SMED30015747

Overview
NameSMED30015747
Smed IDSMED30015747
Length (bp)1576
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30015747 (SMED30015747) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30015747 (SMED30015747) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30015747

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30015747 dd_Smed_v4_11190_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30015747 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001058:71996..73571 +7880
Homology
BLAST of SMED30015747 vs. Planmine SMEST
Match: SMESG000040960.1 (SMESG000040960.1)

HSP 1 Score: 868.996 bits (2244), Expect = 0.000e+0
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 2
Query:   53 MINYFNNIEIKTKTILEKXXXXXXXXXXXXXXVTILGLIHQYFVKILSISYYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWXXXXXXXXXXXXXXXXXXXXXXXXXSVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNFSLIVTLAFGIGFLSCKFFFYYYHTYWTMXXXXXXXXXXXXXXXXXXXYATSEAATWPVCSVKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPLKDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRYLIFIANQKLVLGEKQ 1552
            MINYFNNIEIKTKTILEKLIFLIGLFLISFGSVTILGLIHQYFVKILSISYYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWIINFSNMSAIFIIIISQIFYILVSISVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNFSLIVTLAFGIGFLSCKFFFYYYHTYWTMILSVILEINISIILLICSLYATSEAATWPVCSVKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPLKDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRYLIFIANQKLVLGEKQ
Sbjct:    1 MINYFNNIEIKTKTILEKLIFLIGLFLISFGSVTILGLIHQYFVKILSISYYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWIINFSNMSAIFIIIISQIFYILVSISVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNFSLIVTLAFGIGFLSCKFFFYYYHTYWTMILSVILEINISIILLICSLYATSEAATWPVCSVKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPLKDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRYLIFIANQKLVLGEKQ 500          
BLAST of SMED30015747 vs. Planmine SMEST
Match: SMESG000051898.1 (SMESG000051898.1)

HSP 1 Score: 129.413 bits (324), Expect = 4.347e-32
Identity = 118/457 (25.82%), Postives = 223/457 (48.80%), Query Frame = 2
Query:  197 ISYYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWXXXXXXXXXXXXXXXXXXXXXXXXXSVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNFS-----------LIVTLAFGIGFLSCKFFFYYYHTYWTMXXXXXXXXXXXXXXXXXXXYATSEAATWPVCSVKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPLKDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRYLIFIANQKL 1534
            + + W  +   GSV N++   +I+   Y+NH  RN F K  + N +IL+ FC P   F+I +L+I+ +  +Y+  C G   ++F  T+ IY++ +++F+A+ + V D GE W +NF NM    II+ S +F I+ + S+EQ+     ++N +  + SCI +L  I++    L   + + + K+ ++FG      +      +Y  L  +K +    K +  K    D++  S           +  TL FGI FL+     Y     +   + + +E+   I ++  +++             +++ FN  I+W+GL GQ V    +I   I  +  E + + + +L +Y+ +++   VQ + E++L+E  W N+  +  S +     ++ +NN      ++  +    L P +  +  K+F     NF  +F VLQR+HGF + V Y  F+   K+
Sbjct:   45 LEFVWAPLYICGSVFNLLVVFLILFALYMNHKYRNLFNKCPMENQDILYYFCIPATIFVISTLIITLVKSLYIAECNGKMIVLFIFTSVIYFVVIVVFIAETNSVFDFGESWALNFVNMMVSLIIVSSLVFNIVFNTSLEQMDYFAAVINKSLINQSCIDNLPFIAQRTYYLWVSVRIFLYKSIVLFGLFSTVFIFKSLYRNYLYLQFYKYDG---KTNDLKSNDEDVNRNSQKNNLKKLYLKIFSTLLFGILFLAINIAVYIRSKEYLEHILIGMEMFSYISMIGLTIFMMKNLIFTDFSISRIYVFNEVIIWLGLCGQLVHCFAVIAAYIYLMYNEVNAIYIAILIKYVLQILSNIVQSVFEAILVEKLWNNKIGKNFSTMAFGAFYIAVNNFVYIFTDLILVYKEFLLPFEGSVKLKLFVCLFFNFGNIFSVLQRIHGFSIHVSYFTFLYRNKI 498          
BLAST of SMED30015747 vs. Planmine SMEST
Match: SMESG000040945.1 (SMESG000040945.1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.839e-13
Identity = 103/428 (24.07%), Postives = 203/428 (47.43%), Query Frame = 2
Query:  230 GSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWXXXXXXXXXXXXXXXXXXXXXXXXXSVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNFSLIVTLAFGIGFLSCKFFFYYYHTYWTMXXXXXXXXXXXXXXXXXXXYATSEAATWPVCSVKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWE--NRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPLKDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRY 1507
            G+  N++S+ +II N Y N  NRN F K ++ N  IL+  C P +  I+  L I  + ++ L      G+ IF+ ++ I +++++  L + +   D GE+W IN  NM+ I   IIS +  ++  + ++Q+   +  LN++    S   +L +  +++  L   L+    K  +IF   C   LI P ++H+ +L N K+ Q + +       +  + N SLI++  F +    C    Y + +  ++ L  +L ++  I   +   +        P    K+   +   +W+GL GQF+ S+      I  + +         + +Y +++I+   Q I  + ++E +W+  N+KL  +   ++  LFL+ +N     L+   +  +    +      ++F     +  M+F VL R+HG ++FV Y
Sbjct:   67 GAFTNVMSSVLIIANMYHNFNNRNFFEKHKIPNQSILYLICLPSLVLILVGLSIVIMKEVLLKENSSVGKEIFSVSSLILFLSILSLLIEANMYKDSGEKWSINLLNMTTILFTIISLVNNLIYPLLIDQVQNYIVALNVS-MAKSETSNLYSALESLFELNSNLV---YKIIIIFNISCIFFLINPLVYHFKNLQNSKVSQLVQEEIPEDEEQPKLPNSSLILSFIFIVAICVC--IIYDWTSKQSLELINLLIVSTYIASFMHIYFILKNIQKCPRKD-KVNSIHYVFMWLGLFGQFIQSIAGSYAGIRLMLSNSDQNYWTRILQYFTQVIECFAQNICVTFIIERKWQPFNKKLWYS--FLSCPLFLVCSNTGFMFLSFYLLYSH--SAVSGQFHVQLFESGFNHLGMIFSVLHRIHGAIVFVYY 483          
BLAST of SMED30015747 vs. Planmine SMEST
Match: SMESG000040959.1 (SMESG000040959.1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.245e-8
Identity = 110/454 (24.23%), Postives = 194/454 (42.73%), Query Frame = 2
Query:  230 GSVMNIVSASIIILNEYL--NHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWXXXXXXXXXXXXXXXXXXXXXXXXXSVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAW-----LIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNF---------SLIVTLAFGIGFLSCKFFFYYYHTYWTMXXXXXXXXXXXXXXXXXXXYATSEAA---TWPVCS--VKLFQFNNAIVWIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNI-------ARINDNILPPLKDPISFKIFFIFTTNFSM--VFCVLQRLH-GFLLF 1498
            G V+NIV   +I++++Y    H N   F + +  N  I++  C P+   II  ++I+   D Y         + F +   +Y+ ++++ L + +   D GE W I FSN+ A+   I SQI+++ +  S +Q       +N +D    C      +SKT   +    L   ++ +     L+ G++C  LL+  F   Y +L  +K E   +       ++  +S F         S+  +    +GF S K F Y            I  I    +  +   ++ ++      WP  S       FN  ++W G +GQ    +T ++N         +IL        L + +Q SVQ I ES+L+E    ++ +  ++  I +   L I N    I+NI         +ND     L DP  F+ +F+    F +  +F ++Q+ H  FLLF
Sbjct:   51 GGVLNIVFIVLIVISKYFIRRHKNAKPFGETQAENPIIIYFICLPMTVSIIICMIITLFKDTYKPNSTR-DEIFFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQEC----QNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKEDIFV----LPNMEEKLSRFGKTMIFICGSVNFSYCMALGFESNKTFRY------------ITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQ-TMQLTALINYYDSSHKSLTIL------RNLIQFVQTSVQTIFESILIEKSQPSKNILFST--ITSLSVLAILNFQFGIINIWLFGQMLKDLNDK---SLNDP-KFQYYFMIILVFRVGTIFTIMQKFHSSFLLF 470          
The following BLAST results are available for this feature:
BLAST of SMED30015747 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015747 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000040960.10.000e+0100.00SMESG000040960.1[more]
SMESG000051898.14.347e-3225.82SMESG000051898.1[more]
SMESG000040945.17.839e-1324.07SMESG000040945.1[more]
SMESG000040959.11.245e-824.23SMESG000040959.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015747 ID=SMED30015747|Name=SMED30015747|organism=Schmidtea mediterranea sexual|type=transcript|length=1576bp
CTTGAATTCGTTCTAATATAATTTTACTTTCATTACTTTTACCATTTCAA
AAATGATTAATTACTTCAATAATATTGAGATTAAAACAAAAACGATTTTA
GAAAAATTAATTTTTTTAATTGGATTATTTTTAATTTCTTTCGGTTCGGT
AACAATTCTTGGACTGATCCACCAATATTTTGTGAAAATTTTGTCCATTT
CTTACTATTGGAATTCAATGATATTTTCCGGGTCGGTGATGAATATCGTT
TCAGCTTCTATCATTATACTCAATGAATATTTGAATCATTTAAACCGAAA
TCATTTCTACAAACTAAGAGTGTTAAACAGTGAGATCCTTCACACGTTTT
GTTTCCCGTTAGTATCGTTTATTATTGGGTCTCTGTTGATTTCGACCATC
AACGACATCTACCTTATTAGGTGCATTGGATACGGAAGAATGATATTTGC
ATCAACGAACTCGATTTACTATATAACTGTTATGATTTTCCTTGCGAAAT
ACCATTTTGTTTGTGATGATGGTGAAGAATGGATCATAAATTTCAGCAAC
ATGTCTGCCATATTCATTATAATTATCAGTCAGATTTTCTATATTTTAGT
TTCGATATCCGTTGAACAAATAACTTTGATAGTTCCGATTTTGAATATAA
CAGATTTTGACACGTCTTGCATTCAACATTTGAATACTATTTCCAAAACG
ATAGATAATTTAACAGGTAGATTATTGATGCCTATGATGAAAGCGTGGTT
AATTTTTGGAACCCTTTGTTGTACCCTTCTAATAATGCCATTCTTACATC
ATTATTCATCTCTTAACAATCATAAAATCGAACAATCCATCATTAAAAAT
AGTTCATTCAAGGGGGTAAAGCATGATATTTCAAATTTTTCATTGATTGT
TACACTAGCATTCGGCATCGGATTTCTCTCCTGTAAATTTTTTTTTTATT
ATTATCACACTTATTGGACTATGATATTATCTGTCATTTTAGAAATCAAT
ATTTCTATAATTTTACTCATTTGTTCTTTATATGCAACATCAGAAGCAGC
AACATGGCCGGTTTGCTCAGTGAAATTATTTCAATTTAATAACGCTATAG
TGTGGATCGGATTGATAGGCCAATTCGTCTTCTCTGTGACCATGATAATG
AATTCAATCAGTCATTTATCCACAGAATTCTCGATTTTAGGTCTTTGTGT
TTTATTTGAATATTTATCTAAAATGATCCAGATTTCCGTTCAATTTATTC
TAGAATCCCTTCTCCTCGAAACTCAATGGGAAAACAGAAAATTGGAAAAG
AATTCAAAGTTAATTAACGCATTTCTATTTCTTATGATAAATAATTTGTG
TTTGACTATACTCAATATTGCACGGATTAATGATAATATTTTACCCCCAC
TAAAAGATCCAATATCTTTTAAAATATTTTTCATTTTTACTACCAATTTC
TCAATGGTGTTTTGTGTGCTGCAAAGATTACACGGATTTTTATTATTTGT
GCGCTATTTAATTTTTATAGCCAATCAAAAATTAGTATTGGGCGAGAAAC
AATGAATTTATAATTTTAATTATGTG
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protein sequence of SMED30015747-orf-1

>SMED30015747-orf-1 ID=SMED30015747-orf-1|Name=SMED30015747-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=501bp
MINYFNNIEIKTKTILEKLIFLIGLFLISFGSVTILGLIHQYFVKILSIS
YYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFC
FPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKY
HFVCDDGEEWIINFSNMSAIFIIIISQIFYILVSISVEQITLIVPILNIT
DFDTSCIQHLNTISKTIDNLTGRLLMPMMKAWLIFGTLCCTLLIMPFLHH
YSSLNNHKIEQSIIKNSSFKGVKHDISNFSLIVTLAFGIGFLSCKFFFYY
YHTYWTMILSVILEINISIILLICSLYATSEAATWPVCSVKLFQFNNAIV
WIGLIGQFVFSVTMIMNSISHLSTEFSILGLCVLFEYLSKMIQISVQFIL
ESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNIARINDNILPPL
KDPISFKIFFIFTTNFSMVFCVLQRLHGFLLFVRYLIFIANQKLVLGEKQ
*
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InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 19..41
NoneNo IPR availableTMHMMTMhelixcoord: 377..399
NoneNo IPR availableTMHMMTMhelixcoord: 160..182
NoneNo IPR availableTMHMMTMhelixcoord: 348..367
NoneNo IPR availableTMHMMTMhelixcoord: 305..327
NoneNo IPR availableTMHMMTMhelixcoord: 466..488
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 279..301
NoneNo IPR availableTMHMMTMhelixcoord: 231..253
NoneNo IPR availableTMHMMTMhelixcoord: 420..442
NoneNo IPR availableTMHMMTMhelixcoord: 131..153