSIYERKTAKLKEKYDKDMASYRS 165
[Close]
BLAST of High mobility group protein vs. Ensembl Sea Lamprey
Match: hmgb2a (high mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126])

HSP 1 Score: 139.813 bits (351), Expect = 5.579e-41
Identity = 74/160 (46.25%), Postives = 110/160 (68.75%), Query Frame = 2 
Query:  119 NRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYK 592
             +P+G MS+YA FVQ  RE++K KHP+ +V F+EFSKKC+E+W+ + PKEK +FE+MA  DKAR+ +EM  YVPP G     +++ +DP  PKR  SAFF++  E R ++K +HP   +G+IAK LG+ W   T   K  YE+ A + KE++E+++  Y+
Sbjct:    7 GKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSPKEKARFEEMAKADKARFDREMKNYVPPKG-----KRKTKDPNAPKRPPSAFFVFCSEHRPKVKADHPGLGIGEIAKRLGEMWGLLTPETKSPYEKKAAKLKEKYEKDVAAYR 161
[Close]
BLAST of High mobility group protein vs. Ensembl Yeast
Match: NHP6B (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication [Source:SGD;Acc:S000002157])

HSP 1 Score: 59.3066 bits (142), Expect = 5.882e-12
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 2 
Query:  287 MAAVDKARYIKEMNEYVPPGGVKPNKRKQPR--DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKS 595
            MAA  +A+  KE           P KR   R  DP  PKRGLSA+  ++ E R  ++ E+PD   G + + LG+RW+  T  +K  YE  A+ +K+R+E E + Y +
Sbjct:    1 MAATKEAKQPKE-----------PKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELYNA 96

HSP 2 Score: 46.9802 bits (110), Expect = 1.412e-7
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            KD N PK  +SAY  F    R+  ++++PD  V F +  +   E+W+ L  +EK+ +E  A  DK RY  E   Y
Sbjct:   22 KDPNAPKRGLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESEKELY 94
[Close]
BLAST of High mobility group protein vs. Ensembl Yeast
Match: NHP6A (High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to chromosomes; functionally redundant with Nhp6Bp; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6A has a paralog, NHP6B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006256])

HSP 1 Score: 56.225 bits (134), Expect = 7.235e-11
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  380 DPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKS 595
            DP  PKR LSA+  ++ E R  ++ E+PD   G + K+LG++W+  T  +K  YE  A+ +K+R+E E + Y +
Sbjct:   17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90

HSP 2 Score: 53.1434 bits (126), Expect = 7.410e-10
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            D N PK A+SAY  F    R+  ++++PD  + F +  KK  EKW+ L P+EK+ +E  A  DK RY  E   Y
Sbjct:   17 DPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88
[Close]
BLAST of High mobility group protein vs. Ensembl Yeast
Match: HMO1 (Chromatin associated high mobility group (HMG) family member; involved in compacting, bending, bridging and looping DNA; rDNA-binding component that regulates transcription from RNA polymerase I promoters; regulates start site selection of ribosomal protein genes via RNA polymerase II promoters; role in genome maintenance; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000002581])

HSP 1 Score: 48.1358 bits (113), Expect = 3.918e-7
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 2 
Query:  350 VKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEH-----PDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEY----KSGTFVP 610
            VK  +RK  RDP  PK+ L+ FF YS   R +++++      P     +I +E+ K+W+  +D  K K+++    E E ++RE  +Y    K+GT  P
Sbjct:   92 VKAVRRKIERDPNAPKKPLTVFFAYSAYVRQELREDRQKAGLPPLSSTEITQEISKKWKELSDNEKEKWKQAYNVELENYQREKSKYLEAKKNGTLPP 189
[Close]
BLAST of High mobility group protein vs. Ensembl Yeast
Match: IXR1 (Transcriptional repressor that regulates hypoxic genes during normoxia; involved in the aerobic repression of genes such as COX5b, TIR1, and HEM13; binds DNA intrastrand cross-links formed by cisplatin; HMG (high mobility group box) domain containing protein which binds and bends cisplatin-modified DNA, blocking excision repair; IXR1 has a paralog, ABF2, that arose from the whole genome duplication [Source:SGD;Acc:S000001515])

HSP 1 Score: 48.9062 bits (115), Expect = 5.086e-7
Identity = 49/180 (27.22%), Postives = 78/180 (43.33%), Query Frame = 2 
Query:  125 PKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQF--EDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETC--ADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNET 652
            PK   SAY  F   IR +   + P+  V   E SK  + +W++L   +KK F  E     +K R +++  E   P                PKR    F  ++QE R  +  E+PD  + +I K +G+RW     A K +Y        E +++ + E++S      C  D+   +GN T
Sbjct:  361 PKRPSSAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYEEFRTNWEKYRVVRDAYEKTLP----------------PKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEY-------TETYKKRLKEWES------CYPDENDPNGNPT 509
[Close]
BLAST of High mobility group protein vs. Ensembl Yeast
Match: ABF2 (Mitochondrial DNA-binding protein; involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation; ABF2 has a paralog, IXR1, that arose from the whole genome duplication; human homolog TFAM can complement yeast abf2 mutant, rescuing the loss-of-mitochondrial DNA phenotype in a yeast abf2 strain [Source:SGD;Acc:S000004676])

HSP 1 Score: 45.8246 bits (107), Expect = 1.376e-6
Identity = 38/127 (29.92%), Postives = 61/127 (48.03%), Query Frame = 2 
Query:  350 VKPNKRKQPRDPAQ---PKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREK-----ERFEREMDEYK-----SGTFVPYCKK----------DKIMRDGNETIGD 661
            +K +KR Q R+      PKR  SA+FLY Q+ R Q   E+P  R  +I+K  G++W+      K + ++ R+K     ++ ++E DE       +G F+ Y  +          DK   D  + IGD
Sbjct:   26 LKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGD 152

HSP 2 Score: 45.0542 bits (105), Expect = 3.010e-6
Identity = 38/136 (27.94%), Postives = 63/136 (46.32%), Query Frame = 2 
Query:  125 PKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFED-----MAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETC 517
            PK   SAY  ++Q  R ++  ++P   +  +E SK   EKW+ L    K+++        +   KA+  KE +E +PP           + PA P      F  Y+ E R Q+  +HPD    D+ K +G +W++ 
Sbjct:   43 PKRPTSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQKAK--KEFDEKLPP-----------KKPAGP------FIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSL 157
[Close]
BLAST of High mobility group protein vs. Ensembl Nematostella
Match: EDO36028 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJW6])

HSP 1 Score: 100.138 bits (248), Expect = 1.099e-25
Identity = 63/167 (37.72%), Postives = 98/167 (58.68%), Query Frame = 2 
Query:  119 NRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPN---KRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWE--TCADKGKYEELARREKERFEREMDEYKSGTF 604
            N+PKGA SAY  F+Q  REK + +        ++FSK  AEKW+ +  +EK+ F   A  DK R+ +EM  Y PP   +     ++KQ +DP +PKR LSA+F +    R  +K ++P+   G ++K LG+ W   T  DK +Y+++A+++K R+E EM  +K G  
Sbjct:    1 NKPKGAKSAYNFFLQDQREKLQREEG--KFSLADFSKVSAEKWKNMSEEEKETFVQKAGKDKERFKEEMQSYTPPPSEESGKKKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAFKDGKL 165

HSP 2 Score: 47.3654 bits (111), Expect = 1.297e-6
Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 2 
Query:  113 DFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            D N+PK  +SAY  F+ + R+  K  +P+ +      SK   E W ++   +K Q++DMA  DK RY  EM  +
Sbjct:   89 DPNKPKRCLSAYFHFINLKRDDVKKDNPNASG--GALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAF 160
[Close]
BLAST of High mobility group protein vs. Ensembl Nematostella
Match: EDO39305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAG5])

HSP 1 Score: 56.9954 bits (136), Expect = 4.531e-11
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  392 PKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEY 589
            PKR +SA+ L+  + R +IKD++P   V +++K  G+ W+   DK K+EE A  EK+++ + M EY
Sbjct:    1 PKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAAIEKQKYVQRMKEY 66

HSP 2 Score: 49.6766 bits (117), Expect = 2.040e-8
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:  125 PKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            PK AMSAY  ++   R++ K+K+P   +  +E SK   E W+ L  K K  +E+ AA++K +Y++ M EY
Sbjct:    1 PKRAMSAYMLWLNDTRQEIKDKNP--GISVTEVSKVAGEMWKNLTDKSK--WEEKAAIEKQKYVQRMKEY 66
[Close]
BLAST of High mobility group protein vs. Ensembl Nematostella
Match: EDO41032 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5L8])

HSP 1 Score: 53.1434 bits (126), Expect = 3.152e-8
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            +KD N PK  ++ Y  F+   REK ++++PD  + F E ++     W QL   +K+ F + A  DK RY+KE+ EY
Sbjct:    9 HKDVNAPKAPLTGYVRFLNEHREKVRSENPD--LPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERYMKELEEY 82

HSP 2 Score: 45.4394 bits (106), Expect = 9.698e-6
Identity = 27/102 (26.47%), Postives = 53/102 (51.96%), Query Frame = 2 
Query:  362 KRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCAD--KGKYEELARREKERFEREMDEY-KSGTFVPYCKKDKIMRDGNETIG 658
            ++K  +D   PK  L+ +  +  E R +++ E+PD    ++ + LG  W       K  + E A ++KER+ +E++EY ++ T+  +  K K ++ G   I 
Sbjct:    5 RKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERYMKELEEYQRTDTYKMFIAKQKALKKGRAQIS 106
[Close]
BLAST of High mobility group protein vs. Ensembl Nematostella
Match: EDO47230 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RMY4])

HSP 1 Score: 50.8322 bits (120), Expect = 1.928e-7
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 2 
Query:  104 TNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            T +D N PK  ++ Y  F+   REK +++HP+  + F E +K    +W ++   +K+++ D A  DK RYI E+  Y
Sbjct:   14 TLRDTNAPKAPLTGYVQFLNEQREKVRSEHPE--LPFPEVTKILGAEWSKMSQDDKQRYLDDAERDKERYIIELENY 88

HSP 2 Score: 48.9062 bits (115), Expect = 8.873e-7
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:  362 KRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEY-KSGTFVPYCKK 622
            +RK  RD   PK  L+ +  +  E R +++ EHP+    ++ K LG  W   +  DK +Y + A R+KER+  E++ Y K+  +  + KK
Sbjct:   11 RRKTLRDTNAPKAPLTGYVQFLNEQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQRYLDDAERDKERYIIELENYQKTDAYKSFVKK 100
[Close]
BLAST of High mobility group protein vs. Ensembl Nematostella
Match: EDO40495 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S799])

HSP 1 Score: 50.447 bits (119), Expect = 2.896e-7
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFS--EFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKR 400
            KD N PK   +A+  F Q  R   +  H D   V    E +K  A++W  L P EKK + +M   DK RY  EM +Y      KP  +KQ +DP+  KR
Sbjct:  109 KDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDEKKVYYEMYERDKERYELEMKQY---SSDKPPSKKQ-KDPSSKKR 203

HSP 2 Score: 48.521 bits (114), Expect = 1.150e-6
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 2 
Query:  362 KRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRV----GDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            K+ + +DP  PK+  +AFF++ Q+ R  ++++H D        ++ K L K W      +K  Y E+  R+KER+E EM +Y S
Sbjct:  104 KQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDEKKVYYEMYERDKERYELEMKQYSS 187
[Close]
BLAST of High mobility group protein vs. Ensembl Medaka
Match: hmgb1b (high mobility group protein B1 [Source:NCBI gene;Acc:101156596])

HSP 1 Score: 149.828 bits (377), Expect = 4.329e-44
Identity = 81/164 (49.39%), Postives = 115/164 (70.12%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
            KD  +P+G MS+YA FVQ  RE++K KHPD +V FSEFSKKC+E+W+ + PKEK +FEDMA  DK RY +EM  YVPP G    K+K+ +DP  PKR  SAFFL+  +FR +IK E P   +GD AK+LG+ W + +  +K  YE+ A + KE++++++  Y++
Sbjct:    3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSPKEKGKFEDMAKQDKVRYEREMKNYVPPKG---QKKKRFKDPNAPKRPPSAFFLFCADFRPKIKSESPGLSIGDTAKKLGEMWNSSSAEEKQPYEKKAAKLKEKYDKDIVAYRT 163
[Close]
BLAST of High mobility group protein vs. Ensembl Medaka
Match: hmgb1a (high mobility group-T protein [Source:NCBI gene;Acc:101165167])

HSP 1 Score: 144.05 bits (362), Expect = 9.587e-42
Identity = 79/165 (47.88%), Postives = 110/165 (66.67%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCA--DKGKYEELARREKERFEREMDEYKS 595
             KD  +P+G MS+YA FVQ  RE++K KHPD +V F+EFSKKC+E+W+ +  KEK +FEDMA  DK RY +EM  YVP  G K  K K   DP  PKR  SAFF++  EFR ++K E P   +GD+AK LG+ W + +  DK  YE+ A + KE++ +++  Y++
Sbjct:    2 GKDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKGKFEDMARQDKVRYDREMMSYVPAKGAKTKKFK---DPNAPKRPPSAFFIFCSEFRPKVKGESPGLTIGDVAKRLGEMWNSTSAEDKQPYEKKAAKLKEKYGKDIAAYRA 163
[Close]
BLAST of High mobility group protein vs. Ensembl Medaka
Match: hmgb2a (high mobility group protein B2 [Source:NCBI gene;Acc:101157589])

HSP 1 Score: 143.665 bits (361), Expect = 1.459e-41
Identity = 77/165 (46.67%), Postives = 112/165 (67.88%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWET--CADKGKYEELARREKERFEREMDEYKS 595
             KD N+P+G  SAYA FV   RE++K KHP  +V F+EFSKKC+E+W+ +  KEK +F+++A  DKARY +EM  YVPP G    K K+ +DP  PKR  SAFF++  + R +IK+++P   +GDIAK+LG+ W T    DK  YE  A + KE++E+++  Y++
Sbjct:    2 TKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSSKEKVKFDELAKTDKARYDREMKTYVPPKGA--KKVKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGISIGDIAKKLGELWATQSAKDKAPYEAKAAKLKEKYEKDVAAYRA 164
[Close]
BLAST of High mobility group protein vs. Ensembl Medaka
Match: hmg20a (high mobility group 20A [Source:NCBI gene;Acc:101158691])

HSP 1 Score: 54.299 bits (129), Expect = 4.339e-8
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            KD N PK  ++ Y  F+   RE+ + + PD  V F E ++    +W +L P+EK+++ D A  DK RY++E+ +Y
Sbjct:   40 KDSNAPKAPLTGYVRFMNDRREQLRAERPD--VPFPEITRMLGNEWSKLPPEEKQRYLDEAERDKERYMRELEKY 112
[Close]
BLAST of High mobility group protein vs. Ensembl Medaka
Match: hmg20a (high mobility group 20A [Source:NCBI gene;Acc:101158691])

HSP 1 Score: 54.299 bits (129), Expect = 4.339e-8
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  110 KDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEY 334
            KD N PK  ++ Y  F+   RE+ + + PD  V F E ++    +W +L P+EK+++ D A  DK RY++E+ +Y
Sbjct:   40 KDSNAPKAPLTGYVRFMNDRREQLRAERPD--VPFPEITRMLGNEWSKLPPEEKQRYLDEAERDKERYMRELEKY 112
[Close]
BLAST of High mobility group protein vs. Planmine SMEST
Match: SMESG000023365.1 (SMESG000023365.1)

HSP 1 Score: 387.497 bits (994), Expect = 7.555e-138
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 2 
Query:   98 MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIGD 661
            MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIGD
Sbjct:    1 MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIGD 188
[Close]
BLAST of High mobility group protein vs. Planmine SMEST
Match: SMESG000068286.1 (SMESG000068286.1)

HSP 1 Score: 203.756 bits (517), Expect = 2.374e-65
Identity = 101/169 (59.76%), Postives = 134/169 (79.29%), Query Frame = 2 
Query:  122 RPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDK 628
            +PKGA + YACFVQV+RE++K KHPDE +VFSEFSK+C+EKW+++ PKEK++F D+AA DK RY+KEM+ Y PP G K NKRK  +DP +PK   +AFF +S E R +IK+E+P+++VGD+AK LGK WE C DK KYEE A+R+KER+ +E++EYKSGT  P  KK K
Sbjct:    5 KPKGAKTPYACFVQVVREEHKKKHPDEQIVFSEFSKRCSEKWKEMSPKEKQRFMDIAAKDKERYLKEMDNYQPPAGTK-NKRK-IKDPNKPKGAWTAFFFFSDEHRKKIKEENPEYKVGDVAKVLGKMWEACKDKSKYEEQAKRDKERYNKELEEYKSGT--PVSKKTK 169
[Close]
BLAST of High mobility group protein vs. Planmine SMEST
Match: SMESG000052032.1 (SMESG000052032.1)

HSP 1 Score: 205.682 bits (522), Expect = 1.079e-64
Identity = 102/186 (54.84%), Postives = 140/186 (75.27%), Query Frame = 2 
Query:  107 NKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPP--GGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIG 658
            +KD  RPKGAMSAYA FVQVIRE++K KHP E VVFSEFSKKCAEKW+ + PKEKK+FE+MAA DK R+ +EMN Y P   GG +  KR++ ++P QPKR  SAFF +  E+R ++++ HPDWRVG+IAKELG+ WE+C DK KYE+ +  +K+R+E +M ++++G +VP  K+ +   +G+  I 
Sbjct:    5 DKDKPRPKGAMSAYAYFVQVIREEHKRKHPGEQVVFSEFSKKCAEKWKLMTPKEKKRFEEMAASDKDRFNREMNNYQPTGEGGRRRRKRRRIKEPGQPKRAWSAFFFFCDEYRPKVREAHPDWRVGNIAKELGRLWESCTDKEKYEKKSEADKQRYEEQMSQFRAGQYVPPVKRPRADSNGSALIA 190
[Close]
BLAST of High mobility group protein vs. Planmine SMEST
Match: SMESG000034017.1 (SMESG000034017.1)

HSP 1 Score: 157.147 bits (396), Expect = 8.866e-47
Identity = 74/160 (46.25%), Postives = 117/160 (73.12%), Query Frame = 2 
Query:  128 KGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFV 607
            K AM+AY  FV++IR++++ KHP+E   F+EFS KCAEKW+ + P+E+K+FE++A+        E N+  PPG  K  +++Q + P QPKR  SAFF +  E R +++ EHPDWRV ++A+ELG+ WE C+D+ +YE++A  +KER+E+EM+++++G FV
Sbjct:   10 KLAMTAYTYFVKLIRDEHRKKHPEEQFDFTEFSAKCAEKWKSMKPEERKRFEELAS--------EENDKKPPGRKKRTRKRQKKAPGQPKRAWSAFFYFCDERRPKVRKEHPDWRVAEVARELGRLWEACSDRDRYEKMATLDKERYEKEMEQFRAGNFV 161
[Close]
BLAST of High mobility group protein vs. Planmine SMEST
Match: SMESG000020771.1 (SMESG000020771.1)

HSP 1 Score: 150.599 bits (379), Expect = 1.210e-44
Identity = 79/172 (45.93%), Postives = 112/172 (65.12%), Query Frame = 2 
Query:  122 RPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKWRQLGPKEKKQFEDMAAVDKARYIKEMNEYVP-PGGVKPNKR--KQPRDPAQPKRGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELARREKERFEREMDEYKSGTFVPYCKKDK 628
            +P GA SAY  + Q +RE+YK K+PD  V F+E SK  +EKW+ +  KEK+++  +A  DK RY KEM  Y P     KP+K+  ++ +DP +PK  L+AFF +S E R  +K+++P+++VGDIAK LGK W  C DK KYEE+ +  KE++   M EYK+G   P  KK K
Sbjct:    5 KPSGAKSAYIIYTQAVREEYKKKNPDGKVNFTEISKIASEKWKNISDKEKEKYNVLAQADKKRYTKEMEGYEPETDNRKPSKKAKREAKDPNKPKAPLTAFFFFSNEHRQTVKEKNPEFKVGDIAKVLGKMWSECKDKSKYEEMNKEAKEKYNLAMLEYKNG--APSAKKSK 174
The following BLAST results are available for this feature:
BLAST of High mobility group protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
HMGB14.500e-4550.31high mobility group box 1 [Source:HGNC Symbol;Acc:... [more]
HMGB14.500e-4550.31high mobility group box 1 [Source:HGNC Symbol;Acc:... [more]
HMGB14.500e-4550.31high mobility group box 1 [Source:HGNC Symbol;Acc:... [more]
HMGB14.500e-4550.31high mobility group box 1 [Source:HGNC Symbol;Acc:... [more]
HMGB12.209e-4453.68high mobility group box 1 [Source:HGNC Symbol;Acc:... [more]
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BLAST of High mobility group protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hmg-1.25.407e-3541.42High mobility group protein 1.2 [Source:UniProtKB... [more]
hmg-1.25.407e-3541.42High mobility group protein 1.2 [Source:UniProtKB... [more]
hmg-1.22.742e-3441.76High mobility group protein 1.2 [Source:UniProtKB... [more]
hmg-1.22.903e-3441.76High mobility group protein 1.2 [Source:UniProtKB... [more]
hmg-1.22.903e-3441.76High mobility group protein 1.2 [Source:UniProtKB... [more]
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BLAST of High mobility group protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Dsp11.083e-5050.56gene:FBgn0278608 transcript:FBtr0089259[more]
Dsp11.083e-5050.56gene:FBgn0278608 transcript:FBtr0089260[more]
Dsp11.083e-5050.56gene:FBgn0278608 transcript:FBtr0089261[more]
Dsp11.108e-5050.56gene:FBgn0278608 transcript:FBtr0089262[more]
Dsp11.108e-5050.56gene:FBgn0278608 transcript:FBtr0339766[more]
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BLAST of High mobility group protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hmgb2b2.767e-4748.17high mobility group box 2b [Source:ZFIN;Acc:ZDB-GE... [more]
hmgb2b2.767e-4748.17high mobility group box 2b [Source:ZFIN;Acc:ZDB-GE... [more]
hmgb1a6.720e-4448.48high mobility group box 1a [Source:ZFIN;Acc:ZDB-GE... [more]
hmgb1a6.720e-4448.48high mobility group box 1a [Source:ZFIN;Acc:ZDB-GE... [more]
hmgb1a6.720e-4448.48high mobility group box 1a [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of High mobility group protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cep170b1.271e-4750.31centrosomal protein 170B [Source:Xenbase;Acc:XB-GE... [more]
hmgb22.396e-4450.31high mobility group box 2 [Source:NCBI gene;Acc:39... [more]
hmgb32.175e-3545.16high mobility group box 3 [Source:NCBI gene;Acc:44... [more]
hmgb33.174e-3345.27high mobility group box 3 [Source:NCBI gene;Acc:44... [more]
mettl52.167e-737.50methyltransferase like 5 [Source:Xenbase;Acc:XB-GE... [more]
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BLAST of High mobility group protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Hmgb12.341e-4550.31high mobility group box 1 [Source:MGI Symbol;Acc:M... [more]
Hmgb13.089e-4550.31high mobility group box 1 [Source:MGI Symbol;Acc:M... [more]
Hmgb13.089e-4550.31high mobility group box 1 [Source:MGI Symbol;Acc:M... [more]
Hmgb13.089e-4550.31high mobility group box 1 [Source:MGI Symbol;Acc:M... [more]
Hmgb12.351e-4453.68high mobility group box 1 [Source:MGI Symbol;Acc:M... [more]
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BLAST of High mobility group protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q24537|HMG2_DROME1.290e-4950.56High mobility group protein DSP1 OS=Drosophila mel... [more]
sp|P07746|HMGT_ONCMY3.596e-4748.52High mobility group-T protein OS=Oncorhynchus myki... [more]
sp|Q9YH06|HMGB1_CHICK2.138e-4451.53High mobility group protein B1 OS=Gallus gallus OX... [more]
sp|P63159|HMGB1_RAT2.161e-4450.31High mobility group protein B1 OS=Rattus norvegicu... [more]
sp|B1MTB0|HMGB1_PLEMO2.161e-4450.31High mobility group protein B1 OS=Plecturocebus mo... [more]
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BLAST of High mobility group protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3UE702.456e-7063.22Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A068YKT41.061e-6961.08High mobility group protein OS=Echinococcus multil... [more]
A0A1I8IJA44.629e-6965.27Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A3S5AFA82.533e-6865.48Uncharacterized protein (Fragment) OS=Protopolysto... [more]
W6UD123.648e-6859.47High mobility group protein DSP1 OS=Echinococcus g... [more]
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BLAST of High mobility group protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000044228.15.764e-4547.02high mobility group protein B2-like [Source:NCBI g... [more]
hmgb2a1.375e-4447.88high mobility group box 2 [Source:NCBI gene;Acc:11... [more]
hmgb1a2.017e-4448.21high mobility group-T protein-like [Source:NCBI ge... [more]
hmgb1b1.364e-4251.82high mobility group protein B1-like [Source:NCBI g... [more]
hmgb3a6.419e-3541.72high mobility group protein B3 [Source:NCBI gene;A... [more]
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BLAST of High mobility group protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
hmgb2b1.090e-4246.45high mobility group box 2b [Source:ZFIN;Acc:ZDB-GE... [more]
hmgb2a5.579e-4146.25high mobility group box 2a [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of High mobility group protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
NHP6B5.882e-1236.45High-mobility group (HMG) protein; binds to and re... [more]
NHP6A7.235e-1137.84High-mobility group (HMG) protein; binds to and re... [more]
HMO13.918e-732.65Chromatin associated high mobility group (HMG) fam... [more]
IXR15.086e-727.22Transcriptional repressor that regulates hypoxic g... [more]
ABF21.376e-629.92Mitochondrial DNA-binding protein; involved in mit... [more]
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BLAST of High mobility group protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO360281.099e-2537.72Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393054.531e-1139.39Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO410323.152e-836.84Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO472301.928e-733.77Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO404952.896e-737.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of High mobility group protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hmgb1b4.329e-4449.39high mobility group protein B1 [Source:NCBI gene;A... [more]
hmgb1a9.587e-4247.88high mobility group-T protein [Source:NCBI gene;Ac... [more]
hmgb2a1.459e-4146.67high mobility group protein B2 [Source:NCBI gene;A... [more]
hmg20a4.339e-836.00high mobility group 20A [Source:NCBI gene;Acc:1011... [more]
hmg20a4.339e-836.00high mobility group 20A [Source:NCBI gene;Acc:1011... [more]
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BLAST of High mobility group protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000023365.17.555e-138100.00SMESG000023365.1[more]
SMESG000068286.12.374e-6559.76SMESG000068286.1[more]
SMESG000052032.11.079e-6454.84SMESG000052032.1[more]
SMESG000034017.18.866e-4746.25SMESG000034017.1[more]
SMESG000020771.11.210e-4445.93SMESG000020771.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016158 ID=SMED30016158|Name=High mobility group protein|organism=Schmidtea mediterranea sexual|type=transcript|length=903bp
GTCTGTTGATAAAAGCTGCACGATAAATTTAAAACTGTAAAATTAAATTT
TTATTTTTCAAAGGTTTTGAAAGAATAACGTTAAAGCTTAAACTTAGATG
AGTACGAATAAAGATTTTAATCGCCCAAAAGGTGCTATGTCTGCATATGC
GTGTTTTGTTCAGGTTATTAGAGAAAAATATAAAAATAAGCATCCAGATG
AAGCTGTAGTTTTCAGTGAATTCTCCAAAAAATGTGCAGAAAAATGGCGA
CAATTAGGTCCTAAAGAGAAAAAGCAATTTGAAGATATGGCGGCTGTTGA
TAAAGCTAGATATATTAAAGAAATGAATGAATATGTCCCACCTGGTGGCG
TTAAGCCAAATAAACGTAAGCAACCCCGAGATCCAGCCCAGCCGAAACGC
GGGTTATCGGCTTTTTTTCTCTACAGTCAAGAATTCAGAGGTCAAATTAA
AGACGAACACCCAGATTGGAGAGTTGGTGATATTGCCAAAGAATTAGGCA
AACGATGGGAGACCTGCGCAGACAAGGGCAAATATGAAGAATTAGCACGG
AGAGAAAAGGAAAGATTTGAGAGAGAAATGGATGAATATAAAAGTGGTAC
ATTTGTTCCATATTGTAAAAAAGATAAAATTATGAGAGACGGTAATGAAA
CTATAGGAGATTAATTTATGTGTTGTTGATTCGGCAATTTGAAGTATTTG
TAAAGATTTAACCCGAATTTTATGATAGTTTGTTATTTTGCATTTCGAAT
GTTGTCTGGTATGATTGTAGCGAAAATATCGCTTGCGATTGATTGCGATT
GTGTAGATAATCGACTATTTGTTTTTTGAATAAAAATAATTGTTTTTACA
TTTGTCATTAATTAATTAAATTACAAATTTGTTATTAATTGAGTTATTAA
TTG
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protein sequence of SMED30016158-orf-1

>SMED30016158-orf-1 ID=SMED30016158-orf-1|Name=SMED30016158-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=189bp
MSTNKDFNRPKGAMSAYACFVQVIREKYKNKHPDEAVVFSEFSKKCAEKW
RQLGPKEKKQFEDMAAVDKARYIKEMNEYVPPGGVKPNKRKQPRDPAQPK
RGLSAFFLYSQEFRGQIKDEHPDWRVGDIAKELGKRWETCADKGKYEELA
RREKERFEREMDEYKSGTFVPYCKKDKIMRDGNETIGD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 114..132
score: 49.12
coord: 41..63
score: 57.33
coord: 132..151
score: 24.63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..100
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 4..80
coord: 88..165
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 4..80
coord: 88..165
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 10..76
e-value: 5.3123E-17
score: 69.5789
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 99..150
e-value: 1.05537E-13
score: 61.1045
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 9..81
e-value: 2.0E-18
score: 77.2
coord: 98..166
e-value: 9.3E-22
score: 88.3
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 8..79
e-value: 3.0E-19
score: 69.4
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 99..165
e-value: 1.3E-20
score: 73.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 10..80
score: 16.464
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 99..165
score: 19.065
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 1..81
e-value: 1.0E-29
score: 104.7
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 85..167
e-value: 2.0E-22
score: 81.3
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 5..82
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 81..166