SMED30016072

Overview
NameSMED30016072
Smed IDSMED30016072
Length (bp)934
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016072 (SMED30016072) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016072 (SMED30016072) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016072 (SMED30016072) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016072 (SMED30016072) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016072

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30016072SMESG000064318.1 Contig2304newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016072SMESG000064318.1 Contig2304uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016072SMESG000052602.1 Contig2304newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016072SMESG000052602.1 Contig2304uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30016072SMESG000064318.1 dd_Smed_v4_10400_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30016072SMESG000064318.1 dd_Smed_v4_10400_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016072 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002840:7846..11909 -4605
Homology
[Close]
BLAST of SMED30016072 vs. TrEMBL
Match: A0A267H992 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig005923g1 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.957e-13
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTT------KLPESNTRDTLVSGTQSEMAVTK 798
            I++E  D +L R ++ P YG G+ PF IAVA ++L    ++ G+ +++L    NI LS+D G+I+GP  + L I   A GIK  Y +Y+IS   R+++KF      ++  TT      K P +   + L+SGT S  AV++
Sbjct:  108 IRREYQDKKLRRNLQSPMYGKGRTPFFIAVALFVLGGVLILLGVVVLLLRFHNNIMLSIDKGEIIGPLLISLGIASLAGGIKFLYDAYIISNNERNRIKFTSASDSLIQATTNRAGPVKAPPT---EMLMSGTVSANAVSR 245
[Close]
BLAST of SMED30016072 vs. TrEMBL
Match: A0A267EJ81 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig032634g1 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.359e-13
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTT------KLPESNTRDTLVSGTQSEMAVTK 798
            I++E  D +L R ++ P YG G+ PF IAVA ++L    ++ G+ +++L    NI LS+D G+I+GP  + L I   A GIK  Y +Y+IS   R+++KF      ++  TT      K P +   + L+SGT S  AV++
Sbjct:  108 IRREYQDKKLRRNLQSPMYGKGRTPFFIAVALFVLGSVLILLGVVVLLLRFHNNIMLSIDKGEIIGPLLISLGIASLAGGIKFLYDAYIISNNERNRIKFTSASDSLIQATTNRAGPVKAPPT---EMLMSGTVSANAVSR 245
[Close]
BLAST of SMED30016072 vs. TrEMBL
Match: A0A267E0J3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig007171g1 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.786e-13
Identity = 51/141 (36.17%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTT------KLPESNTRDTLVSGTQSEMAVTK 798
            I++E  D +L R ++ P YG G+ PF IAVA ++L    ++ G+ +++L    NI LS+D G+I+GP  + L I   A GIK  Y +Y+IS   R+++KF      ++  TT      K P +   + L+SGT S  AV++
Sbjct:  108 IRREYQDKKLRRNLQSPMYGKGRTPFFIAVALFVLGSVLILLGVVVLLLRFHNNIMLSIDKGEIIGPLLISLGIASLAGGIKFLYDAYVISNNERNRIKFTSASDSLIQATTNRAGPVKAPPT---EMLMSGTVSANAVSR 245
[Close]
BLAST of SMED30016072 vs. TrEMBL
Match: A0A267GI24 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015535g1 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.051e-12
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTT-----KLPESNTRDTLVSGTQSEMAVTK 798
            I+QE HD +L    + P YG G+ PFRI++A +++    ++ G+TL++L    NI LS+D G+I+GP  + + +   A G+K  Y +Y IS   R K+KF   D  ++S  T     K  ++   + LVSGT +  AV++
Sbjct:  107 IRQEYHDKKLRTNFQSPNYGRGRTPFRISIALFVVGGIIIMVGVTLLLLRFHNNIMLSVDKGEIIGPILIAIGVGAIAGGVKFCYDAYKISNSERQKIKFTAADQSLISARTMDSARKFKQA-PGEVLVSGTVTANAVSR 245
[Close]
BLAST of SMED30016072 vs. TrEMBL
Match: A0A267G8F9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015535g3 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.120e-12
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTT-----KLPESNTRDTLVSGTQSEMAVTK 798
            I+QE HD +L    + P YG G+ PFRI++A +++    ++ G+TL++L    NI LS+D G+I+GP  + + +   A G+K  Y +Y IS   R K+KF   D  ++S  T     K  ++   + LVSGT +  AV++
Sbjct:  107 IRQEYHDKKLRTNFQSPNYGRGRTPFRISIALFVVGGIIIMVGVTLLLLRFHNNIMLSVDKGEIIGPILIAIGVGAIAGGVKFCYDAYKISNSERQKIKFTAADQSLISARTMDSARKFKQA-PGEVLVSGTVTANAVSR 245
[Close]
BLAST of SMED30016072 vs. Planmine SMEST
Match: SMESG000064318.1 (SMESG000064318.1)

HSP 1 Score: 396.741 bits (1018), Expect = 9.303e-141
Identity = 222/254 (87.40%), Postives = 225/254 (88.58%), Query Frame = 1 
Query:   58 MSEFSHKNKLKQLKKDHSTSSSHNYQNDFHGNQSILSYNSTRSSNDILSSQPSFLSGEISIKSKDRDLATNFTNSAHVIGVTQSVRSLKCNMPXXXXXXXXXXXXXXXXXXXIQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKKYDQFSH 819
            MSEFSHKNKLKQLKKDHSTSSSHNYQNDFHGNQSILSYNSTRSSNDILSSQPSFLSGEISIKSKDRDLATNFTNSAHVIG++ +                            IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAFYILFLTFLITGLTLIVLTSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKKYDQFSH
Sbjct:    1 MSEFSHKNKLKQLKKDHSTSSSHNYQNDFHGNQSILSYNSTRSSNDILSSQPSFLSGEISIKSKDRDLATNFTNSAHVIGISYN----------------------------IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAFYILFLTFLITGLTLIVLTSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKKYDQFSH 226
[Close]
BLAST of SMED30016072 vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 108.612 bits (270), Expect = 1.612e-27
Identity = 59/136 (43.38%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKK 801
            IQQE HDI++ +K+  PW+G  + PF +A+ F+ L + FL  GLT++ L  FGNIFLS+D G+I+GP F+ L+II  A+GIK    +Y I+E  R K+KFRG +  M+++T        ++ LV+GT ++ A+++K
Sbjct:  125 IQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRGFGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINVTKGEITKRPQEKLVTGTNTKEAISRK 260
[Close]
BLAST of SMED30016072 vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 108.612 bits (270), Expect = 1.820e-27
Identity = 59/136 (43.38%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKK 801
            IQQE HDI++ +K+  PW+G  + PF +A+ F+ L + FL  GLT++ L  FGNIFLS+D G+I+GP F+ L+II  A+GIK    +Y I+E  R K+KFRG +  M+++T        ++ LV+GT ++ A+++K
Sbjct:  131 IQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRGFGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINVTKGEITKRPQEKLVTGTNTKEAISRK 266
[Close]
BLAST of SMED30016072 vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 108.612 bits (270), Expect = 2.237e-27
Identity = 59/136 (43.38%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKK 801
            IQQE HDI++ +K+  PW+G  + PF +A+ F+ L + FL  GLT++ L  FGNIFLS+D G+I+GP F+ L+II  A+GIK    +Y I+E  R K+KFRG +  M+++T        ++ LV+GT ++ A+++K
Sbjct:  142 IQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRGFGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINVTKGEITKRPQEKLVTGTNTKEAISRK 277
[Close]
BLAST of SMED30016072 vs. Planmine SMEST
Match: SMESG000078527.1 (SMESG000078527.1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.105e-16
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:  394 IQQESHDIQLHRKIRQPWYGVGKYPFRIAVAXXXXXXXXXXXXXXXXXXXSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSYLISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDT----LVSGTQSEMAVTK 798
            IQQE HDI++ +KI    YG  K PFR ++  +++   F + GLT+I+   +G +FLSMD G+I+GP F+V  +I  ++GIK    +Y   +  R +L FR     MV + T  P  N   T    + SG+    A+ K
Sbjct:  134 IQQEFHDIKVQKKINSLAYGHAKRPFRYSIICFVIGGVFFLIGLTVIMFRLYGQLFLSMDKGEIIGPIFIVSGVILLSVGIKFMVDAYRYGQLERKRLGFRAAGPNMVVLKTT-PNHNVTPTANNYVQSGSAGAQAINK 271
The following BLAST results are available for this feature:
BLAST of SMED30016072 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267H9927.957e-1336.17Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267EJ818.359e-1336.17Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267E0J39.786e-1336.17Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267GI247.051e-1235.71Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267G8F97.120e-1235.71Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of SMED30016072 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016072 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000064318.19.303e-14187.40SMESG000064318.1[more]
SMESG000035447.11.612e-2743.38SMESG000035447.1[more]
SMESG000035447.11.820e-2743.38SMESG000035447.1[more]
SMESG000035447.12.237e-2743.38SMESG000035447.1[more]
SMESG000078527.15.105e-1636.69SMESG000078527.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016072 ID=SMED30016072|Name=SMED30016072|organism=Schmidtea mediterranea sexual|type=transcript|length=934bp
TTTTTAATTTGATAAACAAACTTCATGTCAATATTTTGTCAAATTACTAT
ATAATTAATGTCTGAGTTTTCCCATAAGAATAAGTTAAAGCAACTAAAAA
AGGATCATTCCACTTCGTCATCTCATAATTATCAAAATGACTTTCATGGT
AACCAGAGTATATTAAGTTACAACAGTACCAGATCATCAAATGATATTTT
AAGTTCTCAACCATCATTTTTATCAGGTGAAATATCAATTAAAAGCAAAG
ATCGTGATTTAGCAACTAATTTTACCAATTCTGCTCACGTGATTGGGGTA
ACTCAAAGCGTTAGAAGTTTGAAATGTAATATGCCATTAAGATCTCGTAG
TTTGAACGCATCAAAAGCTTCACTATCAAGTAAGCGTAGTAATATCCAAC
AAGAATCTCATGATATTCAGCTTCATCGAAAAATTAGACAACCTTGGTAC
GGTGTCGGTAAATATCCATTTCGAATTGCAGTTGCATTTTACATTTTATT
CTTGACATTTTTGATAACTGGTTTGACTTTGATCGTATTGACATCTTTTG
GTAACATTTTTCTCTCGATGGATACCGGACAGATTTTGGGACCCTCCTTT
GTTGTTCTGGCAATCATTTGTTTTGCAATTGGGATTAAATCCCATTACAA
GTCGTATTTGATCAGTGAAAAATCTCGCAGTAAATTGAAATTTCGTGGGG
TCGATGGTAAAATGGTGTCCATGACCACTAAATTGCCTGAATCAAATACG
AGAGATACATTGGTTAGTGGAACCCAATCAGAGATGGCTGTGACAAAAAA
ATATGATCAATTTTCTCACTGACGCTCCTTTTAAATCTCAACATATCATT
TATTATTGTGATCTCGTATCCTATTTGCTAATTTTATGATATCTTACAAT
TTATGAATTTTTACTAATAAAATATTTATACGTG
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protein sequence of SMED30016072-orf-1

>SMED30016072-orf-1 ID=SMED30016072-orf-1|Name=SMED30016072-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=255bp
MSEFSHKNKLKQLKKDHSTSSSHNYQNDFHGNQSILSYNSTRSSNDILSS
QPSFLSGEISIKSKDRDLATNFTNSAHVIGVTQSVRSLKCNMPLRSRSLN
ASKASLSSKRSNIQQESHDIQLHRKIRQPWYGVGKYPFRIAVAFYILFLT
FLITGLTLIVLTSFGNIFLSMDTGQILGPSFVVLAIICFAIGIKSHYKSY
LISEKSRSKLKFRGVDGKMVSMTTKLPESNTRDTLVSGTQSEMAVTKKYD
QFSH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 174..193