SMED30015560
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015560 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Alignments
SMED30015560 aligns in the following genomic locations:
Homology
BLAST of SMED30015560 vs. Ensembl Zebrafish
Match: unm_sa808 (un-named sa808 [Source:ZFIN;Acc:ZDB-GENE-120727-21]) HSP 1 Score: 51.6026 bits (122), Expect = 9.429e-7 Identity = 50/198 (25.25%), Postives = 86/198 (43.43%), Query Frame = 3 Query: 735 LENSIAGMNADKIRLISKEIKTAMRNGKLLAQKITIFQQTV---NRNVDKI--TGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 L + I GM L ++ R + L K F+ V NR V++ T E + ++ + Q+ E L K++++ + D + + DGV +WRI S FT+ +AP +FS F ++ + YKM L I ++ + ++ VV + D L WPF VT+ +++ N E Sbjct: 26 LLHYIMGMKVSLEGLEKTKVADLGRRCQDLEVKAGTFEDVVCVLNREVERFATTMEASNRQHRLDQDKIEALSNKVRQLERQVGVKDLTVAEMEGRLREMSATTFDGVFIWRI-SDFTKKRQDAIAGRAP-AMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGMSDALLKWPFNQKVTLMLLDQSNRE 221
BLAST of SMED30015560 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 50.0618 bits (118), Expect = 6.147e-6 Identity = 46/177 (25.99%), Postives = 85/177 (48.02%), Query Frame = 3 Query: 810 NGKLLAQKITIFQQTV---NRNVDK--ITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 G + +K+T + V N+ V++ +T E ++ + QE E L K++++ D ++ A +E++L + DGV +W+I + F+R +AP +FS F S+ + YKM L + ++ S ++ VV D L WPF VT+ +++ +N E Sbjct: 302 GGPGVQKKVTTLENIVCVLNKEVERSALTMEAISRQHRLDQEKIENLSNKVRQLERTLTTRDLQL----AESEQSLRELQFCTYDGVFIWKI-AEFSRRRQDAVAGRAP-AMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNRE 472
BLAST of SMED30015560 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 50.0618 bits (118), Expect = 6.147e-6 Identity = 46/177 (25.99%), Postives = 85/177 (48.02%), Query Frame = 3 Query: 810 NGKLLAQKITIFQQTV---NRNVDK--ITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 G + +K+T + V N+ V++ +T E ++ + QE E L K++++ D ++ A +E++L + DGV +W+I + F+R +AP +FS F S+ + YKM L + ++ S ++ VV D L WPF VT+ +++ +N E Sbjct: 302 GGPGVQKKVTTLENIVCVLNKEVERSALTMEAISRQHRLDQEKIENLSNKVRQLERTLTTRDLQL----AESEQSLRELQFCTYDGVFIWKI-AEFSRRRQDAVAGRAP-AMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNRE 472
BLAST of SMED30015560 vs. Ensembl Zebrafish
Match: traf2b (Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]) HSP 1 Score: 49.6766 bits (117), Expect = 7.028e-6 Identity = 46/177 (25.99%), Postives = 85/177 (48.02%), Query Frame = 3 Query: 810 NGKLLAQKITIFQQTV---NRNVDK--ITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 G + +K+T + V N+ V++ +T E ++ + QE E L K++++ D ++ A +E++L + DGV +W+I + F+R +AP +FS F S+ + YKM L + ++ S ++ VV D L WPF VT+ +++ +N E Sbjct: 315 GGPGVQKKVTTLENIVCVLNKEVERSALTMEAISRQHRLDQEKIENLSNKVRQLERTLTTRDLQL----AESEQSLRELQFCTYDGVFIWKI-AEFSRRRQDAVAGRAP-AMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMKGKYDALLKWPFSQKVTLMLLDQNNRE 485
BLAST of SMED30015560 vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 52.7582 bits (125), Expect = 9.737e-7 Identity = 48/179 (26.82%), Postives = 85/179 (47.49%), Query Frame = 3 Query: 804 MRNGKLLAQKITIFQQTV---NRNVDKI--TGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 ++ ++L QKI F+ V NR V+++ T E ++ + Q+ E L K++++ D +A E+ +S + DGV +W+I S FTR + P I FS F ++ + YKM L + ++ + ++ VV D L WPF VT+ +++ +N E Sbjct: 276 LQRCQILEQKIATFENIVCVLNREVERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKD----LAMADLEQKVSELEVSTYDGVFIWKI-SDFTRKRQEAVAGRTPAI-FSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLLDHNNRE 448
BLAST of SMED30015560 vs. Ensembl Mouse
Match: Traf2 (TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]) HSP 1 Score: 52.373 bits (124), Expect = 9.992e-7 Identity = 48/179 (26.82%), Postives = 85/179 (47.49%), Query Frame = 3 Query: 804 MRNGKLLAQKITIFQQTV---NRNVDKI--TGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 ++ ++L QKI F+ V NR V+++ T E ++ + Q+ E L K++++ D +A E+ +S + DGV +W+I S FTR + P I FS F ++ + YKM L + ++ + ++ VV D L WPF VT+ +++ +N E Sbjct: 269 LQRCQILEQKIATFENIVCVLNREVERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKD----LAMADLEQKVSELEVSTYDGVFIWKI-SDFTRKRQEAVAGRTPAI-FSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLLDHNNRE 441
BLAST of SMED30015560 vs. UniProt/SwissProt
Match: sp|P39429|TRAF2_MOUSE (TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 6.990e-6 Identity = 48/179 (26.82%), Postives = 85/179 (47.49%), Query Frame = 3 Query: 804 MRNGKLLAQKITIFQQTV---NRNVDKI--TGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHI----IDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 ++ ++L QKI F+ V NR V+++ T E ++ + Q+ E L K++++ D +A E+ +S + DGV +W+I S FTR + P I FS F ++ + YKM L + ++ + ++ VV D L WPF VT+ +++ +N E Sbjct: 269 LQRCQILEQKIATFENIVCVLNREVERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKD----LAMADLEQKVSELEVSTYDGVFIWKI-SDFTRKRQEAVAGRTPAI-FSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLLDHNNRE 441
BLAST of SMED30015560 vs. TrEMBL
Match: I1ZID7 (TNF receptor associated factor-3 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.228e-10 Identity = 47/161 (29.19%), Postives = 80/161 (49.69%), Query Frame = 3 Query: 912 QQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIID---GVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSR------FNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTE 1367 +QE E + ++ K+ + + + I KV E L ID G+ W ++ + K + +FS++F + +K+ L + S FNV L +F +++ L WPF+A+VTI I+N ++ K + K RI +P N +N SD F F + E Sbjct: 36 KQECAEIVTAEVSKLRRDFQEFQERIELKVQNIESYLKQKIDETSGIFSWNVNGISAKRKENQSMFSEYFYTKVSKHKVSLQFTANVSNDINEIGFNVFLFIFSGIQESKLNWPFQANVTIKIVNRSVPDSSKIVTKCFRIEEPPCN-YNWSDPFYFCYDE 195
BLAST of SMED30015560 vs. Ensembl Cavefish
Match: traf2b (TNF receptor associated factor 2 [Source:NCBI gene;Acc:103028261]) HSP 1 Score: 52.7582 bits (125), Expect = 7.457e-7 Identity = 44/161 (27.33%), Postives = 78/161 (48.45%), Query Frame = 3 Query: 834 ITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIM-AKVALTERNLSHIIDGVLMWRIDSTFTR-------LKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 + + + V R V ++ E ++Q++ QE E L K++++ D ++ ++ AL E DGV +W+I S F+R +AP +FS F S+ + YKM L + ++ S ++ VV D L WPF VT+ +++ +N E Sbjct: 316 VCVLNREVERTVLRL--EALTRQQQLDQEKIENLSNKVRQLERTLTMRDLQLAESEQALRELQFC-TYDGVFVWKI-SDFSRRRQDALAGRAP-AMFSPAFYSSKYGYKMCLRLYLNGDGTGRGSHLSLFFVVMRGKYDALLKWPFSQKVTLMLLDQNNRE 471
BLAST of SMED30015560 vs. Ensembl Medaka
Match: unm_sa808 (TNF receptor-associated factor 2 [Source:NCBI gene;Acc:101155367]) HSP 1 Score: 49.2914 bits (116), Expect = 8.654e-6 Identity = 50/201 (24.88%), Postives = 87/201 (43.28%), Query Frame = 3 Query: 735 LENSIAGMNADKIRLISKEIKTA--MRNGKLLAQKITIFQQTV---NRNVDKITGEMNM--KRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRI--------DSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHS------SRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNME 1274 L +S+ A +++L S++ K A R L K F+ V NR V++ T M ++ ++ Q+ E L K++++ D + + DGV +WRI D+ R A +FS F ++ + YKM L I ++ + ++ VV + D L WPF VT+ +++ N E Sbjct: 341 LPSSVGA--ALELQLHSEKTKVAELGRRCTELEVKSGTFENVVCVLNREVERFTTTMEASNRQHKLDQDKIEALSNKVRQLERTVGLKDLTVAEMEGRLREMAATTFDGVFIWRISDFAKKRQDAVAGRAPA---MFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSNRE 536
BLAST of SMED30015560 vs. Planmine SMEST
Match: SMESG000024738.1 (SMESG000024738.1) HSP 1 Score: 811.216 bits (2094), Expect = 0.000e+0 Identity = 431/434 (99.31%), Postives = 433/434 (99.77%), Query Frame = 3 Query: 132 ISKCPFYGIGCDQEYVVFDQMVEHLRLESYTHSKSLIVMLDSIKSSLEEIKKNDEVHKNEIKKLQFNEKLRDQMIDSLNQEIKSIRMENKEQITEKWKKKLETKFDSVRFEIEAKTFDKIRSEMEVKQIENLKTISEIESLKNKIDHLNTCFEVRMEAMNREIKDQAYFMXXXXXXXXXXXXARIKEQEKLTNNVEILRRNLENSIAGMNADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEFGXXXXXXXXXXXXXXXXVDEI 1433 ISKCPFYGIGCDQEYVVFDQMVEHLRLESYTHSKSLIVMLDSIKS+LEEIKKNDEVHKNEIKKLQFNEKLRDQMIDSLNQEIKSIRMENKEQITEKWKK LETKFDSVRFEIEAKTFD+IRSEMEVKQIENLKTISEIESLKNKIDHLNTCFEVRMEAMNREIKDQAYFMKEKNKKDEEELKARIKEQEKLTNNVEILRRNLENSIAGMNADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEFGSDRLLERSSSLLLECSVDEI Sbjct: 11 ISKCPFYGIGCDQEYVVFDQMVEHLRLESYTHSKSLIVMLDSIKSNLEEIKKNDEVHKNEIKKLQFNEKLRDQMIDSLNQEIKSIRMENKEQITEKWKKNLETKFDSVRFEIEAKTFDRIRSEMEVKQIENLKTISEIESLKNKIDHLNTCFEVRMEAMNREIKDQAYFMKEKNKKDEEELKARIKEQEKLTNNVEILRRNLENSIAGMNADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEFGSDRLLERSSSLLLECSVDEI 444
BLAST of SMED30015560 vs. Planmine SMEST
Match: SMESG000070535.1 (SMESG000070535.1) HSP 1 Score: 105.916 bits (263), Expect = 7.087e-24 Identity = 106/435 (24.37%), Postives = 210/435 (48.28%), Query Frame = 3 Query: 138 KCPFYGIGCDQEYVVFDQMVEHLRLESYTHSKSLIVMLDSIKSSLEEIKKNDEVHKNEIKKLQFNEKLRDQMIDSLNQEIKSIRMENKEQITEKWKKKLETKFDSVRFEIEAKTFDKIRSEMEVKQIENLK-TISEIESLKNKIDHLNTCFEVRMEAMNREIKD------------QAYFMXXXXXXXXXXXXARIKEQEKLTNNVEILRRNLENSIAGM-NADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKI--NDRYDKHDQE--IMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFN------VSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEF 1370 KC FY +GC + + + EH L +Y H+K L ++++IK+ + E++K++E +N++K L N +L + +S E++ ++ EN KLE + + +E + +KI SEME ++L+ I E +++K+++ + +E + ++I + + + M ++ + + K+ +++ + NN + ++ E ++ + N + +++ +EI ++KI + Q R+ K + M + + + +T E K KI K DQE +++ ER L + +G W ID+ R K ++ S++F PYKMRL +R+++ N + L ++ ++ L WPF +VTI + N + K + K+C I KP N + SD F F+ +E Sbjct: 127 KCIFYEMGCKETSLTQGTIDEHFILNNYHHNKILTEIIENIKNEIYEMRKSEETSRNQMKSLSENTRLTNVKNESWRLEVQLLKNEN---------SKLENRVST----LEKEFINKI-SEMEANLSKSLEPVIEENKTMKDEVQEFKCRIHIALENIWKKIDEIDSRIDIQCANKETFLMNDEINSIKVDFKSLLEKVNPVENNENKVTKSEEKGLSKIVNINSLQMEIEEI----------SKKIEVLQFNFERHTSKCSKNM----KNVDKSESKTKEIKYYKIMLQQFRQKMDQETNFESRINQLERCLDNKRNGTFEWTIDNLSERKKQSGMIKSEYFYLKMKPYKMRLGMRLNNIEENSDFGLRILLFIYEDIESEWLEWPFSGNVTIKVTNKNKRNISKTVTKYCEIPKPKSNEASSSDRFNFLHSEL 533
BLAST of SMED30015560 vs. Planmine SMEST
Match: SMESG000070535.1 (SMESG000070535.1) HSP 1 Score: 105.531 bits (262), Expect = 9.001e-24 Identity = 106/435 (24.37%), Postives = 210/435 (48.28%), Query Frame = 3 Query: 138 KCPFYGIGCDQEYVVFDQMVEHLRLESYTHSKSLIVMLDSIKSSLEEIKKNDEVHKNEIKKLQFNEKLRDQMIDSLNQEIKSIRMENKEQITEKWKKKLETKFDSVRFEIEAKTFDKIRSEMEVKQIENLK-TISEIESLKNKIDHLNTCFEVRMEAMNREIKD------------QAYFMXXXXXXXXXXXXARIKEQEKLTNNVEILRRNLENSIAGM-NADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKI--NDRYDKHDQE--IMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFN------VSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEF 1370 KC FY +GC + + + EH L +Y H+K L ++++IK+ + E++K++E +N++K L N +L + +S E++ ++ EN KLE + + +E + +KI SEME ++L+ I E +++K+++ + +E + ++I + + + M ++ + + K+ +++ + NN + ++ E ++ + N + +++ +EI ++KI + Q R+ K + M + + + +T E K KI K DQE +++ ER L + +G W ID+ R K ++ S++F PYKMRL +R+++ N + L ++ ++ L WPF +VTI + N + K + K+C I KP N + SD F F+ +E Sbjct: 145 KCIFYEMGCKETSLTQGTIDEHFILNNYHHNKILTEIIENIKNEIYEMRKSEETSRNQMKSLSENTRLTNVKNESWRLEVQLLKNEN---------SKLENRVST----LEKEFINKI-SEMEANLSKSLEPVIEENKTMKDEVQEFKCRIHIALENIWKKIDEIDSRIDIQCANKETFLMNDEINSIKVDFKSLLEKVNPVENNENKVTKSEEKGLSKIVNINSLQMEIEEI----------SKKIEVLQFNFERHTSKCSKNM----KNVDKSESKTKEIKYYKIMLQQFRQKMDQETNFESRINQLERCLDNKRNGTFEWTIDNLSERKKQSGMIKSEYFYLKMKPYKMRLGMRLNNIEENSDFGLRILLFIYEDIESEWLEWPFSGNVTIKVTNKNKRNISKTVTKYCEIPKPKSNEASSSDRFNFLHSEL 551
BLAST of SMED30015560 vs. Planmine SMEST
Match: SMESG000072057.1 (SMESG000072057.1) HSP 1 Score: 102.449 bits (254), Expect = 4.490e-23 Identity = 65/235 (27.66%), Postives = 121/235 (51.49%), Query Frame = 3 Query: 690 EQEKLTNNVEILRRNLENSIAGMNA--------DKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLSHIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRLAIRVHSSRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEF 1370 EQ++L N +E L+ +EN I ++A D+I I EI G+ +++ + + + +K EMN K + +Q E+ E K+ K+ +R + + +++ E+NL ++IDG+ MW+I+ +K ++S++F SN++ Y+ RL + + + ++ S D+ L WPF+A VT+ + + + K + K C I KP S SD F F +++F Sbjct: 196 EQQELLNEMENLKPTVENKINEISAELVNLVRDDRIDSIWNEIDLMKAEGQNMSRGFEVIKHDIG---EKFKLEMNGKLKAMQAEIECQSEMKMSKLCEREKVNQYDFEKRLSEVEKNL-NLIDGIFMWKINK-IEEIKKCGYIWSEYFYSNANSYRQRLRLDAYGDHLWIRFCLYSSPVDIDLDWPFQAEVTLKVASKLWPNSGKTITKNCTIDKPPFGSCECSDEFKFSYSDF 425
BLAST of SMED30015560 vs. Planmine SMEST
Match: SMESG000025120.1 (SMESG000025120.1) HSP 1 Score: 79.7221 bits (195), Expect = 5.632e-16 Identity = 58/211 (27.49%), Postives = 102/211 (48.34%), Query Frame = 3 Query: 759 NADKIRLISKEIKTAMRNGKLLAQKITIFQQTVNRNVDKITGEMNMKRQEIQQEMRETLERKLKKINDRYDKHDQEIMAKVALTERNLS--HIIDGVLMWRIDSTFTRLKAPRILFSKHFSSNSHPYKMRL-----AIRVHSSRFNVSLVVFHSVKDVPLPWPFKASVTISIINPDNMETFKAMRKFCRISKPIMNSFNISDAFIFMFTEF 1370 NA KI+L+ +EI+ + L + ++ ++ ++ + EM Q+I+ E+ +RK + +D D I +K LTE +S I G+ W ID + ++S+ F + ++ YKMRL + ++ L ++ S + WPFKA VT+ I+N N K + K+C I KP++N F +F F++ E Sbjct: 127 NAAKIKLMDEEIRMLKSVNESLIHMMDHWRTMLDNKLESMNSEMRTTFQDIKLEIEGAAKRKQSQ-SDENDILSTSI-SKTKLTEPRISLERKIAGIYTWNIDRVMEKRGKRGSIWSEFFYTRNNHYKMRLQFHPNGFVCTGTGLSIYLFLYPSETNSKGLWPFKADVTMKIVNKANPSKSKILTKYCHIEKPVINPFKCCASFDFIYQEL 335 The following BLAST results are available for this feature:
BLAST of SMED30015560 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of SMED30015560 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of SMED30015560 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SMED30015560 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30015560 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30015560 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30015560 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30015560 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015560 ID=SMED30015560|Name=SMED30015560|organism=Schmidtea mediterranea sexual|type=transcript|length=1637bpback to top protein sequence of SMED30015560-orf-1 >SMED30015560-orf-1 ID=SMED30015560-orf-1|Name=SMED30015560-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=452bp MNIFSFKMFDFFKKPKKISKCPFYGIGCDQEYVVFDQMVEHLRLESYTHSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|