SMED30016022

Overview
NameSMED30016022
Smed IDSMED30016022
Length (bp)1611
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30016022 (SMED30016022) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30016022 (SMED30016022) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30016022 (SMED30016022) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30016022 (SMED30016022) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30016022

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 19

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30016022h1SMcG0005128 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
pharynxSMED30016022h1SMcG0005128 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30016022h1SMcG0005128 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30016022h1SMcG0005128 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30016022h1SMcG0005128 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016022h1SMcG0005128 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30016022h1SMcG0021637 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
pharynxSMED30016022h1SMcG0021637 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30016022h1SMcG0021637 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30016022h1SMcG0021637 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		whole organism asexual adult colorimetric in situ hybridization evidence
intestinal phagocyteSMED30016022h1SMcG0021637 Contig1766uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30016022h1SMcG0021637 Contig1766newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pigment cellSMED30016022h1SMcG0005128 SmedASXL_070953SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
cephalic gangliaSMED30016022h1SMcG0005128 dd_Smed_v4_3318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30016022h1SMcG0005128 dd_Smed_v4_3318_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30016022h1SMcG0005128 dd_Smed_v4_16863_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30016022h1SMcG0005128 dd_Smed_v4_16863_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30016022h1SMcG0005128 dd_Smed_v4_16863_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30016022h1SMcG0005128 dd_Smed_v6_3318_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30016022 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.008514:1089..16286 -7780
v31.008330:13612..29629 +6979
Homology
[Close]
BLAST of SMED30016022 vs. Planmine SMEST
Match: SMESG000053405.1 (SMESG000053405.1)

HSP 1 Score: 855.899 bits (2210), Expect = 0.000e+0
Identity = 480/510 (94.12%), Postives = 481/510 (94.31%), Query Frame = 2 
Query:   65 MRHIHLIMATLVFNQFVDIFQGFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGCIQGFYVNEYKTKFIQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILXXXXXXXXXXXXXXXXXXXXXFYFPLDASAGYVNVGWTHNNDTCEPIKSGFGYXXXXXXXXXXXXXAFHYDRDHFIASIETNQENNFWFXXXXXXXXXXXXXFVIGSVLITKHVXXXXXXXXXXXXXXNIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ 1594
            MRHIHLIMATLVFNQFVDIF+GFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGC             IQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILIVKFVDSI IIKISSGDFIKKFYFPLDASAGYVNVGWTHNNDTCEPIKSGF               AFHYDRDHFIASIETNQENNFWFIISISLLSNLLLIFVIGSVLITKHVTKTKGKISTSISKINIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ
Sbjct:    1 MRHIHLIMATLVFNQFVDIFRGFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGC-------------IQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILIVKFVDSIYIIKISSGDFIKKFYFPLDASAGYVNVGWTHNNDTCEPIKSGF---------------AFHYDRDHFIASIETNQENNFWFIISISLLSNLLLIFVIGSVLITKHVTKTKGKISTSISKINIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ 482
[Close]
BLAST of SMED30016022 vs. Planmine SMEST
Match: SMESG000053405.1 (SMESG000053405.1)

HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0
Identity = 473/503 (94.04%), Postives = 474/503 (94.23%), Query Frame = 2 
Query:   86 MATLVFNQFVDIFQGFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGCIQGFYVNEYKTKFIQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILXXXXXXXXXXXXXXXXXXXXXFYFPLDASAGYVNVGWTHNNDTCEPIKSGFGYXXXXXXXXXXXXXAFHYDRDHFIASIETNQENNFWFXXXXXXXXXXXXXFVIGSVLITKHVXXXXXXXXXXXXXXNIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ 1594
            MATLVFNQFVDIF+GFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGC             IQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILIVKFVDSI IIKISSGDFIKKFYFPLDASAGYVNVGWTHNNDTCEPIKSGF               AFHYDRDHFIASIETNQENNFWFIISISLLSNLLLIFVIGSVLITKHVTKTKGKISTSISKINIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ
Sbjct:    1 MATLVFNQFVDIFRGFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGC-------------IQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILIVKFVDSIYIIKISSGDFIKKFYFPLDASAGYVNVGWTHNNDTCEPIKSGF---------------AFHYDRDHFIASIETNQENNFWFIISISLLSNLLLIFVIGSVLITKHVTKTKGKISTSISKINIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDTAVYSEIDIAQ 475
[Close]
BLAST of SMED30016022 vs. Planmine SMEST
Match: SMESG000056437.1 (SMESG000056437.1)

HSP 1 Score: 139.043 bits (349), Expect = 1.425e-35
Identity = 99/326 (30.37%), Postives = 164/326 (50.31%), Query Frame = 2 
Query:  101 FNQFVDIFQ-GFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNH--TNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFE----EIIGCIQGFYVNEYKTKFIQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYK--IRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILL-VQQNRQSEIWYKKSLYKLQSNRTHIL 1048
            F  ++ +F  G+L G L ENF N M+  I + F+ +S+  LL AID+N N F + +++ +    +++ +FNG  ++ T+            F I LQ    N  + +       L N+FN   TNP +F     + + +     T  ++GN+      G    +F+    +++GC+  F +N  + KF   GD   P+C K+ +E+IC +  C+      Y L CSLS +N  E+CY+  +    Q  SY         RI K  W+ +  ++ CL++I TK  S I +Y N L EI+L ++ NR  E W +++L K+Q N  H+L
Sbjct:   14 FINYIQLFSSGYLYGKLDENFENGMQFYIDLDFRDVSHGILLYAIDRNRNRFLIESAEKYRGRRKIVFNFNGQIFNSTNTYW--RFSGTSTFTIFLQFKYDNLYIMDYSYRHATLLNVFNRNKTNPDTFVGYPISDDHNSTTRTTDFWLGNVG--PSIGKDKTVFQPSKVQMVGCVYNFRINYKEIKFTTYGDDLLPFCRKQFSETICIKGKCKKEQRRSYILDCSLSEMNTKEYCYEDFLTYMGQTLSYLTVGLGEEPRIMKMVWKQEFSKDYCLLEIETKKESSILVYANRLNEIVLNIRSNRSVE-WTRRTLCKMQPNLIHVL 334
[Close]
BLAST of SMED30016022 vs. Planmine SMEST
Match: SMESG000056437.1 (SMESG000056437.1)

HSP 1 Score: 139.043 bits (349), Expect = 1.708e-35
Identity = 99/326 (30.37%), Postives = 164/326 (50.31%), Query Frame = 2 
Query:  101 FNQFVDIFQ-GFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNH--TNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFE----EIIGCIQGFYVNEYKTKFIQAGDYFYPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYK--IRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILL-VQQNRQSEIWYKKSLYKLQSNRTHIL 1048
            F  ++ +F  G+L G L ENF N M+  I + F+ +S+  LL AID+N N F + +++ +    +++ +FNG  ++ T+            F I LQ    N  + +       L N+FN   TNP +F     + + +     T  ++GN+      G    +F+    +++GC+  F +N  + KF   GD   P+C K+ +E+IC +  C+      Y L CSLS +N  E+CY+  +    Q  SY         RI K  W+ +  ++ CL++I TK  S I +Y N L EI+L ++ NR  E W +++L K+Q N  H+L
Sbjct:   13 FINYIQLFSSGYLYGKLDENFENGMQFYIDLDFRDVSHGILLYAIDRNRNRFLIESAEKYRGRRKIVFNFNGQIFNSTNTYW--RFSGTSTFTIFLQFKYDNLYIMDYSYRHATLLNVFNRNKTNPDTFVGYPISDDHNSTTRTTDFWLGNVG--PSIGKDKTVFQPSKVQMVGCVYNFRINYKEIKFTTYGDDLLPFCRKQFSETICIKGKCKKEQRRSYILDCSLSEMNTKEYCYEDFLTYMGQTLSYLTVGLGEEPRIMKMVWKQEFSKDYCLLEIETKKESSILVYANRLNEIVLNIRSNRSVE-WTRRTLCKMQPNLIHVL 333
[Close]
BLAST of SMED30016022 vs. Planmine SMEST
Match: SMESG000003492.1 (SMESG000003492.1)

HSP 1 Score: 139.428 bits (350), Expect = 1.713e-35
Identity = 121/375 (32.27%), Postives = 179/375 (47.73%), Query Frame = 2 
Query:   95 LVFNQFVDIFQGFLIGHLKENFRNKMEIDIFIYFKPISNRRLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVT----SQSAIDLVFDEEIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQMIDKTIIFVGNIDNIQLNGAINILFEEIIGCIQGFYVNEYKTKFIQAGDYFYPYCSKRATESICEERNCRNRSIDY-YTLCCSLSGINAGEHCYKIRTEQQKSSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEILLVQQNRQSEIWYKKSLYKLQSNRTHILXXXXXXXXXXXXXXXXXXXXXFYFPLDASAGYVNVGWTHNNDTCEPIKSGFG 1204
            LV      I   +LIG ++  FRN + I I I F  IS++ LL AID N N  ++ TSK F  D +LI++FNG   +      S  A     DE I       SI         ++R + EN +    P + D          M ++  I++G   +       N    +IIGC++   VN     F++ G+ FY  C  R TESICE+  CRN + ++ Y L C L G++   HCY   T+     +            K AW P+L   +CLIQI+T+N+S+I IY N   +I++   + +S    K + Y++ S   H L + F+D    I+IS+G FIK    P       +N+GW  N   C+PI+  FG
Sbjct:   22 LVLVSIFGISSSYLIGEIEGEFRNDVTIGIRIGFSRISDKYLLHAIDANQNKLSIKTSKSFASDSKLILNFNGATRAFKCLENSLYAAKWPSDELIISNISYSSI---------NSRSVTENDW----PAAGD----------MSNRMKIWLGYDHDWISKSHSNWPTNQIIGCVELIDVNGKSIIFVKHGNDFYMDCYNRVTESICEKSQCRNETDNHQYILNCRLPGLSTSPHCYPDITDNTGGLHSYQPITHGHVAVKIAWIPQLSIRQCLIQIITRNDSIIDIYINSANQIMIEITDNKSIKSSKYNSYQISSTDVHALSMGFIDHKLTIRISNGYFIKTRMLPNHFRVETINIGWNSNPYLCQPIRGKFG 373
The following BLAST results are available for this feature:
BLAST of SMED30016022 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30016022 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000053405.10.000e+094.12SMESG000053405.1[more]
SMESG000053405.10.000e+094.04SMESG000053405.1[more]
SMESG000056437.11.425e-3530.37SMESG000056437.1[more]
SMESG000056437.11.708e-3530.37SMESG000056437.1[more]
SMESG000003492.11.713e-3532.27SMESG000003492.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30016022 ID=SMED30016022|Name=SMED30016022|organism=Schmidtea mediterranea sexual|type=transcript|length=1611bp
TGATAATATTAATAGTTATTATAATTATTACAATTTTAATATCAATTATT
ACAGATAATAAGAAATGAGACATATTCACCTGATAATGGCAACTCTAGTT
TTCAATCAATTCGTAGATATTTTTCAAGGATTTCTAATCGGTCATTTGAA
GGAAAATTTTCGAAATAAAATGGAAATCGACATTTTCATATATTTTAAAC
CGATTTCTAACAGGCGTTTATTGCTAGCAATCGACAAGAATAATAATTCA
TTTACCGTTCTGACTAGTAAATATTTCCATAAGGATTTTCAATTAATTAT
TGATTTTAACGGTTTGAATTACTCCGTTACCAGCCAATCAGCAATTGATT
TGGTTTTCGATGAAGAAATCTTTAAAATAAATTTACAACTCTCAATAGGA
AATAACAATGTATATGAATTAGGATCCACCAGAATTTTGCTTGAAAACAT
TTTCAATCATACAAACCCAACTTCTTTTGATGATTTATTAAATGCTTATA
ATTTTCATCAAATGATCGACAAAACAATAATTTTCGTTGGAAATATAGAC
AATATTCAATTGAATGGAGCAATTAACATTTTGTTTGAAGAAATTATCGG
TTGTATTCAGGGGTTTTATGTTAATGAATATAAAACTAAATTCATTCAAG
CGGGAGATTATTTCTATCCATATTGTTCAAAACGAGCTACTGAATCTATT
TGTGAGGAAAGAAACTGTCGGAACAGATCGATTGACTATTATACTCTTTG
CTGTAGCTTATCGGGAATTAATGCCGGAGAACACTGCTATAAAATACGAA
CTGAACAACAAAAAAGTTCTTATCGTATTTCCGCCGAGGATTCAAATATT
AGAATTGCGAAATTTGCATGGAGACCAAAACTCTTAGAAAATGAATGTTT
GATCCAAATCGTAACTAAAAATAATTCTTTAATCACAATCTATAAAAATC
CATTAGGTGAAATCCTTTTGGTTCAACAGAATAGGCAGTCAGAAATTTGG
TACAAGAAGAGTCTGTACAAATTGCAATCCAATCGGACCCATATTTTAAT
TGTGAAATTTGTTGATTCTATCTCTATTATAAAGATTTCAAGTGGTGATT
TTATCAAAAAGTTTTATTTTCCATTAGATGCATCGGCCGGATATGTGAAT
GTTGGATGGACTCATAACAATGACACATGCGAACCAATCAAATCAGGCTT
TGGTTACCTAACTATAATAAAATTTCTATTTTTCACAATATTTATAGCAT
TTCATTATGATCGAGATCATTTTATAGCTTCCATTGAAACTAACCAAGAG
AATAATTTTTGGTTTATCATTTCTATTTCGTTGCTATCAAACTTGCTTCT
CATTTTTGTCATTGGGAGTGTCCTTATCACCAAACACGTAACAAAAACAA
AGGGAAAGATATCGACCTCAATTTCAAAAATAAATATATACGAGGAGATT
AATCAGGCCCCAGAAGACTCGATGTATTCAAATATGGTGGAAAATCAGAG
AAACGTTATTCGGTCATTGGCCAACTACCAATTCCATTTACGGAGCAACC
CAAATCGAGACACGGCAGTATATTCAGAAATCGACATTGCACAATAAAAT
ATTAATGTCAC
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protein sequence of SMED30016022-orf-1

>SMED30016022-orf-1 ID=SMED30016022-orf-1|Name=SMED30016022-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=511bp
MRHIHLIMATLVFNQFVDIFQGFLIGHLKENFRNKMEIDIFIYFKPISNR
RLLLAIDKNNNSFTVLTSKYFHKDFQLIIDFNGLNYSVTSQSAIDLVFDE
EIFKINLQLSIGNNNVYELGSTRILLENIFNHTNPTSFDDLLNAYNFHQM
IDKTIIFVGNIDNIQLNGAINILFEEIIGCIQGFYVNEYKTKFIQAGDYF
YPYCSKRATESICEERNCRNRSIDYYTLCCSLSGINAGEHCYKIRTEQQK
SSYRISAEDSNIRIAKFAWRPKLLENECLIQIVTKNNSLITIYKNPLGEI
LLVQQNRQSEIWYKKSLYKLQSNRTHILIVKFVDSISIIKISSGDFIKKF
YFPLDASAGYVNVGWTHNNDTCEPIKSGFGYLTIIKFLFFTIFIAFHYDR
DHFIASIETNQENNFWFIISISLLSNLLLIFVIGSVLITKHVTKTKGKIS
TSISKINIYEEINQAPEDSMYSNMVENQRNVIRSLANYQFHLRSNPNRDT
AVYSEIDIAQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell