FGFR1 oncogene partner

Overview
NameFGFR1 oncogene partner
Smed IDSMED30015650
Length (bp)1049
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of FGFR1 oncogene partner (SMED30015650) t-SNE clustered cells

Violin plots show distribution of expression levels for FGFR1 oncogene partner (SMED30015650) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of FGFR1 oncogene partner (SMED30015650) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for FGFR1 oncogene partner (SMED30015650) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30015650

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30015650h1SMcG0014390 dd_Smed_v4_5371_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30015650h1SMcG0014390 dd_Smed_v4_5371_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30015650h1SMcG0014390 dd_Smed_v4_5371_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
epidermisSMED30015650h1SMcG0014390 dd_Smed_v4_5371_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Human
Match: FGFR1OP (FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012])

HSP 1 Score: 69.707 bits (169), Expect = 1.196e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-GLEGRENLARDL-GIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Human
Match: FGFR1OP (FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012])

HSP 1 Score: 69.707 bits (169), Expect = 1.464e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-GLEGRENLARDL-GIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Human
Match: FGFR1OP (FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012])

HSP 1 Score: 69.707 bits (169), Expect = 1.568e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-GLEGRENLARDL-GIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Zebrafish
Match: fgfr1op (FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1])

HSP 1 Score: 70.0922 bits (170), Expect = 8.567e-13
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 2 
Query:  143 SHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            +  D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L   L+ DFLQ  NL  TL+VF+ E  +  LN  D   ++     +     +  SPLL   ++   ++
Sbjct:    4 TEEDTELRDLLIQNLENSGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKSLNTKDGRLVAGLITDFLQVFNLDFTLAVFQPE--ISTLNGLDSREVLSKELGISESEVNKNSPLLLELVKRGRHR 132
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Zebrafish
Match: fgfr1op (FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1])

HSP 1 Score: 70.0922 bits (170), Expect = 8.593e-13
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 2 
Query:  143 SHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            +  D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L   L+ DFLQ  NL  TL+VF+ E  +  LN  D   ++     +     +  SPLL   ++   ++
Sbjct:    4 TEEDTELRDLLIQNLENSGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKSLNTKDGRLVAGLITDFLQVFNLDFTLAVFQPE--ISTLNGLDSREVLSKELGISESEVNKNSPLLLELVKRGRHR 132
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Xenopus
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:549512])

HSP 1 Score: 65.4698 bits (158), Expect = 4.151e-11
Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDS--KIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N++KA+LR+ V L L + + +  K P+ ++   ++  +N  +G+L  +L  +FLQ  NL  TL+VF+ EA +E    +DR+ + +  +  I ++E  KS PL    +R  + K
Sbjct:    7 DTELRDLLIQTLENNGILNKIKAELRSSVFLALEEQEKTQNKTPLVNE--GLKKFLNTRDGRLVANLFTEFLQFFNLDFTLAVFQPEASLEN-GYDDRNHLAK--ELGIVESEGVKSGPLALELVRRCHQK 132
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Xenopus
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:549512])

HSP 1 Score: 65.0846 bits (157), Expect = 4.322e-11
Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDS--KIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N++KA+LR+ V L L + + +  K P+ ++   ++  +N  +G+L  +L  +FLQ  NL  TL+VF+ EA +E    +DR+ + +  +  I ++E  KS PL    +R  + K
Sbjct:    7 DTELRDLLIQTLENNGILNKIKAELRSSVFLALEEQEKTQNKTPLVNE--GLKKFLNTRDGRLVANLFTEFLQFFNLDFTLAVFQPEASLEN-GYDDRNHLAK--ELGIVESEGVKSGPLALELVRRCHQK 132
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Mouse
Match: Fgfr1op (Fgfr1 oncogene partner [Source:MGI Symbol;Acc:MGI:1922546])

HSP 1 Score: 70.4774 bits (171), Expect = 5.044e-13
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF  E    +  L  R+++ Q+   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--NLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQ-GLEGRENLAQD-LGIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Mouse
Match: Fgfr1op (Fgfr1 oncogene partner [Source:MGI Symbol;Acc:MGI:1922546])

HSP 1 Score: 70.4774 bits (171), Expect = 5.831e-13
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF  E    +  L  R+++ Q+   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--NLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQ-GLEGRENLAQD-LGIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Match: sp|Q66JX5|FR1OP_MOUSE (FGFR1 oncogene partner OS=Mus musculus OX=10090 GN=Fgfr1op PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.079e-12
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF  E    +  L  R+++ Q+   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--NLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQ-GLEGRENLAQD-LGIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Match: sp|Q4R7V3|FR1OP_MACFA (FGFR1 oncogene partner OS=Macaca fascicularis OX=9541 GN=FGFR1OP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.160e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-GLEGRENLARDL-GIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Match: sp|O95684|FR1OP_HUMAN (FGFR1 oncogene partner OS=Homo sapiens OX=9606 GN=FGFR1OP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.532e-12
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-GLEGRENLARDL-GIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Match: sp|Q4V7C1|FR1OP_RAT (FGFR1 oncogene partner OS=Rattus norvegicus OX=10116 GN=Fgfr1op PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.056e-11
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            D ELRDL+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF  E    +  L  R+++ ++   +I        PLL   +R    K
Sbjct:   13 DTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQ-GLEGRENLARD-LGIIEAEGTVGGPLLLEVIRRCQQK 138
[Close]
BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Match: sp|Q2YDD1|FR1OP_BOVIN (FGFR1 oncogene partner OS=Bos taurus OX=9913 GN=FGFR1OP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.145e-11
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNKINDLSDKE 559
            D ELR L+ + L   G++N +KA+LRA V L L + +  ++K P+ ++   ++  +N  +G+L  SLV +FLQ  NL  TL+VF+ E    +  L  R+++ ++   +I        PLL   +R    K   L+  E
Sbjct:   13 DTELRYLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE--SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTFQ-GLEGRENLARD-LGIIEAEGTVGGPLLLEVIRRCQQKEKALTSGE 146
[Close]
BLAST of FGFR1 oncogene partner vs. TrEMBL
Match: A0A3S0ZHS0 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_017066 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.321e-13
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 2 
Query:  152 DAELRDLITERLSKLGLINELKAQLRAGVLLTL--SQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNKINDLS 550
            D ELRDL+ + L   G + +L+AQLRA V L L   ++  SK P  +  K+++  +   EGKL  SLV++FL+  NL+ TL+VF+ E+GV   N  ++ S +    N+ N       PLL S L N ++ I D S
Sbjct:    6 DTELRDLVAQTLESNGTLGKLRAQLRASVFLALEDQENGQSKAPFLN--KELKGFLATQEGKLTASLVQEFLEYFNLEFTLAVFKPESGV---NNEEKRSELLKELNIPNQGAPTNVPLLTSLLYNKSHGIQDQS 135
[Close]
BLAST of FGFR1 oncogene partner vs. TrEMBL
Match: A0A4Y2ADX1 (FGFR1 oncogene partner OS=Araneus ventricosus OX=182803 GN=FGFR1OP PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.776e-13
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2 
Query:  143 SHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKD--SKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRN 523
            +  + ELRDLI + L   G +N++KA+LRAGVLL   +++   SKIP+++  KK    +   +GKL  SLV++FL+  NL  T+SVF+ E       LN  D  +    N+   N D   P++ + LR+
Sbjct:    3 AEGETELRDLIIQNLEACGFLNKIKAELRAGVLLAFEEERSLRSKIPLFN--KKFDEFMEKKDGKLVVSLVREFLEYFNLNFTISVFDPEIATSSPCLNRTD--LCKELNL--KNSDFDGPVISALLRS 125
[Close]
BLAST of FGFR1 oncogene partner vs. TrEMBL
Match: A0A0P6F9S5 (FGFR1 oncogene partner (Fragment) OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.108e-12
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELE 406
            MS EE    D ELRDLI + L   G++ +L+AQLRA   L L Q +DSK+   +    +Q  V+   G +  SL++DFL   NL+ TL+VF+ E
Sbjct:    1 MSTEE----DPELRDLIAKSLENNGVLGKLRAQLRASTFLALDQQEDSKVTFPNSNSAVQEFVSTKHGAITMSLIRDFLTLFNLQFTLAVFDPE 90
[Close]
BLAST of FGFR1 oncogene partner vs. TrEMBL
Match: A0A164KTY9 (LisH domain-containing protein FOPNL OS=Daphnia magna OX=35525 GN=APZ42_033714 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.543e-12
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELE 406
            MS EE    D ELRDLI + L   G++ +L+AQLRA   L L Q +DSK+   +    +Q  V+   G +  SL++DFL   NL+ TL+VF+ E
Sbjct:    1 MSTEE----DPELRDLIAKSLENNGVLGKLRAQLRASTFLALDQQEDSKVTFPNSNSAVQEFVSTKHGAITMSLIRDFLTLFNLQFTLAVFDPE 90
[Close]
BLAST of FGFR1 oncogene partner vs. TrEMBL
Match: A0A0P6GNS1 (FGFR1 oncogene partner OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.653e-12
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELE 406
            MS EE    D ELRDLI + L   G++ +L+AQLRA   L L Q +DSK+   +    +Q  V+   G +  SL++DFL   NL+ TL+VF+ E
Sbjct:    1 MSTEE----DPELRDLIAKSLENNGVLGKLRAQLRASTFLALDQQEDSKVTFPNSNSAVQEFVSTKHGAITISLIRDFLTLFNLQFTLAVFDPE 90
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:103033038])

HSP 1 Score: 72.0182 bits (175), Expect = 1.727e-13
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 2 
Query:   83 PWIHLFIFNFD*YKMSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELN-LNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            P  H+ +      KMS  E    D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L  SL+ DFLQ  NL  TL+VF+ E  +  LN L+ R+S+ +  +  ++++E  KS PLL   ++   +K
Sbjct:   31 PRGHMTVG----LKMSATE---EDTELRDLLIQNLENNGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKCLNTKDGRLVASLITDFLQVFNLDFTLAVFQPE--INTLNGLDGRESLFR--ELGLSESEGNKSTPLLLEVIKRGRHK 172
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:103033038])

HSP 1 Score: 72.0182 bits (175), Expect = 2.009e-13
Identity = 54/142 (38.03%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:  122 KMSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELN-LNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            KMS  E    D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L  SL+ DFLQ  NL  TL+VF+ E  +  LN L+ R+S+ +  +  ++++E  KS PLL   ++   +K
Sbjct:   40 KMSATE---EDTELRDLLIQNLENNGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKCLNTKDGRLVASLITDFLQVFNLDFTLAVFQPE--INTLNGLDGRESLFR--ELGLSESEGNKSTPLLLEVIKRGRHK 172
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:103033038])

HSP 1 Score: 72.0182 bits (175), Expect = 2.024e-13
Identity = 54/142 (38.03%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:  122 KMSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELN-LNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            KMS  E    D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L  SL+ DFLQ  NL  TL+VF+ E  +  LN L+ R+S+ +  +  ++++E  KS PLL   ++   +K
Sbjct:   40 KMSATE---EDTELRDLLIQNLENNGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKCLNTKDGRLVASLITDFLQVFNLDFTLAVFQPE--INTLNGLDGRESLFR--ELGLSESEGNKSTPLLLEVIKRGRHK 172
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:103033038])

HSP 1 Score: 72.0182 bits (175), Expect = 2.115e-13
Identity = 54/142 (38.03%), Postives = 86/142 (60.56%), Query Frame = 2 
Query:  122 KMSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELN-LNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            KMS  E    D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L  SL+ DFLQ  NL  TL+VF+ E  +  LN L+ R+S+ +     ++++E  KS PLL   ++   +K
Sbjct:   40 KMSATE---EDTELRDLLIQNLENNGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKCLNTKDGRLVASLITDFLQVFNLDFTLAVFQPE--INTLNGLDGRESLFRELG--LSESEGNKSTPLLLEVIKRGRHK 172
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Match: fgfr1op (FGFR1 oncogene partner [Source:NCBI gene;Acc:103033038])

HSP 1 Score: 72.0182 bits (175), Expect = 2.179e-13
Identity = 54/142 (38.03%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:  122 KMSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTL-SQDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELN-LNDRDSIIQNHQNVINDNEDCKS-PLLYSFLRNNNNK 535
            KMS  E    D ELRDL+ + L   G++N++KA+LRA V L L  QDK ++K P+ ++   ++  +N  +G+L  SL+ DFLQ  NL  TL+VF+ E  +  LN L+ R+S+ +  +  ++++E  KS PLL   ++   +K
Sbjct:   40 KMSATE---EDTELRDLLIQNLENNGVLNKIKAELRAAVFLALEEQDKVENKTPLVNE--NLKKCLNTKDGRLVASLITDFLQVFNLDFTLAVFQPE--INTLNGLDGRESLFR--ELGLSESEGNKSTPLLLEVIKRGRHK 172
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Sea Lamprey
Match: fgfr1op (FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1])

HSP 1 Score: 72.7886 bits (177), Expect = 1.495e-14
Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDK--DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNK 535
            MS EE    D ELRDL+ + L   G++N++KA+LRA V L L + +   +K P+ ++  +++N +N+ +G L  SLV +FLQ  NL  TL+VF  E     + L+DR  + Q    ++  +    +PLL   L+ +  +
Sbjct:    8 MSAEE----DTELRDLLVQTLEGNGVLNKIKAELRAAVFLALEEQEAVQNKTPLVNE--QLKNFLNSKDGLLIASLVTEFLQFFNLDFTLAVFTPETNT-AIGLDDRGGLTQK-LGIVETDSTKSAPLLLEILKRSRAR 138
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Nematostella
Match: EDO38339 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD82])

HSP 1 Score: 66.2402 bits (160), Expect = 3.064e-12
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDS--KIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAG-----------VEELNLNDRDS 445
            MS +E    D ELRDL+ + L   G++ +++AQLRA V L L + + +  KIP+ +    ++  ++ +EG+L   LV++FL+   L  T++VF+ E+              ELNL D DS
Sbjct:    1 MSTDE----DTELRDLVAQSLESKGVLGKIRAQLRASVFLALEEQEGAENKIPLTN--GNLKKFISTSEGRLVAGLVREFLEFFELDFTIAVFDPESNFSDKYQGRNNLANELNLPDSDS 114
[Close]
BLAST of FGFR1 oncogene partner vs. Ensembl Medaka
Match: ENSORLT00000022728.2 (FGFR1 oncogene partner [Source:NCBI gene;Acc:101167012])

HSP 1 Score: 67.3958 bits (163), Expect = 4.083e-12
Identity = 41/128 (32.03%), Postives = 75/128 (58.59%), Query Frame = 2 
Query:  143 SHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLS-QDK-DSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLR 520
            + +D ELRDL+ + L   G++N++KA++RA V L +  QD+ ++K+P+ ++   ++  +N+ +G+LA + + DFLQ  +L  +L+VF  E  +   N  D   ++     + +   D  SPLL   LR
Sbjct:    4 AEDDTELRDLVIQNLENSGVLNKMKAEMRAAVFLAMEDQDRLENKVPLVNE--SLKKCLNSRDGRLAVAFIVDFLQVFSLDFSLAVFLPE--INSPNGVDSREVVCRELGLRDSEVDKSSPLLLELLR 127
[Close]
BLAST of FGFR1 oncogene partner vs. Planmine SMEST
Match: SMESG000006505.1 (SMESG000006505.1)

HSP 1 Score: 492.656 bits (1267), Expect = 4.276e-177
Identity = 277/282 (98.23%), Postives = 278/282 (98.58%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLR--NNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNLNSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSSLTKHNXXXXXXXXXXXXXXXXXXXXNGDITIDSERSLSLDYMEIA 964
            MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNN EGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSI+QNHQNVINDNEDCKSPLLYSFLR  NNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNLNSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSS TKHNDDKSDDESIKEEIDERSESRNGDITIDSERSLSLDYMEIA
Sbjct:    1 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNAEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSILQNHQNVINDNEDCKSPLLYSFLRNNNNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNLNSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSSSTKHNDDKSDDESIKEEIDERSESRNGDITIDSERSLSLDYMEIA 282
[Close]
BLAST of FGFR1 oncogene partner vs. Planmine SMEST
Match: SMESG000006505.1 (SMESG000006505.1)

HSP 1 Score: 481.485 bits (1238), Expect = 2.597e-172
Identity = 277/303 (91.42%), Postives = 278/303 (91.75%), Query Frame = 2 
Query:  125 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSIIQNHQNVINDNEDCKSPLLYSFLR--NNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNL---------------------NSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSSLTKHNXXXXXXXXXXXXXXXXXXXXNGDITIDSERSLSLDYMEIA 964
            MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNN EGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSI+QNHQNVINDNEDCKSPLLYSFLR  NNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNL                     NSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSS TKHNDDKSDDESIKEEIDERSESRNGDITIDSERSLSLDYMEIA
Sbjct:    1 MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKIPIYDQKKKIQNIVNNAEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEELNLNDRDSILQNHQNVINDNEDCKSPLLYSFLRNNNNNNKINDLSDKEIIRGSMTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNLDRTSSTTRIPKFMSNSQKTSINSEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSSSTKHNDDKSDDESIKEEIDERSESRNGDITIDSERSLSLDYMEIA 303
The following BLAST results are available for this feature:
BLAST of FGFR1 oncogene partner vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
FGFR1OP1.196e-1233.08FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGN... [more]
FGFR1OP1.464e-1233.08FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGN... [more]
FGFR1OP1.568e-1233.08FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGN... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FGFR1 oncogene partner vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FGFR1 oncogene partner vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
fgfr1op8.567e-1333.08FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-0... [more]
fgfr1op8.593e-1333.08FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-0... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
fgfr1op4.151e-1133.59FGFR1 oncogene partner [Source:NCBI gene;Acc:54951... [more]
fgfr1op4.322e-1133.59FGFR1 oncogene partner [Source:NCBI gene;Acc:54951... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Fgfr1op5.044e-1333.85Fgfr1 oncogene partner [Source:MGI Symbol;Acc:MGI:... [more]
Fgfr1op5.831e-1333.85Fgfr1 oncogene partner [Source:MGI Symbol;Acc:MGI:... [more]
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BLAST of FGFR1 oncogene partner vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q66JX5|FR1OP_MOUSE4.079e-1233.85FGFR1 oncogene partner OS=Mus musculus OX=10090 GN... [more]
sp|Q4R7V3|FR1OP_MACFA7.160e-1233.08FGFR1 oncogene partner OS=Macaca fascicularis OX=9... [more]
sp|O95684|FR1OP_HUMAN7.532e-1233.08FGFR1 oncogene partner OS=Homo sapiens OX=9606 GN=... [more]
sp|Q4V7C1|FR1OP_RAT1.056e-1133.08FGFR1 oncogene partner OS=Rattus norvegicus OX=101... [more]
sp|Q2YDD1|FR1OP_BOVIN6.145e-1131.88FGFR1 oncogene partner OS=Bos taurus OX=9913 GN=FG... [more]
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BLAST of FGFR1 oncogene partner vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3S0ZHS01.321e-1338.52Uncharacterized protein (Fragment) OS=Elysia chlor... [more]
A0A4Y2ADX12.776e-1337.21FGFR1 oncogene partner OS=Araneus ventricosus OX=1... [more]
A0A0P6F9S51.108e-1242.55FGFR1 oncogene partner (Fragment) OS=Daphnia magna... [more]
A0A164KTY91.543e-1242.55LisH domain-containing protein FOPNL OS=Daphnia ma... [more]
A0A0P6GNS11.653e-1242.55FGFR1 oncogene partner OS=Daphnia magna OX=35525 P... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
fgfr1op1.727e-1336.13FGFR1 oncogene partner [Source:NCBI gene;Acc:10303... [more]
fgfr1op2.009e-1338.03FGFR1 oncogene partner [Source:NCBI gene;Acc:10303... [more]
fgfr1op2.024e-1338.03FGFR1 oncogene partner [Source:NCBI gene;Acc:10303... [more]
fgfr1op2.115e-1338.03FGFR1 oncogene partner [Source:NCBI gene;Acc:10303... [more]
fgfr1op2.179e-1338.03FGFR1 oncogene partner [Source:NCBI gene;Acc:10303... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
fgfr1op1.495e-1434.53FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-0... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of FGFR1 oncogene partner vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO383393.064e-1234.17Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of FGFR1 oncogene partner vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSORLT00000022728.24.083e-1232.03FGFR1 oncogene partner [Source:NCBI gene;Acc:10116... [more]
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BLAST of FGFR1 oncogene partner vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000006505.14.276e-17798.23SMESG000006505.1[more]
SMESG000006505.12.597e-17291.42SMESG000006505.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015650 ID=SMED30015650|Name=FGFR1 oncogene partner|organism=Schmidtea mediterranea sexual|type=transcript|length=1049bp
TTAACATTTTCTAAAATTTAATATTTCTTTCTTTTTTTAATTTGGTTTTT
ATACATAATTTAAACTTTATTTTAATACATTGCCTTGGATACATTTGTTT
ATATTTAATTTTGATTAATATAAAATGTCTAATGAAGAACTTTCTCATAA
TGATGCTGAATTGAGAGATCTTATTACTGAAAGATTATCGAAATTGGGAT
TAATTAACGAATTAAAAGCACAACTGAGAGCTGGCGTTTTACTAACATTA
TCACAAGATAAAGATAGTAAAATTCCAATTTACGACCAGAAAAAGAAAAT
TCAGAATATTGTTAATAATACCGAAGGCAAACTTGCTTTTTCATTAGTCA
AAGATTTTTTACAGCAGTTAAACTTGAAGCATACATTATCAGTTTTTGAA
TTAGAAGCTGGTGTAGAAGAATTAAACTTGAATGATCGAGACTCCATAAT
ACAGAATCACCAAAACGTCATTAATGACAACGAGGACTGTAAATCACCGT
TGTTATACAGCTTTCTGAGAAATAATAATAATAAAATTAATGATCTTTCG
GATAAAGAAATAATCAGGGGATCAATGACAAATGGAACAACAAAGAATAA
AAGAATACTGCCAAGTGTAATGGATAATAAAGAAAAGGATCGAATTAGTT
ACAAATCGGATGATTCCAGCGACTTTAGTGAAACAATCGACATGCCGGAT
TTATCAGATAAGAAAAATTTAAATTCCGAAAAAATATTCAACGCATATCA
AACTCAACCTAAGCATAATAGTAAAGGATCTATGAGCAATGACATTTCAT
ATGAGGAAACGTTCAGTGATAAATCTTCCTTGACTAAACACAATGATGAT
AAATCAGATGATGAAAGTATCAAGGAAGAGATTGATGAACGAAGCGAATC
TCGGAATGGAGACATCACAATTGACTCAGAAAGAAGCCTCTCACTTGATT
ATATGGAAATTGCCAAGAAGAAATAATAAAACATAATCATTTCTTGTGTT
CCGTTAATTTATTATTATTTTATAATATAATTTCTTGATATCAAAAAAA
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protein sequence of SMED30015650-orf-1

>SMED30015650-orf-1 ID=SMED30015650-orf-1|Name=SMED30015650-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=284bp
MSNEELSHNDAELRDLITERLSKLGLINELKAQLRAGVLLTLSQDKDSKI
PIYDQKKKIQNIVNNTEGKLAFSLVKDFLQQLNLKHTLSVFELEAGVEEL
NLNDRDSIIQNHQNVINDNEDCKSPLLYSFLRNNNNKINDLSDKEIIRGS
MTNGTTKNKRILPSVMDNKEKDRISYKSDDSSDFSETIDMPDLSDKKNLN
SEKIFNAYQTQPKHNSKGSMSNDISYEETFSDKSSLTKHNDDKSDDESIK
EEIDERSESRNGDITIDSERSLSLDYMEIAKKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR018993FOP_dimerisation-dom_N
IPR006594LisH
Vocabulary: biological process
TermDefinition
GO:0034453microtubule anchoring
Vocabulary: cellular component
TermDefinition
GO:0005815microtubule organizing center
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding