Actin cytoplasmic type 5
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015473 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13Note: Hover over icons to view figure legend
Homology
BLAST of Actin cytoplasmic type 5 vs. Ensembl Fly
Match: udt (gene:FBgn0039113 transcript:FBtr0084464) HSP 1 Score: 277.33 bits (708), Expect = 1.075e-83 Identity = 179/613 (29.20%), Postives = 293/613 (47.80%), Query Frame = 2 Query: 182 FSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXXXXMGFETGFVRSKSQQLDF--------NCKSIIEGIYQFNYK-LTKYSGICDRGSNLIKACQKQGSP-LRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTF 1990 FS E G T+T I + + S G C+ N + + ++ ++ +C+ C R I R+L V + ++ + V+ Q + NC+S +EG++ F Y+ +++G+CD+ I++CQ G+ L N F + + C + +G + C G W + + + + + +YRC + D G+S A C +L++ +P R++ P ++ +EPGC LP NF+G W + + +V I+ THI D+ +Y + +VCR+ + NR +MA +T C D+ CF F+PRHHNIIR+R G ++ F C W F N W Y+ F+ PVPV CP+ G++ F Q G E + T++ GG+T PR ++ C K+ SDL+ C + K+L +D C+ +D GRP+ Y D R+ C+G+W E+ KS+LITYD DP + +RCWVY+R +L+ MS++ + C Q S GA++ ++ + E E D CPM FDDG NP+ N+ + D ++ L F Sbjct: 40 FSWETGLPTLTVIDATSMSSR-----GYCI------NYMRHKGDEYSFVFKERSKDCYHCVRTIIRTLNVFE---KFEGPCVGIPAGQEPTVDYVCRGVKDDQQLITLFNENFVPINCRSSLEGVWHFTYQNRFRFTGVCDKPDARIQSCQTAGTQFLIQNQKFNVTYQQCEGMEGTFTG--------TVEFSCLGDWFVGKNHYFAVANTKESRKDEKYRCFLKNRDDDLYV----GVSITAECNTLKTPET-SPERLKLTP-----VKAEFVEPGCTLPQNFSGEWVNTANIDADVSISETHINETYYPDKARYRKTIYVCRERRGNRVMMARLTVDGCQKDYVCFDFMPRHHNIIRYRKGLAVIKDD--------------FSTVCSWVQFP-NSEAWKYDLFLARNPVPVRCPVAGKFNFTQRG--EHPFRTRILGGVTLSPRPDIHC-KQNISDLSVCDTDQKELAVDENYCLSVDHLGRPVDIYSDPDYRMKCIGFWKENLKSYLITYDDLDP-LSKYRCWVYQRADLNRVLMSQAVGAFCKLEQDVTSWNHSEGAAVAIDAVEYERERDDCPMHFDDGLNPWKPSDASNIIFDWDFYRAGAATLKF 601
BLAST of Actin cytoplasmic type 5 vs. Ensembl Fly
Match: udt (gene:FBgn0039113 transcript:FBtr0084465) HSP 1 Score: 277.33 bits (708), Expect = 1.075e-83 Identity = 179/613 (29.20%), Postives = 293/613 (47.80%), Query Frame = 2 Query: 182 FSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXXXXMGFETGFVRSKSQQLDF--------NCKSIIEGIYQFNYK-LTKYSGICDRGSNLIKACQKQGSP-LRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTF 1990 FS E G T+T I + + S G C+ N + + ++ ++ +C+ C R I R+L V + ++ + V+ Q + NC+S +EG++ F Y+ +++G+CD+ I++CQ G+ L N F + + C + +G + C G W + + + + + +YRC + D G+S A C +L++ +P R++ P ++ +EPGC LP NF+G W + + +V I+ THI D+ +Y + +VCR+ + NR +MA +T C D+ CF F+PRHHNIIR+R G ++ F C W F N W Y+ F+ PVPV CP+ G++ F Q G E + T++ GG+T PR ++ C K+ SDL+ C + K+L +D C+ +D GRP+ Y D R+ C+G+W E+ KS+LITYD DP + +RCWVY+R +L+ MS++ + C Q S GA++ ++ + E E D CPM FDDG NP+ N+ + D ++ L F Sbjct: 40 FSWETGLPTLTVIDATSMSSR-----GYCI------NYMRHKGDEYSFVFKERSKDCYHCVRTIIRTLNVFE---KFEGPCVGIPAGQEPTVDYVCRGVKDDQQLITLFNENFVPINCRSSLEGVWHFTYQNRFRFTGVCDKPDARIQSCQTAGTQFLIQNQKFNVTYQQCEGMEGTFTG--------TVEFSCLGDWFVGKNHYFAVANTKESRKDEKYRCFLKNRDDDLYV----GVSITAECNTLKTPET-SPERLKLTP-----VKAEFVEPGCTLPQNFSGEWVNTANIDADVSISETHINETYYPDKARYRKTIYVCRERRGNRVMMARLTVDGCQKDYVCFDFMPRHHNIIRYRKGLAVIKDD--------------FSTVCSWVQFP-NSEAWKYDLFLARNPVPVRCPVAGKFNFTQRG--EHPFRTRILGGVTLSPRPDIHC-KQNISDLSVCDTDQKELAVDENYCLSVDHLGRPVDIYSDPDYRMKCIGFWKENLKSYLITYDDLDP-LSKYRCWVYQRADLNRVLMSQAVGAFCKLEQDVTSWNHSEGAAVAIDAVEYERERDDCPMHFDDGLNPWKPSDASNIIFDWDFYRAGAATLKF 601
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Match: A0A3Q0KIW4 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0 Identity = 336/616 (54.55%), Postives = 439/616 (71.27%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSI--ENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXX-----XXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYI-PYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITK-QSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANA 1954 +++ C I +V +FS+E G+ET T I L+ + G+C I ENT + VE DI V+Y N T +CFFCY FI RS V+QY ++CQ S+ +C SL + ETGFVRS+ DFNCKSIIEG+Y F+Y++ +G+C +LIKACQ+QGSPLRDN++ F CP D + W+CYGRW D IW AI +DTN+ +FRYRC+ TRIDQQ+ WG+S++++CK L + +APIR+E +PAFDP+ Q+ E++PGCKLPTNF+G WFYPSEY T V IN+THIY KR+ YD I+FVCRQ QE+RYLM +T GKC+ DF C F+PRHHNIIRFRMGRPF + R+R S +YM R++RE+CHW+SFTLNY++W YEYF+ DPP P+NCPIQG++ F Q GQ++E Y TK+PGGMTPRP ++VLC WES++ AC +PK L LDV++C RLDF+G+P+SEY++ DN +TCVGYWMEDTKSFL+TYD EDPV ++FRCW+Y+R+ Y MSR + + CSKIQTA+SS PE GASLLLELT++E +FD CPMS+DDG NPYANPA+ +VYA+ Sbjct: 17 ETEGTCEIPAKYVKTLFSIENGKETTTQILKSQLIQTLESLWGSCHMIVSENTNSDAVE---DIVVLYKNMTKDCFFCYDFIFRSPNVLQYRRSQCQRPEFGSNESTICGSLAASELETGFVRSREDYSDFNCKSIIEGVYAFDYRIVGSTGLCSSPFSLIKACQRQGSPLRDNSILEQTFGYCPNFQDQSILEDPNIVFGKANIWRCYGRWTDKSGTIWAAIAYDTNQLRFRYRCLTTRIDQQNPQDIYYWGMSTNSDCKVLYN-YNNAPIRLELRPAFDPESQLSELQPGCKLPTNFSGHWFYPSEYQTSVDINATHIYMKRKQANFLYDHIYFVCRQQQESRYLMTVITLGKCETDFMCMDFMPRHHNIIRFRMGRPFPLLHRERHSMGASYMQRLYREACHWSSFTLNYIEWTYEYFVQDPPTPINCPIQGKFKFIQRGQEQEKYITKIPGGMTPRPWVQVLCYNYWESNIEACLNDPKTLQLDVQKCWRLDFSGQPISEYNVVDNYMTCVGYWMEDTKSFLVTYDKEDPVSNNFRCWIYKRLSFRTYLMSRGRGNRCSKIQTAESSLPEEGASLLLELTEDEYQFDVCPMSWDDGRNPYANPAILDVYASG 628
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Match: G4VLR1 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_087870 PE=4 SV=1) HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0 Identity = 336/616 (54.55%), Postives = 439/616 (71.27%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSI--ENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXX-----XXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYI-PYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITK-QSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANA 1954 +++ C I +V +FS+E G+ET T I L+ + G+C I ENT + VE DI V+Y N T +CFFCY FI RS V+QY ++CQ S+ +C SL + ETGFVRS+ DFNCKSIIEG+Y F+Y++ +G+C +LIKACQ+QGSPLRDN++ F CP D + W+CYGRW D IW AI +DTN+ +FRYRC+ TRIDQQ+ WG+S++++CK L + +APIR+E +PAFDP+ Q+ E++PGCKLPTNF+G WFYPSEY T V IN+THIY KR+ YD I+FVCRQ QE+RYLM +T GKC+ DF C F+PRHHNIIRFRMGRPF + R+R S +YM R++RE+CHW+SFTLNY++W YEYF+ DPP P+NCPIQG++ F Q GQ++E Y TK+PGGMTPRP ++VLC WES++ AC +PK L LDV++C RLDF+G+P+SEY++ DN +TCVGYWMEDTKSFL+TYD EDPV ++FRCW+Y+R+ Y MSR + + CSKIQTA+SS PE GASLLLELT++E +FD CPMS+DDG NPYANPA+ +VYA+ Sbjct: 18 ETEGTCEIPAKYVKTLFSIENGKETTTQILKSQLIQTLESLWGSCHMIVSENTNSDAVE---DIVVLYKNMTKDCFFCYDFIFRSPNVLQYRRSQCQRPEFGSNESTICGSLAASELETGFVRSREDYSDFNCKSIIEGVYAFDYRIVGSTGLCSSPFSLIKACQRQGSPLRDNSILEQTFGYCPNFQDQSILEDPNIVFGKANIWRCYGRWTDKSGTIWAAIAYDTNQLRFRYRCLTTRIDQQNPQDIYYWGMSTNSDCKVLYN-YNNAPIRLELRPAFDPESQLSELQPGCKLPTNFSGHWFYPSEYQTSVDINATHIYMKRKQANFLYDHIYFVCRQQQESRYLMTVITLGKCETDFMCMDFMPRHHNIIRFRMGRPFPLLHRERHSMGASYMQRLYREACHWSSFTLNYIEWTYEYFVQDPPTPINCPIQGKFKFIQRGQEQEKYITKIPGGMTPRPWVQVLCYNYWESNIEACLNDPKTLQLDVQKCWRLDFSGQPISEYNVVDNYMTCVGYWMEDTKSFLVTYDKEDPVSNNFRCWIYKRLSFRTYLMSRGRGNRCSKIQTAESSLPEEGASLLLELTEDEYQFDVCPMSWDDGRNPYANPAILDVYASG 629
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Match: A0A0X3PZD8 (Uncharacterized protein (Fragment) OS=Schistocephalus solidus OX=70667 GN=TR149706 PE=4 SV=1) HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0 Identity = 328/613 (53.51%), Postives = 427/613 (69.66%), Query Frame = 2 Query: 149 CTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXX-----XXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFT-WKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQ---DITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADK 1960 C++ + +S+E G+ET T I + L D + DG+C I N T + ++Y NKTN+C+FCY I RS V+QY ++CQ +S + ETGFV ++ DFNCKSIIEG+Y F Y++ +G+C ++++KACQ+QGSPLRDN+V+ F CP + + T W+CY RWVD + +W A+E+DTN KF+YRC+ TRIDQQ DI + WG++ DA+CK+L+ APIR+ +PAFD Q+ EM+P CKLPTN +G WFYPSEY T VKINSTHIY +RR D +++I+FVCRQ Q +RYLMA VTKG+C++D CF +PRHHNI RFRMGRPF ++ R + + +YM R+F+E+CHW+SFTLNY++W YEYF+LDPPVP+NCPIQG++ F QTGQ+ E Y KMP GMTPRP L+VLC W+S++ AC E+PK L LDVE+C RLDF G P+SEY++ DN ++CVGYWMEDTKS+LITYD EDPV + FRCWVYRR+ L Y MSRS + C K+QTA+SS PE GASL LELT+NE EFD CPM+FDDG NPYANPAV NVYA + Sbjct: 38 CSVSRLYRKTFYSIENGRETTTRIMASELTQDIDRLDGSCYQILNITTMETAKKDSMKIVYKNKTNDCYFCYELISRSENVIQYRRSQCQPIQSGSSTSSICDLITGVELETGFVMARQDYSDFNCKSIIEGVYAFEYRIVGSTGMCRSPNSILKACQRQGSPLRDNSVYEQTFGYCPNFLEKSVLEEPNIVYGKATLWRCYARWVDDEGTVWAAVEYDTNMPKFKYRCLTTRIDQQNRQDIIQ--WGMTVDADCKNLKD-YFSAPIRLVLEPAFDTATQLIEMQPSCKLPTNISGDWFYPSEYQTSVKINSTHIYMRRRKDSYTFEDIYFVCRQQQLSRYLMAVVTKGQCEIDLMCFELMPRHHNIARFRMGRPFPLDPRTKAALGADYMLRMFKEACHWSSFTLNYIEWTYEYFVLDPPVPINCPIQGKFQFIQTGQEAEKYVFKMPRGMTPRPWLQVLCYDYWQSNMEACLEDPKILKLDVEQCWRLDFAGHPISEYNVPDNYISCVGYWMEDTKSYLITYDREDPVTNRFRCWVYRRLSLRTYAMSRSLGNQCGKMQTAESSLPEEGASLRLELTENEYEFDVCPMAFDDGKNPYANPAVLNVYAPGSR 647
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Match: A0A183K1H1 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS8834 PE=4 SV=1) HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0 Identity = 335/616 (54.38%), Postives = 438/616 (71.10%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSI--ENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXX-----XXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYI-PYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITK-QSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANA 1954 +++ C I +V +FS+E G+ET T I L+ + G+C I ENT + VE DI V+Y N T +CFFCY FI RS V+QY ++CQ S+ +C SL + ETGFVRS+ DFNCKSIIEG++ F+Y++ +G+C +LIKACQ+QGSPLRDN++ F CP D + W+CYGRW D IW AI +DTN+ +FRYRC+ TRIDQQ+ WG+S++++CK L + +APIR+E +PAFDP Q+ E++PGCKLPTNF+G WFYPSEY T V IN+THIY KR+ YD I+FVCRQ QE+RYLM +T GKC+ DF C F+PRHHNIIRFRMGRPF + R+R S +YM R++RE+CHW+SFTLNY++W YEYF+ DPP P+NCPIQG++ F Q GQ++E Y TK+PGGMTPRP ++VLC WES++ AC +PK L LDV++C RLDF+G+P+SEY++ DN +TCVGYWMEDTKSFL+TYD EDPV ++FRCW+Y+R+ Y MSR + + CSKIQTA+SS PE GASLLLELT++E +FD CPMS+DDG NPYANPA+ +VYA+ Sbjct: 18 ETEGTCEIPAKYVKTLFSIENGKETTTQILKSQLIQTLESLWGSCHMIVSENTNSDAVE---DIVVVYKNMTKDCFFCYDFIFRSPNVIQYRRSQCQRPEFGSNESTICGSLATSELETGFVRSREDYSDFNCKSIIEGVFAFDYRIVGSTGLCSSPFSLIKACQRQGSPLRDNSILEQTFGYCPNFQDQSILEDPNIVFGKANIWRCYGRWTDKSGTIWAAIAYDTNQLRFRYRCLTTRIDQQNPQDIYYWGMSTNSDCKVLYN-YNNAPIRLELRPAFDPTSQLSELQPGCKLPTNFSGHWFYPSEYQTSVDINATHIYMKRKQANFLYDHIYFVCRQQQESRYLMTVITLGKCETDFMCMDFMPRHHNIIRFRMGRPFPLLHRERHSMGASYMQRLYREACHWSSFTLNYIEWTYEYFVQDPPTPINCPIQGKFKFIQRGQQQEKYITKIPGGMTPRPWVQVLCYNYWESNIEACLNDPKTLQLDVQKCWRLDFSGQPISEYNVVDNYITCVGYWMEDTKSFLVTYDKEDPVSNNFRCWIYKRLSFRTYLMSRGRGNRCSKIQTAESSLPEEGASLLLELTEDEYQFDVCPMSWDDGRNPYANPAILDVYASG 629
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Match: A0A0R3SQX1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7505 PE=3 SV=1) HSP 1 Score: 686.411 bits (1770), Expect = 0.000e+0 Identity = 327/611 (53.52%), Postives = 429/611 (70.21%), Query Frame = 2 Query: 149 CTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXX-----XXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTI--NPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQ---DITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAEN-YMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYA 1948 C++ +V ++S+E G+ TIT IK+ L D + +G C I TT I VIY N+TN+C+FCY I RS V+QY ++CQ ++ + ETGF+ S+ Q DFNCKSIIEGIY F Y++ +G+C +N++KACQ+QGSPLRDN+V+ F CP +I Y + W+CY RWV +W A+E+DTN KF+YRC+ TRIDQQ DI + WG++ DA+CK+L++ APIR+ +PAFDP+ Q+ EM+P CKLPTN++G WFYPSEY T V INSTHIY +R+ D Y++I+FVCRQ Q +RYLMA VT+G+C++DF CF +PRHHNI RFRMGRPF + + S E+ YM R+++E+CHW+SFTLNY++W YEYF+LDPPVP+NCPIQG+Y F QTGQ+ E Y KMP GMTPRP L+VLC W++++ AC +PK L LDV++C RLDF GRP+SEYD+ DN + CVG+WMEDTKS+LITYD EDPV + FRCWVY+R+ L + MSRS + C K+QTA+SS PE GASL LELT++E EFD CPM++DDG NPY NPAV NVYA Sbjct: 23 CSLPSIYVKTLYSIENGKGTITTIKASELSQDIDRLNGTCYQILQTTTVEANKTDSINVIYKNRTNDCYFCYELIARSENVIQYRRSQCQPVLAGHRATEICDLITGVELETGFINSREQYSDFNCKSIIEGIYSFEYRIVGSTGVCRSPNNILKACQRQGSPLRDNSVYEQTFGFCPNFFETSVLQEPNIVYGKSNI-WRCYARWVADDGTVWAAVEYDTNMPKFKYRCLTTRIDQQNRQDIIQ--WGMTVDADCKNLKN-YFTAPIRLILEPAFDPETQLVEMQPTCKLPTNYSGNWFYPSEYQTSVHINSTHIYMRRKKDDYTYEDIYFVCRQQQLSRYLMAVVTRGQCEIDFMCFELIPRHHNIARFRMGRPFPLEPLVKSSLGESEYMLRMYKEACHWSSFTLNYIEWTYEYFVLDPPVPINCPIQGKYKFVQTGQEAEHYVFKMPNGMTPRPWLQVLCFSYWQTNIEACLNDPKILKLDVQKCWRLDFAGRPISEYDVTDNYIACVGFWMEDTKSYLITYDLEDPVSNRFRCWVYQRLSLRSFSMSRSLGNRCGKMQTAESSLPEEGASLRLELTEDEYEFDVCPMNYDDGRNPYVNPAVLNVYA 629
BLAST of Actin cytoplasmic type 5 vs. Planmine SMEST
Match: SMESG000080982.1 (SMESG000080982.1) HSP 1 Score: 1279.23 bits (3309), Expect = 0.000e+0 Identity = 625/627 (99.68%), Postives = 626/627 (99.84%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFGVLTWFFY 2014 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRL+VLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTF VLTWFFY Sbjct: 16 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLQVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFCVLTWFFY 642
BLAST of Actin cytoplasmic type 5 vs. Planmine SMEST
Match: SMESG000080982.1 (SMESG000080982.1) HSP 1 Score: 1174.07 bits (3036), Expect = 0.000e+0 Identity = 585/627 (93.30%), Postives = 587/627 (93.62%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVKINSTHIYYKRRIDQTKYDEIFFVCRQFQENRYLMATVTKGKCDLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFGVLTWFFY 2014 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVK FF+ DLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRL+VLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTF VLTWFFY Sbjct: 16 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTEVK--------------------FFILFS----------------DLDFTCFHFLPRHHNIIRFRMGRPFRMNERDRLSNAENYMNRVFRESCHWNSFTLNYVDWVYEYFILDPPVPVNCPIQGRYMFKQTGQKEELYYTKMPGGMTPRPRLQVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFCVLTWFFY 606
BLAST of Actin cytoplasmic type 5 vs. Planmine SMEST
Match: SMESG000080969.1 (SMESG000080969.1) HSP 1 Score: 599.356 bits (1544), Expect = 0.000e+0 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 2 Query: 134 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTXXXXXXXXXXXXXXXMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTE 1042 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTE Sbjct: 16 KSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVSDTKKFDGACVSIENTTNPLVESNTDIGVIYLNKTNNCFFCYRFIQRSLYVMQYSHTECQSSSENLCSSLNSMGFETGFVRSKSQQLDFNCKSIIEGIYQFNYKLTKYSGICDRGSNLIKACQKQGSPLRDNNVFYMKFDLCPTINPADSGGDIKYIPYDFTWKCYGRWVDPQKNIWGAIEFDTNEEKFRYRCIITRIDQQDITKQSWGISSDANCKSLESGIIDAPIRIETKPAFDPDIQIREMEPGCKLPTNFTGVWFYPSEYNTE 318 HSP 2 Score: 389.808 bits (1000), Expect = 7.146e-128 Identity = 184/193 (95.34%), Postives = 186/193 (96.37%), Query Frame = 2 Query: 1436 QKEELYYTKMPGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFGVLTWFFY 2014 +K+ K GGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFGVLTWFFY Sbjct: 336 KKKNCITQKCQGGMTPRPRLEVLCDKKWESDLAACYENPKQLNLDVERCMRLDFTGRPMSEYDIADNRLTCVGYWMEDTKSFLITYDPEDPVIHHFRCWVYRRIELSYYKMSRSQSSHCSKIQTADSSGPETGASLLLELTQNELEFDACPMSFDDGTNPYANPAVFNVYANADKHKYSQILLTFGVLTWFFY 528 HSP 3 Score: 63.1586 bits (152), Expect = 4.299e-10 Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 3 Query: 1383 QFLLIAQYKDGTCLSKRVKKKNCITQKCQG 1472 +FLLIAQYKDGTCLSKRVKKKNCITQKCQG Sbjct: 318 EFLLIAQYKDGTCLSKRVKKKNCITQKCQG 347 The following BLAST results are available for this feature:
BLAST of Actin cytoplasmic type 5 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Actin cytoplasmic type 5 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Actin cytoplasmic type 5 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Actin cytoplasmic type 5 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015473 ID=SMED30015473|Name=Actin cytoplasmic type 5|organism=Schmidtea mediterranea sexual|type=transcript|length=2100bpback to top protein sequence of SMED30015473-orf-1 >SMED30015473-orf-1 ID=SMED30015473-orf-1|Name=SMED30015473-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=643bp MFIYISIAYAIFFIAKSQPQCTIRPDHVMMIFSLEGGQETITDIKSQFLVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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