Nuclear transport factor 2-like export factor 2

Overview
NameNuclear transport factor 2-like export factor 2
Smed IDSMED30016103
Length (bp)534
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Nuclear transport factor 2-like export factor 2 (SMED30016103) t-SNE clustered cells

Violin plots show distribution of expression levels for Nuclear transport factor 2-like export factor 2 (SMED30016103) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Nuclear transport factor 2-like export factor 2 (SMED30016103) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Nuclear transport factor 2-like export factor 2 (SMED30016103) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30016103

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30016103h1SMcG0012264 SmedASXL_001735SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Match: NXT2 (nuclear transport factor 2 like export factor 2 [Source:HGNC Symbol;Acc:HGNC:18151])

HSP 1 Score: 82.0333 bits (201), Expect = 8.965e-20
Identity = 45/129 (34.88%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V +  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:   13 QACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 140
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Match: NXT2 (nuclear transport factor 2 like export factor 2 [Source:HGNC Symbol;Acc:HGNC:18151])

HSP 1 Score: 81.6481 bits (200), Expect = 4.011e-19
Identity = 45/129 (34.88%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V +  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:   68 QACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 195
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Match: NXT1 (nuclear transport factor 2 like export factor 1 [Source:HGNC Symbol;Acc:HGNC:15913])

HSP 1 Score: 80.1073 bits (196), Expect = 5.718e-19
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YYTTMDK R  ++  +  + TL WNGN V   E +  FF+ LP S  QI  +  QP +   +P   +V + I G V ++  +K + F+   +L      ++ +WKI S  FRF
Sbjct:   12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Match: NXT2 (nuclear transport factor 2 like export factor 2 [Source:HGNC Symbol;Acc:HGNC:18151])

HSP 1 Score: 67.0106 bits (162), Expect = 2.929e-14
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 1 
Query:  103 MDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            MDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V +  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:    1 MDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 112
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Match: NXT2 (nuclear transport factor 2 like export factor 2 [Source:HGNC Symbol;Acc:HGNC:18151])

HSP 1 Score: 67.0106 bits (162), Expect = 2.929e-14
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 1 
Query:  103 MDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            MDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V +  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:    1 MDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 112
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Celegans
Match: nxt-1 (NTF2-related export protein [Source:UniProtKB/Swiss-Prot;Acc:Q9U757])

HSP 1 Score: 59.6918 bits (143), Expect = 1.063e-11
Identity = 36/126 (28.57%), Postives = 60/126 (47.62%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFK-SVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLN 426
            E    ++K +D YY  MD+ R  I   +T      WNGN +   + I  F  +LP ++  I SL AQ     V+ +    + + + G V  D  SK      +L+ ++   DG +K+ S  FR+++
Sbjct:   15 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVE---DGKYKVKSDRFRYVD 137
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Celegans
Match: nxt-1 (NTF2-related export protein [Source:UniProtKB/Swiss-Prot;Acc:Q9U757])

HSP 1 Score: 58.151 bits (139), Expect = 4.006e-11
Identity = 36/125 (28.80%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFK-SVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLN 426
            E    ++K +D YY  MD+ R  I   +T      WNGN      I  F  +LP ++  I SL AQ     V+ +    + + + G V  D  SK      +L+ ++   DG +K+ S  FR+++
Sbjct:   15 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVE---DGKYKVKSDRFRYVD 131
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Fly
Match: Nxt1 (gene:FBgn0028411 transcript:FBtr0072241)

HSP 1 Score: 57.3806 bits (137), Expect = 7.869e-11
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:   40 DSDWSEASEVAEKLIDK----YYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQP-TNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRF 420
            DSD     E   +  D     YY ++D  R  I   +  + TL+WNGN     + I+++F  LP S  Q+ +L AQP  +  VS +   + I  +G V + +Q   K F    IV  + ND  WK++S  +R 
Sbjct:    2 DSDLKAKVESCARTADTFTRLYYASVDNRRQQIGRLYLDNATLSWNGNGAIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYL-IMASGSVKFADQQLRK-FQQTFIVTAE-NDK-WKVVSDCYRM 130
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Zebrafish
Match: nxt2 (nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1])

HSP 1 Score: 68.1662 bits (165), Expect = 1.470e-14
Identity = 36/126 (28.57%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK---DKNDGLWKIISSTFRF 420
            ++   +E+ I+ YY  MDK R ++   +    TL WNGN V   E +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V ++   +     + L+  +   + +  +WKI S  FRF
Sbjct:   13 QSCRYSEEFINIYYECMDKKRRNLKRLYLDKATLVWNGNAVTGQEALGEFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVAAGSVKFEGNKQRFFNQNFLLTAQASPNSDQPVWKIASDCFRF 138
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Zebrafish
Match: nxt2 (nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1])

HSP 1 Score: 68.1662 bits (165), Expect = 1.470e-14
Identity = 36/126 (28.57%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK---DKNDGLWKIISSTFRF 420
            ++   +E+ I+ YY  MDK R ++   +    TL WNGN V   E +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V ++   +     + L+  +   + +  +WKI S  FRF
Sbjct:   13 QSCRYSEEFINIYYECMDKKRRNLKRLYLDKATLVWNGNAVTGQEALGEFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVAAGSVKFEGNKQRFFNQNFLLTAQASPNSDQPVWKIASDCFRF 138
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Zebrafish
Match: nxt2 (nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1])

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-14
Identity = 36/126 (28.57%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK----DKNDGLWKIISSTFR 417
            ++   +E+ I+ YY  MDK R ++   +    TL WNGN V   E +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V ++  +K + F+   ++      + +  +WKI S  FR
Sbjct:   13 QSCRYSEEFINIYYECMDKKRRNLKRLYLDKATLVWNGNAVTGQEALGEFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVAAGSVKFEG-NKQRFFNQNFLLTAQASPNSDQPVWKIASDCFR 137
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Zebrafish
Match: nxt2 (nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1])

HSP 1 Score: 58.9214 bits (141), Expect = 4.642e-11
Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKN 381
            ++   +E+ I+ YY  MDK R ++   +    TL WNGN V   E +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V ++  +K + F+   ++   K+
Sbjct:   13 QSCRYSEEFINIYYECMDKKRRNLKRLYLDKATLVWNGNAVTGQEALGEFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVAAGSVKFEG-NKQRFFNQNFLLTYGKS 121
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Xenopus
Match: spred2 (sprouty related, EVH1 domain containing 2 [Source:Xenbase;Acc:XB-GENE-485591])

HSP 1 Score: 63.929 bits (154), Expect = 6.957e-13
Identity = 36/128 (28.12%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:   43 SDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDK-NDGLWKIISSTFRF 420
            +D   A   AE+ ++ YY T+DK R  +   +T + TL WNGN +   + +  FF+ LP S  Q+      P +   +   K+V +   G V ++         + L+ +     + +WKI S  FRF
Sbjct:    8 TDVDLACRAAEEFVNLYYETIDKRRRQLIKLYTDTATLVWNGNPISGQDSLVEFFEMLPSSEFQVNMFDCHPVHEQATQGQKTVLVVAHGIVKFEGNKHHYFNQNFLLSLHATPTNSVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Match: Nxt1 (NTF2-related export protein 1 [Source:MGI Symbol;Acc:MGI:1929619])

HSP 1 Score: 79.7221 bits (195), Expect = 5.294e-19
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD-VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YYTTMDK R  ++  +  + TL WNGN V   E +  FF+ LP S  QI  +  QP +   +P   +V + I G V ++   +     + +L      ++ +WKI S  FRF
Sbjct:   12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Match: Nxt1 (NTF2-related export protein 1 [Source:MGI Symbol;Acc:MGI:1929619])

HSP 1 Score: 79.7221 bits (195), Expect = 5.294e-19
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD-VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YYTTMDK R  ++  +  + TL WNGN V   E +  FF+ LP S  QI  +  QP +   +P   +V + I G V ++   +     + +L      ++ +WKI S  FRF
Sbjct:   12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Match: Nxt2 (nuclear transport factor 2-like export factor 2 [Source:MGI Symbol;Acc:MGI:2147914])

HSP 1 Score: 78.9518 bits (193), Expect = 1.101e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFF+ LP S  QI  L  QP +   +    +V +  +G V +D  +K   F+   +L      N  +WKI S  FRF
Sbjct:   13 QACRAAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQCQTTVLVVTSGVVKFDG-NKQHFFNQNFLLTAQSTPNSTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Match: Nxt2 (nuclear transport factor 2-like export factor 2 [Source:MGI Symbol;Acc:MGI:2147914])

HSP 1 Score: 78.9518 bits (193), Expect = 1.101e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFF+ LP S  QI  L  QP +   +    +V +  +G V +D  +K   F+   +L      N  +WKI S  FRF
Sbjct:   13 QACRAAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQCQTTVLVVTSGVVKFDG-NKQHFFNQNFLLTAQSTPNSTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Match: Nxt2 (nuclear transport factor 2-like export factor 2 [Source:MGI Symbol;Acc:MGI:2147914])

HSP 1 Score: 78.1814 bits (191), Expect = 7.684e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFF+ LP S  QI  L  QP +   +    +V +  +G V +D  +K   F+   +L      N  +WKI S  FRF
Sbjct:   69 QACRAAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQCQTTVLVVTSGVVKFDG-NKQHFFNQNFLLTAQSTPNSTVWKIASDCFRF 192
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Match: sp|A6QNX3|NXT2_BOVIN (NTF2-related export protein 2 OS=Bos taurus OX=9913 GN=NXT2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.014e-19
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK-DKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFFD LP S  Q+  L  QP +   +    +V +  +G V +D   +     + L+  +   N+ +WKI S  FRF
Sbjct:   13 QACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNVVTGLEALANFFDMLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHYFNQNFLLTAQTTANNTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Match: sp|Q9NPJ8|NXT2_HUMAN (NTF2-related export protein 2 OS=Homo sapiens OX=9606 GN=NXT2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.305e-19
Identity = 45/129 (34.88%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V +  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:   13 QACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 140
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Match: sp|Q9UKK6|NXT1_HUMAN (NTF2-related export protein 1 OS=Homo sapiens OX=9606 GN=NXT1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.746e-18
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YYTTMDK R  ++  +  + TL WNGN V   E +  FF+ LP S  QI  +  QP +   +P   +V + I G V ++  +K + F+   +L      ++ +WKI S  FRF
Sbjct:   12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Match: sp|Q9QZV9|NXT1_MOUSE (NTF2-related export protein 1 OS=Mus musculus OX=10090 GN=Nxt1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.703e-18
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD-VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YYTTMDK R  ++  +  + TL WNGN V   E +  FF+ LP S  QI  +  QP +   +P   +V + I G V ++   +     + +L      ++ +WKI S  FRF
Sbjct:   12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Match: sp|Q3UNA4|NXT2_MOUSE (NTF2-related export protein 2 OS=Mus musculus OX=10090 GN=Nxt2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.700e-18
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFF+ LP S  QI  L  QP +   +    +V +  +G V +D  +K   F+   +L      N  +WKI S  FRF
Sbjct:   13 QACRAAEEFVNIYYETMDKRRHALVRLYLDKATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQCQTTVLVVTSGVVKFDG-NKQHFFNQNFLLTAQSTPNSTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Match: A0A2Y9EPI5 (NTF2-related export protein 2 OS=Physeter macrocephalus OX=9755 GN=LOC102978168 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.549e-17
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKD-KNDGLWKIISSTFRF 420
            +A + AE+ ++ YY TMDK R +I   +    TL WNGN V  LE + NFFD LP S  Q+  L  QP +   +    +V +  +G V +D   +     + L+  +   N+ +WKI S  FRF
Sbjct:   13 QACKAAEEFVNIYYETMDKRRRAITRLYLDKATLVWNGNAVTGLEALANFFDMLPSSEFQVNMLDCQPVHEQATQAQTTVLVVTSGTVKFDGNRQHYFNQNFLLTAQSTANNTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Match: A0A2Y9S015 (NTF2-related export protein 2-like OS=Physeter macrocephalus OX=9755 GN=LOC102976925 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.632e-17
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDK-NDGLWKIISSTFRF 420
            +A   AEK ++ YY TMDK R ++   +    TL WNGN+V  LE + NFFD LP S  Q+  L  QP +  V     +V +  +G V +D   +     + L+  +   N+ +WKI S  F F
Sbjct:   13 QACRAAEKFVNIYYETMDKRRQALTRLYLDKATLIWNGNFVTGLEALTNFFDMLPSSEFQVNMLDCQPVHEQVKQTQTTVLVVTSGTVKFDGNRQHYFKQNFLLTAQSTPNNIVWKIASDCFHF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Match: A0A340XQX0 (NTF2-related export protein 2 OS=Lipotes vexillifer OX=118797 GN=NXT2 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.754e-17
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRF 420
            +A   AE+ +  YY TMDK R ++   +    TL WNGN V  LE +  FFD+LP S  Q+  L  QP +   +    +V +  +G V +D   +     + L+  +   D +WKI S  FRF
Sbjct:   13 QACRAAEEFVSIYYETMDKRRQALTRLYLDKATLVWNGNVVTGLEALTKFFDTLPSSEFQVNMLDCQPVHEQATQSQATVLVVTSGTVKFDGNRQHYFNQNFLLTAQSTPDIVWKIASDCFRF 135
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Match: A0A452DKL9 (Nuclear transport factor 2 like export factor 2 OS=Capra hircus OX=9925 GN=NXT2 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.085e-17
Identity = 43/124 (34.68%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK-DKNDGLWKIISSTFRF 420
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  LE + NFFD LP S  Q+  L  QP +   +    +V +  +G V +D   +     + L+  +   N+ +WKI S  FRF
Sbjct:   13 QACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNVVTGLEALANFFDMLPSSEFQVNMLDCQPVHEQATQAQTTVLVVTSGTVKFDGNKQHYFNQNFLLTAQTTANNTVWKIASDCFRF 136
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Match: H2PWG9 (NXT2 isoform 1 OS=Pongo abelii OX=9601 GN=NXT2 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.907e-17
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHD--VLIVMKDKNDGLWKIISSTFRFLNGS 432
            +A   AE+ ++ YY TMDK R ++   +    TL WNGN V  L+ + NFFD+LP S  Q+  L  QP +   +    +V I  +G V +D  +K   F+   +L      N+ +WKI S  FRF + S
Sbjct:   13 QACRAAEEFVNIYYETMDKRRRALTRLYLDQATLIWNGNVVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLIVTSGTVKFDG-NKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWS 140
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Cavefish
Match: nxt2 (nuclear transport factor 2 like export factor 2 [Source:NCBI gene;Acc:103035937])

HSP 1 Score: 65.0846 bits (157), Expect = 1.389e-13
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK---DKNDGLWKIISSTFRF 420
            ++   +E+ ++ YY  MDK R ++   +    TL WNGN     + +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V +D   +     + L+  +   + +  +WKI S  FRF
Sbjct:   13 QSCRYSEEFVNIYYDCMDKKRRNLTRLYLDKATLVWNGNAFSGQDSLGEFFESLPSSEFQVHTLDCQPVHEQATQGQTTLLVVTAGLVKFDGNKQRYFNQNFLLTAQPSPNSDQPVWKIASDCFRF 138
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Nematostella
Match: EDO49593 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFE7])

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-15
Identity = 36/125 (28.80%), Postives = 62/125 (49.60%), Query Frame = 1 
Query:   58 ASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQA--LEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLN 426
            A+E  E   + YY T DK R  I+  ++ + T+ WNGN V+    ++  FF +LP S   + +L  QP +    P   ++ + + G V Y+         + L+ ++     +WK+ S  FRFL+
Sbjct:    9 AAEAGETFSNLYYETFDKRRHKISKLYSKNATVVWNGNAVKGGTEQLTEFFTNLPTSEHTLHTLDCQPVSEQAIPGQTTILVIVEGLVQYEGHKAKNFSQNFLLTVEGT---VWKVASDCFRFLD 130
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Medaka
Match: nxt2 (nuclear transport factor 2 like export factor 2 [Source:NCBI gene;Acc:101172743])

HSP 1 Score: 64.6994 bits (156), Expect = 2.215e-13
Identity = 35/126 (27.78%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   55 EASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALE-IQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMK---DKNDGLWKIISSTFRF 420
            ++   +E+ ++ YY  MDK R ++   +    TL WNGN V   E +  FF+SLP S  Q+ +L  QP +   +    ++ +   G V ++   +     + L+  +   + +  +WKI S  FRF
Sbjct:   13 QSCRYSEEFVNIYYDCMDKKRRNLIRLYLDKATLVWNGNAVSGQEALSAFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVTGGIVKFEGNKQRFFNQNFLLTAQATPNNDQPVWKIASDCFRF 138
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Planmine SMEST
Match: SMESG000004322.1 (SMESG000004322.1)

HSP 1 Score: 273.478 bits (698), Expect = 1.222e-95
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:   34 MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLNGS 432
            MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLNGS
Sbjct:    1 MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLNGS 133
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Planmine SMEST
Match: SMESG000004332.1 (SMESG000004332.1)

HSP 1 Score: 186.808 bits (473), Expect = 2.127e-61
Identity = 89/133 (66.92%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:   34 MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFLNGS 432
            M+DS+W+E+SEVAEK+IDKYY+ MD+ R SIN FFTPSGTL+WNG+ V + EIQ F+DSLP S+TQILS+SAQP +  VS EFKSV I+I GK+N+ N  KSK+FHD LIVMKD  D LWKI+SSTFRF++ S
Sbjct:    1 MDDSNWTESSEVAEKIIDKYYSNMDQNRISINSFFTPSGTLSWNGHLVNSPEIQIFYDSLPASKTQILSVSAQPISSIVSSEFKSVAIFIVGKINFANYPKSKIFHDNLIVMKDNTDELWKILSSTFRFISES 133
[Close]
BLAST of Nuclear transport factor 2-like export factor 2 vs. Planmine SMEST
Match: SMESG000047359.1 (SMESG000047359.1)

HSP 1 Score: 71.633 bits (174), Expect = 2.616e-16
Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:   34 MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQALEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQSKSKLFHDVLIVMKDKNDGLWKIISSTFRFL 423
            ME  +W +A+E+   +   YY  +D  R     FF+ S +L WNGN  +  +I+ F+  +P + T+I S SA P N  ++   K+V I + G V Y ++ + K+F +VLIV +  N+   +I+SS F F+
Sbjct:    1 MEVPNWMKAAEI---IAAHYYRALDNNRKQFFSFFSDSSSLNWNGNCFEGNDIEKFYGRIPKTNTKIYSYSALPINSSITDNEKTVIIKVVGHVKYQDRQR-KVFDEVLIV-EFTNENSIRILSSNFHFI 125
The following BLAST results are available for this feature:
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NXT28.965e-2034.88nuclear transport factor 2 like export factor 2 [S... [more]
NXT24.011e-1934.88nuclear transport factor 2 like export factor 2 [S... [more]
NXT15.718e-1934.40nuclear transport factor 2 like export factor 1 [S... [more]
NXT22.929e-1434.51nuclear transport factor 2 like export factor 2 [S... [more]
NXT22.929e-1434.51nuclear transport factor 2 like export factor 2 [S... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nxt-11.063e-1128.57NTF2-related export protein [Source:UniProtKB/Swi... [more]
nxt-14.006e-1128.80NTF2-related export protein [Source:UniProtKB/Swi... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Nxt17.869e-1131.58gene:FBgn0028411 transcript:FBtr0072241[more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
nxt21.470e-1428.57nuclear transport factor 2-like export factor 2 [S... [more]
nxt21.470e-1428.57nuclear transport factor 2-like export factor 2 [S... [more]
nxt27.568e-1428.57nuclear transport factor 2-like export factor 2 [S... [more]
nxt24.642e-1128.18nuclear transport factor 2-like export factor 2 [S... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
spred26.957e-1328.13sprouty related, EVH1 domain containing 2 [Source:... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Nxt15.294e-1933.06NTF2-related export protein 1 [Source:MGI Symbol;A... [more]
Nxt15.294e-1933.06NTF2-related export protein 1 [Source:MGI Symbol;A... [more]
Nxt21.101e-1836.00nuclear transport factor 2-like export factor 2 [S... [more]
Nxt21.101e-1836.00nuclear transport factor 2-like export factor 2 [S... [more]
Nxt27.684e-1836.00nuclear transport factor 2-like export factor 2 [S... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|A6QNX3|NXT2_BOVIN2.014e-1934.68NTF2-related export protein 2 OS=Bos taurus OX=991... [more]
sp|Q9NPJ8|NXT2_HUMAN4.305e-1934.88NTF2-related export protein 2 OS=Homo sapiens OX=9... [more]
sp|Q9UKK6|NXT1_HUMAN2.746e-1834.40NTF2-related export protein 1 OS=Homo sapiens OX=9... [more]
sp|Q9QZV9|NXT1_MOUSE3.703e-1833.06NTF2-related export protein 1 OS=Mus musculus OX=1... [more]
sp|Q3UNA4|NXT2_MOUSE7.700e-1836.00NTF2-related export protein 2 OS=Mus musculus OX=1... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2Y9EPI51.549e-1735.48NTF2-related export protein 2 OS=Physeter macrocep... [more]
A0A2Y9S0153.632e-1735.48NTF2-related export protein 2-like OS=Physeter mac... [more]
A0A340XQX03.754e-1734.15NTF2-related export protein 2 OS=Lipotes vexillife... [more]
A0A452DKL95.085e-1734.68Nuclear transport factor 2 like export factor 2 OS... [more]
H2PWG95.907e-1735.66NXT2 isoform 1 OS=Pongo abelii OX=9601 GN=NXT2 PE=... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nxt21.389e-1326.98nuclear transport factor 2 like export factor 2 [S... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO495931.002e-1528.80Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
nxt22.215e-1327.78nuclear transport factor 2 like export factor 2 [S... [more]
back to top
BLAST of Nuclear transport factor 2-like export factor 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000004322.11.222e-95100.00SMESG000004322.1[more]
SMESG000004332.12.127e-6166.92SMESG000004332.1[more]
SMESG000047359.12.616e-1634.62SMESG000047359.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016103 ID=SMED30016103|Name=Nuclear transport factor 2-like export factor 2|organism=Schmidtea mediterranea sexual|type=transcript|length=534bp
ATTAAATATTCATATTCAATATAAAAATCTTTTATGGAAGATTCAGATTG
GTCTGAAGCCTCTGAAGTTGCTGAGAAATTAATAGACAAATATTATACAA
CTATGGATAAAACGCGTTCTTCTATCAATTTATTTTTTACTCCATCTGGA
ACCCTTACATGGAATGGTAATTATGTACAAGCTTTAGAAATTCAAAATTT
TTTCGATTCTTTACCTGGTTCAAGAACTCAAATTTTGTCACTCTCTGCGC
AGCCAACAAATCCATTTGTGTCTCCTGAATTTAAATCTGTTCAAATTTAC
ATAACTGGTAAAGTAAATTACGATAATCAATCGAAAAGCAAGTTATTTCA
TGATGTCTTAATTGTGATGAAAGACAAAAACGATGGACTTTGGAAGATTA
TATCATCTACATTTCGTTTTTTGAACGGATCATAAAATATCTCTGTTGTA
CAATAAAGTTTCTATGAATTCTATATGTAGAATTTTTTATTAATTCTTGT
TTTTATTTTATTTTTGAAACATAATTTTTAATAT
back to top

protein sequence of SMED30016103-orf-1

>SMED30016103-orf-1 ID=SMED30016103-orf-1|Name=SMED30016103-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=134bp
MEDSDWSEASEVAEKLIDKYYTTMDKTRSSINLFFTPSGTLTWNGNYVQA
LEIQNFFDSLPGSRTQILSLSAQPTNPFVSPEFKSVQIYITGKVNYDNQS
KSKLFHDVLIVMKDKNDGLWKIISSTFRFLNGS*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR032710NTF2-like_dom_sf
IPR002075NTF2
IPR018222Nuclear_transport_factor_2_euk
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005634nucleus
GO:0005654nucleoplasm
GO:0005737cytoplasm
GO:0005829cytosol
GO:0048471perinuclear region of cytoplasm
Vocabulary: biological process
TermDefinition
GO:0006810transport
GO:0015031protein transport
GO:0051028mRNA transport
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002075Nuclear transport factor 2PFAMPF02136NTF2coord: 12..129
e-value: 1.1E-10
score: 42.1
NoneNo IPR availableGENE3DG3DSA:3.10.450.50coord: 2..132
e-value: 1.1E-25
score: 92.2
NoneNo IPR availablePANTHERPTHR12612NUCLEAR TRANSPORT FACTOR 2coord: 7..131
NoneNo IPR availablePANTHERPTHR12612:SF9NTF2-RELATED EXPORT PROTEIN 2coord: 7..131
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 12..129
score: 17.857
IPR032710NTF2-like domain superfamilySUPERFAMILYSSF54427NTF2-likecoord: 6..130