Phosphorylated adapter RNA export protein

Overview
NamePhosphorylated adapter RNA export protein
Smed IDSMED30016121
Length (bp)1167
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Phosphorylated adapter RNA export protein (SMED30016121) t-SNE clustered cells

Violin plots show distribution of expression levels for Phosphorylated adapter RNA export protein (SMED30016121) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Phosphorylated adapter RNA export protein (SMED30016121) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Phosphorylated adapter RNA export protein (SMED30016121) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016121

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016121h1SMcG0011758 SmedASXL_014100SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30016121h1SMcG0011758 SmedASXL_014100SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30016121h1SMcG0011758 dd_Smed_v4_11764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016121h1SMcG0011758 dd_Smed_v4_11764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30016121h1SMcG0011758 dd_Smed_v4_11764_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Human
Match: PHAX (phosphorylated adaptor for RNA export [Source:HGNC Symbol;Acc:HGNC:10241])

HSP 1 Score: 91.6633 bits (226), Expect = 8.671e-20
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIK----------------EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            K+ N+IWG V+Q++  D    + G+   +  + RS +S    Y + +      + HTK      +E+     K   KE    + + K +KR   D   N P  N K                EI+  L EPK DL+ +   I+G  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF
Sbjct:  112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLK-RKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIF 308
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Celegans
Match: Y71H2B.2 (pep chromosome:WBcel235:III:2623170:2627771:1 gene:WBGene00022192.1 transcript:Y71H2B.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y71H2B.2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.498e-9
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:  620 EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            ++A  + E   D + K    +G +  ++    T++IE+ GG+   DGSRRR+PGGVF+ L K  + +S E K  IF
Sbjct:  203 QMAAAMGEKDPDTVKKITNAIGSELSIKLFNETKEIEQNGGMKTADGSRRRTPGGVFITLFKMDSSVSREIKDGIF 278
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Match: Phax (gene:FBgn0033380 transcript:FBtr0088569)

HSP 1 Score: 90.5077 bits (223), Expect = 6.657e-20
Identity = 67/222 (30.18%), Postives = 111/222 (50.00%), Query Frame = 2 
Query:  281 PINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESY------------TVKRNESNRKRNHTKSFSHRNNEFHKKDTKP--------PIKERVVIRNYDKTKK----------RNHIDINP---NNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            P + E   +   FK+ N +W + +Q++ L E+++ C V +    R+VE+Y            T+KR  SN   +  +  SH  ++  +  ++P         +K R   R+   T            R+ +D+N     +P+    E+A  L E K +LL +   +LG+D CLE    T+ IE  GG+++ +G RRR+PGGVFL LIK   +I+ E +K+IF
Sbjct:    6 PTDAEMQPNRARFKKYN-VWASALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSEDGGEC-SHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIF 225
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Match: Phax (gene:FBgn0033380 transcript:FBtr0088568)

HSP 1 Score: 90.8929 bits (224), Expect = 1.155e-19
Identity = 67/222 (30.18%), Postives = 111/222 (50.00%), Query Frame = 2 
Query:  281 PINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESY------------TVKRNESNRKRNHTKSFSHRNNEFHKKDTKP--------PIKERVVIRNYDKTKK----------RNHIDINP---NNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            P + E   +   FK+ N +W + +Q++ L E+++ C V +    R+VE+Y            T+KR  SN   +  +  SH  ++  +  ++P         +K R   R+   T            R+ +D+N     +P+    E+A  L E K +LL +   +LG+D CLE    T+ IE  GG+++ +G RRR+PGGVFL LIK   +I+ E +K+IF
Sbjct:  102 PTDAEMQPNRARFKKYN-VWASALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSEDGGEC-SHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIF 321
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Zebrafish
Match: phax (phosphorylated adaptor for RNA export [Source:ZFIN;Acc:ZDB-GENE-040822-42])

HSP 1 Score: 86.6557 bits (213), Expect = 2.270e-18
Identity = 66/200 (33.00%), Postives = 99/200 (49.50%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQD---EILDESLKKCGVEKKNVKRSVES----YTVKRNESNRKRNH------------TKSFSHRNNEFHKKDT----KPPIKERVVIRNYDKTKKRNHIDINPNNPAQN-IKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            ++ N+IWG+VVQ+   E +   L   G+E      S +S    Y   R    ++R+              + +  +  +  K  +    K P KER+  R     K R   +I  ++P +  I EIA  L EPK DL+ +   ++G  K +E L  T  IE+ GGL  +DGSRRR+PGGV+LNL+K +  IS    K+IF
Sbjct:   96 RKVNNIWGSVVQEQSQEAVAAELGIMGMEGAVSMSSRQSETYNYVFARKMMAKERDEEEEGLKSTLDSELEGYMQQGGQDQKDSSHLKRKRPAKERLGPRAEMDLKGR--YEIKEDDPEERVIDEIAHRLMEPKKDLIERVVRVIGNKKAIELLSETATIEQSGGLYTVDGSRRRTPGGVYLNLLKNTPSISHGQVKEIF 293
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Xenopus
Match: ezh1 (enhancer of zeste 1 polycomb repressive complex 2 subunit [Source:Xenbase;Acc:XB-GENE-1010736])

HSP 1 Score: 83.9593 bits (206), Expect = 3.206e-17
Identity = 58/193 (30.05%), Postives = 97/193 (50.26%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV----EKKNVKRSVESYT---VKRNESNRKRNHTKSFSHRNNEFHKKDT-------------KPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            N++WG V+Q++  +    + G+     + ++ R  E+Y     ++     ++          +E+ ++D              K PIKER+  R     K R  I    ++  +   EIA  L EPK DL+ +    LG  K +E L  T ++E  GGL +++GSRRR+PGGV+LNL+K +  I+S+  K+IF
Sbjct:  121 NNVWGAVLQEQTQEAVATELGIMDMEGQLDMSRQSETYNYILARKLMEKTEKEEELKLDKELDEYMQEDKESAPKEENGHLKRKRPIKERLGERLEMDYKGRYEI-TEADSEDKVSDEIAHRLREPKKDLIERVVKTLGTKKAIELLMETAEVEHNGGLFILNGSRRRTPGGVYLNLLKNTPSITSDQVKEIF 312
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839])

HSP 1 Score: 98.5969 bits (244), Expect = 2.284e-22
Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            K+ N+IWG V+Q++  D    + G+   + ++ RS +S T      K+      + +TK      +E+   D KP                P+++R+  R     K R  I    + P +   EIA  L EPK DL+ +   ILG  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF           NQ+ Y N  A
Sbjct:  102 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 312
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839])

HSP 1 Score: 98.2117 bits (243), Expect = 2.317e-22
Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            K+ N+IWG V+Q++  D    + G+   + ++ RS +S T      K+      + +TK      +E+   D KP                P+++R+  R     K R  I    + P +   EIA  L EPK DL+ +   ILG  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF           NQ+ Y N  A
Sbjct:   80 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 290
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839])

HSP 1 Score: 57.3806 bits (137), Expect = 6.947e-9
Identity = 55/195 (28.21%), Postives = 85/195 (43.59%), Query Frame = 2 
Query:  251 KEEPF----ENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVM 754
            K EPF       KT +N          K+ N+IWG V+Q++  D    + G+   + ++ RS +S T      K+      + +TK      +E+   D KP                P+++R+  R     K R  I    + P +   EIA  L EPK DL+ +   ILG  K +E L  T ++E+ GGL +M
Sbjct:   66 KPEPFPFGPSGQKTALN--------GGKKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIM 251
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q63068|PHAX_RAT (Phosphorylated adapter RNA export protein OS=Rattus norvegicus OX=10116 GN=Phax PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.050e-22
Identity = 73/219 (33.33%), Postives = 109/219 (49.77%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKK------RNHIDIN---------PNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            K+ N+IWG V+Q++  D    + G+   +  + RS +S T      K+      + +TK      +E+   D KP  KE    + + K K+       N +++N          ++P +   EIA  L EPK DL+ +   ILG  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF           NQ+ Y N  A
Sbjct:  102 KKVNNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEEENGQGHLKRKRPVRDRLGNRVEMNYKGRYDITEEDSPEKVADEIAFRLQEPKKDLIARVVTILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYI--------ENQKEYENKKA 312
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q9JJT9|PHAX_MOUSE (Phosphorylated adapter RNA export protein OS=Mus musculus OX=10090 GN=Phax PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.598e-21
Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            K+ N+IWG V+Q++  D    + G+   + ++ RS +S T      K+      + +TK      +E+   D KP                P+++R+  R     K R  I    + P +   EIA  L EPK DL+ +   ILG  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF           NQ+ Y N  A
Sbjct:  102 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 312
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q9H814|PHAX_HUMAN (Phosphorylated adapter RNA export protein OS=Homo sapiens OX=9606 GN=PHAX PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.164e-19
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIK----------------EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            K+ N+IWG V+Q++  D    + G+   +  + RS +S    Y + +      + HTK      +E+     K   KE    + + K +KR   D   N P  N K                EI+  L EPK DL+ +   I+G  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF
Sbjct:  112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLK-RKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIF 308
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q3MHI4|PHAX_BOVIN (Phosphorylated adapter RNA export protein OS=Bos taurus OX=9913 GN=PHAX PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.165e-19
Identity = 78/250 (31.20%), Postives = 116/250 (46.40%), Query Frame = 2 
Query:  251 KEEPFE----NIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHK--KDTKP--------------PIKERVVIR---NYDKTKKRNHIDINPNNPAQNIK-EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            K EPF+    + K PI           K+ N+IW  V+Q++  D    + G+   +  + RS +S    Y + +      + HTK       E+    K T P              P+K+RV  R   NY     +   +I  ++  + +  EI+  L EPK DL+ +   I+G  K +E L  T ++E+ GGL +M+GSRRR+PGGVFLNL+K +  IS E  K IF           NQ+ Y N  A
Sbjct:   93 KPEPFQFDQSSQKPPI--------AGRKKVNNIWSAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLKRESQEHTKELDKELEEYMHGGKKTGPKEEENGQGHPKRKRPVKDRVGDRLEMNY-----KGRYEITEDDSQERVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFY--------LENQKEYENKKA 321
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BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q5ZLY0|PHAX_CHICK (Phosphorylated adapter RNA export protein OS=Gallus gallus OX=9031 GN=PHAX PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.119e-16
Identity = 70/242 (28.93%), Postives = 112/242 (46.28%), Query Frame = 2 
Query:  257 EPFENIKTPINMEGLTDN-VAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910
            EPF     P+N        +  K+ N+IWG V+Q++  D    + G+     ++ RS +S T      K+     ++   ++     +E+   D K                  +K+R+  R   K K R  I    ++  +   EIA  L EPK DL+ +   I+G  K +E L  T ++E+ GGL +++G+RRR+PGGV+LNL+K +  I  E  K+IF           NQ+ Y N  A
Sbjct:   99 EPF-----PLNQSHAKQTALGGKKVNNIWGMVLQEQNQDAVATELGILGMDGSIDRSRQSETYNYLLAKKLMKEAQQKEAETLDKELDEYMHDDKKTLPAEEENGQGFLKRKRSVKDRLGERQEMKYKGRYEI-TEEDSEEKVADEIAYRLCEPKKDLIARVVKIIGKRKAIELLMETAEVEQNGGLFIVNGTRRRTPGGVYLNLLKNTPSIKEEQIKEIFYL--------ENQKEYENKKA 326
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BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A3Q0KF19 (RNA_GG_bind domain-containing protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.071e-29
Identity = 76/177 (42.94%), Postives = 105/177 (59.32%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRN-ESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850
            N +W NV+ +  LD++L    V EK +  R VESY V  + +  RK     +    +    KK +   IK+R+    +D+   R+HID+  ++P   + E I  +L EP  DL+ +   ILG+ + LEF YLTEDIE  GGL +MDGSRRRSPGGV+LNLIK S  +  E+KK IFL
Sbjct:   53 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTTEVCTQPELSTRILKK-SNLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKSIFL 228
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: G4VIW3 (RNA_GG_bind domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_043070 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.921e-29
Identity = 76/177 (42.94%), Postives = 105/177 (59.32%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRN-ESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850
            N +W NV+ +  LD++L    V EK +  R VESY V  + +  RK     +    +    KK +   IK+R+    +D+   R+HID+  ++P   + E I  +L EP  DL+ +   ILG+ + LEF YLTEDIE  GGL +MDGSRRRSPGGV+LNLIK S  +  E+KK IFL
Sbjct:   65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTTEVCTQPELSTRILKK-SNLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKSIFL 240
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A183PF50 (RNA_GG_bind domain-containing protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS12986 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.754e-28
Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850
            N +W NV+ +  LD++L    V EK +  R VESY V  +  + ++          +    K +   IK+R+    +D+   R+HID+  ++P   + E I  +L EP  DL+ +   ILG+ + LEF YLTEDIE  GGL +MDGSRRRSPGGV+LNLIK S  +  E+KK IFL
Sbjct:   65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A430Q4I6 (Phosphorylated adapter RNA export protein OS=Schistosoma bovis OX=6184 GN=DC041_0003069 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.922e-28
Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850
            N +W NV+ +  LD++L    V EK +  R VESY V  +  + ++          +    K +   IK+R+    +D+   R+HID+  ++P   + E I  +L EP  DL+ +   ILG+ + LEF YLTEDIE  GGL +MDGSRRRSPGGV+LNLIK S  +  E+KK IFL
Sbjct:   65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A095BVG3 (Phosphorylated adapter RNA export protein OS=Schistosoma haematobium OX=6185 GN=MS3_01090 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.150e-28
Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850
            N +W NV+ +  LD++L    V EK +  R VESY V  +  + ++          +    K +   IK+R+    +D+   R+HID+  ++P   + E I  +L EP  DL+ +   ILG+ + LEF YLTEDIE  GGL +MDGSRRRSPGGV+LNLIK S  +  E+KK IFL
Sbjct:   65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Cavefish
Match: phax (phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:103033737])

HSP 1 Score: 85.1149 bits (209), Expect = 7.594e-18
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 2 
Query:  329 NSIWGNVVQDEILDESLKKCGV--EKKNVK---RSVESYT-------VKRNESNRKRNHTKSFSHRNNEFHKKDT-----------KPPIKERVVIRNYDKTKKRNHIDINPNNPAQN-IKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            N+IWG+VVQ++  D    + G+   +  +    R  E+Y        +++ +  + +       ++  ++ + +T           K   K+R+  R     K R   +I P +P +  I EIA  L EPK +L+ +   ++G  K +E L  T  IE+ GGL  +DGSRRR+PGGV+LNL+K +  I+ ++ K+IF
Sbjct:  117 NNIWGSVVQEQNQDAVAAELGIFGVEGGISMDNRQSETYNYILARKLIEKEKQEQAQGMEAMLDNQLEQYMQHETPEEQSDCHLKRKRSAKDRLGARAEMDLKGR--YEITPEDPEEKVIDEIAHRLMEPKKELIERVVKVIGAKKAIELLSETATIEQNGGLYTVDGSRRRTPGGVYLNLLKNTPSITHDEVKEIF 311
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Sea Lamprey
Match: phax (phosphorylated adaptor for RNA export [Source:ZFIN;Acc:ZDB-GENE-040822-42])

HSP 1 Score: 88.5817 bits (218), Expect = 1.125e-19
Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 2 
Query:  320 KRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSV-----ESYTVKRNESNRKRNHTKSFSHRNNEFH---------------------KKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPY 895
            ++ N++WG V+Q++  D   ++ G+       S+     ESY     +  R++  T+       E                       +K  + P+KER+  R       R   ++  ++PA  I +EIA  L E K DL+ +   I+G+ K LE LY T +IE  GGL++++G+RRR+PGGV+LNL+K +  I+ +  K+IF         + NQR Y
Sbjct:  127 RKVNNVWGAVLQEQCQDAVAQEIGILGVEADLSIRTRDSESYNYMLAKKIRQKEETQELLKLEAELDGYMHNASNEDLKDEANAQSRVQKRKRRPVKERLGERAEMDFVGR--YELKEDDPADRIAEEIAYRLREAKEDLIVRVVNIIGVKKSLELLYETAEIERNGGLMIVNGTRRRTPGGVYLNLMKSTPSITQDQIKEIF--------HEENQRDY 335
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Nematostella
Match: EDO33080 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST76])

HSP 1 Score: 57.7658 bits (138), Expect = 2.090e-9
Identity = 32/90 (35.56%), Postives = 52/90 (57.78%), Query Frame = 2 
Query:  581 IDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847
            + I  N+  ++I KE+A  L E K DL+++    +G  K L+    T +I+E+GG+   +  RRR+ GGVFL L+K     + E  K+I+
Sbjct:  214 LTITENDSTEDIAKELADRLEEAKTDLIHRVVKCIGHTKALQLFEETLEIQEQGGIPTANKDRRRTSGGVFLYLLKAKEYATKEQVKEIY 303
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Medaka
Match: phax (phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:101155249])

HSP 1 Score: 88.9669 bits (219), Expect = 4.476e-19
Identity = 74/227 (32.60%), Postives = 108/227 (47.58%), Query Frame = 2 
Query:  308 NVAFKRPNSIWGNVVQDEILDESLKKCGV----EKKNVKRSVESY--TVKRNESNRKRNHTKSFSHR------------------NNEFHKKDTKP--PIKERVV-IRNYDKTKKRNHIDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLP-----HSFQKNSQHNQR 889
                +R N+IWG+VVQ++  D    + GV          RSVE+Y   + R    + R   K  +                    +NE    D K   PIKER+  I   D    +   +I+ ++P  ++  EIA  L EPK DL+ +   ++G  K +E L  T  +EE GG+  MDGSRRR+PGGV+LNL+K +  IS    +KIF       H  +K +Q  +R
Sbjct:  104 GAGSRRVNNIWGSVVQEQCQDAVTAELGVFGMEGVSTSSRSVETYNFVLARKMMEKDREVEKLITQEGKVNTLDAELEAYMNGQGSNEGAGGDAKRKRPIKERLGPIAEMDI---KGRYEISEDDPDDSVVDEIAYRLQEPKKDLIERVVKVVGKKKAIELLGETATLEESGGVYTMDGSRRRTPGGVYLNLLKNTPSISKSQIRKIFFEEQQKDHKSKKAAQKRRR 327
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Match: SMESG000070992.1 (SMESG000070992.1)

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 314/334 (94.01%), Postives = 315/334 (94.31%), Query Frame = 2 
Query:   47 MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSLSHYKDLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIAQPNGTVIEIQLAKPXXXXXXXXXXXXXXXLMKDEIKDDELEDGEIP 1048
            MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDD                   DLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQ+NSQHNQRPYRNPIAQPNGTVIEIQLAKPEIIKEIIQQQIHSEILMKDEIKDDELEDGEIP
Sbjct:    1 MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDD-------------------DLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQRNSQHNQRPYRNPIAQPNGTVIEIQLAKPEIIKEIIQQQIHSEILMKDEIKDDELEDGEIP 315
[Close]
BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Match: SMESG000002740.1 (SMESG000002740.1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.764e-17
Identity = 95/355 (26.76%), Postives = 139/355 (39.15%), Query Frame = 2 
Query:   65 KRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSLSHYKDLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVK---------------RNESNRKRNHT--KSFSHRN---------NEFHKKDTKPPIKERVVIR----------------------NYD---KTKKRNHIDINPNNPAQNI----------KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHS---------FQKNSQHNQRPYRNPIAQPN 919
            K  VPGLE+ S+D D  ++++F +        Y  ++ N   SLS   D  I +  + N                          K  N +W N+++ ++LD+ +   G+ K  V R VESY +                RN S R+ N T  K   H +         N   KK  K    E +VI                       ++D   K    N +  + N     I          + IA  L E  +DL+ +C   LGL+K   FL  T+ IE  GG+   DGSR R+ GGVF  LIK   +I  E K++IFL ++         + K+ + NQ   RN    PN
Sbjct:    6 KFNVPGLEEISTDEDSDDDILFLQESAKKIDNYETISIND--SLSESDDDIIFVSFEKNR-------------------------KHLNEVWRNIIECDLLDQRIHDIGLRKFRVNRDVESYDLPSYKLKRYKRTNLCRFRNNSYRRHNRTPRKEIIHISSDEDERPVCNYRQKKGMKTDKIEEIVIEDDDENEEKDNSDACEVISDSDTDFDEGPKLSTWNKLITHLNQDQFQIEFQSGRETTARRIASELKEQNIDLIERCLIYLGLEKSQTFLEATKRIESNGGMPTKDGSRLRTAGGVFFTLIKSDRNIEQEVKEQIFLDNNDTIDESESLWWKSVEINQYQIRNKKKIPN 333
The following BLAST results are available for this feature:
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
PHAX8.671e-2033.84phosphorylated adaptor for RNA export [Source:HGNC... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Y71H2B.21.498e-936.84pep chromosome:WBcel235:III:2623170:2627771:1 gene... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Phax6.657e-2030.18gene:FBgn0033380 transcript:FBtr0088569[more]
Phax1.155e-1930.18gene:FBgn0033380 transcript:FBtr0088568[more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
phax2.270e-1833.00phosphorylated adaptor for RNA export [Source:ZFIN... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ezh13.206e-1730.05enhancer of zeste 1 polycomb repressive complex 2 ... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Phax2.284e-2233.18phosphorylated adaptor for RNA export [Source:MGI ... [more]
Phax2.317e-2233.18phosphorylated adaptor for RNA export [Source:MGI ... [more]
Phax6.947e-928.21phosphorylated adaptor for RNA export [Source:MGI ... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q63068|PHAX_RAT2.050e-2233.33Phosphorylated adapter RNA export protein OS=Rattu... [more]
sp|Q9JJT9|PHAX_MOUSE1.598e-2133.18Phosphorylated adapter RNA export protein OS=Mus m... [more]
sp|Q9H814|PHAX_HUMAN4.164e-1933.84Phosphorylated adapter RNA export protein OS=Homo ... [more]
sp|Q3MHI4|PHAX_BOVIN8.165e-1931.20Phosphorylated adapter RNA export protein OS=Bos t... [more]
sp|Q5ZLY0|PHAX_CHICK2.119e-1628.93Phosphorylated adapter RNA export protein OS=Gallu... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3Q0KF195.071e-2942.94RNA_GG_bind domain-containing protein OS=Schistoso... [more]
G4VIW37.921e-2942.94RNA_GG_bind domain-containing protein OS=Schistoso... [more]
A0A183PF501.754e-2841.48RNA_GG_bind domain-containing protein OS=Schistoso... [more]
A0A430Q4I61.922e-2841.48Phosphorylated adapter RNA export protein OS=Schis... [more]
A0A095BVG32.150e-2841.48Phosphorylated adapter RNA export protein OS=Schis... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
phax7.594e-1829.95phosphorylated adaptor for RNA export [Source:NCBI... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
phax1.125e-1929.68phosphorylated adaptor for RNA export [Source:ZFIN... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO330802.090e-935.56Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
phax4.476e-1932.60phosphorylated adaptor for RNA export [Source:NCBI... [more]
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BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000070992.10.000e+094.01SMESG000070992.1[more]
SMESG000002740.13.764e-1726.76SMESG000002740.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016121 ID=SMED30016121|Name=Phosphorylated adapter RNA export protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1167bp
GTTTTAATAATACAAACTTATTTCAAAGTTTCTTCAAAAATACATTATGA
CCAAGACATTTGACAAACGGACAGTTCCTGGGCTTGAAGATTTTTCATCT
GACAGTGATGATGGTAATGAAGTAGTGTTTAAAAAATCTCGCTGTGATGA
TGGTACACAATATTTTGTATTGGCTAATAATTCTAAATTTTCTCTATCGC
ATTATAAAGATTTAGAAATCGAATTAGAAGTAAAAAATAATGAATTTCTC
AAAGAAGAACCATTTGAAAATATCAAGACACCAATCAATATGGAAGGATT
AACTGATAATGTTGCTTTTAAACGACCAAATTCTATATGGGGCAATGTTG
TTCAAGATGAAATTTTAGATGAAAGTTTGAAGAAATGTGGTGTAGAAAAA
AAAAATGTTAAACGTTCTGTTGAAAGCTACACTGTTAAAAGAAACGAAAG
CAATCGCAAACGTAATCACACCAAAAGTTTTTCACATCGAAATAATGAAT
TCCACAAGAAAGATACAAAACCACCAATAAAAGAAAGAGTCGTAATAAGA
AATTATGATAAAACTAAGAAAAGAAATCATATAGATATAAATCCAAATAA
TCCTGCACAGAATATAAAAGAAATAGCTCGAATTTTATCCGAACCGAAAG
TGGATTTGTTAAACAAATGTTACTGCATCCTTGGCCTAGACAAATGCCTG
GAATTTCTTTATCTCACCGAAGATATTGAAGAACGTGGAGGTTTACTTGT
CATGGACGGATCGAGAAGGCGTTCTCCGGGAGGAGTGTTTTTAAATCTGA
TAAAGGAATCTGCTGATATAAGTAGTGAGGATAAAAAAAAAATTTTTCTC
CCCCATAGTTTCCAAAAAAACAGCCAACACAATCAACGGCCTTATCGGAA
TCCAATTGCACAACCAAACGGCACTGTTATAGAAATTCAGTTGGCCAAAC
CGGAGATCATCAAAGAAATTATTCAACAACAAATTCATTCAGAAATCTTG
ATGAAAGACGAGATTAAAGACGACGAATTAGAAGATGGAGAAATTCCGTA
GAATTTTTTTGCTGCATTTAAGATTAATTTTTACTGTATATATAAATAAA
TCGATCCACTGGGGATCTCTATCGAATAATTGTATTAATAAATCTCGGTC
TTTTTTCTTTGAAAAAA
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protein sequence of SMED30016121-orf-1

>SMED30016121-orf-1 ID=SMED30016121-orf-1|Name=SMED30016121-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=335bp
MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSL
SHYKDLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGN
VVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNN
EFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEP
KVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLN
LIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIAQPNGTVIEIQLA
KPEIIKEIIQQQIHSEILMKDEIKDDELEDGEIP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006408snRNA export from nucleus
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR038092PHAX_RNA-binding_sf
IPR039047PHAX
IPR019385PHAX_RNA-binding_domain
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038092Phosphorylated adapter RNA export protein, RNA-binding domain superfamilyGENE3DG3DSA:1.10.10.1440coord: 182..281
e-value: 1.7E-27
score: 97.3
IPR019385Phosphorylated adapter RNA export protein, RNA-binding domainPFAMPF10258RNA_GG_bindcoord: 191..267
e-value: 6.6E-27
score: 93.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
IPR039047Phosphorylated adapter RNA export proteinPANTHERPTHR13135CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26coord: 16..270