acidic repeat-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015608 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of acidic repeat-containing protein vs. Ensembl Human
Match: GCNA (germ cell nuclear acidic peptidase [Source:HGNC Symbol;Acc:HGNC:15805]) HSP 1 Score: 78.5666 bits (192), Expect = 9.154e-16 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILF 486 R I + K+C+ + R+ +IHEMCHAA+++I I+D HG W+ + + P +P RCH+Y+ +K Y C C ++K D IC KCK L++ Sbjct: 569 RFAKIQIGLKVCDSADRIRDTLIHEMCHAASWLIDGIHDSHGDAWKYYARKSNRIHPELPRVTRCHNYKINYKVHYECTGCKTRIGCYTKSLDTSRFICAKCKGSLVMV 677
BLAST of acidic repeat-containing protein vs. Ensembl Human
Match: GCNA (germ cell nuclear acidic peptidase [Source:HGNC Symbol;Acc:HGNC:15805]) HSP 1 Score: 78.5666 bits (192), Expect = 9.154e-16 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILF 486 R I + K+C+ + R+ +IHEMCHAA+++I I+D HG W+ + + P +P RCH+Y+ +K Y C C ++K D IC KCK L++ Sbjct: 569 RFAKIQIGLKVCDSADRIRDTLIHEMCHAASWLIDGIHDSHGDAWKYYARKSNRIHPELPRVTRCHNYKINYKVHYECTGCKTRIGCYTKSLDTSRFICAKCKGSLVMV 677
BLAST of acidic repeat-containing protein vs. Ensembl Celegans
Match: gcna-1 (Germ Cell Nuclear Antigen [Source:UniProtKB/TrEMBL;Acc:Q23462]) HSP 1 Score: 72.7886 bits (177), Expect = 2.407e-14 Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 178 IDLSPKICNDSHRLLTVMIHEMCHAAAFMISKIN-DCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCE--TCPFVKAKHSKYKDN--KICPKCKSKLILF 486 +++SP +C + R+ +IHE+CHAA +++ +++ + HG W+ W F +P ERCHSY + K+ Y CE C + SK D K C +C + IL+ Sbjct: 344 VEMSPVVCTTAERVRDTLIHELCHAATWVVDRLHKEGHGPGWKRWGARCSSVFKSLPFIERCHSYEIEAKFFYVCEKDGCDVEIKRQSKSLDTSRKACGRCFGRFILY 451
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Match: CG14814 (gene:FBgn0023515 transcript:FBtr0339494) HSP 1 Score: 98.2117 bits (243), Expect = 9.173e-23 Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKI----CPKCKSKLILFSDR----GYGVHFEVDTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERFYLQK 645 R ++LS K+ + RL +IHE+CHAAA++ + HG +W+ W A FP +P + CH+Y +FKY Y+C +C KA H+ + K+ C C+ + LF ++ G V K GFA FVK+N++ + ++ Q M ILS + QK Sbjct: 844 RSSVVELSVKVLTTADRLRCTLIHELCHAAAWVFNG-EGGHGRVWKMWAQRANDKFPDLPQIKVCHNYSIEFKYTYKCLSCD--KASHAHSRSRKVEDLRCRICRGPITLFLNKKDKQGNTVSTPAGEAK---GFAKFVKDNFQRHKRDNMTAAQVMRILSVEYAKQK 1005
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Match: CG14814 (gene:FBgn0023515 transcript:FBtr0070370) HSP 1 Score: 98.2117 bits (243), Expect = 9.173e-23 Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKI----CPKCKSKLILFSDR----GYGVHFEVDTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERFYLQK 645 R ++LS K+ + RL +IHE+CHAAA++ + HG +W+ W A FP +P + CH+Y +FKY Y+C +C KA H+ + K+ C C+ + LF ++ G V K GFA FVK+N++ + ++ Q M ILS + QK Sbjct: 844 RSSVVELSVKVLTTADRLRCTLIHELCHAAAWVFNG-EGGHGRVWKMWAQRANDKFPDLPQIKVCHNYSIEFKYTYKCLSCD--KASHAHSRSRKVEDLRCRICRGPITLFLNKKDKQGNTVSTPAGEAK---GFAKFVKDNFQRHKRDNMTAAQVMRILSVEYAKQK 1005
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Match: CG14814 (gene:FBgn0023515 transcript:FBtr0070369) HSP 1 Score: 97.8265 bits (242), Expect = 1.190e-22 Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKI----CPKCKSKLILFSDR----GYGVHFEVDTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERFYLQK 645 R ++LS K+ + RL +IHE+CHAAA++ + HG +W+ W A FP +P + CH+Y +FKY Y+C +C KA H+ + K+ C C+ + LF ++ G V K GFA FVK+N++ + ++ Q M ILS + QK Sbjct: 866 RSSVVELSVKVLTTADRLRCTLIHELCHAAAWVFNG-EGGHGRVWKMWAQRANDKFPDLPQIKVCHNYSIEFKYTYKCLSCD--KASHAHSRSRKVEDLRCRICRGPITLFLNKKDKQGNTVSTPAGEAK---GFAKFVKDNFQRHKRDNMTAAQVMRILSVEYAKQK 1027
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Match: CG2694 (gene:FBgn0024991 transcript:FBtr0070482) HSP 1 Score: 56.9954 bits (136), Expect = 6.401e-9 Identity = 39/142 (27.46%), Postives = 67/142 (47.18%), Query Frame = 1 Query: 214 RLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKI-CPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRSK-DVNHKQAMSILSERF 633 L+ +++HEMCH AAF+ ++ HG R W AKMAFP VP C + + Y C C + K I C C+ ++ + +H +++ + F F+++ Y + ++ V H M++L+E F Sbjct: 530 ELIYLLLHEMCHVAAFLFNR-ELGHGDNCRRWTYQAKMAFPEVPALMECIA-----SFMYTCSMCSRSSYGLADLKSYNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGAEGGVTHSSKMALLNEMF 665
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Match: CG2694 (gene:FBgn0024991 transcript:FBtr0310649) HSP 1 Score: 56.6102 bits (135), Expect = 9.578e-9 Identity = 39/142 (27.46%), Postives = 67/142 (47.18%), Query Frame = 1 Query: 214 RLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKI-CPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRSK-DVNHKQAMSILSERF 633 L+ +++HEMCH AAF+ ++ HG R W AKMAFP VP C + + Y C C + K I C C+ ++ + +H +++ + F F+++ Y + ++ V H M++L+E F Sbjct: 679 ELIYLLLHEMCHVAAFLFNR-ELGHGDNCRRWTYQAKMAFPEVPALMECIA-----SFMYTCSMCSRSSYGLADLKSYNIRCYYCQFEVSVKPVSKANMHEGARSDRTMTPFKCFIRDKYLKLGAEGGVTHSSKMALLNEMF 814
BLAST of acidic repeat-containing protein vs. Ensembl Zebrafish
Match: gcna (germ cell nuclear acidic peptidase [Source:ZFIN;Acc:ZDB-GENE-050320-153]) HSP 1 Score: 111.309 bits (277), Expect = 3.194e-27 Identity = 60/162 (37.04%), Postives = 87/162 (53.70%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKP--LVGFAAFVKENYKSVRSK--DVNHKQAMSILSERF 633 R+ I+LS K+C+ + RL +IHEMCHAA ++I+ + D HG WR + A +A P +P+ RCHSY +K+QY+C C +HSK D +C C +L+L + +KP FA FVKENY S + + +H + M LS F Sbjct: 427 RYARIELSVKVCDSADRLRDTLIHEMCHAATWLINNVRDGHGPFWRLYARKAMLAHPELPMVSRCHSYDINYKFQYQCNRCKNTIGRHSKSLDTTKFVCALCTGQLVLLT-----------PSKPRAPTPFATFVKENYGSTKQELTGQSHAEIMRKLSADF 577
BLAST of acidic repeat-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000038004.1 (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:100379792]) HSP 1 Score: 111.309 bits (277), Expect = 4.178e-27 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSD-RGYGVHFEVDTNKPLVGFAAFVKENYKSVRS--KDVNHKQAMSILSERF 633 R+ I+LS K+C+ + RL +IHE+CHAA ++I+ + D HG WR + A + P +P+ RCH+Y +KY Y C C +HSK D + +C CK KL+L S R G L FA +VKENY S + ++H + M LS F Sbjct: 436 RYARIELSEKVCDSADRLRDTLIHEICHAATWLINGVRDGHGQFWRFYAKKATVVHPELPMVTRCHTYEINYKYTYECSRCKNTIGRHSKSLDTEKFVCALCKGKLVLLSSTRKDGSP----AGGQLTPFAKYVKENYGSTKKVMTGMSHAEVMRKLSADF 592
BLAST of acidic repeat-containing protein vs. UniProt/SwissProt
Match: sp|Q96QF7|ACRC_HUMAN (Acidic repeat-containing protein OS=Homo sapiens OX=9606 GN=GCNA PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.396e-15 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILF 486 R I + K+C+ + R+ +IHEMCHAA+++I I+D HG W+ + + P +P RCH+Y+ +K Y C C ++K D IC KCK L++ Sbjct: 569 RFAKIQIGLKVCDSADRIRDTLIHEMCHAASWLIDGIHDSHGDAWKYYARKSNRIHPELPRVTRCHNYKINYKVHYECTGCKTRIGCYTKSLDTSRFICAKCKGSLVMV 677
BLAST of acidic repeat-containing protein vs. UniProt/SwissProt
Match: sp|O42953|YGM4_SCHPO (HMG box-containing protein C19G7.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC19G7.04 PE=4 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 7.034e-10 Identity = 46/166 (27.71%), Postives = 83/166 (50.00%), Query Frame = 1 Query: 169 HVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMI-SKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRC--ETCPFVKAKHSKYKD--NKICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRS--KDVNHKQAMSILSERFYLQK 645 + +I+LS K+ RL + HE+CH A ++I +++ + HG+ +++W P + +T + H+Y FKY++ C E C + +HSK + ++C CKS++ + K F F+KEN K +R + HK+ M LS+ ++ K Sbjct: 190 YAYIELSDKVIVTKERLYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKRIMNNMPYIEITSK-HNYDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKI----------KQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHRTK 344
BLAST of acidic repeat-containing protein vs. TrEMBL
Match: F7AS59 (SprT-like domain-containing protein OS=Ciona intestinalis OX=7719 PE=4 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 6.119e-33 Identity = 69/172 (40.12%), Postives = 99/172 (57.56%), Query Frame = 1 Query: 142 LTQTEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDN--KICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKS----VRSKDV--NHKQAMSILSERF 633 + T T H I LS K+ + S+RL +IHEMCHAA ++I+ N+ HG W+SW AA+ P +P +RCH+Y ++KY Y C C +HSK D K+C +C+ L+L G + ++PL FA FVKENYKS ++S DV +HK M+ LS++F Sbjct: 25 VNGTASTTHHAAISLSEKVIDSSYRLRDTLIHEMCHAAVWLINNANESHGPYWKSWAAAARRIHPELPSIDRCHNYDIEYKYIYECSRCKTTIGRHSKSLDTTKKVCGRCRGPLVLTQPNGTPLK-----SQPLNPFAKFVKENYKSTKVRLQSIDVASSHKDVMTSLSQQF 191
BLAST of acidic repeat-containing protein vs. TrEMBL
Match: A0A553NPW6 (SprT-like domain-containing protein OS=Tigriopus californicus OX=6832 GN=TCAL_03735 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.228e-31 Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKY--KDNKICPKCKSKLILFSDRGYGVHFE-----VDTNKPLVG--FAAFVKENYKSVRSKDVNHKQAMSILSERFYLQKL 648 R I+LS K+ + S RL +IHEMCHAAA++IS D HG IWR W + FP +P+ RCH+Y + K+ YRC C + +HSK D K+C C+ + L +R G + E V+ P FA FVKENYK VR V+H+ AM +LS +F L K+ Sbjct: 636 RFSSIELSSKVLDSSDRLRDTLIHEMCHAAAWIISGYRDGHGPIWRDWANRSMREFPELPIINRCHNYAIRTKFTYRCVKCGYQLGRHSKSLDTDRKVCGLCRGRFELLVNRKAGANTETPGRRVEPTTPRTPNKFALFVKENYKHVRLPGVDHRDAMMMLSSQFALSKI 805
BLAST of acidic repeat-containing protein vs. TrEMBL
Match: A0A5K3FNH5 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.333e-30 Identity = 68/184 (36.96%), Postives = 99/184 (53.80%), Query Frame = 1 Query: 151 TEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKY--KDNKICPKCKSK--LILFSDRGYGV-----------HFEVDTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERFYLQKLEIQ 657 + T RHV I+LS K+C + R+ ++HE CHAA +++ +ND HG +WR + A AFPL+P H+Y ++ YRC C +HSK + K+C +C S+ LI+ + RG GV H E T +P FA FVKE+YK VR + NHK+ M+ L F K+ + Sbjct: 11 SSTTTRHVRIELSGKVCTSAERVRDTLLHEACHAAVWVVHGVNDGHGRLWREFVRKANAAFPLLPPVTVRHTYAIDTRFTYRCTGCFATINRHSKSLNLEKKVCGRCHSRFELIVNTKRG-GVHPRHVVSSKVDHGEDSTTRPRPPFADFVKEHYKHVRQQTPNHKETMAQLGSMFRSMKIGVN 193
BLAST of acidic repeat-containing protein vs. TrEMBL
Match: A0A1W2WDZ5 (uncharacterized protein LOC100181834 OS=Ciona intestinalis OX=7719 GN=LOC100181834 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.835e-30 Identity = 69/169 (40.83%), Postives = 97/169 (57.40%), Query Frame = 1 Query: 151 TEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDN--KICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVR----SKDV--NHKQAMSILSERF 633 T T H I LS K+ + S+RL +IHEMCHAA ++I+ N+ HG W+SW AA+ P +P +RCH+Y ++KY Y C C +HSK D K+C +C+ L+L G + ++PL FA FVKENYKS + S DV +HK M+ LS++F Sbjct: 528 TASTTHHAAISLSEKVIDSSYRLRDTLIHEMCHAAVWLINNANESHGPYWKSWAAAARRIHPELPSIDRCHNYDIEYKYIYECSRCKTTIGRHSKSLDTTKKVCGRCRGPLVLTQPNGTPLK-----SQPLNPFAKFVKENYKSTKVRLQSIDVASSHKDVMTSLSQQF 691
BLAST of acidic repeat-containing protein vs. TrEMBL
Match: A0A1S3H5D5 (uncharacterized protein LOC106152248 OS=Lingula unguis OX=7574 GN=LOC106152248 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 4.986e-29 Identity = 67/172 (38.95%), Postives = 92/172 (53.49%), Query Frame = 1 Query: 145 TQTEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKD--NKICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVR--SKDVNHKQAMSILSERFYLQKL 648 T E T R I+LS K+C+ + R+ +IHEMCHAA ++++ ND HG W+ W A + P +P+ RCH+Y + KY YRC C + +HSK D K+C C+ L + G T K L FA FVKENY V+ K + HK M LSE+F K+ Sbjct: 945 TAEERTAR---IELSDKVCDSAERVRNTLIHEMCHAAVWLLNGKNDGHGPYWKYWAKKANVVHPDLPVISRCHTYAIQTKYTYRCTKCSYQFGRHSKSLDITKKVCGHCRGTFELLINSKDGSKSTPSTTKALTPFAKFVKENYGIVKGGQKGLQHKDVMRQLSEQFASSKI 1113
BLAST of acidic repeat-containing protein vs. Ensembl Cavefish
Match: gcna (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:103028451]) HSP 1 Score: 116.701 bits (291), Expect = 2.938e-29 Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRSK--DVNHKQAMSILSERFYLQKL 648 R+ I+LS K+C+ + RL ++HEMCHAA ++I+ + D HG W+ + A +A P +P+ RCHSY +KYQY+C C +HSK D + +C C KL+L + ++ P FA FVKENY VR + +H + M LS F +L Sbjct: 430 RYARIELSVKVCDSADRLRDTLVHEMCHAATWLINNVRDGHGPFWKIYARKATLAHPELPMVTRCHSYDINYKYQYQCSRCKNTIGRHSKSLDTERFVCALCTGKLVLLT--------PANSRGP-TPFATFVKENYGPVRQELAGQSHAEVMRKLSADFSKTRL 585
BLAST of acidic repeat-containing protein vs. Ensembl Cavefish
Match: gcna (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:103028451]) HSP 1 Score: 116.701 bits (291), Expect = 3.072e-29 Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRSK--DVNHKQAMSILSERFYLQKL 648 R+ I+LS K+C+ + RL ++HEMCHAA ++I+ + D HG W+ + A +A P +P+ RCHSY +KYQY+C C +HSK D + +C C KL+L + ++ P FA FVKENY VR + +H + M LS F +L Sbjct: 448 RYARIELSVKVCDSADRLRDTLVHEMCHAATWLINNVRDGHGPFWKIYARKATLAHPELPMVTRCHSYDINYKYQYQCSRCKNTIGRHSKSLDTERFVCALCTGKLVLLT--------PANSRGP-TPFATFVKENYGPVRQELAGQSHAEVMRKLSADFSKTRL 603
BLAST of acidic repeat-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003196.1 (pep scaffold:Pmarinus_7.0:GL481285:6911:9692:1 gene:ENSPMAG00000002918.1 transcript:ENSPMAT00000003196.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 114.39 bits (285), Expect = 5.108e-31 Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 1 Query: 178 IDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRS--KDVNHKQAMSILSERFYLQKLE 651 I+LS K+C++ RL ++HEMCHAA ++I+ D HG +W+ + A + P +P RCH+Y FKY+Y C C +HSK D + +C C+ + +L G T++ L F FVKE Y + RS D +H M IL E+F +L+ Sbjct: 85 IELSVKVCDNPERLRDTLVHEMCHAATWLINGQRDGHGRLWQLYARTATLVHPELPTVSRCHTYNITFKYRYECTRCKNSIGRHSKSLDTERFVCALCQGRFVLLPPEGR--DGTPVTSRALTPFTRFVKEQYGTTRSARPDSSHADIMRILGEQFSKTRLQ 244
BLAST of acidic repeat-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003198.1 (pep scaffold:Pmarinus_7.0:GL481285:6974:9692:1 gene:ENSPMAG00000002918.1 transcript:ENSPMAT00000003198.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 103.605 bits (257), Expect = 3.408e-27 Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 1 Query: 196 ICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGY-GVHFEVDTNKPLVGFAAFVKENYKSVRSK--DVNHKQAMSILSERFYLQKLE 651 + + + RL ++HEMCHAA ++I+ D HG +W+ + A + P +P RCH+Y FKY+Y C C +HSK D + +C C+ + +L G G T++ L F FVKE Y + RS D +H M IL E+F +L+ Sbjct: 64 LMHGTERLRDTLVHEMCHAATWLINGQRDGHGRLWQLYARTATLVHPELPTVSRCHTYNITFKYRYECTRCKNSIGRHSKSLDTERFVCALCQGRFVLLPPEGRDGTPV---TSRALTPFTRFVKEQYGTTRSARPDSSHADIMRILGEQFSKTRLQ 217
BLAST of acidic repeat-containing protein vs. Ensembl Nematostella
Match: EDO49719 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFH1]) HSP 1 Score: 74.3294 bits (181), Expect = 2.498e-16 Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 178 IDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRC--ETCPFVKAKHSK 435 I+L+ K+ + + RL +IHEMCHAAA++IS + HG +W+ W + A +P RCH+Y+ K+ Y C E C ++HSK Sbjct: 74 IELADKVIDSADRLRDTLIHEMCHAAAWLISGVKAGHGPVWKKWQVKANYILQDLPPISRCHTYKINAKFVYACTNEFCSNTISRHSK 161
BLAST of acidic repeat-containing protein vs. Ensembl Medaka
Match: gcna (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:101164819]) HSP 1 Score: 108.227 bits (269), Expect = 2.105e-26 Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPL--VGFAAFVKENYKSVRSK--DVNHKQAMSILSERF 633 R+ I+LS K+C+ + RL +IHE+CHAA ++I+ + D HG+ W+ + A + P +P+ RCHSY +K++Y+C C +HSK D + +C C +L+L + +KP FA FVKENY SVR + +H + M LS F Sbjct: 346 RYARIELSEKVCDSADRLRDTLIHELCHAATWLINGVRDGHGAFWKLYARKATVLHPELPMVTRCHSYDITYKFRYQCTRCQNTIGRHSKSLDTQKFVCALCTGRLVLMT-----------PSKPRAPTPFANFVKENYGSVRQELAGQSHAEVMRKLSTDF 496
BLAST of acidic repeat-containing protein vs. Ensembl Medaka
Match: gcna (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:101164819]) HSP 1 Score: 108.612 bits (270), Expect = 2.205e-26 Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPL--VGFAAFVKENYKSVRSK--DVNHKQAMSILSERF 633 R+ I+LS K+C+ + RL +IHE+CHAA ++I+ + D HG+ W+ + A + P +P+ RCHSY +K++Y+C C +HSK D + +C C +L+L + +KP FA FVKENY SVR + +H + M LS F Sbjct: 386 RYARIELSEKVCDSADRLRDTLIHELCHAATWLINGVRDGHGAFWKLYARKATVLHPELPMVTRCHSYDITYKFRYQCTRCQNTIGRHSKSLDTQKFVCALCTGRLVLMT-----------PSKPRAPTPFANFVKENYGSVRQELAGQSHAEVMRKLSTDF 536
BLAST of acidic repeat-containing protein vs. Ensembl Medaka
Match: gcna (germ cell nuclear acidic peptidase [Source:NCBI gene;Acc:101164819]) HSP 1 Score: 108.612 bits (270), Expect = 2.205e-26 Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 166 RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNK--ICPKCKSKLILFSDRGYGVHFEVDTNKPL--VGFAAFVKENYKSVRSK--DVNHKQAMSILSERF 633 R+ I+LS K+C+ + RL +IHE+CHAA ++I+ + D HG+ W+ + A + P +P+ RCHSY +K++Y+C C +HSK D + +C C +L+L + +KP FA FVKENY SVR + +H + M LS F Sbjct: 386 RYARIELSEKVCDSADRLRDTLIHELCHAATWLINGVRDGHGAFWKLYARKATVLHPELPMVTRCHSYDITYKFRYQCTRCQNTIGRHSKSLDTQKFVCALCTGRLVLMT-----------PSKPRAPTPFANFVKENYGSVRQELAGQSHAEVMRKLSTDF 536
BLAST of acidic repeat-containing protein vs. Planmine SMEST
Match: SMESG000016996.1 (SMESG000016996.1) HSP 1 Score: 390.578 bits (1002), Expect = 2.716e-135 Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 1 Query: 148 QTEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERFYLQKLEIQVNKAKAFMSEQSQA 699 +TEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPL+ERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKS RSKDVNHKQAMSILSERFYLQKLEIQVNKAKAFMSEQSQA Sbjct: 286 KTEETPRHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLSERCHSYRAKFKYQYRCETCPFVKAKHSKYKDNKICPKCKSKLILFSDRGYGVHFEVDTNKPLVGFAAFVKENYKSARSKDVNHKQAMSILSERFYLQKLEIQVNKAKAFMSEQSQA 469
BLAST of acidic repeat-containing protein vs. Planmine SMEST
Match: SMESG000004184.1 (SMESG000004184.1) HSP 1 Score: 126.716 bits (317), Expect = 6.387e-33 Identity = 67/168 (39.88%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 145 TQTEETP--RHVFIDLSPKICNDSHRLLTVMIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKFKYQYRCETCPFVKAKHSKYKD--NKICPKCKSKLILFSDRGYGVHFEV-DTNKPLVGFAAFVKENYKSVRSKDVNHKQAMSILSERF 633 T+T E P + I LS K+ D+ RLL ++HEMCH A ++I+K N HG +W+ W A ++FP V ++ERCH+Y K++Y C C +HSK D K+C CK K LF G V D K + GF+ FVKENY R +H + M LSE + Sbjct: 384 TKTREEPVIHSIKIQLSKKVLTDAERLLGTLVHEMCHGAVWVINKTNGNHGPVWKKWTAKAHLSFPAVVMSERCHNYDIHTKFEYTCLNCNKSVKRHSKSIDINRKVCRICKGKFTLFRLDQKGNRIAVGDATKKMNGFSMFVKENYNKYRKSGTSHAEVMKKLSELY 551 The following BLAST results are available for this feature:
BLAST of acidic repeat-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of acidic repeat-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of acidic repeat-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of acidic repeat-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of acidic repeat-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of acidic repeat-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of acidic repeat-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of acidic repeat-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of acidic repeat-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of acidic repeat-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of acidic repeat-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of acidic repeat-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of acidic repeat-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of acidic repeat-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015608 ID=SMED30015608|Name=acidic repeat-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=819bpback to top protein sequence of SMED30015608-orf-1 >SMED30015608-orf-1 ID=SMED30015608-orf-1|Name=SMED30015608-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=158bp MIHEMCHAAAFMISKINDCHGSIWRSWCLAAKMAFPLVPLTERCHSYRAKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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