Phosphorylated adapter RNA export protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30016121 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Human
Match: PHAX (phosphorylated adaptor for RNA export [Source:HGNC Symbol;Acc:HGNC:10241]) HSP 1 Score: 91.6633 bits (226), Expect = 8.671e-20 Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIK----------------EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 K+ N+IWG V+Q++ D + G+ + + RS +S Y + + + HTK +E+ K KE + + K +KR D N P N K EI+ L EPK DL+ + I+G K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF Sbjct: 112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLK-RKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIF 308
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Celegans
Match: Y71H2B.2 (pep chromosome:WBcel235:III:2623170:2627771:1 gene:WBGene00022192.1 transcript:Y71H2B.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y71H2B.2) HSP 1 Score: 59.3066 bits (142), Expect = 1.498e-9 Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 2 Query: 620 EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 ++A + E D + K +G + ++ T++IE+ GG+ DGSRRR+PGGVF+ L K + +S E K IF Sbjct: 203 QMAAAMGEKDPDTVKKITNAIGSELSIKLFNETKEIEQNGGMKTADGSRRRTPGGVFITLFKMDSSVSREIKDGIF 278
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Match: Phax (gene:FBgn0033380 transcript:FBtr0088569) HSP 1 Score: 90.5077 bits (223), Expect = 6.657e-20 Identity = 67/222 (30.18%), Postives = 111/222 (50.00%), Query Frame = 2 Query: 281 PINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESY------------TVKRNESNRKRNHTKSFSHRNNEFHKKDTKP--------PIKERVVIRNYDKTKK----------RNHIDINP---NNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 P + E + FK+ N +W + +Q++ L E+++ C V + R+VE+Y T+KR SN + + SH ++ + ++P +K R R+ T R+ +D+N +P+ E+A L E K +LL + +LG+D CLE T+ IE GG+++ +G RRR+PGGVFL LIK +I+ E +K+IF Sbjct: 6 PTDAEMQPNRARFKKYN-VWASALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSEDGGEC-SHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIF 225
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Match: Phax (gene:FBgn0033380 transcript:FBtr0088568) HSP 1 Score: 90.8929 bits (224), Expect = 1.155e-19 Identity = 67/222 (30.18%), Postives = 111/222 (50.00%), Query Frame = 2 Query: 281 PINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESY------------TVKRNESNRKRNHTKSFSHRNNEFHKKDTKP--------PIKERVVIRNYDKTKK----------RNHIDINP---NNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 P + E + FK+ N +W + +Q++ L E+++ C V + R+VE+Y T+KR SN + + SH ++ + ++P +K R R+ T R+ +D+N +P+ E+A L E K +LL + +LG+D CLE T+ IE GG+++ +G RRR+PGGVFL LIK +I+ E +K+IF Sbjct: 102 PTDAEMQPNRARFKKYN-VWASALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSEDGGEC-SHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIF 321
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Zebrafish
Match: phax (phosphorylated adaptor for RNA export [Source:ZFIN;Acc:ZDB-GENE-040822-42]) HSP 1 Score: 86.6557 bits (213), Expect = 2.270e-18 Identity = 66/200 (33.00%), Postives = 99/200 (49.50%), Query Frame = 2 Query: 320 KRPNSIWGNVVQD---EILDESLKKCGVEKKNVKRSVES----YTVKRNESNRKRNH------------TKSFSHRNNEFHKKDT----KPPIKERVVIRNYDKTKKRNHIDINPNNPAQN-IKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 ++ N+IWG+VVQ+ E + L G+E S +S Y R ++R+ + + + + K + K P KER+ R K R +I ++P + I EIA L EPK DL+ + ++G K +E L T IE+ GGL +DGSRRR+PGGV+LNL+K + IS K+IF Sbjct: 96 RKVNNIWGSVVQEQSQEAVAAELGIMGMEGAVSMSSRQSETYNYVFARKMMAKERDEEEEGLKSTLDSELEGYMQQGGQDQKDSSHLKRKRPAKERLGPRAEMDLKGR--YEIKEDDPEERVIDEIAHRLMEPKKDLIERVVRVIGNKKAIELLSETATIEQSGGLYTVDGSRRRTPGGVYLNLLKNTPSISHGQVKEIF 293
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Xenopus
Match: ezh1 (enhancer of zeste 1 polycomb repressive complex 2 subunit [Source:Xenbase;Acc:XB-GENE-1010736]) HSP 1 Score: 83.9593 bits (206), Expect = 3.206e-17 Identity = 58/193 (30.05%), Postives = 97/193 (50.26%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV----EKKNVKRSVESYT---VKRNESNRKRNHTKSFSHRNNEFHKKDT-------------KPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 N++WG V+Q++ + + G+ + ++ R E+Y ++ ++ +E+ ++D K PIKER+ R K R I ++ + EIA L EPK DL+ + LG K +E L T ++E GGL +++GSRRR+PGGV+LNL+K + I+S+ K+IF Sbjct: 121 NNVWGAVLQEQTQEAVATELGIMDMEGQLDMSRQSETYNYILARKLMEKTEKEEELKLDKELDEYMQEDKESAPKEENGHLKRKRPIKERLGERLEMDYKGRYEI-TEADSEDKVSDEIAHRLREPKKDLIERVVKTLGTKKAIELLMETAEVEHNGGLFILNGSRRRTPGGVYLNLLKNTPSITSDQVKEIF 312
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839]) HSP 1 Score: 98.5969 bits (244), Expect = 2.284e-22 Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 K+ N+IWG V+Q++ D + G+ + ++ RS +S T K+ + +TK +E+ D KP P+++R+ R K R I + P + EIA L EPK DL+ + ILG K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF NQ+ Y N A Sbjct: 102 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 312
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839]) HSP 1 Score: 98.2117 bits (243), Expect = 2.317e-22 Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 K+ N+IWG V+Q++ D + G+ + ++ RS +S T K+ + +TK +E+ D KP P+++R+ R K R I + P + EIA L EPK DL+ + ILG K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF NQ+ Y N A Sbjct: 80 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 290
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Match: Phax (phosphorylated adaptor for RNA export [Source:MGI Symbol;Acc:MGI:1891839]) HSP 1 Score: 57.3806 bits (137), Expect = 6.947e-9 Identity = 55/195 (28.21%), Postives = 85/195 (43.59%), Query Frame = 2 Query: 251 KEEPF----ENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVM 754 K EPF KT +N K+ N+IWG V+Q++ D + G+ + ++ RS +S T K+ + +TK +E+ D KP P+++R+ R K R I + P + EIA L EPK DL+ + ILG K +E L T ++E+ GGL +M Sbjct: 66 KPEPFPFGPSGQKTALN--------GGKKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIM 251
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q63068|PHAX_RAT (Phosphorylated adapter RNA export protein OS=Rattus norvegicus OX=10116 GN=Phax PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 2.050e-22 Identity = 73/219 (33.33%), Postives = 109/219 (49.77%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKK------RNHIDIN---------PNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 K+ N+IWG V+Q++ D + G+ + + RS +S T K+ + +TK +E+ D KP KE + + K K+ N +++N ++P + EIA L EPK DL+ + ILG K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF NQ+ Y N A Sbjct: 102 KKVNNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEEENGQGHLKRKRPVRDRLGNRVEMNYKGRYDITEEDSPEKVADEIAFRLQEPKKDLIARVVTILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYI--------ENQKEYENKKA 312
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q9JJT9|PHAX_MOUSE (Phosphorylated adapter RNA export protein OS=Mus musculus OX=10090 GN=Phax PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.598e-21 Identity = 73/220 (33.18%), Postives = 107/220 (48.64%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 K+ N+IWG V+Q++ D + G+ + ++ RS +S T K+ + +TK +E+ D KP P+++R+ R K R I + P + EIA L EPK DL+ + ILG K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF NQ+ Y N A Sbjct: 102 KKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSETYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRYEI-TEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYV--------ENQKEYENKKA 312
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q9H814|PHAX_HUMAN (Phosphorylated adapter RNA export protein OS=Homo sapiens OX=9606 GN=PHAX PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.164e-19 Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIK----------------EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 K+ N+IWG V+Q++ D + G+ + + RS +S Y + + + HTK +E+ K KE + + K +KR D N P N K EI+ L EPK DL+ + I+G K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF Sbjct: 112 KKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMHGGKKMGSKEEENGQGHLK-RKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIF 308
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q3MHI4|PHAX_BOVIN (Phosphorylated adapter RNA export protein OS=Bos taurus OX=9913 GN=PHAX PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 8.165e-19 Identity = 78/250 (31.20%), Postives = 116/250 (46.40%), Query Frame = 2 Query: 251 KEEPFE----NIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVES----YTVKRNESNRKRNHTKSFSHRNNEFHK--KDTKP--------------PIKERVVIR---NYDKTKKRNHIDINPNNPAQNIK-EIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 K EPF+ + K PI K+ N+IW V+Q++ D + G+ + + RS +S Y + + + HTK E+ K T P P+K+RV R NY + +I ++ + + EI+ L EPK DL+ + I+G K +E L T ++E+ GGL +M+GSRRR+PGGVFLNL+K + IS E K IF NQ+ Y N A Sbjct: 93 KPEPFQFDQSSQKPPI--------AGRKKVNNIWSAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLKRESQEHTKELDKELEEYMHGGKKTGPKEEENGQGHPKRKRPVKDRVGDRLEMNY-----KGRYEITEDDSQERVADEISFRLQEPKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFY--------LENQKEYENKKA 321
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Match: sp|Q5ZLY0|PHAX_CHICK (Phosphorylated adapter RNA export protein OS=Gallus gallus OX=9031 GN=PHAX PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.119e-16 Identity = 70/242 (28.93%), Postives = 112/242 (46.28%), Query Frame = 2 Query: 257 EPFENIKTPINMEGLTDN-VAFKRPNSIWGNVVQDEILDESLKKCGV--EKKNVKRSVESYT-----VKRNESNRKRNHTKSFSHRNNEFHKKDTKP----------------PIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIA 910 EPF P+N + K+ N+IWG V+Q++ D + G+ ++ RS +S T K+ ++ ++ +E+ D K +K+R+ R K K R I ++ + EIA L EPK DL+ + I+G K +E L T ++E+ GGL +++G+RRR+PGGV+LNL+K + I E K+IF NQ+ Y N A Sbjct: 99 EPF-----PLNQSHAKQTALGGKKVNNIWGMVLQEQNQDAVATELGILGMDGSIDRSRQSETYNYLLAKKLMKEAQQKEAETLDKELDEYMHDDKKTLPAEEENGQGFLKRKRSVKDRLGERQEMKYKGRYEI-TEEDSEEKVADEIAYRLCEPKKDLIARVVKIIGKRKAIELLMETAEVEQNGGLFIVNGTRRRTPGGVYLNLLKNTPSIKEEQIKEIFYL--------ENQKEYENKKA 326
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A3Q0KF19 (RNA_GG_bind domain-containing protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 5.071e-29 Identity = 76/177 (42.94%), Postives = 105/177 (59.32%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRN-ESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850 N +W NV+ + LD++L V EK + R VESY V + + RK + + KK + IK+R+ +D+ R+HID+ ++P + E I +L EP DL+ + ILG+ + LEF YLTEDIE GGL +MDGSRRRSPGGV+LNLIK S + E+KK IFL Sbjct: 53 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTTEVCTQPELSTRILKK-SNLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKSIFL 228
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: G4VIW3 (RNA_GG_bind domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_043070 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 7.921e-29 Identity = 76/177 (42.94%), Postives = 105/177 (59.32%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRN-ESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850 N +W NV+ + LD++L V EK + R VESY V + + RK + + KK + IK+R+ +D+ R+HID+ ++P + E I +L EP DL+ + ILG+ + LEF YLTEDIE GGL +MDGSRRRSPGGV+LNLIK S + E+KK IFL Sbjct: 65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTTEVCTQPELSTRILKK-SNLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKSIFL 240
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A183PF50 (RNA_GG_bind domain-containing protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS12986 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.754e-28 Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850 N +W NV+ + LD++L V EK + R VESY V + + ++ + K + IK+R+ +D+ R+HID+ ++P + E I +L EP DL+ + ILG+ + LEF YLTEDIE GGL +MDGSRRRSPGGV+LNLIK S + E+KK IFL Sbjct: 65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A430Q4I6 (Phosphorylated adapter RNA export protein OS=Schistosoma bovis OX=6184 GN=DC041_0003069 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.922e-28 Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850 N +W NV+ + LD++L V EK + R VESY V + + ++ + K + IK+R+ +D+ R+HID+ ++P + E I +L EP DL+ + ILG+ + LEF YLTEDIE GGL +MDGSRRRSPGGV+LNLIK S + E+KK IFL Sbjct: 65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Match: A0A095BVG3 (Phosphorylated adapter RNA export protein OS=Schistosoma haematobium OX=6185 GN=MS3_01090 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.150e-28 Identity = 73/176 (41.48%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV-EKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKE-IARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFL 850 N +W NV+ + LD++L V EK + R VESY V + + ++ + K + IK+R+ +D+ R+HID+ ++P + E I +L EP DL+ + ILG+ + LEF YLTEDIE GGL +MDGSRRRSPGGV+LNLIK S + E+KK IFL Sbjct: 65 NCVWVNVINEYKLDDALSVAHVHEKCDSSRGVESYLVNTDTDDERKTIEVCTQPELSTRILKKSDLSIKQRLGPLLWDQEVSRSHIDVTFDSPPDLVAETITNLLKEPNEDLIKRTVDILGVQRALEFYYLTEDIENNGGLYLMDGSRRRSPGGVYLNLIKHSYSVKKEEKKLIFL 240
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Cavefish
Match: phax (phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:103033737]) HSP 1 Score: 85.1149 bits (209), Expect = 7.594e-18 Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 2 Query: 329 NSIWGNVVQDEILDESLKKCGV--EKKNVK---RSVESYT-------VKRNESNRKRNHTKSFSHRNNEFHKKDT-----------KPPIKERVVIRNYDKTKKRNHIDINPNNPAQN-IKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 N+IWG+VVQ++ D + G+ + + R E+Y +++ + + + ++ ++ + +T K K+R+ R K R +I P +P + I EIA L EPK +L+ + ++G K +E L T IE+ GGL +DGSRRR+PGGV+LNL+K + I+ ++ K+IF Sbjct: 117 NNIWGSVVQEQNQDAVAAELGIFGVEGGISMDNRQSETYNYILARKLIEKEKQEQAQGMEAMLDNQLEQYMQHETPEEQSDCHLKRKRSAKDRLGARAEMDLKGR--YEITPEDPEEKVIDEIAHRLMEPKKELIERVVKVIGAKKAIELLSETATIEQNGGLYTVDGSRRRTPGGVYLNLLKNTPSITHDEVKEIF 311
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Sea Lamprey
Match: phax (phosphorylated adaptor for RNA export [Source:ZFIN;Acc:ZDB-GENE-040822-42]) HSP 1 Score: 88.5817 bits (218), Expect = 1.125e-19 Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 2 Query: 320 KRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSV-----ESYTVKRNESNRKRNHTKSFSHRNNEFH---------------------KKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPY 895 ++ N++WG V+Q++ D ++ G+ S+ ESY + R++ T+ E +K + P+KER+ R R ++ ++PA I +EIA L E K DL+ + I+G+ K LE LY T +IE GGL++++G+RRR+PGGV+LNL+K + I+ + K+IF + NQR Y Sbjct: 127 RKVNNVWGAVLQEQCQDAVAQEIGILGVEADLSIRTRDSESYNYMLAKKIRQKEETQELLKLEAELDGYMHNASNEDLKDEANAQSRVQKRKRRPVKERLGERAEMDFVGR--YELKEDDPADRIAEEIAYRLREAKEDLIVRVVNIIGVKKSLELLYETAEIERNGGLMIVNGTRRRTPGGVYLNLMKSTPSITQDQIKEIF--------HEENQRDY 335
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Nematostella
Match: EDO33080 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST76]) HSP 1 Score: 57.7658 bits (138), Expect = 2.090e-9 Identity = 32/90 (35.56%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 581 IDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIF 847 + I N+ ++I KE+A L E K DL+++ +G K L+ T +I+E+GG+ + RRR+ GGVFL L+K + E K+I+ Sbjct: 214 LTITENDSTEDIAKELADRLEEAKTDLIHRVVKCIGHTKALQLFEETLEIQEQGGIPTANKDRRRTSGGVFLYLLKAKEYATKEQVKEIY 303
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Medaka
Match: phax (phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:101155249]) HSP 1 Score: 88.9669 bits (219), Expect = 4.476e-19 Identity = 74/227 (32.60%), Postives = 108/227 (47.58%), Query Frame = 2 Query: 308 NVAFKRPNSIWGNVVQDEILDESLKKCGV----EKKNVKRSVESY--TVKRNESNRKRNHTKSFSHR------------------NNEFHKKDTKP--PIKERVV-IRNYDKTKKRNHIDINPNNPAQNI-KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLP-----HSFQKNSQHNQR 889 +R N+IWG+VVQ++ D + GV RSVE+Y + R + R K + +NE D K PIKER+ I D + +I+ ++P ++ EIA L EPK DL+ + ++G K +E L T +EE GG+ MDGSRRR+PGGV+LNL+K + IS +KIF H +K +Q +R Sbjct: 104 GAGSRRVNNIWGSVVQEQCQDAVTAELGVFGMEGVSTSSRSVETYNFVLARKMMEKDREVEKLITQEGKVNTLDAELEAYMNGQGSNEGAGGDAKRKRPIKERLGPIAEMDI---KGRYEISEDDPDDSVVDEIAYRLQEPKKDLIERVVKVVGKKKAIELLGETATLEESGGVYTMDGSRRRTPGGVYLNLLKNTPSISKSQIRKIFFEEQQKDHKSKKAAQKRRR 327
BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Match: SMESG000070992.1 (SMESG000070992.1) HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0 Identity = 314/334 (94.01%), Postives = 315/334 (94.31%), Query Frame = 2 Query: 47 MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSLSHYKDLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQKNSQHNQRPYRNPIAQPNGTVIEIQLAKPXXXXXXXXXXXXXXXLMKDEIKDDELEDGEIP 1048 MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDD DLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQ+NSQHNQRPYRNPIAQPNGTVIEIQLAKPEIIKEIIQQQIHSEILMKDEIKDDELEDGEIP Sbjct: 1 MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDD-------------------DLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVKRNESNRKRNHTKSFSHRNNEFHKKDTKPPIKERVVIRNYDKTKKRNHIDINPNNPAQNIKEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHSFQRNSQHNQRPYRNPIAQPNGTVIEIQLAKPEIIKEIIQQQIHSEILMKDEIKDDELEDGEIP 315
BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Match: SMESG000002740.1 (SMESG000002740.1) HSP 1 Score: 82.8037 bits (203), Expect = 3.764e-17 Identity = 95/355 (26.76%), Postives = 139/355 (39.15%), Query Frame = 2 Query: 65 KRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSLSHYKDLEIELEVKNNEFLKEEPFENIKTPINMEGLTDNVAFKRPNSIWGNVVQDEILDESLKKCGVEKKNVKRSVESYTVK---------------RNESNRKRNHT--KSFSHRN---------NEFHKKDTKPPIKERVVIR----------------------NYD---KTKKRNHIDINPNNPAQNI----------KEIARILSEPKVDLLNKCYCILGLDKCLEFLYLTEDIEERGGLLVMDGSRRRSPGGVFLNLIKESADISSEDKKKIFLPHS---------FQKNSQHNQRPYRNPIAQPN 919 K VPGLE+ S+D D ++++F + Y ++ N SLS D I + + N K N +W N+++ ++LD+ + G+ K V R VESY + RN S R+ N T K H + N KK K E +VI ++D K N + + N I + IA L E +DL+ +C LGL+K FL T+ IE GG+ DGSR R+ GGVF LIK +I E K++IFL ++ + K+ + NQ RN PN Sbjct: 6 KFNVPGLEEISTDEDSDDDILFLQESAKKIDNYETISIND--SLSESDDDIIFVSFEKNR-------------------------KHLNEVWRNIIECDLLDQRIHDIGLRKFRVNRDVESYDLPSYKLKRYKRTNLCRFRNNSYRRHNRTPRKEIIHISSDEDERPVCNYRQKKGMKTDKIEEIVIEDDDENEEKDNSDACEVISDSDTDFDEGPKLSTWNKLITHLNQDQFQIEFQSGRETTARRIASELKEQNIDLIERCLIYLGLEKSQTFLEATKRIESNGGMPTKDGSRLRTAGGVFFTLIKSDRNIEQEVKEQIFLDNNDTIDESESLWWKSVEINQYQIRNKKKIPN 333 The following BLAST results are available for this feature:
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of Phosphorylated adapter RNA export protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Phosphorylated adapter RNA export protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Phosphorylated adapter RNA export protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30016121 ID=SMED30016121|Name=Phosphorylated adapter RNA export protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1167bpback to top protein sequence of SMED30016121-orf-1 >SMED30016121-orf-1 ID=SMED30016121-orf-1|Name=SMED30016121-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=335bp MTKTFDKRTVPGLEDFSSDSDDGNEVVFKKSRCDDGTQYFVLANNSKFSLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|