Calcium-responsive transactivator

Overview
NameCalcium-responsive transactivator
Smed IDSMED30016152
Length (bp)2002
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Calcium-responsive transactivator (SMED30016152) t-SNE clustered cells

Violin plots show distribution of expression levels for Calcium-responsive transactivator (SMED30016152) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Calcium-responsive transactivator (SMED30016152) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Calcium-responsive transactivator (SMED30016152) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30016152

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016152SMESG000026642.1 SmedASXL_014751SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30016152SMESG000026642.1 SmedASXL_014751SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Human
Match: SS18L2 (SS18 like 2 [Source:HGNC Symbol;Acc:HGNC:15593])

HSP 1 Score: 46.9802 bits (110), Expect = 2.676e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 3 
Query:   66 VNNVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQ--EAEELLKSLHKNLIYLATIAD 242
            V + ++    VN + IQ++L+EN  LI  I+E Q + +  E  +    LH+NLIYLATIAD
Sbjct:    6 VPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Human
Match: SS18L2 (SS18 like 2 [Source:HGNC Symbol;Acc:HGNC:15593])

HSP 1 Score: 46.9802 bits (110), Expect = 2.676e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 3 
Query:   66 VNNVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQ--EAEELLKSLHKNLIYLATIAD 242
            V + ++    VN + IQ++L+EN  LI  I+E Q + +  E  +    LH+NLIYLATIAD
Sbjct:    6 VPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Human
Match: SS18L1 (SS18L1 subunit of BAF chromatin remodeling complex [Source:HGNC Symbol;Acc:HGNC:15592])

HSP 1 Score: 51.2174 bits (121), Expect = 4.412e-6
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIAD 242
            V  Q IQK+LDEN  LI  I+E Q + + AE  +  + LH+NL+YLATIAD
Sbjct:   16 VTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Fly
Match: CG10555 (gene:FBgn0030034 transcript:FBtr0071174)

HSP 1 Score: 50.8322 bits (120), Expect = 4.644e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAEELLK---SLHKNLIYLATIAD 242
            VNS  IQK+LDEN GLI  I + Q    +A+E +    +LH+NL+YLA +AD
Sbjct:  143 VNSAQIQKMLDENCGLIQTIQDFQSMG-KAQECMSYHVALHRNLVYLAQLAD 193
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Fly
Match: CG10555 (gene:FBgn0030034 transcript:FBtr0343353)

HSP 1 Score: 50.8322 bits (120), Expect = 4.644e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAEELLK---SLHKNLIYLATIAD 242
            VNS  IQK+LDEN GLI  I + Q    +A+E +    +LH+NL+YLA +AD
Sbjct:  143 VNSAQIQKMLDENCGLIQTIQDFQSMG-KAQECMSYHVALHRNLVYLAQLAD 193
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Zebrafish
Match: ss18l2 (ss18, like 2 [Source:ZFIN;Acc:ZDB-GENE-050417-268])

HSP 1 Score: 46.2098 bits (108), Expect = 3.948e-6
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIADQTTS 254
            +N + IQ++LDEN  L+  I E QQ+ +  E  +  + LH+N++YL TIAD +T 
Sbjct:   16 INQETIQRLLDENDQLVRCISEYQQKGRATECVQYQQILHRNIVYLGTIADASTE 70
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Mouse
Match: Ss18l2 (SS18, nBAF chromatin remodeling complex subunit like 2 [Source:MGI Symbol;Acc:MGI:1349474])

HSP 1 Score: 49.6766 bits (117), Expect = 2.071e-7
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 3 
Query:   72 NVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQ--EAEELLKSLHKNLIYLATIADQTTSA 257
            + ++    VN + IQ++L+EN  LI  I+E Q + +  E  +    LH+NLIYLATIAD  TS+
Sbjct:    8 DWLRGKAKVNQETIQRLLEENDQLIRCIVEYQNKGRANECVQYQHVLHRNLIYLATIADANTSS 71
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Mouse
Match: Ss18l1 (SS18, nBAF chromatin remodeling complex subunit like 1 [Source:MGI Symbol;Acc:MGI:2444061])

HSP 1 Score: 49.6766 bits (117), Expect = 8.099e-6
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIAD 242
            V  Q IQK+LDEN  LI  I++ Q + + AE  +  + LH+NL+YLATIAD
Sbjct:   16 VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. UniProt/SwissProt
Match: sp|Q9D174|S18L2_MOUSE (SS18-like protein 2 OS=Mus musculus OX=10090 GN=Ss18l2 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.449e-6
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 3 
Query:   72 NVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQ--EAEELLKSLHKNLIYLATIADQTTSA 257
            + ++    VN + IQ++L+EN  LI  I+E Q + +  E  +    LH+NLIYLATIAD  TS+
Sbjct:    8 DWLRGKAKVNQETIQRLLEENDQLIRCIVEYQNKGRANECVQYQHVLHRNLIYLATIADANTSS 71
[Close]
BLAST of Calcium-responsive transactivator vs. TrEMBL
Match: A0A095A071 (Calcium-responsive transactivator OS=Schistosoma haematobium OX=6185 GN=MS3_07251 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.149e-8
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQN--QEAEELLKSLHKNLIYLATIADQTT---SAGNSNN----PAHSTQQNQY-----NYPQATVSHST 335
            ++ +QP+    IQK+LDENV LIH+++  Q+    +EA EL + LH+NLIYLATIAD+T    + G +N     P+  TQ NQ      NYP + V+ S+
Sbjct:    6 LRREQPIQPSSIQKMLDENVRLIHSLMAHQRVGAVKEAVELERVLHRNLIYLATIADRTATQPAVGPTNCSHPIPSGLTQPNQIQDSAPNYPLSVVNASS 105
[Close]
BLAST of Calcium-responsive transactivator vs. TrEMBL
Match: A0A0R3SZM3 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS11216 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.854e-8
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAEEL---LKSLHKNLIYLATIADQTTSAGNSN 269
            VN+  IQKILD+NV LI +II  QQ      EL   L+ LHKNLIYLATIADQ  S+ NSN
Sbjct:   16 VNTSVIQKILDDNVQLIRSIISNQQTGNTGHELQQNLQLLHKNLIYLATIADQANSS-NSN 75
[Close]
BLAST of Calcium-responsive transactivator vs. TrEMBL
Match: A0A183N5D4 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS23509 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.908e-8
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQN--QEAEELLKSLHKNLIYLATIADQTTS---AGNSNN----PAHSTQQNQY-----NYPQATVSHST 335
            ++ +QP+    IQK+LDENV LIH+++  Q+    +EA EL + LH+NLIYLATIAD+T +    G +N     P+  TQ NQ      NYP + V+ S+
Sbjct:   21 LRREQPIQPSSIQKMLDENVRLIHSLMAHQRVGAVKEAVELERVLHRNLIYLATIADRTATQHVVGPTNCSHPIPSGLTQPNQIQDSAPNYPLSVVNASS 120
[Close]
BLAST of Calcium-responsive transactivator vs. TrEMBL
Match: C1LNB0 (SSXT domain-containing protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.178e-8
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQN--QEAEELLKSLHKNLIYLATIADQTTS 254
            ++ +QP+    IQK+LDENV LIH+++  Q+    +EA EL + LH+NLIYLATIAD+T +
Sbjct:    8 LRREQPIQPSSIQKMLDENVRLIHSLMAHQRVGAVKEAAELERVLHRNLIYLATIADRTAA 68
[Close]
BLAST of Calcium-responsive transactivator vs. TrEMBL
Match: C1L8D3 (Calcium-responsive transactivator OS=Schistosoma japonicum OX=6182 GN=EWB00_008839 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.342e-8
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQN--QEAEELLKSLHKNLIYLATIADQTTS 254
            ++ +QP+    IQK+LDENV LIH+++  Q+    +EA EL + LH+NLIYLATIAD+T +
Sbjct:    8 LRREQPIQPSSIQKMLDENVRLIHSLMAHQRVGAVKEAAELERVLHRNLIYLATIADRTAA 68
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Cavefish
Match: ss18l2 (SS18 like 2 [Source:NCBI gene;Acc:103043527])

HSP 1 Score: 45.4394 bits (106), Expect = 9.396e-6
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIADQTTSAGNS 266
            +N + IQ++LDEN  L+  I E  Q+ +  E  +  + LH+NL+YL TIAD +    +S
Sbjct:   16 INQETIQRLLDENDQLVRCIAEYMQKGRATECVQYQQILHRNLVYLGTIADASPDLPDS 74
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Nematostella
Match: EDO39218 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAM5])

HSP 1 Score: 51.2174 bits (121), Expect = 9.516e-7
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 3 
Query:   99 NSQFIQKILDENVGLIHAIIEKQQQNQ--EAEELLKSLHKNLIYLATIAD 242
            +SQ +Q++LDEN  LI AI++ Q + +  E+ +  + LH+NL+YLAT+AD
Sbjct:   14 SSQSVQELLDENTQLIQAIVDYQNKGKAYESTQYQQLLHRNLVYLATLAD 63
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Medaka
Match: ss18l2 (SS18 like 2 [Source:NCBI gene;Acc:101166210])

HSP 1 Score: 48.1358 bits (113), Expect = 8.815e-7
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIADQTTSAGNSNNPAHSTQQNQYNYP 311
            ++    VN + IQ++LDEN  L+  I E  Q+ +  E  +  + LH+NL+YLATIAD   ++ +   PA +   N  + P
Sbjct:   10 LRGKAKVNQETIQRLLDENDQLVRCITEYMQKGRAVECVQYQQILHRNLVYLATIAD---ASPDGMTPASNVSTNDASTP 86
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Medaka
Match: ss18l2 (SS18 like 2 [Source:NCBI gene;Acc:101166210])

HSP 1 Score: 47.3654 bits (111), Expect = 2.722e-6
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 3 
Query:   78 IKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIAD 242
            ++    VN + IQ++LDEN  L+  I E  Q+ +  E  +  + LH+NL+YLATIAD
Sbjct:   10 LRGKAKVNQETIQRLLDENDQLVRCITEYMQKGRAVECVQYQQILHRNLVYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Medaka
Match: ss18l2 (SS18 like 2 [Source:NCBI gene;Acc:101166210])

HSP 1 Score: 46.595 bits (109), Expect = 3.979e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:   96 VNSQFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIAD 242
            VN + IQ++LDEN  L+  I E  Q+ +  E  +  + LH+NL+YLATIAD
Sbjct:   16 VNQETIQRLLDENDQLVRCITEYMQKGRAVECVQYQQILHRNLVYLATIAD 66
[Close]
BLAST of Calcium-responsive transactivator vs. Ensembl Medaka
Match: SS18L1 (SS18L1 subunit of BAF chromatin remodeling complex [Source:NCBI gene;Acc:101174593])

HSP 1 Score: 46.9802 bits (110), Expect = 4.242e-6
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:  105 QFIQKILDENVGLIHAIIEKQQQNQEAE--ELLKSLHKNLIYLATIADQTTSAGNSNNPAHST 287
            Q IQK+LDEN  LI  I++ Q + ++AE  +  + LH+NL+YLATIA        SN   HST
Sbjct:   19 QTIQKMLDENHHLIQCIMDYQSKGKKAECTQYQQILHRNLVYLATIA-------GSNQNLHST 74
[Close]
BLAST of Calcium-responsive transactivator vs. Planmine SMEST
Match: SMESG000026642.1 (SMESG000026642.1)

HSP 1 Score: 461.84 bits (1187), Expect = 5.677e-158
Identity = 281/290 (96.90%), Postives = 286/290 (98.62%), Query Frame = 2 
Query:  824 IILFNVSVADIVEKKPQPVVEDPYNKESHGKSDSGGPGAYEMXXXXXXXXXXXXXPNHHIAVHKNVDIDKECCPVSQNSDLPKDGANANNSEYGQKFEEPVSTVAPHIGNSNIKTDMPPPSQPIGMHQDKGPMQYPGNQRIMYPAGVPAPSYNQYNPHFEQQNSKFYPQNIYPQQSPYNYQGIYNPYQPVAPPSAAPTHYNQHMMNSPLXXXXXXXXXXXXIDQLPQAPKDASLPPQMHPPNPLYPPNTVXXXXXXXXXXXXXXXXXXXXMKSQISESMPATGQNPNMSE 1693
            +++  ++  DIVEKKPQPVVEDPYNKESHGKSDSGGPGAYEMERESEKSSRSGREPNHHIAVHKNVDIDKECCPVSQNSDLPKDGANANNSEYGQKFEEPVSTVAPHIGNSNIKTDMPPPSQPIGMHQDKGPMQYPGNQRIMYPAGVPAPSYNQYNPHFEQQNSKFYPQNIYPQQSPYNYQGIYNPYQPVAPPSAAPTHYNQHMMNSPLYPQYPGYYPQPGIDQLPQAPKDASLPPQMHPPNPLYPPNTVSQSMYPPHQPPPQSQPNPVPMKSQISESMPATGQNPNMSE
Sbjct:  126 MVMAPIATIDIVEKKPQPVVEDPYNKESHGKSDSGGPGAYEMERESEKSSRSGREPNHHIAVHKNVDIDKECCPVSQNSDLPKDGANANNSEYGQKFEEPVSTVAPHIGNSNIKTDMPPPSQPIGMHQDKGPMQYPGNQRIMYPAGVPAPSYNQYNPHFEQQNSKFYPQNIYPQQSPYNYQGIYNPYQPVAPPSAAPTHYNQHMMNSPLYPQYPGYYPQPGIDQLPQAPKDASLPPQMHPPNPLYPPNTVSQSMYPPHQPPPQSQPNPVPMKSQISESMPATGQNPNMSE 415

HSP 2 Score: 241.891 bits (616), Expect = 5.129e-73
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 3 
Query:   42 MANVNCFPVNNVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQEAEELLKSLHKNLIYLATIADQTTSAGNSNNPAHSTQQNQYNYPQATVSHSTIQXXXXXXXXXXXSTQPIPSQYVTQSSMVMAPIATI 443
            MANVNCFPVNNVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQEAEELLKSLHKNLIYLATIADQTTSAGNSNNPAHSTQQNQYNYPQATVSHSTIQNVPNNNYPPNVSTQPIPSQYVTQSSMVMAPIATI
Sbjct:    1 MANVNCFPVNNVIKPDQPVNSQFIQKILDENVGLIHAIIEKQQQNQEAEELLKSLHKNLIYLATIADQTTSAGNSNNPAHSTQQNQYNYPQATVSHSTIQNVPNNNYPPNVSTQPIPSQYVTQSSMVMAPIATI 134
The following BLAST results are available for this feature:
BLAST of Calcium-responsive transactivator vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
SS18L22.676e-642.62SS18 like 2 [Source:HGNC Symbol;Acc:HGNC:15593][more]
SS18L22.676e-642.62SS18 like 2 [Source:HGNC Symbol;Acc:HGNC:15593][more]
SS18L14.412e-652.94SS18L1 subunit of BAF chromatin remodeling complex... [more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG105554.644e-650.00gene:FBgn0030034 transcript:FBtr0071174[more]
CG105554.644e-650.00gene:FBgn0030034 transcript:FBtr0343353[more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ss18l23.948e-641.82ss18, like 2 [Source:ZFIN;Acc:ZDB-GENE-050417-268][more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Ss18l22.071e-742.19SS18, nBAF chromatin remodeling complex subunit li... [more]
Ss18l18.099e-650.98SS18, nBAF chromatin remodeling complex subunit li... [more]
back to top
BLAST of Calcium-responsive transactivator vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9D174|S18L2_MOUSE1.449e-642.19SS18-like protein 2 OS=Mus musculus OX=10090 GN=Ss... [more]
back to top
BLAST of Calcium-responsive transactivator vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A095A0712.149e-843.00Calcium-responsive transactivator OS=Schistosoma h... [more]
A0A0R3SZM32.854e-860.66Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A183N5D42.908e-843.00Uncharacterized protein OS=Schistosoma margrebowie... [more]
C1LNB03.178e-850.82SSXT domain-containing protein OS=Schistosoma japo... [more]
C1L8D33.342e-850.82Calcium-responsive transactivator OS=Schistosoma j... [more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ss18l29.396e-638.98SS18 like 2 [Source:NCBI gene;Acc:103043527][more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO392189.516e-746.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Calcium-responsive transactivator vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ss18l28.815e-735.00SS18 like 2 [Source:NCBI gene;Acc:101166210][more]
ss18l22.722e-642.11SS18 like 2 [Source:NCBI gene;Acc:101166210][more]
ss18l23.979e-647.06SS18 like 2 [Source:NCBI gene;Acc:101166210][more]
SS18L14.242e-646.03SS18L1 subunit of BAF chromatin remodeling complex... [more]
back to top
BLAST of Calcium-responsive transactivator vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000026642.15.677e-15896.90SMESG000026642.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016152 ID=SMED30016152|Name=Calcium-responsive transactivator|organism=Schmidtea mediterranea sexual|type=transcript|length=2002bp
GATTTGTCAAATTAAAATTTTTGAATTTATATGTTATAATAATGGCTAAT
GTAAACTGTTTTCCAGTAAATAATGTTATAAAACCTGACCAGCCTGTAAA
TTCTCAATTTATTCAGAAAATATTAGATGAAAATGTTGGTCTTATACATG
CAATTATTGAAAAACAACAACAAAATCAAGAAGCGGAAGAATTATTAAAA
AGTTTACATAAAAATTTAATTTACTTGGCAACAATTGCTGATCAAACAAC
TTCTGCTGGAAATTCAAATAATCCTGCTCATTCAACTCAGCAGAATCAAT
ACAACTATCCTCAAGCTACAGTTTCACACTCAACAATTCAAAACGTTCCA
AATAATAATTATCCTCCAAATGTTTCTACTCAACCTATTCCTAGTCAATA
TGTAACCCAATCTTCAATGGTAATGGCCCCGATCGCCACAATAGGTATAT
ATTTCTTAATTGTTTAATTTTCAATTATTTTTTAAATTGAAATTATAAAG
TGATAATTTTAAATCAATAGTTTTCTGTTGATATATTAACTAAAATCTAT
TTCGTTTACACAGAGAACGCATATATAAAATAATAAATTTGTCTGTTTTT
GGGATTCGATTATCATTTCAAACAGAATTTCTTGACGAAATGAGGTTAAA
TTTATTCGATTTTTAGGTGTATCGAAAAGGCAGACTAATTTTAATTTATT
TTTTAAATTCTGCTCATTCCAAATAAATGCCAATCAAGTTTCAGTTCTTA
TATGGAATTTTGGGGATAATTAATTGGATTCAACACTATAAATAGGAGAA
AATTACTCTCGATTTGCTTATTGATTATTCTATTTAACGTCTCCGTTGCA
GACATCGTGGAAAAGAAACCGCAACCGGTGGTTGAGGACCCGTATAATAA
AGAAAGCCATGGGAAATCGGACTCGGGTGGGCCGGGAGCATATGAAATGG
AAAGGGAATCGGAGAAATCGTCTCGTTCTGGTCGGGAGCCAAATCACCAT
ATAGCGGTCCATAAAAATGTCGATATTGACAAGGAATGTTGCCCAGTGTC
CCAGAATTCAGATCTGCCGAAGGATGGAGCCAATGCCAACAATAGCGAAT
ATGGACAAAAATTCGAGGAACCAGTTTCGACAGTGGCGCCTCATATCGGG
AATTCCAATATCAAAACAGACATGCCTCCGCCGTCGCAGCCGATCGGGAT
GCATCAGGACAAAGGACCAATGCAGTATCCTGGCAACCAAAGGATCATGT
ATCCCGCTGGGGTGCCGGCACCGAGTTACAATCAGTACAACCCTCATTTT
GAGCAGCAGAATAGCAAATTTTACCCCCAGAATATTTATCCCCAACAATC
TCCGTACAATTACCAAGGAATCTACAACCCGTACCAGCCGGTCGCGCCTC
CATCGGCGGCACCGACGCATTATAACCAGCATATGATGAACTCACCTCTC
TATCCTCAATATCCTGGATATTATCCTCAGCCGGGCATCGACCAGTTGCC
CCAAGCACCGAAGGATGCCAGCTTGCCTCCTCAAATGCACCCACCAAATC
CGCTATATCCTCCAAACACTGTTTCTCAATCCATGTATCCTCCACATCAG
CCGCCACCGCAGTCACAGCCAAATCCAGTTCCGATGAAGTCGCAAATCTC
CGAATCGATGCCGGCAACCGGCCAGAATCCGAACATGTCTGAGTAATATC
GGCGGAAGTGATAATTCAGCAGGTAACGGATCCAGGTGTAAATAGATCCC
GCATGTGTGTGTAAATGTGCCGTTTATTTGCCGCATATAATATCTATTGC
TCGCATTAGCTTGGCATGCTCTTAGTGTCTTTGTTGCATTTCCTATTTAT
TACAACTGTTTATTTACGATTATTTTTCATTCCAGACGGCATCAGAATTG
CTCCTTTTGACACGAGTTTTGGTTGCTATGCCATTTCAGATTCGTTTCAT
GATTGAATTGGGTGACATTGTTGTGGTGTTTTGATTGAATATATTATTCG
CG
back to top

protein sequence of SMED30016152-orf-1

>SMED30016152-orf-1 ID=SMED30016152-orf-1|Name=SMED30016152-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=155bp
FVKLKFLNLYVIIMANVNCFPVNNVIKPDQPVNSQFIQKILDENVGLIHA
IIEKQQQNQEAEELLKSLHKNLIYLATIADQTTSAGNSNNPAHSTQQNQY
NYPQATVSHSTIQNVPNNNYPPNVSTQPIPSQYVTQSSMVMAPIATIGIY
FLIV*
back to top

protein sequence of SMED30016152-orf-2

>SMED30016152-orf-2 ID=SMED30016152-orf-2|Name=SMED30016152-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=250bp
MERESEKSSRSGREPNHHIAVHKNVDIDKECCPVSQNSDLPKDGANANNS
EYGQKFEEPVSTVAPHIGNSNIKTDMPPPSQPIGMHQDKGPMQYPGNQRI
MYPAGVPAPSYNQYNPHFEQQNSKFYPQNIYPQQSPYNYQGIYNPYQPVA
PPSAAPTHYNQHMMNSPLYPQYPGYYPQPGIDQLPQAPKDASLPPQMHPP
NPLYPPNTVSQSMYPPHQPPPQSQPNPVPMKSQISESMPATGQNPNMSE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:1903508positive regulation of nucleic acid-templated transcription
GO:1903506regulation of nucleic acid-templated transcription
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR007726SS18_fam
Vocabulary: molecular function
TermDefinition
GO:0003713transcription coactivator activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..206