RNA-binding protein 40

Overview
NameRNA-binding protein 40
Smed IDSMED30015751
Length (bp)1557
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding protein 40 (SMED30015751) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein 40 (SMED30015751) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein 40 (SMED30015751) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein 40 (SMED30015751) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30015751

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30015751SMESG000039309.1 SmedASXL_009927SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Human
Match: RNPC3 (RNA binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:HGNC:18666])

HSP 1 Score: 86.2705 bits (212), Expect = 2.789e-17
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNAN----INNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +  EK       + +    K   ++     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 78.1814 bits (191), Expect = 9.891e-15
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+  +   F +    EGRMKGQAF+   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Human
Match: RNPC3 (RNA binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:HGNC:18666])

HSP 1 Score: 86.2705 bits (212), Expect = 2.789e-17
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNAN----INNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +  EK       + +    K   ++     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 78.1814 bits (191), Expect = 9.891e-15
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+  +   F +    EGRMKGQAF+   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Human
Match: RNPC3 (RNA binding region (RNP1, RRM) containing 3 [Source:HGNC Symbol;Acc:HGNC:18666])

HSP 1 Score: 86.2705 bits (212), Expect = 2.933e-17
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNAN----INNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +  EK       + +    K   ++     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 78.1814 bits (191), Expect = 9.692e-15
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+  +   F +    EGRMKGQAF+   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  384 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 504
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Human
Match: RBM41 (RNA binding motif protein 41 [Source:HGNC Symbol;Acc:HGNC:25617])

HSP 1 Score: 77.411 bits (189), Expect = 1.345e-14
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 2 
Query: 1127 IRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS*LYLCSFQL*FCLTS 1546
            + +P  F+  DEI+   L   E   +    +Y+ G P+  LY+KN+S +V++  L+SL+A F +   P      Q    T GRM+GQAF++F ++ +A +AL L N +KL  K + ++F +N +    L +  L  C T 
Sbjct:  271 LTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP----IQFRMMT-GRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKNKKQRSNLQATSLISCATG 405
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Human
Match: RBM41 (RNA binding motif protein 41 [Source:HGNC Symbol;Acc:HGNC:25617])

HSP 1 Score: 77.0258 bits (188), Expect = 1.472e-14
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 2 
Query: 1127 IRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS*LYLCSFQL*FCLTS 1546
            + +P  F+  DEI+   L   E   +    +Y+ G P+  LY+KN+S +V++  L+SL+A F +   P      Q    T GRM+GQAF++F ++ +A +AL L N +KL  K + ++F +N +    L +  L  C T 
Sbjct:  271 LTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP----IQFRMMT-GRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKNKKQRSNLQATSLISCATG 405
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Fly
Match: CG44249 (gene:FBgn0265184 transcript:FBtr0339103)

HSP 1 Score: 66.6254 bits (161), Expect = 1.624e-11
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 2 
Query: 1178 LPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQS---VAKEALELTNAFKLIDKPVSVQFSRN 1492
            L  S   ++   KNY  G PSN+LYIKN++K V +  L  LYA +   S         +    +GRMKGQAFV+F+  +   +  +AL  TN     DKP+ V + + 
Sbjct:  305 LSTSALEALPVYKNYKTGDPSNKLYIKNLAKSVDEQQLRELYAKYTAASK------LDIKVMHQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCYGKQ 406

HSP 2 Score: 50.447 bits (119), Expect = 2.418e-6
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 2 
Query:  350 IPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPF 550
            I ++V  L A   +     P  P L Y+YP  N  IL  I +SL  N +FY Q LHLMN+ +   PF
Sbjct:  109 IDKYVRRLYACNNQCDFTQPPPPYLSYSYPPINGEILARIGQSLQTNSHFYNQVLHLMNRMNLEPPF 175
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 94.7449 bits (234), Expect = 3.953e-22
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G L   E   ++  K Y+ G P+ +LY+KN++K V +  L  +Y  ++D S+  E   F +    EGRMKGQAF+   S+  A++AL+ TN + L DKP+ VQF+R+++
Sbjct:   51 PSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARSAK 171
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 97.0561 bits (240), Expect = 4.944e-21
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNN--------LL--AIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            +LI++HLP+  S ++ E+L  +F   ++   S+ GP+++ A  TF     A+ AL  LH+ RI+   L V+F K        +  A+I K+  ++++    + E            L+  +IAP  GL     P LKY YP P+  ILTNI  +L++   FY Q LHLMNK + P PF P +T P
Sbjct:   16 TLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKALNRLHQLRILGRTLVVEFAK-------DQDSASILKDPPVSDRTAAAVAEKEKKEKQQPSVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMNLPSPFRP-VTAP 192

HSP 2 Score: 94.7449 bits (234), Expect = 3.330e-20
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G L   E   ++  K Y+ G P+ +LY+KN++K V +  L  +Y  ++D S+  E   F +    EGRMKGQAF+   S+  A++AL+ TN + L DKP+ VQF+R+++
Sbjct:  370 PSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARSAK 490
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 97.0561 bits (240), Expect = 4.944e-21
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNN--------LL--AIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            +LI++HLP+  S ++ E+L  +F   ++   S+ GP+++ A  TF     A+ AL  LH+ RI+   L V+F K        +  A+I K+  ++++    + E            L+  +IAP  GL     P LKY YP P+  ILTNI  +L++   FY Q LHLMNK + P PF P +T P
Sbjct:   16 TLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKALNRLHQLRILGRTLVVEFAK-------DQDSASILKDPPVSDRTAAAVAEKEKKEKQQPSVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMNLPSPFRP-VTAP 192

HSP 2 Score: 94.7449 bits (234), Expect = 3.330e-20
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G L   E   ++  K Y+ G P+ +LY+KN++K V +  L  +Y  ++D S+  E   F +    EGRMKGQAF+   S+  A++AL+ TN + L DKP+ VQF+R+++
Sbjct:  370 PSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARSAK 490
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 97.0561 bits (240), Expect = 4.944e-21
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNN--------LL--AIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            +LI++HLP+  S ++ E+L  +F   ++   S+ GP+++ A  TF     A+ AL  LH+ RI+   L V+F K        +  A+I K+  ++++    + E            L+  +IAP  GL     P LKY YP P+  ILTNI  +L++   FY Q LHLMNK + P PF P +T P
Sbjct:   16 TLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKALNRLHQLRILGRTLVVEFAK-------DQDSASILKDPPVSDRTAAAVAEKEKKEKQQPSVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMNLPSPFRP-VTAP 192

HSP 2 Score: 94.7449 bits (234), Expect = 3.330e-20
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G L   E   ++  K Y+ G P+ +LY+KN++K V +  L  +Y  ++D S+  E   F +    EGRMKGQAF+   S+  A++AL+ TN + L DKP+ VQF+R+++
Sbjct:  370 PSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARSAK 490
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Match: rbm41 (RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-GENE-041114-107])

HSP 1 Score: 76.2554 bits (186), Expect = 2.191e-14
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 2 
Query: 1148 ISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFV-DWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            +S +EIKS         ++   KNY RG PS  L +KNIS + S   L+SL++ F  D S P       +     GR+KGQAF++     +A+ AL+L N +KL++KP+ ++F R
Sbjct:  303 VSDEEIKSNRETEEAIRNIPRFKNYQRGKPSKVLCVKNISPRASLAQLVSLFSRFQKDESQPI------LYRLLTGRLKGQAFITLADAEIAQAALDLLNGYKLLEKPLVIEFGR 411
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:548771])

HSP 1 Score: 94.3597 bits (233), Expect = 5.794e-20
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS   ++ G +   E    +  KNY+ G P+ +LY+KN+SK+  +  L  ++  F+D+S+  E   F +    EGRMKGQAF+ F ++ VA +AL+  + + L DKP+ +QF+R+++
Sbjct:  395 PKEFISRRALEKGRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARSAR 515
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:548771])

HSP 1 Score: 85.5001 bits (210), Expect = 4.132e-17
Identity = 41/114 (35.96%), Postives = 67/114 (58.77%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSV 1477
            P  FIS   ++ G +   E    +  KNY+ G P+ +LY+KN+SK+  +  L  ++  F+D+S+  E   F +    EGRMKGQAF+ F ++ VA +AL+  + + L DKP+ +
Sbjct:  395 PKEFISRRALEKGRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVI 508
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 51.2174 bits (121), Expect = 1.849e-6
Identity = 34/101 (33.66%), Postives = 54/101 (53.47%), Query Frame = 2 
Query: 1193 WHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLI-SLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRN 1492
             H++ A++      P+N +YI N+++K+ KD L  SLYA F  +    +I   +       +M+GQAFV F   S A  AL     F   DKP+ +Q+S++
Sbjct:    1 MHTLMAVQEVR---PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----SLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKS 93
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Match: tubgcp5 (tubulin gamma complex associated protein 5 [Source:Xenbase;Acc:XB-GENE-494053])

HSP 1 Score: 50.8322 bits (120), Expect = 2.522e-6
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCLI-SLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRN 1492
            P+N +YI N+++K+ KD L  SLYA F  +    +I   +       +M+GQAFV F   S A  AL     F   DKP+ +Q+S++
Sbjct:    8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----SLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKS 89
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Match: slc17a6 (solute carrier family 17 member 6 [Source:Xenbase;Acc:XB-GENE-1011394])

HSP 1 Score: 48.9062 bits (115), Expect = 5.367e-6
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCL-ISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P++ +YI N+  KV K  L  SLYA F  + +  +I A +       +M+GQAFV F   S A  AL     F   +KP+ +Q+++
Sbjct:    5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKT-----MKMRGQAFVIFKELSSATNALRQLQGFPFYNKPMRIQYAK 85
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Match: Rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:MGI Symbol;Acc:MGI:1914475])

HSP 1 Score: 80.8777 bits (198), Expect = 7.753e-16
Identity = 40/121 (33.06%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN+++ V +  L  ++  +VD+S+  +   F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  332 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 452
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Match: Rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:MGI Symbol;Acc:MGI:1914475])

HSP 1 Score: 80.8777 bits (198), Expect = 9.501e-16
Identity = 40/121 (33.06%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN+++ V +  L  ++  +VD+S+  +   F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  383 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 503
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Match: Rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:MGI Symbol;Acc:MGI:1914475])

HSP 1 Score: 80.8777 bits (198), Expect = 9.501e-16
Identity = 40/121 (33.06%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN+++ V +  L  ++  +VD+S+  +   F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  383 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 503
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Match: Rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:MGI Symbol;Acc:MGI:1914475])

HSP 1 Score: 74.3294 bits (181), Expect = 1.357e-13
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN+++ V +  L  ++  +VD+S+  +   F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ V F+R+++
Sbjct:  383 PSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV-FARSAR 502
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Match: Rbm41 (RNA binding motif protein 41 [Source:MGI Symbol;Acc:MGI:2444923])

HSP 1 Score: 73.559 bits (179), Expect = 1.703e-13
Identity = 42/122 (34.43%), Postives = 71/122 (58.20%), Query Frame = 2 
Query: 1127 IRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRN 1492
            +++P  FI  DEI+   L   E  ++    +Y+ G P+  LY+KN+S +V +  LISL+A F +   P      Q    T GRM+GQAF++F ++ +A +AL   N +KL  K + ++F+++
Sbjct:  271 LKQPIEFIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQEKKGP----PIQFRMMT-GRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
[Close]
BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Match: sp|F1Q8J0|RNPC3_DANRE (RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.732e-20
Identity = 64/185 (34.59%), Postives = 98/185 (52.97%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNN--------LL--AIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            +LI++HLP+  S ++ E+L  +F   ++   S+ GP+++ A  TF     A+ AL  LH+ RI+   L V+F K        +  A+I K+  ++++    + E            L+  +IAP  GL     P LKY YP P+  ILTNI  +L++   FY Q LHLMNK + P PF P +T P
Sbjct:   16 TLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKALNRLHQLRILGRTLVVEFAK-------DQDSASILKDPPVSDRTAAAVAEKEKKEKQQPSVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMNLPSPFRP-VTAP 192

HSP 2 Score: 94.7449 bits (234), Expect = 2.514e-19
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G L   E   ++  K Y+ G P+ +LY+KN++K V +  L  +Y  ++D S+  E   F +    EGRMKGQAF+   S+  A++AL+ TN + L DKP+ VQF+R+++
Sbjct:  370 PSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARSAK 490
[Close]
BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Match: sp|Q4G055|RNPC3_RAT (RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 62/181 (34.25%), Postives = 95/181 (52.49%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTN----KIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +N EK   +++ + N    K P+ +     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSSCPASNAEKKKRLDDTVENDKEKKEPDVLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 80.4925 bits (197), Expect = 8.174e-15
Identity = 40/121 (33.06%), Postives = 74/121 (61.16%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P  FIS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN+++ V +  L  ++  +VD+S+  +   F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  384 PSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 504
[Close]
BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Match: sp|Q3MHP0|RNPC3_BOVIN (RNA-binding region-containing protein 3 OS=Bos taurus OX=9913 GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.652e-17
Identity = 60/181 (33.15%), Postives = 92/181 (50.83%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLL----AIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +         EK    ++ + +   +   + L     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P  T P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPSLGTEKKKRSDDPVEDDKEKKELDCLTIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITTRP 206

HSP 2 Score: 77.7962 bits (190), Expect = 6.931e-14
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+  +   F +    EGRMKGQAF+   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  384 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 504
[Close]
BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Match: sp|Q96LT9|RNPC3_HUMAN (RNA-binding region-containing protein 3 OS=Homo sapiens OX=9606 GN=RNPC3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.339e-16
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNAN----INNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +  EK       + +    K   ++     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 78.1814 bits (191), Expect = 4.750e-14
Identity = 39/121 (32.23%), Postives = 73/121 (60.33%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+  +   F +    EGRMKGQAF+   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
[Close]
BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Match: sp|Q5R6C7|RNPC3_PONAB (RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.364e-16
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNAN----INNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            + +L+V+HLP   +  + E+L  +F  +++   S  G +++TA  TF   K A  AL  LH+ +++   L V+F K +  +      +  EK       + +    K   ++     IAP  GL  P+   LKY YP P+  IL NIV +L +   FY Q LHLMNK + P PF P    P
Sbjct:   26 DRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKRSDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARP 206

HSP 2 Score: 78.1814 bits (191), Expect = 5.329e-14
Identity = 40/121 (33.06%), Postives = 72/121 (59.50%), Query Frame = 2 
Query: 1136 PDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            P   IS  E++ G +   E  +++  ++Y+ G P+ ++Y+KN++K V +  L  ++  +VD+S+      F +    EGRMKGQAFV   ++  A +AL+  N + L  KP+ VQF+R+++
Sbjct:  385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 505
[Close]
BLAST of RNA-binding protein 40 vs. TrEMBL
Match: A0A183MWQ2 (RRM domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS20477 PE=4 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.294e-46
Identity = 155/533 (29.08%), Postives = 252/533 (47.28%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGXXXXXXXTDVSTNRRM---------KRNRDKGIGTAEMEISSGNESEISDEEHFPQIK---RQKLSFPKIPSNPLTNNYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDT-SINSNGNLSDS--AVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKI---------------------VKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGF-----VDWSNPAEIA-----AFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            E  LI KH P   S ++C          T  +F   G +++ A   F   + A   +  LH+++I++ RL+V+F+++ +         NI+K  N +      +P   N   A +  W  +     ++ Y YP  ++ +LTNIVRSL +   FY Q LH+MNK H P PF     FPG+ +V++ +D +  + +         + N D G  + EM++SSG ESE++      Q     R++    K P   L +    KT   K + + D FE       SH   + + +LP   ++NS  + S+S    E GFG I   ET+    +  +  T+ SQ +H        +F +F+LRKE+                       +N  + +D N +N I      +SLDEI S  L   +  +      YD G  +++LY+KN+S+ V++  L +++  F      D S    ++      F +   TEGRMKGQAF+    +S AK+ALE TN + L D+P+ VQF+R +++
Sbjct:    5 ERCLIFKHFPPEISEDECVTFLKSLGATTAQYFGCSGSLKHCAYAEFASEQHAWNIIKNLHQKKILDRRLSVEFIQLSS--------VNIQK-TNPDESKEECLPVTTN---AFSAMWDTSFEASSRMYYEYPVASIDVLTNIVRSLASCPAFYNQVLHIMNKLHLPPPFEDPEQFPGDYLVISASDYAKMQTLIDNIQRLPKEENYDSGSVSEEMDLSSGPESELASATTCAQKSISVRRRFKVRKKPPTVLLSRLP-KTSKRKNVDVADLFE-------SHQAAKKL-NLPKILNVNSQRDHSNSLDESEGGFGLI-HTETKVERRHFLDGSTQNSQENHAS------IFSNFQLRKEQFSDEEHENFGDLIPLPSQPPLSSENMTNVTDNNPSNII----TVLSLDEIISNRLKDEDRKNYPVFAKYDTGTTTSRLYVKNLSQMVTEADLFAIFGVFSNGPVTDSSCKPRVSLDSTECFSIRLLTEGRMKGQAFIGLACESTAKQALEATNGYMLYDRPMVVQFARGAKA 505
[Close]
BLAST of RNA-binding protein 40 vs. TrEMBL
Match: A0A1S3IPT4 (RNA-binding protein 40 OS=Lingula unguis OX=7574 GN=LOC106166275 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.455e-45
Identity = 149/524 (28.44%), Postives = 234/524 (44.66%), Query Frame = 2 
Query:   44 TSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKV---KTNIKYGEADA--NIEKNANINNQMTNKIPE------WVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPF---TPEITFPGXXXXXXXTDVSTNRRMKRNRDKGIGTAEMEISSGNESEISDEEHFPQIKRQK--------------LSFPK-IPSNPLTNNYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIAS-------LPDTSINSNGNLSDSAV---ENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            ++L ++HLP   + ++  +L   F           G +++TA   FD  + A  AL  LH+  I+  RL+V+F K    K + K+ +++   +  K  N   Q T KI E       + +   IA K G++ P  P L Y YP P++ ILTNI  +L     FY Q LHLMNK + P PF   TP    P    + +         M+    + + T E EI S  + E   ++  P +KRQK              L  PK IPS  L+N  + +          D FE+ +  +   IE +  A        +P  ++    +     V   E GFG I                                         E +VK  ++   E S + + +   FIS  E+K G L   E   +N  K YD G  +++LYIKN++K V++  L  ++  ++DW++  +   F + + TEGRMKGQAFV+  ++ +A++AL  TN F L  KP+ VQF+R+++
Sbjct:    6 STLFIRHLPAELTEDEKGDLLKHFGAVRTKCMGTAGRLRHTAFAVFDSKEQAEKALERLHQLEILGCRLSVEFSKKQYEKFHPKFSDSETFKDKLKEENFKKQQTTKIEEEKVLENQIPSFGKIAEKLGIDYPYNPNLHYIYPPPDVNILTNIAHALATVPKFYVQVLHLMNKMNMPAPFGLVTPAPPLPEGRPIESRPSEPDWPDMEEM--EVVSTDESEIQSDTDDEAKGKKQQP-VKRQKHQKKRPRKKLKLHDLIIPKPIPSGTLSNAPKAE----------DVFEQPQPTAQKKIEIKVPAVADQIEPIVPSENLELEESFEKPPVQVEEGGFGKI-----------------------------------------EPVVKEAEADDGEESDSDVTQ---FISSSELKRGRLSSKEMKDINVFKRYDAGDQTSRLYIKNLAKHVTEKDLKYVFGRYIDWTSEEQTNMFDIRHMTEGRMKGQAFVTLPNEDLAQKALNETNGFVLNGKPMVVQFARSAK 472
[Close]
BLAST of RNA-binding protein 40 vs. TrEMBL
Match: A0A095A1H5 (RNA-binding protein 40 OS=Schistosoma haematobium OX=6185 GN=MS3_07714 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.542e-44
Identity = 156/541 (28.84%), Postives = 256/541 (47.32%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNL----LAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGXXXXXXXTDVSTNRRM---------KRNRDKGIGTAEMEISSGNESEIS--DEEHFPQIKRQKLS----FPKIPSNPLTNNYEF-KTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDT-SINSNGNLSDS--AVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKI---------------------VKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGF-----VDWSNPAEIA-----AFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            E  LI KHLP   + ++C          T  +F   G +++ A   F   + A   +  LH+++I++ RL+V+F++            ++EK +++N Q TN        L     A +  W  +     ++ Y YP  ++ +LTNIVRSL +   FY Q LH+MNK H P PF     FPG+ +V++ +D +  + +         + N D G  + EM++SSG ESE++  DE+      ++ +S    F     NP        KT   K + + + FE       SH   + + +LP   ++NS  + S+S    E GFG I   ET+    +  +  T+ SQ +H        +F +F+LRKE+                       KN  + +D N +N +      +SLDEI S  L   +  +      YD G  +++LY+KN+S+ V++  L +++  F      D S    ++      F +   TEGRMKGQAF+    +S AK+ALE TN + L D+P+ VQF+R +++
Sbjct:    5 ERCLIFKHLPPEINEDECLTFLKSLGATTSQYFGCSGSLKHCAYAEFASEQHAWNIIKNLHQKKILDRRLSVEFIQ------------SVEKLSSVNIQKTNPDKSKEECLPVTTSAFSAMWDTSFEASSRMYYEYPVVSIDVLTNIVRSLASCPAFYNQVLHIMNKLHLPPPFEDPEQFPGDYIVISASDYAKMQTLIGNIQRLPKEENYDSGSVSEEMDLSSGPESELASDDEKKATTCAQKSISVRRRFKVRKKNPTVLPSRLPKTSKRKNVDVAELFE-------SHQAAKKL-NLPKILNVNSQRDHSNSLDESEGGFGLI-HTETKVERRHFLDGPTQNSQENHAS------IFSNFQLRKEQFSDEEHENLEDLIPLPPQPPLSSKNMTNVTDNNPSNFV----TVLSLDEIISNRLKDEDRKNYPIFAKYDTGTTTSRLYVKNLSQMVTEADLFAIFGVFSNGPVTDSSCKPRVSLDSTECFSIRLLTEGRMKGQAFIGLACESTAKQALEATNGYMLYDRPMVVQFARGAKA 514
[Close]
BLAST of RNA-binding protein 40 vs. TrEMBL
Match: A0A5J4NG81 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Paragonimus westermani OX=34504 GN=DEA37_0000064 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.938e-44
Identity = 151/542 (27.86%), Postives = 250/542 (46.13%), Query Frame = 2 
Query:   50 LIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLLA--------IAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGXXXXXXXTDVSTNRRM------KRNRDKGIGTAEMEISSGNESEISDE--------------EHFPQIKRQKLSFPK--IPS---NPLTNNYE-FKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDTSINSNGNLSDSAVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVKNYDSKSDENSANHIRKP-------------DVFISLDEIKSGVLPVSEWHSVNAL-KNYDRGIPSNQLYIKNISKKVSKDCLISLYAGF-------VDWSNPAEIAA---FQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            L+ KH P+  +  +C +  +     +  +F   GP +N A+  F   K A   +  +H+R IV++RL V+F +    +     D+   +    N   +   P +  + L+        IAPKW +  PV  KL+Y YP   + +LTNIVR++++   FYTQ LHLMN+ H P PF     FPG   +   ++ +   +M      +   D    T  M++SSG ESE+  +              +   + KR+K S P   IPS    PL ++        +    + D FE     S   I   P  +LP +++ S  N   +    GFG +  P   +  +    N   TS+     N   ++  ++F+LRK+    + +S  DE+S NH+ +              D F SL++++   L   E  +     +NY+ G P+++LYIKN++  V++  L  +Y  F       +D+   A  ++   F +   T GRMKGQAF+S   +  A +ALE TN   L D+P+  QF+R +++
Sbjct:   15 LLFKHFPRELTEKECTDFLANLGALSTQYFGNRGPFKNCAVAEFPSLKHAWEVIKGVHQRLIVDSRLCVEFYRPNAPL-----DSVPSEGVQCNK--STGAPSFPESCLSKCGSHSSPIAPKWDIWVPVSKKLRYRYPSATVSVLTNIVRAMVSCPAFYTQVLHLMNRLHLPPPFGDSELFPG--TLTVTSEPTATEQMPPAPTSEPQNDGPDVTEAMDLSSGTESEMESDVETVGTSVSTTLMKQPLRRRKRKKTSQPTDFIPSTKNTPLPHSSRSLTVSRSSATNVCDLFETVTPSSKMQIHVPP--ALP-SAVQSGRNEFANVSTVGFGLLSHPTDMTTTVSSVVNTVNTSR----TNRPSDIHREEFRLRKK--TDSRESSPDEDS-NHVEQSVPEDDSDDELSQLDSF-SLNDLRVRRLSPEERQNYAVFARNYEPGEPTSRLYIKNLAPSVTERELYRVYGAFQFGPVTDLDFRPKAPSSSTDRFSIRLLTGGRMKGQAFISLQCELTAAQALEATNGLLLHDRPIVAQFARGAKA 536
[Close]
BLAST of RNA-binding protein 40 vs. TrEMBL
Match: A0A430QGE5 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein (Fragment) OS=Schistosoma bovis OX=6184 GN=DC041_0010262 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.747e-44
Identity = 156/544 (28.68%), Postives = 256/544 (47.06%), Query Frame = 2 
Query:   41 ETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNK-------IPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGXXXXXXXTDVSTNRRM---------KRNRDKGIGTAEMEISSGNESEIS--DEEHFPQIKRQKLS----FPKIPSNPLTNNYEF-KTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDT-SINSNGNLSDS--AVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVK---------------------NYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGF-----VDWSNPAEIA-----AFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            E  LI KH P   + ++C          T  +F   G +++ A   F   + A   +  LH+++I++ RL+V+F++            ++EK +++N Q TN        +P   N   A +  W  +     ++ Y YP  ++ ILTNIVRSL +   FY Q LH+MNK H P PF     FPG+ +V++ +D +  + +         + N D G  + EM++SSG ESE++  DE+      ++ +S    F      P        KT   K + + D FE       SH   + + +LP   ++NS  + S+S    E GFG I   ET+  + +  +  T+ SQ +H        +F +F+LRKE+                        N  + +D N +N +      +SLDEI S  L   +  +      YD G  +++LY+KN+S+ V++  L +++  F      D S    ++      F +   TEGRMKGQAF+    +S AK+ALE TN + L D+P+ VQF+R +++
Sbjct:   20 ERCLIFKHFPPEINEDECVTFLKSLGATTSQYFGCSGSLKHCAYAEFASEQHAWNIIKNLHQKKILDRRLSVEFIQ------------SVEKLSSVNIQKTNPDKSKEECLPVTTN---AFSAMWDTSFEASSRMYYEYPVVSIDILTNIVRSLASCPAFYNQVLHIMNKLHLPPPFEDPEKFPGDYLVISASDYAKMQTLIDNIQRLPKEENYDSGSVSEEMDLSSGPESELASDDEKKATTCAQKSISVRRRFKVRKKTPTVLPSRLPKTSKRKNVDVADLFE-------SHQAAKKL-NLPKILNVNSQRDHSNSLDESEGGFGLI-HTETKVEKRHFLDGPTQNSQENHAS------IFSNFQLRKEQFSDEEHENLEDLIPLPSQPPLSSGNMTNVTDNNPSNFV----TVLSLDEIISNRLKDEDRRNYPVFAKYDTGTTTSRLYVKNLSQMVTEADLFAIFGVFSNGPVTDSSCKPRVSLDSTECFSIRLLTEGRMKGQAFIGLACESTAKQALEATNGYMLYDRPMVVQFARGAKA 529
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:103039358])

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-23
Identity = 66/189 (34.92%), Postives = 100/189 (52.91%), Query Frame = 2 
Query:   23 NNDDIIET----SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANIN-------NQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTP 556
             ++D+++     +LIV+HLP   S  + E+L  +F    +   S  GP+++TA  TF     A+ AL  LH+ RI+   L V+F K + N+    + A  ++ A+         NQ    +P  ++N  +IAP  GL     P LKY YP P+  I+TNI  +L++   FY Q LHLMNK + P PF P
Sbjct:    4 QDEDVVKCKRSRTLIVRHLPADLSREEKEDLLKYFGASGVRVLSVKGPLKHTAFATFSSEISASKALKRLHQLRILGHTLVVEFAKDQDNVTVPNSSAVPDRGADQKAGKEKKENQQHPSVP-LIDN--SIAPALGLKFQTNPTLKYLYPPPSSAIVTNITHTLLSVPKFYVQVLHLMNKMNLPCPFGP 189

HSP 2 Score: 99.7525 bits (247), Expect = 5.326e-22
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 2 
Query: 1097 SKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            S+ +E+S      P  FIS  E++ G L   E   ++  KNY+ G P+ +LY+KN++K+V +  L  +Y  ++D S+  E   F +    EGRMKGQAFV   ++  A+ AL  TN + L DKP+ VQF+R+++
Sbjct:  360 SRQEESSGGEEDMPSEFISRRELEKGRLSRDEIKRMSVFKNYEPGEPTCRLYVKNVAKQVEEKDLKYIYGRYIDPSSEQERNMFDIVLMKEGRMKGQAFVGLPTEKSAERALRDTNGYVLHDKPLVVQFARSAR 493
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Match: rbm41 (RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-GENE-041114-107])

HSP 1 Score: 72.7886 bits (177), Expect = 2.405e-13
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2 
Query: 1211 LKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFV-DWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
             +NY RG PSN L +KN+S + S   L+SL++ F  D +NP       +     GR+KGQAF++F     A+ AL + N ++L+DKP+ ++F R
Sbjct:  347 FQNYQRGEPSNVLCVKNMSPRASLAQLVSLFSRFQKDDTNPI------LYRLLTGRLKGQAFITFCDIETAQAALNMLNGYRLLDKPLVIEFGR 434
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Match: rbm41 (RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-GENE-041114-107])

HSP 1 Score: 72.7886 bits (177), Expect = 2.432e-13
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2 
Query: 1211 LKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFV-DWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
             +NY RG PSN L +KN+S + S   L+SL++ F  D +NP       +     GR+KGQAF++F     A+ AL + N ++L+DKP+ ++F R
Sbjct:  335 FQNYQRGEPSNVLCVKNMSPRASLAQLVSLFSRFQKDDTNPI------LYRLLTGRLKGQAFITFCDIETAQAALNMLNGYRLLDKPLVIEFGR 422
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 50.447 bits (119), Expect = 9.769e-7
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCL-ISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P++ +YI N++ K+ K+ L  SLYA F  +    EI A +       +M+GQAFV F   + A  AL     F   +KP+ +Q+++
Sbjct:    5 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTM-----KMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAK 85
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:103032130])

HSP 1 Score: 50.447 bits (119), Expect = 1.105e-6
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCL-ISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P++ +YI N++ K+ K+ L  SLYA F  +    EI A +       +M+GQAFV F   + A  AL     F   +KP+ +Q+++
Sbjct:    5 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIIEIVALKTM-----KMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAK 85
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Sea Lamprey
Match: rnpc3 (RNA-binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:565672])

HSP 1 Score: 91.6633 bits (226), Expect = 6.196e-20
Identity = 45/122 (36.89%), Postives = 74/122 (60.66%), Query Frame = 2 
Query: 1133 KPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            +P  FIS  E+ SG +   E    +  KNY  G P+ +LY+KN+S++VS+  L  ++  +VD+S+  E   F V    EGRMKGQAFV   S+  A++AL   + + L  +P+ +Q++R+++
Sbjct:  386 QPSQFISRKELSSGRVSREEMAKSSVFKNYSAGEPTCRLYVKNLSRQVSEQDLKHIFGRYVDFSSDVEKNMFDVRLMREGRMKGQAFVGLPSEREAQKALRDAHGYVLHGRPLVIQYARSAR 507

HSP 2 Score: 78.5666 bits (192), Expect = 7.917e-16
Identity = 57/181 (31.49%), Postives = 82/181 (45.30%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEA--DANIEKNANINNQMTNKIP--EWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYT-QTLHLMNKFHFPVPFTPEITFPG 574
            +L+V+ LP+    ++  +L   F    +      G M+N A  TF     A  AL  LH+  ++ + L V+F + +      E    A  E   +I        P     + L AIAPK G+  P  P L+Y YP P   IL NI  +L ++  F   Q LHLMNK + P PF   +T P 
Sbjct:    9 TLLVRRLPRALPADEGRQLLRHFGASDVRIMGPAGKMRNAAFATFPSEAAAAKALRRLHQLEVLGSVLAVEFARGQDAASAREPLPSAPGETTKHIPGSHAESAPVLSKTSQLDAIAPKLGVTYPANPLLRYRYPPPTTNILANICHALSSSPRFLCLQVLHLMNKMNLPAPFG-HVTSPA 188
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Nematostella
Match: EDO43102 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZI8])

HSP 1 Score: 90.1225 bits (222), Expect = 2.550e-19
Identity = 42/119 (35.29%), Postives = 74/119 (62.18%), Query Frame = 2 
Query: 1145 FISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            F+S  E+K+  +   E  +++  KNY  G P+++LY+KN+S++V    L+ ++  +VD+S   +   F +    EGRMKGQAFV+  S+  AK AL   + + L  KP+ +QF+R++++
Sbjct:  354 FVSSRELKANRMSEKEIKAMSQFKNYSPGDPTSRLYVKNLSRQVEDKDLMYVFGRYVDFSVGEQKDRFDIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPIVIQFARSAKA 472

HSP 2 Score: 87.4261 bits (215), Expect = 2.002e-18
Identity = 61/180 (33.89%), Postives = 87/180 (48.33%), Query Frame = 2 
Query:   50 LIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKV-----------KTNIKYGEADANIEKNANINNQM--TNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPF 550
            L V+HLP   S+ D E+ F  F  +++    + G M++TA + F     A+ AL  LH+  I+ + L V++              + + K   A  N +   ++ ++M   N+I         IAPK GL  P  P L Y YP P   ILTNI  +L     FYTQ LHLMNK + P PF
Sbjct:   12 LFVRHLPNVLSNADKEDFFKHFGARSVICMGRSGKMRDTAFVEFPDDTTASKALRRLHQLEILGSALVVEYATKQQEQTAAQHSNRMSPKKEAASENSKDQQDVTSEMDKQNRIEH------GIAPKLGLKYPGNPHLTYLYPPPTASILTNIAHTLACVPKFYTQVLHLMNKMNLPAPF 185
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Nematostella
Match: EDO34706 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNN4])

HSP 1 Score: 52.7582 bits (125), Expect = 2.164e-7
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 2 
Query: 1160 EIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSF 1402
            EI    L + E   +   K+Y  G PS  L++KN+S KV ++ LI L+  F    N A    F++    +GRMKGQAFV+F
Sbjct:  264 EILHNRLSIDEIKQIPRFKDYAPGEPSKTLFLKNLSNKVKEEDLIRLFLRF--QQNGAPKLVFRL---MKGRMKGQAFVTF 339
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Match: rnpc3 (RNA binding region (RNP1, RRM) containing 3 [Source:NCBI gene;Acc:101168252])

HSP 1 Score: 97.4413 bits (241), Expect = 3.744e-21
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 2 
Query: 1100 KSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            + +ENSA+        IS  E++ G L   E   ++  KNY  G P+ +LY+KNISK+V +  L  +Y  ++D S+  E   F V    EGRMKGQAF+   ++  A++AL  TN F L DKP+ VQF+R+++
Sbjct:  353 QQEENSADGDDLVSGVISRKELEKGRLAKDEMKRMSVFKNYGAGEPTCRLYVKNISKQVEEKDLRYIYGRYIDPSSEEERNMFDVVLMKEGRMKGQAFIGLPNEQSAEKALRETNGFVLHDKPLVVQFARSAR 485

HSP 2 Score: 91.2781 bits (225), Expect = 3.094e-19
Identity = 62/181 (34.25%), Postives = 92/181 (50.83%), Query Frame = 2 
Query:   47 SLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKY------GEADANIEKNANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFP 571
            +L+V+HLP   S ++ E+L  +F  +++  FS  G M++ A  TF     A+ AL  LH+  I++ +L V+F K + NI         ++  N+++           IP        +AP  GL     P LKY YP P+  ILTNIV +L++    Y Q LHLMNK + P PF P    P
Sbjct:   15 TLLVRHLPSELSPDEKEDLLKYFGAESVRVFSNHGRMKHAAFATFKTKTLASKALTRLHQLEILDQKLVVEFAKGQDNITVLRDPPVSDSAKNVKEKQKTKESTQPHIPLIET---GVAPNLGLKYQSNPTLKYLYPPPSNSILTNIVHALISVPKLYVQVLHLMNKMNLPCPFGPVTARP 192
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Match: rbm41 (RNA binding motif protein 41 [Source:NCBI gene;Acc:101169479])

HSP 1 Score: 64.6994 bits (156), Expect = 7.896e-11
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 2 
Query: 1199 SVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQ 1498
            S+   +NY  G PS  L +KN+S   S   L++L++ F         AA  +     GRMKGQAFV+      A+ AL L + ++L+ KP+ V+F    Q
Sbjct:  324 SIPRFRNYQPGKPSKVLCVKNVSTHASLAQLVALFSRFEKKD-----AAPILYRLLTGRMKGQAFVTLPDTETAQHALHLVHGYRLLGKPLVVEFGHERQ 418
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 49.2914 bits (116), Expect = 2.349e-6
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCLI-SLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P++ +YI N+++K+ KD L  SLYA F  +    +I   +       +MKGQAFV F   + A  AL     F   DKP+ +Q+S+
Sbjct:    8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTL-----KMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSK 88
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Match: snrpb2 (small nuclear ribonucleoprotein polypeptide B2 [Source:NCBI gene;Acc:101174159])

HSP 1 Score: 49.2914 bits (116), Expect = 2.771e-6
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCL-ISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P+  +YI NI+ KV K+ L  SLYA F  +     + A +       RM+GQAFV F   + A  AL     F   +KP+ +Q+++
Sbjct:    5 PNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTM-----RMRGQAFVVFKELAAATNALRQLQGFPFYNKPMRIQYAK 85
[Close]
BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Match: snrpa (small nuclear ribonucleoprotein polypeptide A [Source:NCBI gene;Acc:101155621])

HSP 1 Score: 49.2914 bits (116), Expect = 4.143e-6
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 2 
Query: 1235 PSNQLYIKNISKKVSKDCLI-SLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSR 1489
            P++ +YI N+++K+ KD L  SLYA F  +    +I   +       +MKGQAFV F   + A  AL     F   DKP+ +Q+S+
Sbjct:    8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTL-----KMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSK 88
[Close]
BLAST of RNA-binding protein 40 vs. Planmine SMEST
Match: SMESG000039309.1 (SMESG000039309.1)

HSP 1 Score: 966.066 bits (2496), Expect = 0.000e+0
Identity = 494/494 (100.00%), Postives = 494/494 (100.00%), Query Frame = 2 
Query:   20 MNNDDIIETSLIVKHLPKFFSHNDCEELXXXXXXXXXXXXXXPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGXXXXXXXTDVSTNRRMKRNRDKGIGTAEMEISSGNESEISDEEHFPQIKRQKLSFPKIPSNPLTNNYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDTSINSNGNLSDSAVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 1501
            MNNDDIIETSLIVKHLPKFFSHNDCEELFSFFKTKTITFFSKPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGNVVVVNNTDVSTNRRMKRNRDKGIGTAEMEISSGNESEISDEEHFPQIKRQKLSFPKIPSNPLTNNYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDTSINSNGNLSDSAVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS
Sbjct:    1 MNNDDIIETSLIVKHLPKFFSHNDCEELFSFFKTKTITFFSKPGPMQNTAIITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKNANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNIVRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGNVVVVNNTDVSTNRRMKRNRDKGIGTAEMEISSGNESEISDEEHFPQIKRQKLSFPKIPSNPLTNNYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDTSINSNGNLSDSAVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLRKEKIVKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKNYDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTEGRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS 494
The following BLAST results are available for this feature:
BLAST of RNA-binding protein 40 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RNPC32.789e-1732.60RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
RNPC32.789e-1732.60RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
RNPC32.933e-1732.60RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
RBM411.345e-1432.86RNA binding motif protein 41 [Source:HGNC Symbol;A... [more]
RBM411.472e-1432.86RNA binding motif protein 41 [Source:HGNC Symbol;A... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA-binding protein 40 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG442491.624e-1136.11gene:FBgn0265184 transcript:FBtr0339103[more]
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BLAST of RNA-binding protein 40 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnpc33.953e-2238.84RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
rnpc34.944e-2134.59RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
rnpc34.944e-2134.59RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
rnpc34.944e-2134.59RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
rbm412.191e-1437.39RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnpc35.794e-2036.36RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
rnpc34.132e-1735.96RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
tubgcp51.849e-633.66tubulin gamma complex associated protein 5 [Source... [more]
tubgcp52.522e-636.78tubulin gamma complex associated protein 5 [Source... [more]
slc17a65.367e-634.88solute carrier family 17 member 6 [Source:Xenbase;... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rnpc37.753e-1633.06RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
Rnpc39.501e-1633.06RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
Rnpc39.501e-1633.06RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
Rnpc31.357e-1332.23RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
Rbm411.703e-1334.43RNA binding motif protein 41 [Source:MGI Symbol;Ac... [more]
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BLAST of RNA-binding protein 40 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|F1Q8J0|RNPC3_DANRE3.732e-2034.59RNA-binding region-containing protein 3 OS=Danio r... [more]
sp|Q4G055|RNPC3_RAT1.019e-1934.25RNA-binding region-containing protein 3 OS=Rattus ... [more]
sp|Q3MHP0|RNPC3_BOVIN1.652e-1733.15RNA-binding region-containing protein 3 OS=Bos tau... [more]
sp|Q96LT9|RNPC3_HUMAN1.339e-1632.60RNA-binding region-containing protein 3 OS=Homo sa... [more]
sp|Q5R6C7|RNPC3_PONAB1.364e-1632.60RNA-binding region-containing protein 3 OS=Pongo a... [more]
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BLAST of RNA-binding protein 40 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183MWQ25.294e-4629.08RRM domain-containing protein OS=Schistosoma margr... [more]
A0A1S3IPT42.455e-4528.44RNA-binding protein 40 OS=Lingula unguis OX=7574 G... [more]
A0A095A1H52.542e-4428.84RNA-binding protein 40 OS=Schistosoma haematobium ... [more]
A0A5J4NG812.938e-4427.86U11/U12 small nuclear ribonucleoprotein 65 kDa pro... [more]
A0A430QGE56.747e-4428.68U11/U12 small nuclear ribonucleoprotein 65 kDa pro... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnpc32.465e-2334.92RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
rbm412.405e-1339.36RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-... [more]
rbm412.432e-1339.36RNA binding motif protein 41 [Source:ZFIN;Acc:ZDB-... [more]
snrpb29.769e-733.72small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpb21.105e-633.72small nuclear ribonucleoprotein polypeptide B2 [So... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rnpc36.196e-2036.89RNA-binding region (RNP1, RRM) containing 3 [Sourc... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA-binding protein 40 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO431022.550e-1935.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO347062.164e-739.51Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding protein 40 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rnpc33.744e-2139.85RNA binding region (RNP1, RRM) containing 3 [Sourc... [more]
rbm417.896e-1135.00RNA binding motif protein 41 [Source:NCBI gene;Acc... [more]
snrpa2.349e-636.05small nuclear ribonucleoprotein polypeptide A [Sou... [more]
snrpb22.771e-634.88small nuclear ribonucleoprotein polypeptide B2 [So... [more]
snrpa4.143e-636.05small nuclear ribonucleoprotein polypeptide A [Sou... [more]
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BLAST of RNA-binding protein 40 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000039309.10.000e+0100.00SMESG000039309.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015751 ID=SMED30015751|Name=RNA-binding protein 40|organism=Schmidtea mediterranea sexual|type=transcript|length=1557bp
TATTTTATAAAATAATAAAATGAACAATGATGATATTATAGAAACTTCAT
TAATTGTAAAACATCTTCCTAAATTTTTCAGTCACAACGATTGTGAAGAA
TTATTTTCCTTTTTTAAAACTAAAACTATCACATTTTTTAGTAAACCTGG
ACCCATGCAGAATACAGCAATTATAACGTTTGATTGCTTCAAAGATGCAA
ACGCAGCTCTCTTTTGTTTACACGAACGTAGAATTGTAAATACACGCCTT
AATGTTCAATTTTTGAAAGTTAAAACCAATATTAAATATGGTGAGGCAGA
TGCAAATATTGAAAAGAATGCTAACATTAATAATCAAATGACAAACAAAA
TACCTGAATGGGTTAATAATCTGTTAGCAATTGCTCCAAAATGGGGCCTT
AATGGTCCTGTACAACCAAAATTAAAATATAATTATCCGAAACCAAACTT
AGTAATTCTTACTAATATTGTTAGATCTTTGATGGCAAACGAAAATTTTT
ATACACAGACTCTCCATCTGATGAATAAGTTCCATTTTCCGGTGCCATTT
ACGCCTGAAATAACCTTTCCCGGTAACGTGGTTGTTGTCAATAATACCGA
TGTATCAACCAATAGGCGTATGAAACGTAACCGAGACAAAGGGATTGGAA
CTGCAGAAATGGAAATTTCTAGTGGAAATGAGAGTGAGATATCAGATGAA
GAGCATTTTCCCCAAATTAAGCGACAGAAGCTTTCTTTTCCGAAAATTCC
ATCTAATCCATTGACTAATAATTATGAGTTTAAAACTCAACCGACTAAGT
GCATTCCATTAGTTGATGCATTCGAAAGGAAAGAGGAAAAATCCGGCTCA
CACATTGAATTTCGTCCTATAGCCTCATTGCCAGACACGAGTATAAATAG
TAATGGAAATCTATCGGATTCCGCTGTTGAAAATGGGTTCGGTACAATTC
CTAAACCTGAAACAGAATCTGTAGAATTATACCCCAAAGAAAATATCACC
GAAACAAGTCAAATTAGTCATTTAATTAATGAAAGCATTAATTTGATGTT
TGATGATTTCAAATTAAGAAAAGAAAAAATTGTAAAAAATTATGACTCAA
AAAGTGATGAAAATTCAGCCAATCATATTAGGAAACCTGATGTTTTTATT
TCATTGGATGAAATAAAGTCAGGAGTTCTCCCTGTGTCAGAGTGGCACTC
AGTGAATGCTTTGAAAAATTACGATCGTGGCATTCCCTCAAATCAATTAT
ATATAAAAAATATATCGAAAAAAGTTTCTAAAGATTGCCTAATCAGTCTA
TACGCTGGATTTGTTGATTGGTCAAATCCGGCTGAAATAGCAGCATTCCA
AGTGAATTATTTCACCGAGGGCAGAATGAAAGGCCAGGCTTTCGTGTCGT
TTATTTCTCAATCTGTTGCCAAGGAAGCCCTGGAATTGACGAATGCCTTC
AAATTGATTGATAAGCCCGTCTCTGTTCAGTTTTCAAGGAATTCTCAATC
TTGATTATATCTTTGTTCATTTCAATTATAATTTTGTTTGACTTCATTAA
AATCTAC
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protein sequence of SMED30015751-orf-1

>SMED30015751-orf-1 ID=SMED30015751-orf-1|Name=SMED30015751-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=495bp
MNNDDIIETSLIVKHLPKFFSHNDCEELFSFFKTKTITFFSKPGPMQNTA
IITFDCFKDANAALFCLHERRIVNTRLNVQFLKVKTNIKYGEADANIEKN
ANINNQMTNKIPEWVNNLLAIAPKWGLNGPVQPKLKYNYPKPNLVILTNI
VRSLMANENFYTQTLHLMNKFHFPVPFTPEITFPGNVVVVNNTDVSTNRR
MKRNRDKGIGTAEMEISSGNESEISDEEHFPQIKRQKLSFPKIPSNPLTN
NYEFKTQPTKCIPLVDAFERKEEKSGSHIEFRPIASLPDTSINSNGNLSD
SAVENGFGTIPKPETESVELYPKENITETSQISHLINESINLMFDDFKLR
KEKIVKNYDSKSDENSANHIRKPDVFISLDEIKSGVLPVSEWHSVNALKN
YDRGIPSNQLYIKNISKKVSKDCLISLYAGFVDWSNPAEIAAFQVNYFTE
GRMKGQAFVSFISQSVAKEALELTNAFKLIDKPVSVQFSRNSQS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..80
e-value: 0.14
score: 14.1
coord: 409..487
e-value: 8.6E-4
score: 28.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 408..491
score: 12.185
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 403..494
e-value: 5.0E-14
score: 54.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 5..109
e-value: 1.1E-6
score: 30.6
NoneNo IPR availablePANTHERPTHR16105UNCHARACTERIZEDcoord: 7..493
NoneNo IPR availablePANTHERPTHR16105:SF0RNA-BINDING PROTEIN 40coord: 7..493
NoneNo IPR availableCDDcd12239RRM2_RBM40_likecoord: 407..489
e-value: 1.79721E-28
score: 105.724
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 390..492
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 9..83