TAR DNA-binding protein 43

Overview


Name	TAR DNA-binding protein 43
Smed ID	SMED30015586
Length (bp)	2430

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of TAR DNA-binding protein 43 (SMED30015586) t-SNE clustered cells

Violin plots show distribution of expression levels for TAR DNA-binding protein 43 (SMED30015586) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of TAR DNA-binding protein 43 (SMED30015586) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for TAR DNA-binding protein 43 (SMED30015586) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30015586

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
pharynx	SMED30015586	h1SMcG0017670	dd_Smed_v4_12522_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30015586	h1SMcG0017670	dd_Smed_v4_12522_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 62.7734 bits (151), Expect = 4.694e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 59.6918 bits (143), Expect = 4.694e-21
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 63.1586 bits (152), Expect = 4.997e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 59.3066 bits (142), Expect = 4.997e-21
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 62.7734 bits (151), Expect = 5.656e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 59.3066 bits (142), Expect = 5.656e-21
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 62.7734 bits (151), Expect = 5.656e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 59.3066 bits (142), Expect = 5.656e-21
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 62.7734 bits (151), Expect = 5.988e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 59.3066 bits (142), Expect = 5.988e-21
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089626)

HSP 1 Score: 67.3958 bits (163), Expect = 6.941e-23
Identity = 38/135 (28.15%), Postives = 72/135 (53.33%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLP-LGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQ--LKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            F +V+  E    +E+P  EDG+L +S L+  F    G++YR   T  +RG    + +L  P +   W +  + CV+ +  K+  + N   + + +++ +  L+  D+I LGLP   T+ES   YF  +G++ +++
Sbjct:    3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQ 137

HSP 2 Score: 60.4622 bits (145), Expect = 6.941e-23
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTKQE 807
            +SKG+GF+R+ ++D Q   +   H+I      +++P +K        K+FV   T  +  + + EYF+ FG++ ++F+P      +F+TF   +  +S+      GE H + G  V V     K E
Sbjct:  146 QSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLC-----GEDHIIKGVSVHVSNAAPKAE 266

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089625)

HSP 1 Score: 65.855 bits (159), Expect = 1.489e-22
Identity = 38/135 (28.15%), Postives = 72/135 (53.33%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLP-LGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQ--LKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            F +V+  E    +E+P  EDG+L +S L+  F    G++YR   T  +RG    + +L  P +   W +  + CV+ +  K+  + N   + + +++ +  L+  D+I LGLP   T+ES   YF  +G++ +++
Sbjct:    3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQ 137

HSP 2 Score: 60.8474 bits (146), Expect = 1.489e-22
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTKQE 807
            +SKG+GF+R+ ++D Q   +   H+I      +++P +K        K+FV   T  +  + + EYF+ FG++ ++F+P      +F+TF   +  +S+      GE H + G  V V     K E
Sbjct:  146 QSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLC-----GEDHIIKGVSVHVSNAAPKAE 266

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089624)

HSP 1 Score: 65.855 bits (159), Expect = 1.489e-22
Identity = 38/135 (28.15%), Postives = 72/135 (53.33%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLP-LGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQ--LKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            F +V+  E    +E+P  EDG+L +S L+  F    G++YR   T  +RG    + +L  P +   W +  + CV+ +  K+  + N   + + +++ +  L+  D+I LGLP   T+ES   YF  +G++ +++
Sbjct:    3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQ 137

HSP 2 Score: 60.8474 bits (146), Expect = 1.489e-22
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTKQE 807
            +SKG+GF+R+ ++D Q   +   H+I      +++P +K        K+FV   T  +  + + EYF+ FG++ ++F+P      +F+TF   +  +S+      GE H + G  V V     K E
Sbjct:  146 QSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLC-----GEDHIIKGVSVHVSNAAPKAE 266

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0089627)

HSP 1 Score: 65.855 bits (159), Expect = 1.489e-22
Identity = 38/135 (28.15%), Postives = 72/135 (53.33%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLP-LGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQ--LKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            F +V+  E    +E+P  EDG+L +S L+  F    G++YR   T  +RG    + +L  P +   W +  + CV+ +  K+  + N   + + +++ +  L+  D+I LGLP   T+ES   YF  +G++ +++
Sbjct:    3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQ 137

HSP 2 Score: 60.8474 bits (146), Expect = 1.489e-22
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTKQE 807
            +SKG+GF+R+ ++D Q   +   H+I      +++P +K        K+FV   T  +  + + EYF+ FG++ ++F+P      +F+TF   +  +S+      GE H + G  V V     K E
Sbjct:  146 QSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLC-----GEDHIIKGVSVHVSNAAPKAE 266

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Match: TBPH (gene:FBgn0025790 transcript:FBtr0301643)

HSP 1 Score: 65.855 bits (159), Expect = 1.489e-22
Identity = 38/135 (28.15%), Postives = 72/135 (53.33%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLP-LGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQ--LKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            F +V+  E    +E+P  EDG+L +S L+  F    G++YR   T  +RG    + +L  P +   W +  + CV+ +  K+  + N   + + +++ +  L+  D+I LGLP   T+ES   YF  +G++ +++
Sbjct:    3 FVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQ 137

HSP 2 Score: 60.8474 bits (146), Expect = 1.489e-22
Identity = 35/126 (27.78%), Postives = 63/126 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTKQE 807
            +SKG+GF+R+ ++D Q   +   H+I      +++P +K        K+FV   T  +  + + EYF+ FG++ ++F+P      +F+TF   +  +S+      GE H + G  V V     K E
Sbjct:  146 QSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLC-----GEDHIIKGVSVHVSNAAPKAE 266

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 63.5438 bits (153), Expect = 1.271e-20
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   T++    YF  FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-EADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTTEQDLKDYFGTFGEV 131

HSP 2 Score: 57.3806 bits (137), Expect = 1.271e-20
Identity = 27/91 (29.67%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF 235

[Close]

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   T++    YF  FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-EADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTTEQDLKDYFGTFGEV 131

HSP 2 Score: 57.3806 bits (137), Expect = 1.271e-20
Identity = 27/91 (29.67%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF 235

[Close]

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   T++    YF  FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-EADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTTEQDLKDYFGTFGEV 131

HSP 2 Score: 57.3806 bits (137), Expect = 1.271e-20
Identity = 27/91 (29.67%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF 235

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 63.5438 bits (153), Expect = 6.458e-20
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   T++    YF  FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-EADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTTEQDLKDYFGTFGEV 131

HSP 2 Score: 54.6842 bits (130), Expect = 6.458e-20
Identity = 27/96 (28.12%), Postives = 51/96 (53.12%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-------DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K        D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF 240

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Match: tardbpl (TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1])

HSP 1 Score: 63.5438 bits (153), Expect = 6.458e-20
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   T++    YF  FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-EADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTTEQDLKDYFGTFGEV 131

HSP 2 Score: 54.6842 bits (130), Expect = 6.458e-20
Identity = 27/96 (28.12%), Postives = 51/96 (53.12%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-------DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K        D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF 240

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166])

HSP 1 Score: 60.8474 bits (146), Expect = 9.925e-21
Identity = 37/130 (28.46%), Postives = 64/130 (49.23%), Query Frame = 2

Query:   20 LMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + + +VA  EN   +EIP+ +DG++ +S +   F    G+RYR      +RG  + +  L  P    W + V+   Y +  K+  +     +    ++   KT D+I LGLP   T++    YFS FG++
Sbjct:   12 MEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPEN-GWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 140

HSP 2 Score: 60.8474 bits (146), Expect = 9.925e-21
Identity = 28/90 (31.11%), Postives = 53/90 (58.89%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K  D     RK+FV   T  ++ E + ++F+ +G++V++F+P      AF+TF
Sbjct:  154 SKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTF 243

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: jarid2 (jumonji and AT-rich interaction domain containing 2 [Source:Xenbase;Acc:XB-GENE-982166])

HSP 1 Score: 60.4622 bits (145), Expect = 1.998e-14
Identity = 37/130 (28.46%), Postives = 64/130 (49.23%), Query Frame = 2

Query:   20 LMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + + +VA  EN   +EIP+ +DG++ +S +   F    G+RYR      +RG  + +  L  P    W + V+   Y +  K+  +     +    ++   KT D+I LGLP   T++    YFS FG++
Sbjct:    3 MEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPEN-GWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131

HSP 2 Score: 39.6614 bits (91), Expect = 1.998e-14
Identity = 16/58 (27.59%), Postives = 32/58 (55.17%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVT 615
            SKG+GF+R+ +++ Q + +   H+I       +LP +K+  S C   L +  ++  V+
Sbjct:  145 SKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKVAQSLCGEDLIIKGVSVHVS 202

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: psd3 (pleckstrin and Sec7 domain containing 3 [Source:Xenbase;Acc:XB-GENE-6467528])

HSP 1 Score: 51.2174 bits (121), Expect = 3.808e-6
Identity = 35/116 (30.17%), Postives = 56/116 (48.28%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTE-HVIGNTTVCLRLPTAKMDSSTCK-----RKLFVTNITPSVTQEHILEYFNVFGKI--VEIFMPPASNPH---AFLTFEAEESILRIFRFGES 753
            +S+G+GF+ Y + D+    +    H +    V  +   ++ DSS        +K+FV  I     + H+ EYF  +GKI  +EI     S      AF+TFE  +S+ +I R G S
Sbjct:   53 RSRGFGFVTYSSTDEVDAAMSARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVRRGGS 168

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Match: hnrnpa2b1 (heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:549680])

HSP 1 Score: 50.0618 bits (118), Expect = 9.472e-6
Identity = 38/135 (28.15%), Postives = 61/135 (45.19%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFD--DQSECIRTEHVIGNTT----VCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKI--VEIFMPPASNPH---AFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEM 810
            +S+G+GF+ + + D  D S   R   + G          R  +AK  +    +KLFV  I     + H+ EYF  +GKI  +EI     S       F+TF+  + + +I    + H + G    V +  +KQEM
Sbjct:   48 RSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIITDKQSGKKRGFGFVTFDDHDPVDKIV-LQKYHTINGHNAEVRKALSKQEM 181

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 62.3882 bits (150), Expect = 7.935e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 58.9214 bits (141), Expect = 7.935e-21
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 58.9214 bits (141), Expect = 7.935e-21
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 62.3882 bits (150), Expect = 8.342e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 58.9214 bits (141), Expect = 8.342e-21
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 62.3882 bits (150), Expect = 8.409e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 58.9214 bits (141), Expect = 8.409e-21
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Match: Tardbp (TAR DNA binding protein [Source:MGI Symbol;Acc:MGI:2387629])

HSP 1 Score: 62.3882 bits (150), Expect = 8.409e-21
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 58.9214 bits (141), Expect = 8.409e-21
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q13148|TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens OX=9606 GN=TARDBP PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.660e-20
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

HSP 2 Score: 60.077 bits (144), Expect = 3.660e-20
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q28F51|TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis OX=8364 GN=tardbp PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.789e-20
Identity = 37/130 (28.46%), Postives = 64/130 (49.23%), Query Frame = 2

Query:   20 LMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + + +VA  EN   +EIP+ +DG++ +S +   F    G+RYR      +RG  + +  L  P    W + V+   Y +  K+  +     +    ++   KT D+I LGLP   T++    YFS FG++
Sbjct:    3 MEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAPEN-GWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131

HSP 2 Score: 60.8474 bits (146), Expect = 3.789e-20
Identity = 28/90 (31.11%), Postives = 53/90 (58.89%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K  D     RK+FV   T  ++ E + ++F+ +G++V++F+P      AF+TF
Sbjct:  145 SKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q921F2|TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus OX=10090 GN=Tardbp PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.242e-20
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 130

HSP 2 Score: 59.3066 bits (142), Expect = 6.242e-20
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T E + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTF 234

[Close]

BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5R5W2|TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii OX=9601 GN=TARDBP PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.375e-19
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + +   H+I       +LP +K   D     RK+FV   T  +T++ + E+F+ +G ++++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTF 234

HSP 2 Score: 59.6918 bits (143), Expect = 1.375e-19
Identity = 37/129 (28.68%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   E+   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP-DAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

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BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Match: sp|Q5ZLN5|TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus OX=9031 GN=TARDBP PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.277e-19
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++V++F+P      AF+TF
Sbjct:  144 SKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPFRAFAFVTF 234

HSP 2 Score: 58.5362 bits (140), Expect = 6.277e-19
Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   EN   +EIP+ +DG++ +S +   F    G+RYR   +  + G  + +  L  P    W + V+   Y +  K K++  +++    +    Q KT D+I LGLP   T++    YFS FG++
Sbjct:    4 YIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMWGVRLVEGILHAPE-AGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ-KTSDLIVLGLPWKTTEQDLKEYFSTFGEV 130

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BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: R7TFC3 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_175992 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.149e-27
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKK-----LENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
             + +VA  EN   +E+P+ EDG+L +S L   F    G++YR   +G LRG  + D +L  P G+ W +++F+CV+ +  K+     LENP +       EK   K  D+I LGLP   T++    YFS+FG+L
Sbjct:    3 QYLQVAEDENEEPIELPSEEDGTLLLSTLAAQFPGSCGLKYRNPDSGVLRGIRLADGRLHPPDGM-WGNHIFYCVFPKENKRKGEEGLENPMAKTKR--VEKH--KCSDLIVLGLPWKSTEDDLQAYFSQFGEL 131

HSP 2 Score: 71.633 bits (174), Expect = 1.149e-27
Identity = 37/122 (30.33%), Postives = 65/122 (53.28%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSS-TCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            +SKG+GF+R+ +++ Q +C+   H+I      +R+P ++  +     RK+F+   T  +T + +  YFN FG++V++F+P      AF+TF   E    +   GE H + G  V V     K
Sbjct:  144 QSKGFGFVRFADYEAQLKCLAVRHMIDGRWCDVRIPNSREGTQHIVNRKVFIGRCTEDMTADDLRSYFNKFGEVVDVFIPKPFRAFAFVTFADPEVAHAL--CGEDHIIKGASVHVSNAAPK 263

[Close]

BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A4Y2HRL7 (TAR DNA-binding protein 43 OS=Araneus ventricosus OX=182803 GN=tardbp PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.375e-26
Identity = 41/140 (29.29%), Postives = 75/140 (53.57%), Query Frame = 2

Query:   14 ICLMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKT----FDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            + L + +VA  E    +E+P  EDG+L +S L   F    G++YR   TG +RG  + D +L  P G  W ++++ CV+ +  +        + NS ++  +++T     D+I LGLP   T++   +YF  FG++ +++
Sbjct:    1 MSLSYVQVAEDEGEEPIEVPCEEDGTLLLSTLAAQFPGTCGLKYRNPGTGTMRGIRLTDGKLNPPYGTGWGNSLYICVFPKVTENKRKSCDQLENSSAKTKRMETKHKCSDLIVLGLPWKTTEQELRQYFESFGEVLMAQ 140

HSP 2 Score: 67.781 bits (164), Expect = 3.375e-26
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAK-MDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            +SKG+GF+R+ N++ Q+  +   H+I      +R+P +K    +   RK+F+   T  +T + + +YF+ FG++ ++F+P      AF+TF   E  +S+      GE H V G  ++V     K
Sbjct:  149 QSKGFGFIRFSNYESQARALSKRHLIDGRWCDVRIPNSKDGQVAELNRKVFIGRCTEDITADDLEDYFSKFGEVTDVFIPKPFRAFAFVTFLHPEVAQSLC-----GEDHIVKGASLLVSSAVPK 268

[Close]

BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A087TT60 (TAR DNA-binding protein 43 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_17982 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.617e-26
Identity = 41/140 (29.29%), Postives = 75/140 (53.57%), Query Frame = 2

Query:   14 ICLMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKT----FDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            + L + +VA  E    +E+P  EDG+L ++ L   F    G++YR   TG +RG  V D +L  P G  W ++++ CV+ +  +        + NS ++  +++T     D+I LGLP   T++   +YF  FG++ +++
Sbjct:    1 MSLSYVQVAEDEGEEPIEVPCEEDGTLLLTTLAAQFPGTCGLKYRNPGTGTMRGVRVTDGKLLPPPGSGWGNSLYICVFPKVTENKRKSCDQLENSSAKTKRMETKHKCSDLIVLGLPWKTTEQELRQYFESFGEVLMAQ 140

HSP 2 Score: 68.1662 bits (165), Expect = 4.617e-26
Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAK-MDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF---EAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            +SKG+GF+R+ N++ Q+  +   H+I      +R+P +K    +   RK+F+   T  +T + + EYF+ FG++ ++F+P      AF+TF   E  +S+      GE H V G  ++V     K
Sbjct:  149 QSKGFGFIRFSNYESQARALSKRHLIDGRWCDVRIPNSKDGQVAELNRKVFIGRCTEDITADDLEEYFSKFGEVTDVFIPKPFRAFAFVTFLHPEVAQSLC-----GEDHIVKGASLLVSSAVPK 268

[Close]

BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: A0A094ZHI5 (TAR DNA-binding protein 43 OS=Schistosoma haematobium OX=6185 GN=MS3_00403 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.783e-25
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKT-FDMISLGLPDDITDESFYRYFSKFGKL 409
            + K+  TE+   +E+P  +D +L +S L   F +C G++YR   +G  RG  + DD+L  P    W +N F CV+ +  K+  + +S  +    ++F  KT  D+I L LP    +E+   YFS++G L
Sbjct:    6 YVKICETEDDQPIEVPLEDDDTLLLSTLTAQFPDCTGLKYRSGDSGCYRGVRLLDDRLFPPADGQWHENTFCCVFPKCSKRKADEDSLDSKMKQKRFDKKTCTDLIVLNLPWRADEETLRDYFSQYGDL 134

HSP 2 Score: 67.0106 bits (162), Expect = 1.783e-25
Identity = 34/123 (27.64%), Postives = 64/123 (52.03%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            +SKGYGF+R+ ++  Q  C+   H I N    +R+P +KM  D     RK+ +  +T  ++ E + ++F+ +G++ ++F+P      AF+TF+  E    +   G+   + G  + V     K
Sbjct:  147 QSKGYGFIRFADYTAQVMCLAERHTIENRQCDVRIPISKMEGDRQEVSRKVHIGRLTEDISPETLRQHFSQYGRVSDVFIPKPFRSFAFITFDDPEVAASL--LGKDQEIQGIRISVGSAVPK 267

[Close]

BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Match: K1PHE2 (TAR DNA-binding protein 43 OS=Crassostrea gigas OX=29159 GN=CGI_10019609 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.246e-25
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEET-GKKLENPNSNVNNSL------------SEKFQ-LKTFDMISLGLPDDITDESFYRYFSKFGKL 409
             + +VA  E    +E+P+ EDG+L +S L   F    G++YR   TG++RG  + D +L  P  + WS+ ++  V+ +T  KK + P +N + S             S+KF+  +  D+I LGLP   T+E   +YFS+FG+L
Sbjct:    3 QYIQVAEEEGEEPMEVPSEEDGTLLLSTLSAQFPGACGLKYRNPDTGSMRGIRLADGRL-YPPDIEWSNRIYVAVFPKTENKKKQGPGNNASVSTGSPDEQEGGHHKSKKFERQRCSDLIVLGLPWKSTEEDLRKYFSQFGEL 144

HSP 2 Score: 72.7886 bits (177), Expect = 2.246e-25
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSS-TCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            +SKG+GF+R+ ++D Q +C+   H+I      +R+P +K  +     RK+FV   T  +T E +  YF  FG++V++F+P      AF+TF   E    +   GE H + G  V +     K
Sbjct:  157 QSKGFGFIRFADYDSQFKCMSQRHMIDGRWCDVRIPNSKEGAQQIMNRKVFVGRCTEDMTAEDLRNYFGKFGEVVDVFIPKPFRAFAFVTFADPEVSQNL--CGEDHIIKGASVHISSAAPK 276

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275])

HSP 1 Score: 63.929 bits (154), Expect = 3.755e-20
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   +++    YFS FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-DADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTSEQDLKDYFSTFGEV 131

HSP 2 Score: 54.6842 bits (130), Expect = 3.755e-20
Identity = 27/96 (28.12%), Postives = 51/96 (53.12%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-------DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K        D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTF 240

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:103025275])

HSP 1 Score: 63.1586 bits (152), Expect = 9.986e-20
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ EDG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K++  ++     +    Q KT D+I LGLP   +++    YFS FG++
Sbjct:    5 YIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEGVLHAP-DADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQ-KTSDLIVLGLPWKTSEQDLKDYFSTFGEV 131

HSP 2 Score: 54.299 bits (129), Expect = 9.986e-20
Identity = 27/96 (28.12%), Postives = 51/96 (53.12%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-------DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K        D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTF 240

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:103044966])

HSP 1 Score: 58.151 bits (139), Expect = 6.500e-18
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ QS+ I   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  149 SKGFGFVRFGEWETQSKVIAQRHMIDGRWCDCKLPNSKQGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTF 239

HSP 2 Score: 53.1434 bits (126), Expect = 6.500e-18
Identity = 37/133 (27.82%), Postives = 66/133 (49.62%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNS----NVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            M+ +VA  EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +     +N         +++  ++   KT D+I LGLP   +++    YFS FG++
Sbjct:    4 MYIRVAEEENEEPMEIPSEDDGTVLLSTVSAQFPGACGLRYRSPISQCMRGVRLVEGVLHAPEN-GWGNLVYVVNYPKEPALPDNKRKMDEIEASSAKMKRGDHKTSDLIVLGLPWKTSEQDLKDYFSTFGEV 135

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: hnrnpd (heterogeneous nuclear ribonucleoprotein D0 [Source:NCBI gene;Acc:103022948])

HSP 1 Score: 51.9878 bits (123), Expect = 5.806e-7
Identity = 29/106 (27.36%), Postives = 55/106 (51.89%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIR-TEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHA-----FLTFEAEESILRIF 738
            +S+G+GF+ +   +   + I+  EH +    +  +   A M S    +K+FV  ++P   +E I EYFN +G++  I +P  +  +      F+TF+ EE + +I 
Sbjct:   89 RSRGFGFVLFKEAESVEKVIQQKEHKLNGKVIDPKKAKA-MKSKEPVKKIFVGGLSPDTPEEKIREYFNAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIM 193

HSP 2 Score: 22.3274 bits (46), Expect = 5.806e-7
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 2

Query:  335 MISLGLPDDITDESFYRYFSKFGKL 409
            M   GL  D T +    YFSKFG++
Sbjct:   52 MFVGGLSWDTTKKDLKDYFSKFGEV 76

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Match: hnrnpa1a (heterogeneous nuclear ribonucleoprotein A1-like [Source:NCBI gene;Acc:103021383])

HSP 1 Score: 52.373 bits (124), Expect = 1.258e-6
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTE-HVIGNTTVCLRLPTAKMDSS-----TCKRKLFVTNITPSVTQEHILEYFNVFGKI--VEIFMPPASNPH---AFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEM 810
            +S+G+GF+ Y N ++    +    H +    V  +   ++ DS+        +K+FV  I     + H+ +YF+ FG+I  +EI +   S      AF+TF   +S+ RI    + H + G    V +  ++QEM
Sbjct:   53 RSRGFGFVTYANVEEVDAAMNARPHKVDGRLVEPKRAVSREDSNKPFAHMTVKKIFVGGIKEDTEESHLRDYFDQFGRIEAIEIMVDRGSGKKRGFAFVTFSDHDSVDRIV-IQKYHTINGHNSEVRKALSRQEM 186

HSP 2 Score: 20.4014 bits (41), Expect = 1.258e-6
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 2

Query:  347 GLPDDITDESFYRYFSKFGKL 409
            GL  + TD+S   YF ++G L
Sbjct:   20 GLSFETTDDSLRAYFEQWGTL 40

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009806.1 (pep scaffold:Pmarinus_7.0:GL479354:9188:12030:-1 gene:ENSPMAG00000008859.1 transcript:ENSPMAT00000009806.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.929 bits (154), Expect = 6.254e-22
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFH-------CVYE-ETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            + K+A  EN   VE+P  +DG+L +S +   F   VG+RYR     + RG  + D  L  P    W+   F+       CV   E  +K+E  +   + S   + + +  D++ LGLP   T++    YFS FG + +S+
Sbjct:    4 YVKIAEDENELPVEVPCEDDGTLLVSNVAAQFPGAVGLRYRPPDAQSFRGVRLVDGVLHPPEN-GWASYTFYVNFPKDPCVLGLENKRKMEEVDM-ASASKMLRSEPRVSDLVVLGLPWTTTEDELKDYFSAFGSVVLSQ 141

HSP 2 Score: 58.5362 bits (140), Expect = 6.254e-22
Identity = 29/94 (30.85%), Postives = 50/94 (53.19%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKR-KLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAE 717
            KSKGYGF+R+ + + Q + +   H+IG      +LP +KM  +   R ++FV      +T E +  +F  FG + ++++P       F+TF  E
Sbjct:  150 KSKGYGFVRFADHESQLKAMGMRHMIGGRWCDAKLPQSKMYPTDPDRNRIFVGRCPEDITPEDLRSFFGQFGDVTDVYIPKPFRSFGFVTFANE 243

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Match: TARDBP (TAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571])

HSP 1 Score: 58.9214 bits (141), Expect = 8.392e-12
Identity = 27/92 (29.35%), Postives = 53/92 (57.61%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAK---MDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q + +   H+I       +LP +K   +  +   RK+FV   T  +T + + ++F+ FG++ ++F+P      AF+TF
Sbjct:   65 SKGFGFVRFRDYETQLKVLAQRHMIDGRWCDCKLPNSKEQQVGDAFRSRKIFVGRCTEDITADDLRQFFSQFGEVTDVFIPKPFRAFAFVTF 156

HSP 2 Score: 29.261 bits (64), Expect = 8.392e-12
Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 2

Query:  323 KTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            KT D+I LGLP   +++    YFS FG++ +++
Sbjct:   23 KTSDLIVLGLPWKASEQDIRDYFSTFGEVLMAQ 55

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Match: EDO44940 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RU25])

HSP 1 Score: 62.7734 bits (151), Expect = 2.188e-21
Identity = 38/146 (26.03%), Postives = 73/146 (50.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEMLKLGTSKMENNGHVYSNDLYDN 876
            +S+G+GF+R+   +D    + T H I      +RLP  K + +  K KLFV  +  S T++ ++EYF  FG++ ++++P       F+TF + E   ++    ++HR+ G  + +     K       T+K   +G+ +   +  N
Sbjct:  154 RSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVRLPRPKEELNVPK-KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTFASGELAKKV--LSQNHRISGSLLNITFAEPKS------TAKGMGSGYAWGGIIVQN 290

HSP 2 Score: 58.5362 bits (140), Expect = 2.188e-21
Identity = 37/127 (29.13%), Postives = 57/127 (44.88%), Query Frame = 2

Query:   62 VEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETG------KKLENP-NSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            +EI   EDG+L +S +   F    G+RYR   T   RG  + +D L  P    W D +F  V  +        K  E+P        +++   +   D+I LGLP   T+     YF++FG++   E
Sbjct:   19 IEIEAEEDGTLLLSNVNGQFPGACGLRYRNPETQAFRGVRLVEDVLYPPFEDGWGDTLFLVVPSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCE 145

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545])

HSP 1 Score: 67.0106 bits (162), Expect = 4.256e-23
Identity = 41/130 (31.54%), Postives = 68/130 (52.31%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            ++ +VA  EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K+E  ++     +   FQ KT D+I LGLP   T++    YFS FG++
Sbjct:    4 LYIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPEN-EWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131

HSP 2 Score: 61.6178 bits (148), Expect = 4.256e-23
Identity = 29/91 (31.87%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q++ I   H+I       +LP +K+  D     RK+FV   T  +T + + +YF  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSKVCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTF 235

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbpl (TAR DNA binding protein [Source:NCBI gene;Acc:101173545])

HSP 1 Score: 67.0106 bits (162), Expect = 5.375e-23
Identity = 41/130 (31.54%), Postives = 68/130 (52.31%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGK-KLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            ++ +VA  EN   +EIP+ +DG++ +S +   F    G+RYR   +  +RG  + +  L  P    W + V+   Y +  K K+E  ++     +   FQ KT D+I LGLP   T++    YFS FG++
Sbjct:    4 LYIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRNPESQCMRGVRLVEGVLHAPEN-EWGNLVYVVNYPKDNKRKMEEIDAASAVKVKRGFQ-KTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131

HSP 2 Score: 61.6178 bits (148), Expect = 5.375e-23
Identity = 29/91 (31.87%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+ +++ Q++ I   H+I       +LP +K+  D     RK+FV   T  +T + + +YF  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFADYETQTKVITQRHMIDGRWCDCKLPNSKVCPDEPMRSRKIFVGRCTEDMTPDELRQYFMQYGEVTDVFIPKPFRAFAFVTF 235

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: tardbp (TAR DNA-binding protein 43-like [Source:NCBI gene;Acc:101167445])

HSP 1 Score: 57.3806 bits (137), Expect = 2.037e-18
Identity = 28/91 (30.77%), Postives = 50/91 (54.95%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTF 708
            SKG+GF+R+  ++ Q + I   H+I       +LP +K   D     RK+FV   T  +T + + ++F  +G++ ++F+P      AF+TF
Sbjct:  145 SKGFGFVRFTEYEAQEKVISQRHMIDGRWCDCKLPNSKQGPDEPLRSRKVFVGRCTEDMTTDDLRQFFMQYGEVTDVFIPKPFRAFAFVTF 235

HSP 2 Score: 55.8398 bits (133), Expect = 2.037e-18
Identity = 36/128 (28.12%), Postives = 65/128 (50.78%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +VA  EN   +EIP+ +DG++ +S +   F    G+R+R   +  +RG  + +  L  P    W + V+   Y +  K+  +     +    ++  +KT D+I LGLP   T++    YFS FG++
Sbjct:    5 YIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEGVLHAPE-TGWGNVVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQDLKDYFSTFGEV 131

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: hnrnpd (heterogeneous nuclear ribonucleoprotein D0-like [Source:NCBI gene;Acc:101171014])

HSP 1 Score: 49.2914 bits (116), Expect = 3.605e-6
Identity = 26/106 (24.53%), Postives = 55/106 (51.89%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECI-RTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHA-----FLTFEAEESILRIF 738
            +S+G+GF+ + + +   +   + EH +    +  +   A M S    +K+FV  ++P   +E + EYF  FG++  I +P  +  +      F+TF+ EE++ ++ 
Sbjct:   95 RSRGFGFVLFKDAESVEKVASQKEHKLNGKVIDPKKAKA-MKSKEPVKKVFVGGLSPDTPEEKVREYFGAFGEVESIELPMENKTNKRRGFCFITFKEEEAVKKVM 199

HSP 2 Score: 21.9422 bits (45), Expect = 3.605e-6
Identity = 15/46 (32.61%), Postives = 24/46 (52.17%), Query Frame = 2

Query:  272 ENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            E   S ++ S +E+ + K   M   GL  D T +    YF+KFG++
Sbjct:   40 EAEGSRIDASKNEEDEGK---MFVGGLSWDTTKKDLKDYFAKFGEV 82

[Close]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Match: hnrnpd (heterogeneous nuclear ribonucleoprotein D0-like [Source:NCBI gene;Acc:101171014])

HSP 1 Score: 48.9062 bits (115), Expect = 4.786e-6
Identity = 26/106 (24.53%), Postives = 55/106 (51.89%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECI-RTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHA-----FLTFEAEESILRIF 738
            +S+G+GF+ + + +   +   + EH +    +  +   A M S    +K+FV  ++P   +E + EYF  FG++  I +P  +  +      F+TF+ EE++ ++ 
Sbjct:   95 RSRGFGFVLFKDAESVEKVASQKEHKLNGKVIDPKKAKA-MKSKEPVKKVFVGGLSPDTPEEKVREYFGAFGEVESIELPMENKTNKRRGFCFITFKEEEAVKKVM 199

HSP 2 Score: 21.9422 bits (45), Expect = 4.786e-6
Identity = 15/46 (32.61%), Postives = 24/46 (52.17%), Query Frame = 2

Query:  272 ENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            E   S ++ S +E+ + K   M   GL  D T +    YF+KFG++
Sbjct:   40 EAEGSRIDASKNEEDEGK---MFVGGLSWDTTKKDLKDYFAKFGEV 82

[Close]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000048176.1 (SMESG000048176.1)

HSP 1 Score: 884.404 bits (2284), Expect = 0.000e+0
Identity = 449/452 (99.34%), Postives = 450/452 (99.56%), Query Frame = 1

Query:  436 PKSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEMLKLGTSKMENNGHVYSNDLYDNTQFNREPSFDECITKACTQSNCETPLDRYQHNFDYSFAQQSVFGQVADXXXXXXXXXXXXXXXXXDQQNSEHQHKDQFAYDIYQSQTVHPDQGYHRHCQSLYLDDHQNQLYPDSTDSYQSTDFNYTTELQQFPSNSLQDPSITNQQFPQKLYENLPIHNYQTDNQTFSNQSFIRKNVPNQQYLQRSIPQNSNAIANQNSPYSYNPVHLKETNNSEIGGNMTSPIISEIVYRVLEQASLPNEKDILVKLLIEQLLSPKPNTTLGSSCENDAINLEKLIKLVQNPNVLDSIIQMSENKLGDVFNRNK 1791
            PKSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEMLKLGTSKMENNGHVYSNDLYDNTQFNREPSFDECITKA TQSNCETPLDRYQHNFDYSFAQQSVFGQVADQHNYYYPHQYQHEEYNYDQQNSEHQHKDQFAYDIYQSQTVHPDQGYHRHCQSLYLDDHQNQLYPDSTDSYQSTDFNYTTELQQFPSNSLQDPSITNQQFPQKLYENLPIHNYQTDNQTFSNQSFIRKNVPNQQYLQRSIPQNSNAIANQNSPYSYNPVHLKETNNSEIGG+MTSPIISEIVYRVLEQASLPNEKDILVKLLIEQLL PKPNTTLGSSCENDAINLEKLIKLVQNPNVLDSIIQMSENKLGDVFNRNK
Sbjct:  141 PKSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTKQEMLKLGTSKMENNGHVYSNDLYDNTQFNREPSFDECITKAFTQSNCETPLDRYQHNFDYSFAQQSVFGQVADQHNYYYPHQYQHEEYNYDQQNSEHQHKDQFAYDIYQSQTVHPDQGYHRHCQSLYLDDHQNQLYPDSTDSYQSTDFNYTTELQQFPSNSLQDPSITNQQFPQKLYENLPIHNYQTDNQTFSNQSFIRKNVPNQQYLQRSIPQNSNAIANQNSPYSYNPVHLKETNNSEIGGDMTSPIISEIVYRVLEQASLPNEKDILVKLLIEQLLCPKPNTTLGSSCENDAINLEKLIKLVQNPNVLDSIIQMSENKLGDVFNRNK 592

HSP 2 Score: 276.559 bits (706), Expect = 9.545e-83
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 2

Query:   23 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKLKISE 421
            MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMI+LGLPDDITDESFYRYFSKFGKLK+ E
Sbjct:    1 MFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMIALGLPDDITDESFYRYFSKFGKLKMCE 133

[Close]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000042285.1 (SMESG000042285.1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.851e-27
Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 1

Query:  442 SKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKMDSSTCKR-KLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEESILRIFRFGESHRVFGGYVVVERVYTK 801
            S+G  + R+     Q+ C+   HV+  T + +R+P  K++    +  KL+V+N+  ++T+E +  YF+ FG ++ +F+PP     AF+TF  ++SI  + + G++H   G  V V RV  K
Sbjct:  155 SRGVAYFRFSGIKSQNLCLSATHVVDKTKIMIRIPNEKINIKERESSKLYVSNVCNTLTREDLRAYFHQFGHVIHVFLPPDKRNFAFVTFLHDKSIELVMKEGQTHCFNGARVNVYRVMEK 275

HSP 2 Score: 62.7734 bits (151), Expect = 1.851e-27
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = 2

Query:   26 FAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKK-LENPNSNVN--------NSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            + +V   +N   VE+P + D +L  + L   F    G++YR      +R     D +  L   + W D +F C   ++ +K LENPN             S+ +KF   TFD+I++GL  D T+     Y ++FGKL
Sbjct:    6 YVRVKGIDNLEIVELPLDLDNTLSFAVLSSQFPYSTGLKYRNSKNNQIRTVRRTDGKFFLSPDLNWDDFLFFCCCSQSKRKMLENPNEKSQIQKKPETLKSIFQKFP-DTFDLIAIGLSYDTTENDLTDYLNRFGKL 141

[Close]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.669e-22
Identity = 31/97 (31.96%), Postives = 59/97 (60.82%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM--DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEES 723
            KSKGY F+R+ ++D Q  C+  +H I N    +++P +KM  +++  + K+ V  ++ +VT + +  +FN +GK+  I++P      AF++FE E +
Sbjct:  142 KSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDEST 238

HSP 2 Score: 56.225 bits (134), Expect = 6.669e-22
Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 2

Query:   62 VEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            +E+P  EDG+L +S L   F    G++Y+ K TG  RG     D+   P    W    + CV  +  K+  +          +    K  D+I L +P    DE+   YFSKFG +
Sbjct:   15 IELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRF-YPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDV 129

[Close]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 63.929 bits (154), Expect = 1.191e-20
Identity = 30/100 (30.00%), Postives = 58/100 (58.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-----DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEES 723
            KSKGY F+R+ ++D Q  C+  +H I N    +++P +K      +++  + K+ V  ++ +VT + +  +FN +GK+  I++P      AF++FE E +
Sbjct:  142 KSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDEST 241

HSP 2 Score: 56.225 bits (134), Expect = 1.191e-20
Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 2

Query:   62 VEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            +E+P  EDG+L +S L   F    G++Y+ K TG  RG     D+   P    W    + CV  +  K+  +          +    K  D+I L +P    DE+   YFSKFG +
Sbjct:   15 IELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRF-YPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDV 129

[Close]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Match: SMESG000012144.1 (SMESG000012144.1)

HSP 1 Score: 63.929 bits (154), Expect = 1.201e-20
Identity = 30/100 (30.00%), Postives = 58/100 (58.00%), Query Frame = 1

Query:  439 KSKGYGFLRYVNFDDQSECIRTEHVIGNTTVCLRLPTAKM-----DSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLTFEAEES 723
            KSKGY F+R+ ++D Q  C+  +H I N    +++P +K      +++  + K+ V  ++ +VT + +  +FN +GK+  I++P      AF++FE E +
Sbjct:  142 KSKGYAFIRFADYDAQVMCLAEQHCIDNRWCEVKIPYSKSVQMNPEANEVRNKIHVGRLSEAVTADVLRSFFNQYGKVESIYIPRPFRSFAFVSFEDEST 241

HSP 2 Score: 56.225 bits (134), Expect = 1.201e-20
Identity = 35/116 (30.17%), Postives = 52/116 (44.83%), Query Frame = 2

Query:   62 VEIPTNEDGSLRISELRKYFVNCVGIRYRCKSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNSLSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKL 409
            +E+P  EDG+L +S L   F    G++Y+ K TG  RG     D+   P    W    + CV  +  K+  +          +    K  D+I L +P    DE+   YFSKFG +
Sbjct:   15 IELPLEEDGTLLLSTLTCQFPKATGLKYKSKDTGIYRGVRFASDRF-YPPPEGWETYTYSCVLFKDNKRKSDDEQYTLAKTKKMEGKKCTDLIVLNIPWRTDDEALKMYFSKFGDV 129

The following BLAST results are available for this feature:

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
BLAST of TAR DNA-binding protein 43 vs. TrEMBL
BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST

BLAST of TAR DNA-binding protein 43 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TARDBP	4.694e-21	29.46	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]
TARDBP	4.997e-21	29.46	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]
TARDBP	5.656e-21	29.46	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]
TARDBP	5.656e-21	29.46	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]
TARDBP	5.988e-21	29.46	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TAR DNA-binding protein 43 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
TBPH	6.941e-23	28.15	gene:FBgn0025790 transcript:FBtr0089626	[more]
TBPH	1.489e-22	28.15	gene:FBgn0025790 transcript:FBtr0089625	[more]
TBPH	1.489e-22	28.15	gene:FBgn0025790 transcript:FBtr0089624	[more]
TBPH	1.489e-22	28.15	gene:FBgn0025790 transcript:FBtr0089627	[more]
TBPH	1.489e-22	28.15	gene:FBgn0025790 transcript:FBtr0301643	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tardbpl	1.271e-20	30.23	TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB...	[more]
tardbpl	1.271e-20	30.23	TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB...	[more]
tardbpl	1.271e-20	30.23	TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB...	[more]
tardbpl	6.458e-20	30.23	TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB...	[more]
tardbpl	6.458e-20	30.23	TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
jarid2	9.925e-21	28.46	jumonji and AT-rich interaction domain containing ...	[more]
jarid2	1.998e-14	28.46	jumonji and AT-rich interaction domain containing ...	[more]
psd3	3.808e-6	30.17	pleckstrin and Sec7 domain containing 3 [Source:Xe...	[more]
hnrnpa2b1	9.472e-6	28.15	heterogeneous nuclear ribonucleoprotein A2/B1 [Sou...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Tardbp	7.935e-21	29.46	TAR DNA binding protein [Source:MGI Symbol;Acc:MGI...	[more]
Tardbp	7.935e-21	29.46	TAR DNA binding protein [Source:MGI Symbol;Acc:MGI...	[more]
Tardbp	8.342e-21	29.46	TAR DNA binding protein [Source:MGI Symbol;Acc:MGI...	[more]
Tardbp	8.409e-21	29.46	TAR DNA binding protein [Source:MGI Symbol;Acc:MGI...	[more]
Tardbp	8.409e-21	29.46	TAR DNA binding protein [Source:MGI Symbol;Acc:MGI...	[more]

BLAST of TAR DNA-binding protein 43 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q13148\|TADBP_HUMAN	3.660e-20	29.46	TAR DNA-binding protein 43 OS=Homo sapiens OX=9606...	[more]
sp\|Q28F51\|TADBP_XENTR	3.789e-20	28.46	TAR DNA-binding protein 43 OS=Xenopus tropicalis O...	[more]
sp\|Q921F2\|TADBP_MOUSE	6.242e-20	29.46	TAR DNA-binding protein 43 OS=Mus musculus OX=1009...	[more]
sp\|Q5R5W2\|TADBP_PONAB	1.375e-19	30.77	TAR DNA-binding protein 43 OS=Pongo abelii OX=9601...	[more]
sp\|Q5ZLN5\|TADBP_CHICK	6.277e-19	30.77	TAR DNA-binding protein 43 OS=Gallus gallus OX=903...	[more]

BLAST of TAR DNA-binding protein 43 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
R7TFC3	1.149e-27	36.57	Uncharacterized protein OS=Capitella teleta OX=283...	[more]
A0A4Y2HRL7	3.375e-26	29.29	TAR DNA-binding protein 43 OS=Araneus ventricosus ...	[more]
A0A087TT60	4.617e-26	29.29	TAR DNA-binding protein 43 (Fragment) OS=Stegodyph...	[more]
A0A094ZHI5	1.783e-25	32.56	TAR DNA-binding protein 43 OS=Schistosoma haematob...	[more]
K1PHE2	2.246e-25	33.57	TAR DNA-binding protein 43 OS=Crassostrea gigas OX...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tardbpl	3.755e-20	30.23	TAR DNA binding protein [Source:NCBI gene;Acc:1030...	[more]
tardbpl	9.986e-20	30.23	TAR DNA binding protein [Source:NCBI gene;Acc:1030...	[more]
tardbp	6.500e-18	31.87	TAR DNA-binding protein 43-like [Source:NCBI gene;...	[more]
hnrnpd	5.806e-7	27.36	heterogeneous nuclear ribonucleoprotein D0 [Source...	[more]
hnrnpa1a	1.258e-6	26.67	heterogeneous nuclear ribonucleoprotein A1-like [S...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ENSPMAT00000009806.1	6.254e-22	30.00	pep scaffold:Pmarinus_7.0:GL479354:9188:12030:-1 g...	[more]
TARDBP	8.392e-12	29.35	TAR DNA binding protein [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of TAR DNA-binding protein 43 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO44940	2.188e-21	26.03	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of TAR DNA-binding protein 43 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tardbpl	4.256e-23	31.54	TAR DNA binding protein [Source:NCBI gene;Acc:1011...	[more]
tardbpl	5.375e-23	31.54	TAR DNA binding protein [Source:NCBI gene;Acc:1011...	[more]
tardbp	2.037e-18	30.77	TAR DNA-binding protein 43-like [Source:NCBI gene;...	[more]
hnrnpd	3.605e-6	24.53	heterogeneous nuclear ribonucleoprotein D0-like [S...	[more]
hnrnpd	4.786e-6	24.53	heterogeneous nuclear ribonucleoprotein D0-like [S...	[more]

BLAST of TAR DNA-binding protein 43 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000048176.1	9.545e-83	99.34	SMESG000048176.1	[more]
SMESG000042285.1	1.851e-27	31.40	SMESG000042285.1	[more]
SMESG000012144.1	6.669e-22	31.96	SMESG000012144.1	[more]
SMESG000012144.1	1.191e-20	30.00	SMESG000012144.1	[more]
SMESG000012144.1	1.201e-20	30.00	SMESG000012144.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30015586 ID=SMED30015586|Name=TAR DNA-binding protein 43|organism=Schmidtea mediterranea sexual|type=transcript|length=2430bp
CTATATAAATCTTATATGTTTGATGTTTGCTAAAGTGGCATCCACAGAAA
ATTCAAACTATGTAGAAATACCAACAAATGAAGATGGTTCTTTAAGAATA
AGTGAATTGAGGAAATATTTTGTAAACTGTGTAGGAATACGATATCGATG
TAAATCAACTGGAAATTTAAGGGGCACTTGGGTGTTTGATGATCAATTAC
AGTTGCCTTTGGGGGTTACATGGAGCGATAATGTGTTTCATTGCGTATAT
GAAGAAACTGGAAAAAAATTAGAAAATCCAAATTCTAATGTGAATAATAG
TTTAAGTGAAAAATTTCAATTGAAAACATTCGATATGATCTCTCTCGGTT
TGCCAGATGATATCACCGATGAATCCTTCTATCGTTATTTCTCCAAATTC
GGTAAATTAAAAATCTCAGAAAAAACTTGAAGAAACCCAAATCGAAAGGT
TACGGATTCCTGAGATATGTAAATTTCGACGACCAAAGCGAGTGCATTAG
AACCGAGCATGTAATTGGAAATACAACTGTTTGTTTACGCCTTCCAACAG
CTAAAATGGACAGTTCAACATGTAAACGGAAACTATTTGTCACCAACATA
ACTCCATCTGTCACTCAGGAACATATTCTCGAATATTTCAATGTATTTGG
AAAGATTGTGGAAATTTTCATGCCTCCAGCATCGAATCCACACGCGTTTC
TGACATTCGAGGCAGAGGAATCGATTTTACGAATATTTAGATTTGGGGAA
TCTCATAGAGTGTTTGGTGGATATGTTGTTGTTGAAAGGGTCTACACGAA
ACAGGAAATGCTAAAATTGGGCACCTCGAAAATGGAAAATAATGGACATG
TCTATTCAAATGATTTATATGATAATACTCAATTCAATCGCGAACCAAGC
TTCGATGAATGCATCACAAAGGCCTGTACCCAGTCAAACTGTGAAACACC
GCTTGATCGATATCAACACAATTTTGATTATTCTTTTGCTCAACAGAGTG
TATTTGGTCAGGTAGCAGATCAACATAATTATTATTATCCTCATCAATAT
CAACACGAAGAGTACAATTACGATCAGCAGAATTCTGAGCATCAACATAA
AGATCAATTTGCATACGATATATATCAATCTCAAACAGTGCATCCGGATC
AAGGGTATCATAGGCATTGCCAATCACTATATCTCGACGATCATCAAAAT
CAATTATATCCAGATTCCACAGATTCTTACCAGAGTACTGATTTCAACTA
CACAACTGAACTTCAGCAGTTTCCTTCAAATTCACTTCAAGACCCGTCAA
TTACAAATCAGCAATTTCCTCAAAAGTTATATGAAAACCTCCCGATTCAC
AATTATCAAACAGATAACCAAACATTTTCAAATCAATCCTTTATCAGAAA
GAATGTACCAAATCAGCAGTATTTACAGCGGTCAATTCCACAGAATTCAA
ATGCAATAGCCAATCAGAATTCACCATATTCCTATAATCCTGTTCATTTG
AAGGAGACAAATAACTCTGAAATTGGTGGTAATATGACGTCACCAATCAT
ATCTGAGATCGTTTACCGAGTTCTCGAACAAGCCTCATTGCCAAATGAGA
AAGATATACTTGTCAAGTTATTGATTGAGCAGTTACTCTCTCCGAAACCA
AATACCACCCTCGGTTCCTCGTGTGAGAATGACGCAATCAATTTAGAAAA
ACTGATCAAACTTGTACAAAATCCAAATGTTCTCGATTCAATAATTCAAA
TGTCCGAGAACAAACTTGGTGATGTATTCAACAGGAATAAATGAAAGGTT
CATAATTACCTCCAATAATCATCTCGTGCTTATATTGTTTCATATTTATC
TTTCTTGGGTCTAATTTATTTATTTTTTAGATTTCTACATATCCGGATGT
TATCTTGTTAAAAATTTTATTTCCTTGCTGAAAGTTGATTGATGTCATGA
ATGCTTTTCATTTAATTCCTTTTAAAATATTTCACTATATCATTAATATA
TTTCACTGAAAGTAACTGCTGCATGGGGAGTTTTAAAATCCTAATTTAGT
TATTAATTTTTGCACCAAAACATCGATTCGCATCGTTGTGAAATTGCCTC
GTTAGTATTTCTATTTGCGCTGCTAAAATTTTTTTACAAAAGAGGATTTA
CATTTATTTCATATTTCTATGTAAACTTAAAAAAAAATTATCACATGAGT
TTTAGTTTAAATAAATATATTTATTTACATAATAAGTAGTATATATTAAT
ATAATGCGGTCCTCGCTTTAAGGCCAATCCGTATCTGAAGTTGGCAGCAT
AGTATTTTCTATTATAAAGGTATAGTATCCTCTTGTAACCTTGTGGTTGT
TATGGCAGGTAACGTACAATGTGCGTTATTGATTTGCGGAAAAGTGTGGA
AAATATTTCAATTTTATTTGTCAACATTTG

protein sequence of SMED30015586-orf-1

>SMED30015586-orf-1 ID=SMED30015586-orf-1|Name=SMED30015586-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp
YINLICLMFAKVASTENSNYVEIPTNEDGSLRISELRKYFVNCVGIRYRC
KSTGNLRGTWVFDDQLQLPLGVTWSDNVFHCVYEETGKKLENPNSNVNNS
LSEKFQLKTFDMISLGLPDDITDESFYRYFSKFGKLKISEKT*

protein sequence of SMED30015586-orf-2

>SMED30015586-orf-2 ID=SMED30015586-orf-2|Name=SMED30015586-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=413bp
MDSSTCKRKLFVTNITPSVTQEHILEYFNVFGKIVEIFMPPASNPHAFLT
FEAEESILRIFRFGESHRVFGGYVVVERVYTKQEMLKLGTSKMENNGHVY
SNDLYDNTQFNREPSFDECITKACTQSNCETPLDRYQHNFDYSFAQQSVF
GQVADQHNYYYPHQYQHEEYNYDQQNSEHQHKDQFAYDIYQSQTVHPDQG
YHRHCQSLYLDDHQNQLYPDSTDSYQSTDFNYTTELQQFPSNSLQDPSIT
NQQFPQKLYENLPIHNYQTDNQTFSNQSFIRKNVPNQQYLQRSIPQNSNA
IANQNSPYSYNPVHLKETNNSEIGGNMTSPIISEIVYRVLEQASLPNEKD
ILVKLLIEQLLSPKPNTTLGSSCENDAINLEKLIKLVQNPNVLDSIIQMS
ENKLGDVFNRNK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003677	DNA binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..77 e-value: 3.3E-9 score: 46.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..58 e-value: 2.8E-9 score: 36.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..93 score: 10.889
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..86 e-value: 6.8E-11 score: 44.0
None	No IPR available	CDD	cd00590	RRM_SF	coord: 10..77 e-value: 4.10506E-11 score: 56.5445
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 7..106

Main menu

TAR DNA-binding protein 43

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

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