SMED30015809

Overview
NameSMED30015809
Smed IDSMED30015809
Length (bp)680
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30015809 (SMED30015809) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30015809 (SMED30015809) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30015809 (SMED30015809) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30015809 (SMED30015809) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30015809

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30015809SMESG000069776.1 SmedASXL_051707SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30015809SMESG000069776.1 dd_Smed_v4_10177_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30015809SMESG000069776.1 dd_Smed_v6_10177_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30015809 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.006607:15633..18258 -3311
Homology
[Close]
BLAST of SMED30015809 vs. TrEMBL
Match: A0A267FPC5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015604g2 PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.878e-47
Identity = 73/192 (38.02%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:   69 YLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVN 644
            Y +  F +  AY+Y NS+ R  +I++R+  G E AF   +Q IE +    +G G+++FP+F  AK WYE ++E+RQ DWL +  +++VPAR   D  M ++E  +W+ FRD   F++EYL  LN   +G+ NI+A P+Y   ++R +W PKYL + QW+ +   ++Y    G  M     +VA G++  GVN
Sbjct:   16 YAVIRFTQDIAYNYHNSVKRTASIIQRSHGGHECAFLPDVQRIEGDERRLYGYGVLYFPNFDAAKYWYECTNEVRQQDWLWSADIVIVPARGAFDKGMAVLEINDWSAFRDQTAFEDEYLKGLNNTTEGRWNIVACPDYLQYRMRSSWSPKYLVINQWSDVETWRSYRQAHGAAMHSFAQTVATGSVQVGVN 207
[Close]
BLAST of SMED30015809 vs. TrEMBL
Match: A0A267DNX7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015604g1 PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.139e-47
Identity = 73/192 (38.02%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:   69 YLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVN 644
            Y +  F +  AY+Y NS+ R  +I++R+  G E AF   +Q IE +    +G G+++FP+F  AK WYE ++E+RQ DWL +  +++VPAR   D  M ++E  +W+ FRD   F++EYL  LN   +G+ NI+A P+Y   ++R +W PKYL + QW+ +   ++Y    G  M     +VA G++  GVN
Sbjct:   16 YAVIRFTQDIAYNYHNSVKRTASIIQRSHGGHECAFLPDVQRIEGDERRLYGYGVLYFPNFDAAKYWYECTNEVRQQDWLWSADIVIVPARGAFDKGMAVLEINDWSAFRDQTAFEDEYLKGLNNTTEGRWNIVACPDYLQYRMRSSWSPKYLVINQWSDVETWRSYRQAHGAAMHSFAQTVATGSVQVGVN 207
[Close]
BLAST of SMED30015809 vs. TrEMBL
Match: A0A267G5A5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002947g3 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.201e-46
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 3 
Query:   33 MAEYYDFPNGE---CYLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVN 644
            MA Y+     E    Y +  F +  AY+Y NSI R  +I++R+  G++ AF   +Q IE     ++G G+++FP F+ AK WYE ++E+RQ DWL +  ++LVPAR   D  M +VE  +W+ FRD   F+NEYL+ LN    G+ N++A P+Y   +LR +W PKYL + QW  + A + Y    G  +     + A G +  GVN
Sbjct:    1 MASYHGLKEPENVGYYAVIRFGKDIAYNYHNSIKRIASIIQRSHNGQDCAFLPDVQLIEGEDRRQYGYGLLYFPSFEAAKYWYECTNEVRQQDWLWSAAILLVPARGAFDKAMSVVEINDWSDFRDQTAFENEYLAELNDPSDGRWNVVACPDYLQYRLRSSWSPKYLVINQWPDVEAWRRYRQANGVRVHHFALTAATGTVAVGVN 207
[Close]
BLAST of SMED30015809 vs. TrEMBL
Match: A0A267DBP7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig002947g1 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.585e-46
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 3 
Query:   33 MAEYYDFPNGE---CYLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVN 644
            MA Y+     E    Y +  F +  AY+Y NSI R  +I++R+  G++ AF   +Q IE     ++G G+++FP F+ AK WYE ++E+RQ DWL +  ++LVPAR   D  M +VE  +W+ FRD   F+NEYL+ LN    G+ N++A P+Y   +LR +W PKYL + QW  + A + Y    G  +     + A G +  GVN
Sbjct:   10 MASYHGLKEPENVGYYAVIRFGKDIAYNYHNSIKRIASIIQRSHNGQDCAFLPDVQLIEGEDRRQYGYGLLYFPSFEAAKYWYECTNEVRQQDWLWSAAILLVPARGAFDKAMSVVEINDWSDFRDQTAFENEYLAELNDPSDGRWNVVACPDYLQYRLRSSWSPKYLVINQWPDVEAWRRYRQANGVRVHHFALTAATGTVAVGVN 216
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BLAST of SMED30015809 vs. TrEMBL
Match: A0A1I8FH46 (XendoU domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.291e-26
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 3 
Query:   69 YLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKG 455
            Y +  F +  AY+Y NS+ R  +I++R+  G E AF   +Q IE +    +G G+++FP+F  AK WYE ++E+RQ DWL +  +++VPAR   D  M ++E  +W+ FRD   F++EYL  LN   +G
Sbjct:  436 YAVIRFTQDIAYNYHNSVKRTASIIQRSHGGHECAFLPDVQRIEGDERRLYGYGVLYFPNFDAAKYWYECTNEVRQQDWLWSADIVIVPARGAFDKGMAVLEINDWSAFRDQTAFEDEYLKGLNNTTEG 564
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BLAST of SMED30015809 vs. Planmine SMEST
Match: SMESG000069776.1 (SMESG000069776.1)

HSP 1 Score: 436.802 bits (1122), Expect = 2.406e-158
Identity = 207/208 (99.52%), Postives = 208/208 (100.00%), Query Frame = 3 
Query:   33 MAEYYDFPNGECYLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVNSKSK 656
            MAEYYDFPNGECYLISHFKESDAYSYRNSI+RQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVNSKSK
Sbjct:    1 MAEYYDFPNGECYLISHFKESDAYSYRNSIVRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIWAGVNSKSK 208
[Close]
BLAST of SMED30015809 vs. Planmine SMEST
Match: SMESG000007291.1 (SMESG000007291.1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.300e-15
Identity = 59/185 (31.89%), Postives = 92/185 (49.73%), Query Frame = 3 
Query:   63 ECYLISHFKESDAYSYRNSIIRQITILER---NFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFT------MPIVEFAEWNFFRDVQKFQNEYL--SHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNY--ADE 578
            EC++   F +S A +YRN+ +++  ++ R   +  G+ V F   +Q IE N   K  +G+  F  +  AK W ES +E RQ D+L NV + + P  N+ D T      M I+   E  FF+D+  F ++YL     +T + G +  +   E  Y   RG   P +  V Q+ SI   + Y  ADE
Sbjct:   21 ECFVFILFPKSRAQAYRNAAVKEKAVISRYSIHKPGQIVGFAYHVQAIEGNWNCKLSVGVFRFATYNDAKMWLESDNEFRQQDFLTNVDIWIAPIINE-DLTRKGYAIMQIIS-QEVCFFKDI--FLHKYLPNEEASTINHGGHPFVINHENPYC-WRGVPPPGHTIVNQFPSIMNFERYLAADE 200
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BLAST of SMED30015809 vs. Planmine SMEST
Match: SMESG000062647.1 (SMESG000062647.1)

HSP 1 Score: 63.929 bits (154), Expect = 4.650e-12
Identity = 48/178 (26.97%), Postives = 89/178 (50.00%), Query Frame = 3 
Query:   63 ECYLISHFKESDAYSYRNSIIRQITILER---NFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPA-RNDVDFT-MPIVEFAEWNF-FRDVQKFQNEYLSHLN---TADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNY 569
            EC+++  F ES   +YRN+ +++  ++ R   +  G+ V F  +++ IE   + +  IG + F  ++ A  W ES +  RQ D+L +V + +VP  R D+     PI++       + D+  F ++YL       T+ +G   ++  P  T    RG   P ++ + Q+ S +A  NY
Sbjct:   53 ECFVLIIFPESRGQAYRNAAVKEKAVISRYSIHAPGKNVGFAYQVKVIEGYWDTQLSIGALKFASYRDASMWLESDNAFRQQDFLTHVDIWIVPINREDMSHKGYPILQMVSQKVCYPDI--FFHKYLPAEEAAVTSHEGVPFVVNHP--TPYAWRGKKPPGHIVINQFPSCDAFNNY 226
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BLAST of SMED30015809 vs. Planmine SMEST
Match: SMESG000008612.1 (SMESG000008612.1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.935e-12
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 3 
Query:  279 SHEIRQPDWLNNVTLILVPAR---NDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPEYTYVKLRGNWCPKYLAVTQWAS 548
            S+E+RQ +WL  V +++VP+R     +D    IVE  E   +R   +F +E L  +++A   +NNI+A P Y    LRG+W P Y+ +  W+S
Sbjct:    2 SYEVRQKEWLFPVDIVIVPSRWRIKSIDENT-IVEILEIVKYRSPSRFSSECLDKIDSA--KENNIVAVPRYATEVLRGSWNPLYIIINVWSS 91
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BLAST of SMED30015809 vs. Planmine SMEST
Match: SMESG000004187.1 (SMESG000004187.1)

HSP 1 Score: 54.6842 bits (130), Expect = 6.137e-9
Identity = 40/177 (22.60%), Postives = 84/177 (47.46%), Query Frame = 3 
Query:   60 GECYLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQKMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILVPARNDVDFTMPIVEFAEWNFFR----DVQKFQNEYLSHLNTADKG---QNNIIAAPEYTYVKLRGNWCPKYLAVTQWASINALQNY 569
            GE  ++  F  +   S+ N+++++  I+     G+ V F ++++ IE +   K+ IG++ F   + AK W  S    +Q DWL+ V + ++P         P  E+     F     + ++F +++L    +A  G   +N I    +    + R N+C  ++ ++ W S++   N+
Sbjct:   20 GEVLVLILFDATLTKSFCNTMVKEKNIIRNYGNGQMVGFSEEIKVIEGDWPQKYTIGLLRFDTMKDAKKWNFSDPLTKQQDWLDQVEIYVMPLLK----AFPKKEYQVMELFNCDLINEEQFYHKFLPSYKSAIDGNGCENFIACTDKVERWRGRHNFC--HVMISLWPSLDDYMNW 190
The following BLAST results are available for this feature:
BLAST of SMED30015809 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267FPC53.878e-4738.02Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267DNX74.139e-4738.02Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267G5A54.201e-4638.16Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267DBP76.585e-4638.16Uncharacterized protein (Fragment) OS=Macrostomum ... [more]
A0A1I8FH467.291e-2639.53XendoU domain-containing protein OS=Macrostomum li... [more]
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BLAST of SMED30015809 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015809 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000069776.12.406e-15899.52SMESG000069776.1[more]
SMESG000007291.17.300e-1531.89SMESG000007291.1[more]
SMESG000062647.14.650e-1226.97SMESG000062647.1[more]
SMESG000008612.14.935e-1236.56SMESG000008612.1[more]
SMESG000004187.16.137e-922.60SMESG000004187.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015809 ID=SMED30015809|Name=SMED30015809|organism=Schmidtea mediterranea sexual|type=transcript|length=680bp
GTTGAAGCTGTGCAACTATTTATTATATTTTTATGGCCGAATATTACGAC
TTTCCGAACGGCGAATGCTACTTGATAAGCCATTTCAAAGAATCTGATGC
GTATTCCTACAGAAACAGCATTATCCGACAAATTACAATTTTGGAAAGAA
ACTTTTGTGGAAGAGAAGTAGCATTTTGTCAGAAAATGCAACCGATTGAA
ACAAACACTGAGAATAAGTTTGGAATTGGGATAATTCATTTTCCCGATTT
CCAAATTGCAAAGAATTGGTACGAATCATCGCACGAGATCAGGCAACCTG
ATTGGCTGAATAATGTGACGCTCATTCTGGTTCCCGCACGGAACGATGTG
GATTTTACCATGCCGATTGTCGAGTTCGCTGAATGGAATTTCTTTAGGGA
CGTTCAGAAATTCCAAAATGAATATTTGTCTCATCTAAATACTGCAGATA
AAGGACAGAATAATATTATAGCAGCTCCAGAATATACATATGTTAAATTA
CGAGGAAATTGGTGCCCCAAATATTTAGCCGTCACTCAATGGGCTTCAAT
AAACGCGCTGCAGAATTATGCGGATGAACGGGGACCCATGATGCTGGAAA
TATTAAACTCTGTTGCGGGAGGCAATATTTGGGCAGGAGTGAATAGTAAA
TCAAAATAAACACAAATTAGTATACAAAAG
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protein sequence of SMED30015809-orf-1

>SMED30015809-orf-1 ID=SMED30015809-orf-1|Name=SMED30015809-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=209bp
MAEYYDFPNGECYLISHFKESDAYSYRNSIIRQITILERNFCGREVAFCQ
KMQPIETNTENKFGIGIIHFPDFQIAKNWYESSHEIRQPDWLNNVTLILV
PARNDVDFTMPIVEFAEWNFFRDVQKFQNEYLSHLNTADKGQNNIIAAPE
YTYVKLRGNWCPKYLAVTQWASINALQNYADERGPMMLEILNSVAGGNIW
AGVNSKSK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000418head
PLANA:0000420parapharyngeal region