Replication factor C subunit 1

Overview
NameReplication factor C subunit 1
Smed IDSMED30015448
Length (bp)2943
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Replication factor C subunit 1 (SMED30015448) t-SNE clustered cells

Violin plots show distribution of expression levels for Replication factor C subunit 1 (SMED30015448) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Replication factor C subunit 1 (SMED30015448) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Replication factor C subunit 1 (SMED30015448) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30015448

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30015448h1SMcG0004266 SmedASXL_016885SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969])

HSP 1 Score: 502.286 bits (1292), Expect = 6.804e-160
Identity = 305/743 (41.05%), Postives = 441/743 (59.35%), Query Frame = 3
Query:  507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWAN-------NYKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            KTP  TK +  +    SP  S  K+     Y ++LNR GP ALGSKEIPKG+  CL G+ FV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK I+ED L  +IR    K        KSK E  VE   K   KESK+E         K+ I P K+            +  + K  K   ++ +K    K+ ++         + +   S+  K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW         + K G F    +   FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS +  I++ + +  S           S   K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++ ++ K+ K+GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENY+ V P     ++ K + L+S AADSI   D+V +++R+  NW LLP Q +YASV+PGE M G +T    FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY  +L + +++PL       ++  + +++   L++ED + ++E +SW     P S +  ++K A TRAYNK     PYS+ A K
Sbjct:  352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1080          
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969])

HSP 1 Score: 501.901 bits (1291), Expect = 9.858e-160
Identity = 305/744 (40.99%), Postives = 441/744 (59.27%), Query Frame = 3
Query:  507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN--------YKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            KTP  TK +  +    SP  S  K+     Y ++LNR GP ALGSKEIPKG+  CL G+ FV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK I+ED L  +IR    K        KSK E  VE   K   KESK+E         K+ I P K+            +  + K  K   ++ +K    K+ ++         + +   S+  K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +         K G F    +   FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS +  I++ + +  S           S   K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++ ++ K+ K+GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENY+ V P     ++ K + L+S AADSI   D+V +++R+  NW LLP Q +YASV+PGE M G +T    FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY  +L + +++PL       ++  + +++   L++ED + ++E +SW     P S +  ++K A TRAYNK     PYS+ A K
Sbjct:  352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1081          
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969])

HSP 1 Score: 137.887 bits (346), Expect = 1.714e-36
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE----KFNKVKAKESKIEHKQPIKPI 1004
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+ FV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK I+ED L  +IR    K        KSK E  VE     ++ V+   S    K  +K I
Sbjct:    4 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEELGYSYVELNASDTRSKSSLKAI 151          
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: CHTF18 (chromosome transmission fidelity factor 18 [Source:HGNC Symbol;Acc:HGNC:18435])

HSP 1 Score: 67.0106 bits (162), Expect = 1.641e-10
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K ALL GPPG+GKTT AHV+A+  GY+V+E NAS  RS       I      +S   +     CLV+DEIDG
Sbjct:  368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDG 439          
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: CHTF18 (chromosome transmission fidelity factor 18 [Source:HGNC Symbol;Acc:HGNC:18435])

HSP 1 Score: 67.0106 bits (162), Expect = 1.669e-10
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K ALL GPPG+GKTT AHV+A+  GY+V+E NAS  RS       I      +S   +     CLV+DEIDG
Sbjct:  368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDG 439          
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: rfc-1 (Replication factor C subunit 1 [Source:UniProtKB/TrEMBL;Acc:Q18841])

HSP 1 Score: 280.026 bits (715), Expect = 1.743e-80
Identity = 183/502 (36.45%), Postives = 281/502 (55.98%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWA-NNYKLGFK----------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISL------------TRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGD---IETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567
            +VDK+KP+ M ++VGQ GD+SP  KL  W+ +WA +N   G K             +   FK ALLSG PG+GKTT A++  ++LG  ++E NAS  RSK  +   I               + C     ++++ + L+MDE+DGMSGNEDR G++ELI IIK+SKIPIICICNDRQ  K++T+ANY  DLRF K  +E + + + +   +EK+ +  + L+EI+  S  D+RQ  +N+Q+ S            A+ + K+  +  F   +++   D   TL +K ++FF DY +  LFVQ+NYL +     +++  + +  I  AAD I++ D++  ++R   +W LL  Q M ++ +P     G+L   I FPSWLGK S   K KR+L  L  H       G     S + DY+ +L  KI KPL E +   I   ++ + + +L+++D + L E  +W    DP S + S++K +LTR  NK+   LPYS+ +  KG
Sbjct:  280 WVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKAALLSGSPGVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFGAKKCAPQD-NQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQMRSKG--------VGAKINQKDMAVDAFSAARRLL--DSRTTLMEKQEMFFTDYGIMPLFVQDNYLNMK--NEKHSPIQAIRGIRKAADFISLGDLIDRQIRGGGSWKLLNEQSMISAALPAIATGGHLKAMIQFPSWLGKNSTAGKRKRLLQQLVQHTHLKVSAGT---HSFATDYAPMLRQKITKPLLEHEADGIPDVISTMTEYDLIKDDTEALTEIVAWPGKIDPASKILSKVKASLTRTLNKTGRMLPYSMDSVSKG 765          
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: rfc-2 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:O44175])

HSP 1 Score: 59.6918 bits (143), Expect = 4.775e-9
Identity = 61/228 (26.75%), Postives = 98/228 (42.98%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSK----ELKY-CLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKL-QTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++P+ +  IVG +                  N     K IG   +    +LSGPPG GKTT+   +A+EL        V+E NAS  R      GI  +    K+   +K    E ++  +++DE D M+     G    L   ++             QS K+ + I +    LR+ KL+  Q+   VK     EK++  D  L  I+  +  D+RQ  +N+Q
Sbjct:   12 WVEKYRPKVLADIVGNE------------------NIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEAVLELNASDER------GIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTD----GAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQ 211          
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350])

HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K  LLSGP G+GK+T A +VA++ GY+ I+ NAS  R+ +     + G +  +R   +D    +   CL++DEIDG
Sbjct:  331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402          
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350])

HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K  LLSGP G+GK+T A +VA++ GY+ I+ NAS  R+ +     + G +  +R   +D    +   CL++DEIDG
Sbjct:  331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402          
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350])

HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K  LLSGP G+GK+T A +VA++ GY+ I+ NAS  R+ +     + G +  +R   +D    +   CL++DEIDG
Sbjct:  331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402          
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: Gnf1 (gene:FBgn0004913 transcript:FBtr0078837)

HSP 1 Score: 458.373 bits (1178), Expect = 2.896e-145
Identity = 292/729 (40.05%), Postives = 418/729 (57.34%), Query Frame = 3
Query:  516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555
            T E +HE       K A+   Y  + NRS  +  GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V   +  K  YL++G E G  K+  A++LN   ++ED LF +IR  S                        K + T+     KKE E  K      + +   + K EH  P    KE+K  +  +   +  +  +P++ K+H        +       + +VDK KP ++++IVGQ G  S   KL  WLS W  N+    K        K  +   +K ALLSGPPGIGKTTTA +V KELG+  +E+NAS TRSK  +   +S     KS          +   K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR   K++++ NY  DLRF++  LEQ+   + S  FKEK+ +    + EI+ A+N D+RQ  ++I L SA E      KS  Q + K+ K+GP++VV+KVFT D+ K  +   KSDLFF DY+L  LFVQ+NYL+V P G + +V   +  ++  AD++++ D+V  ++R  + W LLP Q  ++SV+PGE+M G+ T +INFP WLGK SK  K  R+   L  H R  T G   +  S+ +DY+  LL+ I++PL    +EG +   L+++   +LLRED+D LVE TSW     PL +V  ++K ALTR+YNK      YS  A
Sbjct:  197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 906          
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: Gnf1 (gene:FBgn0004913 transcript:FBtr0100159)

HSP 1 Score: 445.277 bits (1144), Expect = 4.050e-140
Identity = 293/751 (39.01%), Postives = 420/751 (55.93%), Query Frame = 3
Query:  516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRS---------PAK-------------KLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555
            T E +HE       K A+   Y  + NRS  +  GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V   +  K  YL++G E G  K+  A++LN   ++ED LF +IR  S                        K + T+     KKE E  K      + +   + K EH  P    KE+K  +  +   +  +  +P++ K+H        +       + +VDK KP ++++IVGQ G  S          AK             +L  WLS W  N+    K        K  +   +K ALLSGPPGIGKTTTA +V KELG+  +E+NAS TRSK  +   +S     KS          +   K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR   K++++ NY  DLRF++  LEQ+   + S  FKEK+ +    + EI+ A+N D+RQ  ++I L SA E      KS  Q + K+ K+GP++VV+KVFT D+ K  +   KSDLFF DY+L  LFVQ+NYL+V P G + +V   +  ++  AD++++ D+V  ++R  + W LLP Q  ++SV+PGE+M G+ T +INFP WLGK SK  K  R+   L  H R  T G   +  S+ +DY+  LL+ I++PL    +EG +   L+++   +LLRED+D LVE TSW     PL +V  ++K ALTR+YNK      YS  A
Sbjct:  197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQERVKVLHYFNFPRLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 928          
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: cutlet (gene:FBgn0015376 transcript:FBtr0077541)

HSP 1 Score: 60.077 bits (144), Expect = 1.088e-8
Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K ALL GPPG+GKTT AH +A+  GY V E NAS  RS       +       S     +   C+V+DEIDG
Sbjct:  421 KVALLCGPPGLGKTTLAHTIARHAGYNVREINASDDRSPEAFKLALENGTQMSSVLNEDKRPNCIVLDEIDG 492          
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: RfC4 (gene:FBgn0260985 transcript:FBtr0073264)

HSP 1 Score: 55.8398 bits (133), Expect = 1.022e-7
Identity = 63/247 (25.51%), Postives = 109/247 (44.13%), Query Frame = 3
Query: 1113 SNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GY--TVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKL-QTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSE 1835
            ++  +S + +++K++P   ++IVG +       +LS+            F   G A +    +++GPPG+GKTTT   +A+ L    Y   V+E NAS  R    +   I +    K        K  +++DE D M+     G    L   ++              S K+ + I +    LRF KL+  Q+ A +      EK++  +D L  IV  +  D+RQ  +N+Q   +T    GD+ +E
Sbjct:    9 ADDKRSHLPWIEKYRPVKFKEIVGNE---DTVARLSV------------FATQGNAPNI---IIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKI-VILDEADSMT----EGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ---STAQGFGDITAE 229          
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 511.916 bits (1317), Expect = 8.179e-164
Identity = 320/768 (41.67%), Postives = 462/768 (60.16%), Query Frame = 3
Query:  495 NESLKTPTKETKHEANVTSP----PKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK----PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTN--KKHLS---GKPIVTISNSTK----STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG-------FKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFT---HDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLR----EGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNI 2669
            +ES+ + T  TK E   TSP     K AN   Y ++LNR GP ALGSK+IP+G   CL G  FV+TGVLES+ERD+A+SLIER+GG+VT  +S KTTYL++G + G SK +KA+   TK INEDEL  +IR    K     I+     KS K    +   KV +   K   + P    + S     K    S++     + +  KK LS    K    +S+S      S++L+VDK++P++++ ++GQQGD+S A KL  WL +W  ++          F K G  D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +I+ + +  S          +   K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR  +K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  ALNE+++ASN D+RQV HN+ +WSA +  M     K++A  + K+ K+GPFDV +KVF         +L  KSDLFF DY+L  LFVQENYL V P     N+   + L+S  ADSI   D+V  ++R+   W LLP Q +YASV+PGE M G ++   NFPSWLGK+S   K+ RI+  L  H+   T   +S+  ++++DY   L + +LKPL+    EG    ++ +++  ++++ED+D ++E ++W    DP S + S++K A TRAYNK +   PYS+   KK    + +  L      E + + EE+DDG+  D  I
Sbjct:  348 SESVPSKTSPTKPEN--TSPDDLEKKRANSSAYRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIRTKPGKKSKYEIAAEAENKSSKTRTPDSRGKVASSAKKATPQGPSPNKRSSSGGKSKPGSASKSGARGASCSEVKKSLSFDQTKTASPVSHSAPENDGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQSWHKHHSGNAKAPAPKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFALGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKSHLVLLSKTADSICDGDLVDRQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFSSSGKHSRIIQELASHMSLKT---LSSKEAVNLDYLPYLRSAVLKPLQSLGSEG-ANQSVKLMDDYDIIKEDVDNMMEISTWDGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELLGELDNESQVQEEEEDDGLGADAMI 1109          
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: chtf18 (CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-508])

HSP 1 Score: 76.6406 bits (187), Expect = 1.240e-13
Identity = 59/163 (36.20%), Postives = 75/163 (46.01%), Query Frame = 3
Query: 1128 STVLFVDKFKPQTMRQIVGQQ-GDRSPAKKLSLW------------------LSNWAN----NYKLGFK-------KIGEAD-------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            S+ L+VD+F PQ    ++     +R   K L LW                   SN+ N    N    FK       +I EA+        FK ALLSGPPG+GKTT AH++AK  GY V+E NAS  RS       I      KS   + E   CL++DEIDG
Sbjct:  276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQNQNQAQRFKTKSQMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLIIDEIDG 438          
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: chtf18 (CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-508])

HSP 1 Score: 76.6406 bits (187), Expect = 1.261e-13
Identity = 59/163 (36.20%), Postives = 75/163 (46.01%), Query Frame = 3
Query: 1128 STVLFVDKFKPQTMRQIVGQQ-GDRSPAKKLSLW------------------LSNWAN----NYKLGFK-------KIGEAD-------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            S+ L+VD+F PQ    ++     +R   K L LW                   SN+ N    N    FK       +I EA+        FK ALLSGPPG+GKTT AH++AK  GY V+E NAS  RS       I      KS   + E   CL++DEIDG
Sbjct:  276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQNQNQAQRFKTKSQMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLIIDEIDG 438          
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: atad5a (ATPase family AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20])

HSP 1 Score: 57.7658 bits (138), Expect = 8.653e-8
Identity = 38/133 (28.57%), Postives = 63/133 (47.37%), Query Frame = 3
Query: 1095 KPIVTISNST----KSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW--------------------ANNYKLGFKKIGEADHF--KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM 1415
            +P V+ + ST    K  VL+ +K++PQ   +I+G   +    ++L  WL  W                    +N+  L  + + E + F     L++GP G+GKT   +  A+ELG+ V E N+S  RS  Q+
Sbjct:  974 EPAVSRNTSTEDGIKEDVLWTEKYQPQHSSEIIG---NMESVRRLHSWLKEWKLRADREERRKQQEKKHEEDSNDSWLMSEDLDETEDFLCNTLLITGPTGVGKTAAVYACAQELGFKVFEVNSSSQRSGRQI 1103          
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29])

HSP 1 Score: 52.373 bits (124), Expect = 2.059e-6
Identity = 55/228 (24.12%), Postives = 102/228 (44.74%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++P  + +IVG +   S   +L +            F + G   +    +++GPPG GKTT+   +A+ L        V+E NAS      + R+K +M     +T         K     +++DE D M+    +     +    K ++  + C  +D+    ++ I +    LR+ KL  EQ+   +   + KE + V +D L  I+  +  D+RQ  +N+Q
Sbjct:   68 WVEKYRPLKLNEIVGNEETVS---RLEV------------FAREGNVPNI---IIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK---IIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 267          
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013])

HSP 1 Score: 488.804 bits (1257), Expect = 3.070e-155
Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3
Query:  447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            SP K QS   K+   P ++  +P    K         K  N K Y  FLNR GP ALGSKEIP G+  C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT  +S KT Y+I+G + G SK +KA+   TK ++ED L  +IR    K                   E    KKE   +K    + KE     K+P  P K   TP EK E   +  L +    K         +P  T  +    ++L+VDK+KP +++QI+GQQG++S A KL  WL+ W  N+            K G K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M  +++ + +  S        C S   K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR   K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +   + KS A  + K+ K+GPFDVV+KVF+  +     TL  KSDLFF DY+L  LFVQENY+ V P     N+ K + L+S AADSI   D+V   +R+   W LLP Q +YASV+PGE M G +    NFPSWLGKYS   K  RI   L +H  LR  T+ G     +L++DY   + + +++PL +     +   ++ ++   L++ED D ++E + W       S +  ++K A TR YNK     PYS+   K
Sbjct:  305 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQ--TSKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1033          
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013])

HSP 1 Score: 488.034 bits (1255), Expect = 8.090e-155
Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3
Query:  447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            SP K QS   K+   P ++  +P    K         K  N K Y  FLNR GP ALGSKEIP G+  C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT  +S KT Y+I+G + G SK +KA+   TK ++ED L  +IR    K                   E    KKE   +K    + KE     K+P  P K   TP EK E   +  L +    K         +P  T  +    ++L+VDK+KP +++QI+GQQG++S A KL  WL+ W  N+            K G K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M  +++ + +  S        C S   K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR   K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +   + KS A  + K+ K+GPFDVV+KVF+  +     TL  KSDLFF DY+L  LFVQENY+ V P     N+ K + L+S AADSI   D+V   +R+   W LLP Q +YASV+PGE M G +    NFPSWLGKYS   K  RI   L +H  LR  T+ G     +L++DY   + + +++PL +     +   ++ ++   L++ED D ++E + W       S +  ++K A TR YNK     PYS+   K
Sbjct:  314 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQT--SKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1042          
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013])

HSP 1 Score: 488.419 bits (1256), Expect = 9.889e-155
Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3
Query:  447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            SP K QS   K+   P ++  +P    K         K  N K Y  FLNR GP ALGSKEIP G+  C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT  +S KT Y+I+G + G SK +KA+   TK ++ED L  +IR    K                   E    KKE   +K    + KE     K+P  P K   TP EK E   +  L +    K         +P  T  +    ++L+VDK+KP +++QI+GQQG++S A KL  WL+ W  N+            K G K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M  +++ + +  S        C S   K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR   K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +   + KS A  + K+ K+GPFDVV+KVF+  +     TL  KSDLFF DY+L  LFVQENY+ V P     N+ K + L+S AADSI   D+V   +R+   W LLP Q +YASV+PGE M G +    NFPSWLGKYS   K  RI   L +H  LR  T+ G     +L++DY   + + +++PL +     +   ++ ++   L++ED D ++E + W       S +  ++K A TR YNK     PYS+   K
Sbjct:  338 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQ--TSKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1066          
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013])

HSP 1 Score: 432.565 bits (1111), Expect = 3.674e-135
Identity = 286/742 (38.54%), Postives = 409/742 (55.12%), Query Frame = 3
Query:  447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            SP K QS   K+   P ++  +P    K         K  N K Y  FLNR GP ALGSKEIP G+  C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT  +S KT Y+I+G + G SK +KA+   TK ++ED L  +IR    K        +  EP+ +KK    EK  +   K S         P K   TP EK E   +  L +    K         +P  T  +    ++L+VDK+KP +++QI+GQQG++S A KL  WL+ W  N+            K G K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M  +++ + +  S        C S   K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR   K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +   + KS A  + K+ K+GPFDVV+KVF+  +     TL  KSDLFF DY+L  LFVQENY+ V P     N+ K + L+S AADSI   D+V   +R+   W LLP Q +Y                                  + S   +     T    +N  +L++DY   + + +++PL +     +   ++ ++   L++ED D ++E + W       S +  ++K A TR YNK     PYS+   K
Sbjct:  238 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEEPL-TKKTVTPEKKEQTSKKPS---------PAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQVLY---------------------------------ELFSCFLIFFIPRTR---TNKGALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 918          
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013])

HSP 1 Score: 427.557 bits (1098), Expect = 3.143e-133
Identity = 281/736 (38.18%), Postives = 410/736 (55.71%), Query Frame = 3
Query:  447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            SP K QS   K+   P ++  +P    K         K  N K Y  FLNR GP ALGSKEIP G+  C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT  +S KT Y+I+G + G SK +KA+   TK ++ED L  +IR    K    +    ++ +    K  K   K+  +  K+ + P K+ +T     +KPS   L +    K         +P  T  +    ++L+VDK+KP +++QI+GQQG++S A KL  WL+ W  N+            K G K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M  +++ + +  S        C S   K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR   K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +   + KS A  + K+ K+GPFDVV+KVF+  +     TL  KSDLFF DY+L  LFVQENY+ V P     N+ K + L+S AADSI   D+V   +R+   W LLP Q +                                 K + S   +     T    +N  +L++DY   + + +++PL +     +   ++ ++   L++ED D ++E + W       S +  ++K A TR YNK     PYS+   K
Sbjct:  242 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLT-KKTVTPEKKEQTS----KKPSPTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQVL---------------------------------KELFSCFLIFFIPRTR---TNKGALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 922          
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891])

HSP 1 Score: 494.967 bits (1273), Expect = 1.791e-157
Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+TFV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK ++ED L  +IR    K        +SK E   E   ++K ++SK+E         K+ I P K+     +         P + +  + +T  + L  K      +S K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +      +   F K+   D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +++ + +  S           S   ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+ +A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++Q++ K+ ++GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENYL V P     ++ K + L+S AADSI   D+V  ++R+  NW LLP Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++  ++    ++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:  369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072          
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891])

HSP 1 Score: 494.967 bits (1273), Expect = 1.863e-157
Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+TFV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK ++ED L  +IR    K        +SK E   E   ++K ++SK+E         K+ I P K+     +         P + +  + +T  + L  K      +S K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +      +   F K+   D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +++ + +  S           S   ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+ +A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++Q++ K+ ++GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENYL V P     ++ K + L+S AADSI   D+V  ++R+  NW LLP Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++  ++    ++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:  369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072          
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891])

HSP 1 Score: 493.812 bits (1270), Expect = 4.892e-157
Identity = 293/718 (40.81%), Postives = 434/718 (60.45%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW----------ANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+TFV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK ++ED L  +IR    K        +SK E   E   ++K ++SK+E         K+ I P K+     +         P + +  + +T  + L  K      +S K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW          A   KL  K  G +  FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +++ + +  S           S   ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+ +A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++Q++ K+ ++GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENYL V P     ++ K + L+S AADSI   D+V  ++R+  NW LLP Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++  ++    ++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:  369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKLASKDDGSS--FKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1071          
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891])

HSP 1 Score: 493.426 bits (1269), Expect = 1.080e-156
Identity = 291/716 (40.64%), Postives = 433/716 (60.47%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEAD---HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+TFV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK ++ED L  +IR    K        +SK E   E   ++K ++SK+E         K+ I P K+     +         P + +  + +T  + L  K      +S K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +         F K+   D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +++ + +  S           S   ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+ +A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++Q++ K+ ++GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENYL V P     ++ K + L+S AADSI   D+V  ++R+  NW LLP Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++  ++    ++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:  383 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1085          
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891])

HSP 1 Score: 94.7449 bits (234), Expect = 1.990e-21
Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 3
Query: 2115 LLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
             L  Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++       L++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:    2 FLSSQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 157          
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35251|RFC1_HUMAN (Replication factor C subunit 1 OS=Homo sapiens OX=9606 GN=RFC1 PE=1 SV=4)

HSP 1 Score: 501.901 bits (1291), Expect = 4.734e-159
Identity = 305/744 (40.99%), Postives = 441/744 (59.27%), Query Frame = 3
Query:  507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN--------YKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561
            KTP  TK +  +    SP  S  K+     Y ++LNR GP ALGSKEIPKG+  CL G+ FV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK I+ED L  +IR    K        KSK E  VE   K   KESK+E         K+ I P K+            +  + K  K   ++ +K    K+ ++         + +   S+  K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +         K G F    +   FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS +  I++ + +  S           S   K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+  A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++ ++ K+ K+GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENY+ V P     ++ K + L+S AADSI   D+V +++R+  NW LLP Q +YASV+PGE M G +T    FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY  +L + +++PL       ++  + +++   L++ED + ++E +SW     P S +  ++K A TRAYNK     PYS+ A K
Sbjct:  352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1081          
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35601|RFC1_MOUSE (Replication factor C subunit 1 OS=Mus musculus OX=10090 GN=Rfc1 PE=1 SV=2)

HSP 1 Score: 494.967 bits (1273), Expect = 1.418e-156
Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3
Query:  549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEAD---HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582
            S  K  N + Y ++LNR GP ALGSKEIPKG+  CL G+TFV+TGVLESIERD+A+SLIER+GG+VT  +S KT YL++G + G+SK  KA  L TK ++ED L  +IR    K        +SK E   E   ++K ++SK+E         K+ I P K+     +         P + +  + +T  + L  K      +S K   +L+VDK+KP +++ I+GQQGD+S A KL  WL NW  +      +   F K+   D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +++ + +  S           S   ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR   K++++ +Y  DLRF++  +EQ+ +A+ S  FKE + +P  A+NEI++ +N D+RQV HN+ +W A    +     K+++Q++ K+ ++GPFDV +KVF   +     +L  KSDLFF DY++  LFVQENYL V P     ++ K + L+S AADSI   D+V  ++R+  NW LLP Q +YASV+PGE M G +T   +FPSWLGK+S   K+ RI+  L LH+   T+   S+  +++MDY   + + +++PL    +E   +++  ++    ++ED + ++E +SW       S +  ++K A TRAYNK     PYS+   K    ++G
Sbjct:  369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072          
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35600|RFC1_DROME (Replication factor C subunit 1 OS=Drosophila melanogaster OX=7227 GN=Gnf1 PE=1 SV=2)

HSP 1 Score: 458.373 bits (1178), Expect = 2.903e-144
Identity = 292/729 (40.05%), Postives = 418/729 (57.34%), Query Frame = 3
Query:  516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555
            T E +HE       K A+   Y  + NRS  +  GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V   +  K  YL++G E G  K+  A++LN   ++ED LF +IR  S                        K + T+     KKE E  K      + +   + K EH  P    KE+K  +  +   +  +  +P++ K+H        +       + +VDK KP ++++IVGQ G  S   KL  WLS W  N+    K        K  +   +K ALLSGPPGIGKTTTA +V KELG+  +E+NAS TRSK  +   +S     KS          +   K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR   K++++ NY  DLRF++  LEQ+   + S  FKEK+ +    + EI+ A+N D+RQ  ++I L SA E      KS  Q + K+ K+GP++VV+KVFT D+ K  +   KSDLFF DY+L  LFVQ+NYL+V P G + +V   +  ++  AD++++ D+V  ++R  + W LLP Q  ++SV+PGE+M G+ T +INFP WLGK SK  K  R+   L  H R  T G   +  S+ +DY+  LL+ I++PL    +EG +   L+++   +LLRED+D LVE TSW     PL +V  ++K ALTR+YNK      YS  A
Sbjct:  197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 906          
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|Q9C587|RFC1_ARATH (Replication factor C subunit 1 OS=Arabidopsis thaliana OX=3702 GN=RFC1 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.006e-87
Identity = 244/710 (34.37%), Postives = 371/710 (52.25%), Query Frame = 3
Query:  579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVL-FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ---MPGIISLTRDCKSDC-----------WSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLW--SATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNL-------TDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSN----------FKLPYSIVAFKKGIAA 2576
            +  F  R  P   G KE+P+G+P CL+G+TFV++G L+S+ER++A+ LI+RHGGR+T ++S KTTYL+   + G  K +KA++L TK + ED LF +IR  SSKP+  + P +S K TE     K+ A            P K S    E   KP    L K +  K      P     N    T L + +K++P+   +IVG Q   S   +L  WLS+W + +     K   KK+ +A   K  LLSG PGIGKTT+A +V++ LG+  +E NAS +R K+      GI     +   +             SK  K  L+MDE+DGMS   DRGG+ +LI+ IK SKIPIICICNDR S+KL+++ NY L L +RK T +QM   +      E + + + AL E+    N D+R   + +Q    S + +   D++     S K+  I PF  V K+F ++  K  + ++ DL   D +L  L +QENYL   P G   +  K M+L++ AA+SIA  DI+  ++R    W L     + +S++P   +HG+         +   F  WLGK S   KN+R++  L +H+  S         +L +DY  +LL+++  PL    ++  +   ++ +N  ++ +ED D ++E   +    +P+  V   +K ALT+ YN+ N           +LP    A KK IAA
Sbjct:  182 FMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIR--SSKPVKKSLPERSNKGTE-----KICA------------PPKTSPQKEETRGKP----LAKSSPKK-----VPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQ---SLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAG-DRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPSG--KDEAKRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQGERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGR-ETLRVDYLPLLLSRLTSPLQTLPKDEAVSEVVDFMNSYSISQEDFDTILELGKFKGRENPMEGVPPPVKAALTKKYNEMNKTRMVRVADMVQLPGVKKAPKKRIAA 856          
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|Q2R2B4|RFC1_ORYSJ (Replication factor C subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC1 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 6.714e-84
Identity = 229/685 (33.43%), Postives = 352/685 (51.39%), Query Frame = 3
Query:  579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIE----KPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM---PGIISLTRDCKSDCWS-----------KELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPF--GCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNL-------TDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAY 2516
            +  F  R  P   G KE+P+G+P CL+G+TFV++G L+S+ER++A  LI+R+GGRVT ++S KT YL+   + G  K  KA++L    + ED LF MIR   SKP                K    K +  K   KQ   P+K S   VE+ +       +NI  K       +  + +  +    + ++ + +K++P+    IVG Q   S  K+L  WL +W + +     K   KK  ++   K  LLSGPPGIGKTTTA VV++ LG   IE NAS +R K+      G+   T +   +  S           K  K  LVMDE+DGMS   DRGG+ +LI+ IK SKIPIICICNDR S+KL+++ NY L L FRK T +QM   +     KE +   ++A+ E+    + D+R   +++Q  S ++  +   D++     S K+  I PF  V K+F  +  +  + ++ DL   D +L  L +QENY+   P   G  ++  K M  ++ AA+SIA +DIV  ++R    W L     + +S++P   MHGN         +   F  WLGKYS  NKN R+L     H+  S    +   S      + +LL ++  PL    ++  ++  +  ++  +L +ED D +VE + +    +P+  +   +K ALT+AY
Sbjct:  237 FMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRK--SKPA---------------KATVAKHQSDKNSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVD---RGSLQWTEKYRPKVPNDIVGNQ---SMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAG-DRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLT-LLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAY 896          
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: R7VAU2 (BRCT domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_175237 PE=4 SV=1)

HSP 1 Score: 523.087 bits (1346), Expect = 1.133e-169
Identity = 295/690 (42.75%), Postives = 432/690 (62.61%), Query Frame = 3
Query:  543 VTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG----FKKIGE-ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIIS--LTRDCKSDCWSKEL------KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPS---SLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546
             T    SA K  Y ++L+R GP ALGSKEIP+G+  CL G+TFV+TGVLES+ER ++QSLIER+GG+VT +LS +T+Y+++G + GESK+ KA +L TKQ++ED L  +IR    K         SK E E  K ++ K   +K +    +  I +SK    K           P   K    G         +  ++++VDK+KPQT++QI+GQ GD+S A+KL  WL NW  N   G    F +  +    FK ALLSGPPG+GKTTTA +V KE G++ +E NAS TRSK ++   +S  L      D +  ++      ++CLVMDE+DGM+GNEDRGG+ ELI +IK SKIP+IC+CNDR  +K++++AN+  DLRF++  +EQ+ AA+ S  FKE + +   AL E+++A+N D+RQ+ HN+ +W++T+  +     KS+A K+ K+  +GPFDV ++VF   +  ++  K+DLFFQDY+ G LFVQENY    PF  R ++   M+L+S AADSIA  D+V  ++R+T NWGLLP Q ++++V+PGE M G++   I FP WLGK S +NKN R L  L       TH G+ NP+    ++MDY  +L   + +PL     EG I   + ++++ +L RED D L+E  +W +  + +++V S++K A TR YNKS    PY+
Sbjct:    2 ATDQASSAKKGAYRSYLSREGPRALGSKEIPQGAENCLEGLTFVITGVLESMERSESQSLIERYGGKVTGSLSKRTSYVVVGRDAGESKMAKANQLGTKQLDEDGLLDLIRKLPGKT--------SKYEIEAAKQSQSKPSTAKFKSSPSLAKISQSKMSSAK-----------PAAKKATDEG---------SSQSLMWVDKYKPQTLKQIIGQTGDKSNARKLMNWLQNWHRNISSGKKPAFNRFSDDGSGFKAALLSGPPGVGKTTTATLVCKEAGFSFVELNASDTRSKRKLKDEVSESLNNHTLVDFFGGQVTPSEGQRHCLVMDEVDGMAGNEDRGGVAELIQLIKNSKIPVICMCNDRNHQKIRSLANHCFDLRFQRPRVEQIKAAMMSVAFKEGLKISPPALQEVIVAANQDVRQIMHNLSMWTSTDRNLSYDQAKSDANKAKKDAHLGPFDVCRQVFAGGERMSVIDKTDLFFQDYSFGPLFVQENYPSCTPFAARGDMRMQMKLLSQAADSIAQGDLVDRQIRSTQNWGLLPTQAIFSTVLPGEAMKGSIGQMIQFPQWLGKNSTRNKNDRTLQEL------RTHMGLKNPADKHEINMDYLPLLRKALTQPLATRGAEG-IGEIIQVMDEYSLTREDFDSLLEVATWPNSKNCMANVDSKVKAAFTRTYNKSVHLTPYA 656          
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A2P8ZJY6 (Replication factor C subunit 1 OS=Blattella germanica OX=6973 GN=Gnf1 PE=3 SV=1)

HSP 1 Score: 533.102 bits (1372), Expect = 1.024e-168
Identity = 322/747 (43.11%), Postives = 453/747 (60.64%), Query Frame = 3
Query:  579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPI-------------STNEPIK-------SKKETEVEKFNKVKAKESKIEHKQPIKPIKES----KTPVEKIEKPSENI-LYKP-----------------------------TTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGE---------ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSK-------SQMPGIISLTRDCKSDCWSKEL-KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSAT--EMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLT--QKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL-REG--DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGE 2585
            Y  +L+R GP   G KEIP+G P CLSG  FV+TGVL++I+RD A S+I+++GG+VT +LS  T+Y+++G EPG SKI+KA KL TKQ+ ED L  ++RNS S P              ST E  K       SKKE+ V+  +K + K SK E K P + IK S    KTP ++++ P + + + KP                             T+  K++         N +K+  L+VDK+KP +++QI+GQQGDRS  KKL  WL NW +N+  G KK+              FK ALLSGPPG+GKTTTAH+V KELG+ V+E+NAS TRSK       S++    SL+   +    +K   K+ L+MDE+DGM+GNEDRGG+ ELI +IK S+IPIIC+CNDR   K++++ NY  DL+F K  +EQ+  A+ S  FKE I +  +ALN+I+  SN D+RQV H++ +WS    ++ +  +K E++K+ K  K+GP+D V+KVF+ D  KT++   K DLFF DY+LG LFVQENYL V P   + N +  +E I+  A+ ++  DIV   +R+ N+W LLP+Q MY+SVIPG  M G+LT +INFP+W GK SK NK  R+   L +H+  S  G   +  SLS+DY   + + ++ PL +EG   +  TL  +    L+RED+D ++E T W    DP+S V S++K ALTRAYNK     PYSI+  KKG   S +
Sbjct:  309 YQKYLHREGPKNPGGKEIPEGKPNCLSGKVFVLTGVLDTIDRDQATSIIKQYGGKVTSSLSRNTSYIVVGDEPGPSKIEKATKLGTKQLTEDGLLDLLRNSHSSPDKKGGTSKKANKKESTKEESKKESTKEESKKESNVKNKHKDEVKTSKEEVKVPKEEIKTSNKEIKTPNKEVKTPKDEMKMNKPPHPLMKTASCNISLFFASEKTKKTTILPTTSQSKNIDVSATNRDENISKNASLWVDKYKPTSVKQIIGQQGDRSNVKKLLKWLGNWHSNHS-GKKKLVRPSPWAKDDFGSFFKAALLSGPPGVGKTTTAHLVCKELGFDVVEFNASDTRSKKLLNEEVSELLSTKSLSGYFEGASGAKPTEKHVLLMDEVDGMAGNEDRGGVQELIQLIKHSRIPIICMCNDRHHPKIRSLTNYCFDLQFSKPRVEQIRGAMLSICFKEGIKIAPEALNDIINGSNHDIRQVLHHLSMWSINDKQLSTEQIKEESEKAKKHIKLGPWDTVKKVFSADAHKTMSISDKMDLFFNDYSLGPLFVQENYLGVQPHKAKGNRNNQLERIAQTAEILSSGDIVEKAIRSKNSWSLLPMQAMYSSVIPGSIMEGHLTTQINFPAWFGKNSKSNKFSRLTQELYMHMSLSISG---SRRSLSLDYLQNIRDALVNPLIKEGADGVPQTLGFMQNYYLMREDLDSVMELTQWPQQKDPMSLVESKVKAALTRAYNKEGIMTPYSIIQVKKGSGKSSQ 1051          
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A498N0B2 (Replication factor C subunit 1 OS=Labeo rohita OX=84645 GN=ROHU_036526 PE=3 SV=1)

HSP 1 Score: 528.865 bits (1361), Expect = 1.357e-167
Identity = 321/767 (41.85%), Postives = 456/767 (59.45%), Query Frame = 3
Query:  519 KETKHEANVTSPP----KSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKES---------KTPVEKIEKP-----SENILYKPTTNKKHLS---GKPIVTISNSTK----STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXX---REDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNI 2669
            +E K +   TSP     K AN   Y  +LNR GP ALGSKEIP+G+  CL G  FV+TGVLES+ERDDA+SLIER+GG+VT  +S KTTYL++G + G SK +KA+ L TK INEDEL ++IR    K        KSK E   E  NK     + +   +P  P K++         + P     KP     S  +    +  KK LS    K    +S+ST     S++L+VDK++P++++ ++GQQGD+S A KL  WL NW  ++          F K G  D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ +  +I+ + +  S          +   K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR  +K++++ANY  DLRF++  +EQ+  A+ S  FKE + +P  ALNE+++ASN D+RQ+ HN+ +WSA +  M     K++A  + K+ K+GPFDV +KVF   +     +L  KSDLFF DY+L  LFVQENYL V P     N+   + L+S  ADSI   D+V  ++R+   W LLP Q +YASV+PGE M G ++    FPSWLGK+S   K+ RI+  L  H+   T   +S+  ++++DY   L + IL+PL+    E     +  ++     +ED+D ++E ++W    DP S + S++K A TRAYNK +   PYS+   KK    + +  L      E + + EE+DDG+  D  I
Sbjct:  298 EEQKKKDKNTSPEDLEKKRANSSAYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESLGTKIINEDELLELIRTKPGK--------KSKYEIAAEAENKSSKTRTPVSKGKPTTPSKKATPQGPSPNKRIPSAGKSKPGSASKSRTLGASRSEVKKSLSFDQSKSTSPVSHSTPESEGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQNWYKHHSGNTKAPLAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQILHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKHSRIIQELASHMSLKT---LSSREAINLDYLPYLRSAILEPLQSQGAEGASQSVKLMDDYNIIKEDVDNMMEISTWGAQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELIGELDGESQVQEEEEDDGVTADAMI 1053          
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A5J4NTZ1 (Replication factor C subunit 1 OS=Paragonimus westermani OX=34504 GN=DEA37_0004797 PE=3 SV=1)

HSP 1 Score: 523.087 bits (1346), Expect = 2.804e-166
Identity = 307/754 (40.72%), Postives = 443/754 (58.75%), Query Frame = 3
Query:  504 LKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETE-VEKFNKVKAKESKIEHKQPIKPIKES-----KTPVEKIEK------------------------PSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIG--------------EADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIIS----LTRDCKSDCWS----KELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHD-------KVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRT--TNNWGLLPLQGMYASVIPGEYMH-----GNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567
            L TP  +T+     T+P    ++K + A+  R GP ALGSK IPKG+PTCL G  FV+TGVLESIERDDA+ LIER GG++ K    KT YL++G EPGESK+ KA+  +TKQ++ED LF +IR  +++P+ + E + S   TE      K     S ++   PI   +E+      TPV++  K                        PS      PT +  H    P+ + SN     +L+V+K+KP + R ++GQ G  SPA +L  WLS W  ++  G K                 +    + ALLSGPPGIGKT++A +V  ELG+   E NAS  RSK  +   IS    +T   +  C         ++ L+MDE+DGM+GNEDRGG+ ELI++IK ++IPIIC+CNDRQS K++++ANY LDLRF +  +EQ+ AA+ S   KE +++P   L +I+ ASN D+RQV +++Q+W ++  D     S +  + K+ ++  FDVV+KVFT D        V T+    DLFFQDYNL  LFVQENY+ V P     NV+KT++L+S A+D I++ D+V   +R+  T  W LLP+QG+++ V PG  +      G     ++FPSW GKYS Q +  R+ + L  HL  +TH   +NP +L+MDY+ +L   + +PL+EGD++T LN L +  L RED+D ++E TSWS+  + +  + S++K ALTRA+NKS   LPY+  A  KG
Sbjct:  189 LHTPKVDTE-----TTPHTPISRKPFWAYQARDGPRALGSKPIPKGNPTCLKGKYFVITGVLESIERDDARELIERCGGKLLKTFGKKTDYLVVGREPGESKLAKAEAAHTKQLDEDGLFALIRELANEPLPSTEDVVSSANTERAPGLTKASPMSSPVKPSNPITGSRETVTSRKSTPVKRSAKSDTCLTAKPVVVSSSTLSNHSSATPSAPKSADPTKSDGHCGPSPVRSPSN-----LLWVEKYKPTSRRSLIGQTGPNSPANRLYEWLSAWHGHFSAGTKAHAYSSAPPWASGNTGDDGKWARAALLSGPPGIGKTSSASIVCAELGFATCELNASDCRSKRSLQEEISQALAMTNLAQMACGEISRLSTKQHVLIMDEVDGMAGNEDRGGIQELINMIKSTRIPIICMCNDRQSPKVRSLANYCLDLRFHRPRVEQIKAAMLSVTCKENVTIPATVLADIIQASNQDIRQVINSVQMWCSSPTDLILPASSSTGTLKDLRLSAFDVVRKVFTPDVSGGMNGGVATVNDSLDLFFQDYNLMPLFVQENYVNVKPRAAEGNVNKTLDLLSKASDDISLGDLVSGAIRSVGTGAWSLLPVQGIFSVVRPGRILRGPLPGGGPGGGVSFPSWFGKYSNQGRMSRVYTELAHHLSLATHASSANPRNLTMDYAAVLAELLTRPLKEGDVDTVLNTLIRYQLQREDLDSILELTSWSNRPNRMLGIDSKVKAALTRAFNKSAHLLPYATAAITKG 932          
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A4W4EN98 (Replication factor C subunit 1 OS=Electrophorus electricus OX=8005 PE=3 SV=1)

HSP 1 Score: 521.931 bits (1343), Expect = 1.743e-165
Identity = 324/767 (42.24%), Postives = 453/767 (59.06%), Query Frame = 3
Query:  393 TEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPP----KSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEK------------FNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLS-GKP-IVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG------FKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGII--SLTRDCKSDCWSKEL-----KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXX---REDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567
            T+ KAKSDS  Q  V  +S L   +++ + A    E  +   K+ K    VTSP     K  N   Y ++LNR GP ALGSKEIP+G   CL G  FV+TGVLES+ER+DA+SLIER+GG+VT  +S KTTYL++G + G SK +KA    TK +NEDEL  +IR    K        KSK E   E             F   + K   +  K    P +   TP+             P+  KK LS GK   V+ SN    ++L+VDK++P++++ ++GQQG++S A KL  WL +W  +++        F K G  D    FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRS++ +  +I  SL      + +S        K+ L+MDE+DGM+GNEDRGG+ ELI +IKQSKIPIIC+CNDR  +K++++ANY  DLRF++  +EQ+  A+ S  FKE + VP  ALNEI++A+N D+RQV HN+ +W+AT+  M     K++A+ + K+ K+GPFDV +KVFT  +     +L  KSDLFF DY+L  LFVQENY+ V P     N+   + L+S  ADSI   D+V  ++R+   W LLP Q +YASV+PGE M G +     FPSWLGK S  NK+ RI+  L  H+   T   + +  ++++DY   L + +L PL+    E T   +  ++     +ED D ++E +SW    DP S + S++K A TRAYN+ +   PYSI   KKG
Sbjct:  231 TKAKAKSDSPKQSLVRASSKL---ALLKRRAD--KEEERKKNKQEKKGKMVTSPEDSEKKRVNSAAYRSYLNREGPRALGSKEIPQGEENCLEGCVFVLTGVLESMEREDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAHSFGTKILNEDELLDLIRTKPGK--------KSKYEIAAEAEQLFYKGHLPTLFQNKRTKSQTLGSKGKATPPRLKHTPL------------GPSPAKKSLSAGKTRAVSTSNGDTCSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQHWHKHHRGDTKTAPRFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASSTRSRTSLKEVIAESLNNTSIKNFYSGTSQTVSDKHVLIMDEVDGMAGNEDRGGIQELIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGLKVPPPALNEIILATNQDIRQVLHNLSMWTATDKVMTYDQAKADAKNARKDMKMGPFDVCRKVFTSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNYLVLLSKTADSICDGDLVDKQIRSKQTWSLLPTQAIYASVLPGELMRGYMGQFPTFPSWLGKNSATNKHSRIVQELASHMGLKT---LCSKDAVNLDYLPYLRSALLVPLQSHGAEGTSQTVKLMDDYDIIKEDFDSIIEISSWGGQPDPYSRLDSKVKAAFTRAYNRESHLTPYSIQMVKKG 969          
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 504.597 bits (1298), Expect = 2.665e-161
Identity = 312/745 (41.88%), Postives = 447/745 (60.00%), Query Frame = 3
Query:  474 NKTAHLPNESLKTPTKETKHEANVT-SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE---KFNKVKAKESKIEHKQP----IKPIKESKTPVEKIEKPSENILYKPTTNKKHLS----------GK---PIVTISNSTKST-VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIE---TTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567
            +K+   P  +  T T  TK E +   S  K  N   +  +LNR GP ALGSKEIP+G+  CL G  FV+TGVLES+ERDDA+SLIER+GG+VT  +S KTTYL++G + G SK +KAQ   TK +NEDEL ++IR    K        KSK E   E   K  K K+   K+  ++P      P K S +P  K  +P       P+ + +  S          GK   P+   +     T +L+VDK++P++++ ++GQQG++S A KL  WL NW  ++          F K G  D    FK ALLSGPPG+GKTTTA +V +E+GY+ +E NAS TRSK+ +  +I+ + +  S          +   K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR  +K++++ANY  DLRF++  ++Q+  A+ S  FKE + +P  ALNEI++ASN D+RQV HN+ +WSAT+  M     K++A K+ K+ K+GPFDV +KVF   +     TL  KSDLFF DY+L  LFVQENY+ V P     N+   + L+S  ADSI   D+V  ++R+   W LLP Q +YASV+PGE M G ++    FPSWLGK+S   K+ RI+  L  H+   T   +S+  ++++DY   L   +L+PL+    E    ++ +++   +++ED D ++E +SW    DP S + S++K + TRAYNK     PYS+   KKG
Sbjct:  334 SKSISTPKSAGSTKTSPTKPEVSPEGSEKKRVNSAAFRNYLNRDGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAQSFGTKILNEDELLELIRTKPGK--------KSKYEIAAEAECKATKTKSPSQKLTSQRPSGTKTSPAKSSPSP--KKTRPGSASTPGPSGSSRRDSAPEVKKSLEFGKASPPVPRPAGEENGTSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQNWHKHHSGNTKPAAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEEVGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGTSQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVDQIKGAMMSIAFKEGVKIPPPALNEIILASNQDIRQVMHNLCMWSATDKVMTYDQAKADASKAKKDMKLGPFDVCRKVFVSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHHRIIQELASHMSLKT---LSSKEAVNLDYLPYLRTALLEPLQSQGSEGANKSVTLMDDYAIIKEDFDNIMEISSWGGQPDPYSKLDSKVKASFTRAYNKETHLTPYSLQTVKKG 1065          
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 504.597 bits (1298), Expect = 1.226e-160
Identity = 312/745 (41.88%), Postives = 447/745 (60.00%), Query Frame = 3
Query:  474 NKTAHLPNESLKTPTKETKHEANVT-SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE---KFNKVKAKESKIEHKQP----IKPIKESKTPVEKIEKPSENILYKPTTNKKHLS----------GK---PIVTISNSTKST-VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIE---TTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567
            +K+   P  +  T T  TK E +   S  K  N   +  +LNR GP ALGSKEIP+G+  CL G  FV+TGVLES+ERDDA+SLIER+GG+VT  +S KTTYL++G + G SK +KAQ   TK +NEDEL ++IR    K        KSK E   E   K  K K+   K+  ++P      P K S +P  K  +P       P+ + +  S          GK   P+   +     T +L+VDK++P++++ ++GQQG++S A KL  WL NW  ++          F K G  D    FK ALLSGPPG+GKTTTA +V +E+GY+ +E NAS TRSK+ +  +I+ + +  S          +   K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR  +K++++ANY  DLRF++  ++Q+  A+ S  FKE + +P  ALNEI++ASN D+RQV HN+ +WSAT+  M     K++A K+ K+ K+GPFDV +KVF   +     TL  KSDLFF DY+L  LFVQENY+ V P     N+   + L+S  ADSI   D+V  ++R+   W LLP Q +YASV+PGE M G ++    FPSWLGK+S   K+ RI+  L  H+   T   +S+  ++++DY   L   +L+PL+    E    ++ +++   +++ED D ++E +SW    DP S + S++K + TRAYNK     PYS+   KKG
Sbjct:  399 SKSISTPKSAGSTKTSPTKPEVSPEGSEKKRVNSAAFRNYLNRDGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAQSFGTKILNEDELLELIRTKPGK--------KSKYEIAAEAECKATKTKSPSQKLTSQRPSGTKTSPAKSSPSP--KKTRPGSASTPGPSGSSRRDSAPEVKKSLEFGKASPPVPRPAGEENGTSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQNWHKHHSGNTKPAAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEEVGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGTSQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVDQIKGAMMSIAFKEGVKIPPPALNEIILASNQDIRQVMHNLCMWSATDKVMTYDQAKADASKAKKDMKLGPFDVCRKVFVSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHHRIIQELASHMSLKT---LSSKEAVNLDYLPYLRTALLEPLQSQGSEGANKSVTLMDDYAIIKEDFDNIMEISSWGGQPDPYSKLDSKVKASFTRAYNKETHLTPYSLQTVKKG 1130          
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000018920.2 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856])

HSP 1 Score: 73.559 bits (179), Expect = 7.763e-13
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3
Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            +K ALLSGPPG+GKTT AH++A+  GY V+E NAS  RS       I      KS   + E   CLV+DEIDG
Sbjct:  362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434          
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000050361.1 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856])

HSP 1 Score: 73.1738 bits (178), Expect = 9.079e-13
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3
Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            +K ALLSGPPG+GKTT AH++A+  GY V+E NAS  RS       I      KS   + E   CLV+DEIDG
Sbjct:  362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434          
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000055823.1 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856])

HSP 1 Score: 73.1738 bits (178), Expect = 1.044e-12
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3
Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            +K ALLSGPPG+GKTT AH++A+  GY V+E NAS  RS       I      KS   + E   CLV+DEIDG
Sbjct:  362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434          
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99])

HSP 1 Score: 496.508 bits (1277), Expect = 2.019e-159
Identity = 289/722 (40.03%), Postives = 437/722 (60.53%), Query Frame = 3
Query:  558 KSANKKNYHAFLNRSGPVALGSKEIP--KGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNK---VKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKH-----------LSGKPIVTISNSTK---------STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK------------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPG-IISLTRDCK-------SDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLR----EGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIV 2552
            K  N   Y  +L+R GP ALGSKEIP  KG   CL G+TFV+TGVLES+ER++A+SL+ER+GG+VT  +S +T YL++G +PG SK+ KA+    KQ++ED L ++IR    K   +   I ++ E ++ K +     K    K     P KP KE+    ++    +   L+     ++            ++G+     + S +          ++L+VD+++PQ+++ I+GQQGD+SPA KL  WL  W +N+             +G  + G  D     K ALLSGPPG+GKTTTA +V +ELG + +E NAS  RSK+ M   + +  R+         S   +   ++ L+MDE+DGM+GNEDRGG+ ELI++IKQSK+P+IC+CNDR   K++++ANY  DLRF +  +EQ+  A+ S  FKE + +P  A+ EI++A+N D+RQV HN+ +WSA E  +     KS+A  + K+ K+GPFDV +KVF  D+     +L  KSDLFF DY++  LFVQENY+ V P     N+ K + L+S  ADSIA  D++  ++R+  +WGLLP Q ++ASVIPGE M G ++   +FPSWLG++S   KN RIL  L +H+   TH   +   +++++Y G L N++ +PL+    EG +  TL++++   L +ED+D L+E +S+    DPL+ +  ++K A TRAYNK +   PYS+ 
Sbjct:  283 KRQNVAAYRHYLSRDGPRALGSKEIPQPKGGENCLEGLTFVITGVLESLEREEARSLVERYGGKVTGNVSKRTDYLVVGRDPGNSKLDKAESCRVKQVDEDGLLELIRTRPGK--KSKYTIAAETEDKLTKTSPEKPTKTSPDKPTSTSPDKPTKEAGG-TDRTSTVTRKQLFSAVEQQRRTERTETGWAGRVTGRGPSAETRSPRKGSGPEVGGDSLLWVDRYRPQSLKNIIGQQGDQSPANKLLRWLRAWHSNHGGGSGGGRKAAPSVGRFRFGGKDDGSGLKAALLSGPPGVGKTTTAALVCQELGLSFVELNASDRRSKNSMKNEVATCLRNTSIEGFYHGSTAQTVSDRHVLLMDEVDGMAGNEDRGGIMELIALIKQSKVPVICMCNDRNHPKIRSLANYCFDLRFPRPRVEQIKGAMMSVAFKEGLKIPPAAMQEIILAANQDIRQVLHNLCVWSAREKALTYDQAKSDATSAKKDLKMGPFDVARKVFIADEETERMSLIDKSDLFFHDYSIAPLFVQENYVHVRPLAAGGNMKKHLTLLSKTADSIAQGDLIDRQIRSNQSWGLLPTQAIFASVIPGELMRGYMSQFPSFPSWLGRHSTTGKNARILQELTMHMSLRTH---ACQRAVNLEYLGALRNELARPLQTWGSEG-VAQTLSLMDDYCLTKEDVDSLMEVSSYHGSTDPLAKLDPKVKAAFTRAYNKESHLTPYSLA 997          
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001756.1 (pep scaffold:Pmarinus_7.0:GL477670:316882:341361:1 gene:ENSPMAG00000001571.1 transcript:ENSPMAT00000001756.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.4774 bits (171), Expect = 1.399e-12
Identity = 54/167 (32.34%), Postives = 69/167 (41.32%), Query Frame = 3
Query: 1122 TKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW-----------------ANNYKLGFKKIGEAD----------------------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            TKST L+VD+F P+   +++    D    + L  WL  W                 A   +LG      A+                       +K  LL GPPG+GKTT AHVVA   GY V+E NAS  RS       I      KS   + E   CLV+DE+DG
Sbjct:  274 TKSTGLWVDRFTPRHYTELLS---DDYMNRCLLKWLKLWDMVVFGRERKKKPPPVTAMPCRLGLVLCSGANWKSKAQITEDILEDELDAHNRPKYKVVLLCGPPGLGKTTLAHVVAHHAGYNVVEMNASDDRSPEVFRTRIEAATQMKSVLGASERPNCLVIDEVDG 437          
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1])

HSP 1 Score: 52.373 bits (124), Expect = 2.363e-7
Identity = 55/226 (24.34%), Postives = 99/226 (43.81%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL------GYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGM---SGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++P+ + +++  +   +  +K                  I E D     L  GPPG GKT+T    A++L         V+E NAS  R    + G I L+       + K  K  +++DE D M   + N  R G      + K ++    C+  +  SR +  + +     RF  L+ + M   +   + +E++ V DD +N +V  SN D+R+  + +Q
Sbjct:   11 WVEKYRPRVLDELISHKDILTTIQKF-----------------ISE-DRLPHLLFYGPPGTGKTSTILACARQLYGEKEAASMVLELNASDDRGIDVVRGPI-LSFASTRTIFKKGYKL-VILDEADAMTQDAQNALRRGFHPPAVMEKFTENTRFCLICNYLSRIIPALQSRCTRFRFGPLSSDLMVPRLLHVIAEEQVDVTDDGMNALVTLSNGDMRRALNMLQ 216          
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008618.1 (pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 gene:ENSPMAG00000007794.1 transcript:ENSPMAT00000008618.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.521 bits (114), Expect = 4.384e-6
Identity = 52/228 (22.81%), Postives = 98/228 (42.98%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++P  +++IVG +       +L +            F + G   +   A   GPPG GKTT+   +A+ L        V+E NAS      + R+K +M     +T         +     +++DE D M+    +     +    K ++  + C  +D+    ++ I +    LR+ +LT  Q+ + +      E +   DD L  I+  +  D+RQ  +N+Q
Sbjct:   50 WVEKYRPLKLKEIVGNE---ETVSRLEV------------FAREGNVPNIIIAECQGPPGTGKTTSILCLARALLGPAVRDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKSTRFALACNASDK---IIEPIQSRCAVLRYSRLTDSQVLSRLLEVCDHECVQRTDDGLEAIIFTAQGDMRQALNNLQ 252          
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC1 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000005743])

HSP 1 Score: 272.707 bits (696), Expect = 1.683e-78
Identity = 198/656 (30.18%), Postives = 341/656 (51.98%), Query Frame = 3
Query:  630 IPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGE--ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM-PGI------ISLTRDCKSDCWSKELK---YCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNI--QLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVF-------THDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNN-WGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKP-LREG--DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDP-LSSVSSQIKGALTRAYN 2519
             P+G P CL G+T V TGVL ++ER  +++L +R+G RVTK++S KT+ +++G E G  K++K ++L  K I+E+   Q+I            P +       EK  +      K+E +  I   KE++  V+K E+ S+  L     +  HL    +V   +      L+  K+ P  ++Q+ G +G      KL  WL+NW N+ K  FK  G+  +  F+ A+L GPPGIGKTT AH+VA+ELGY ++E NAS  RSK+ +  G+      +S+    K +  ++ L    + ++MDE+DGMSG  DRGG+ +L    +++  P+I ICN+R   K++      LD++FR+     + + + +   +EK  +  + ++ ++  +  D+RQV + +     +   ++  ++   ++   K   + PFD+  K+           +  TL  K  L+F D++   L +QENYL   P   +      +E ++ AA+ I++ DIV  K+R++   W LLPL  + +SV P   + G++  RINF +WLG+ SK  K  R+L  +  H R  T    ++   L +DY      ++L P L++G   I + + +++   L +ED D ++E      +    +  + + +K   TR YN
Sbjct:  150 FPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAIDEEGFKQLI---------AGMPAEGGDGEAAEKARR------KLEEQHNI-ATKEAELLVKKEEERSKK-LAATRVSGGHLERDNVVREEDK-----LWTVKYAPTNLQQVCGNKGS---VMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG-DRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPG-QSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTS---TDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGFTRKYN 775          
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: CTF18 (Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint [Source:SGD;Acc:S000004683])

HSP 1 Score: 65.4698 bits (158), Expect = 2.685e-11
Identity = 89/360 (24.72%), Postives = 146/360 (40.56%), Query Frame = 3
Query: 1110 ISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN-YKLGFKKIG--------EADHFKGA-----LLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM-PGIISLTRDCKSDCWSKELKYCLVMDEIDG------------MSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKS------------AMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGD---------LKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYN-----------LGGLFVQENYLKVAPFGCR 2012
            I+    S  L+V+K++P+    +VG +      +++  WL  W    +K    K+         E D  K       LL GPPGIGKT+ AHV+AK+ G++V E NAS  R+   +   I +L  +   D        CLV DEIDG            +  ++ +     L     +         +   +R +  I N L      KL       AVK                KE +++P  A+N+++  +  D+R   +N+Q   A+ +DS D          K+    S+K+  I  F +V ++F  D  + + ++   F++  N           L G F    Y+K +  G R
Sbjct:  106 ITGKIGSDTLWVEKWRPKKFLDLVGNE---KTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPLKRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERAGPMVKEKIYNLLFNHTFDT----NPVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQPDKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRNCINNLQFL-ASNVDSRDSSASDKPACAKNTWASSNKDSPISWFKIVNQLFRKDPHRDIKEQ---FYELLNQVELNGNSDRILQGCFNIFPYVKYSDNGIR 454          
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC4 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005454])

HSP 1 Score: 53.9138 bits (128), Expect = 5.511e-8
Identity = 57/231 (24.68%), Postives = 97/231 (41.99%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQG--DRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GYT--VIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKY------CLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRK-LQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++PQ +  IVG +   DR                     ++I +  +    ++SG PGIGKTT+ H +A EL    Y   V+E NAS  R        I + R+       K+L         +++DE D M+     G    L   ++             QS K ++ + +    LR+ KL+ E +   +   +  E +   +D L  I+  +  D+RQ  +N+Q
Sbjct:   11 WVEKYRPQVLSDIVGNKETIDR--------------------LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG-------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210          
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC3 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005234])

HSP 1 Score: 52.373 bits (124), Expect = 1.990e-7
Identity = 64/254 (25.20%), Postives = 113/254 (44.49%), Query Frame = 3
Query: 1122 TKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GYT--VIEYNASITRS----KSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDL-----------RFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGD 1823
            +K  + +V+K++P+T+ ++ GQ    +  +K               F   G+  H    L  GPPG GKT+T   +A+E+    Y+  V+E NAS  R     ++Q+    S TR      +SK  K  +++DE D M+ N  +  L  +I                 ++ +   +ANY   L           RF+ L  E +   + + +  EK+ +  +A   ++  SN D+R+V + +Q   AT +D+ D
Sbjct:    9 SKENLPWVEKYRPETLDEVYGQNEVITTVRK---------------FVDEGKLPHL---LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS-TRQI----FSKGFKL-IILDEADAMT-NAAQNALRRVIERYT-------------KNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT-LDNPD 223          
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO32627 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUL3])

HSP 1 Score: 489.96 bits (1260), Expect = 4.970e-160
Identity = 298/723 (41.22%), Postives = 439/723 (60.72%), Query Frame = 3
Query:  507 KTPTKETKHEANVTSPPKSANKKN-YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHK-----------QPIKPIKESKT--PVEKIEKPSENILY----KPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG------FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-DCW-------SKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFT-HDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGD-------IETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546
            +TP K  K E  + +P     KK+ Y +F++R GP ALGSKEIP+G+  C  G+TFVVTGVL+SIERD AQ LI+R+GG+VT ++S KT+YL++G + G SK+ KAQ L TKQ++ED    +IRN+  K     +P    K+ +  K +K ++  +  + +               P+ ++ T  P+  +   S  +LY    K   N   LS        N     +++VDK+KP  ++QI+GQQGD+S  +KL  W+ NW  N          F K  +    K ALLSGPPG+GKTTTA +V +ELGY+ +E NAS  RSK  +  ++S +   KS D +          LK+ L+MDE+DGM+G+EDRGG+ ELIS+IK SKIPIIC+CNDR S+K++++ANY  DLRF +  +EQ+  A+ S  +KE I +P  A+++I+  +N D+RQV HN+ +W+AT   +     K EA  + K+ K+GPFD ++K+ +  D  K +L  KSDLFF DY+L  LFVQENYL V+P     ++ KT++L+S  ADSI   D+V  ++R+ ++W LLP+Q M ++VIP  ++ G +  RI+FP WLGK SKQ +  RIL  L  H+R ST    ++ SS++++Y   L   +  PL + D       + + +++L+  NL RED D ++EA  +    DP+ S+ S+ K A TR YNK   K PY+
Sbjct:    6 RTPEK-IKQEETIATPSSLEKKKSGYRSFMSREGPKALGSKEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGASKLSKAQTLGTKQLDEDAFLDLIRNTPGKKSKHEQPDTPSKQPKKAKPSKQQSPTASSQDQAGNSQQTASQSSTSSPLTQTPTGSPISLVY--SACVLYTLLNKVAPNIYSLS-------KNLQYLYLMWVDKYKPSGIKQIIGQQGDKSNMRKLLNWVRNWHKNRTKTLPKSSFFNKDTDGASLKAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSKKTLEQVVSESLSNKSMDAFVGSNLAAKSGLKHVLLMDEVDGMAGSEDRGGMQELISLIKTSKIPIICMCNDRNSQKIRSLANYCFDLRFSRPRVEQIKGAMMSIAYKEGIKIPPPAMDQIIQGANQDIRQVLHNMSMWTATNKTLTYDQAKQEASNAQKDIKLGPFDAIRKLLSGSDSSKLSLKDKSDLFFCDYSLMPLFVQENYLMVSPSQASGDLKKTLDLVSRTADSICDGDLVSRQIRSNSSWSLLPMQAMLSAVIPSYFISGGMGQRIDFPQWLGKNSKQGRLDRILQELQAHMRISTS---ADKSSINLEYIPHLRQALTTPLTDQDPPDLKERVASVISLLDAYNLTREDWDSVMEAGLFDGHRDPMDSIPSKTKSAFTRTYNKEQHKTPYA 715          
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO28676 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5T5])

HSP 1 Score: 105.531 bits (262), Expect = 7.426e-24
Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 3
Query: 1986 LKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546
            L V+P     ++ KT++L+S  ADSI   D+V  ++R+ ++W LLP+Q M ++VIP  ++ G +  RI+FP WLGK SKQ +  RIL  L  H+R ST    ++ SS++++Y   L   +  PL +                                         Q K A TR YNK   K PY+
Sbjct:  222 LMVSPSQASGDLKKTLDLVSRTADSICDGDLVSRQIRSNSSWSLLPMQAMLSAVIPSYFISGGMGQRIDFPQWLGKNSKQGRLDRILQELQAHMRISTS---ADKSSINLEYIPHLRQALTTPLTD-----------------------------------------QTKSAFTRTYNKEQHKTPYA 364          

HSP 2 Score: 98.2117 bits (243), Expect = 1.436e-21
Identity = 84/251 (33.47%), Postives = 114/251 (45.42%), Query Frame = 3
Query:  822 QKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCK-------SDCWSK------ELKYCLVMDEIDGMSGNEDRGGL 1535
            Q L TKQ++ED    +IRN+  K                           K +H+QP  P K+ K       KPS+     PT + +  +G    T S S+ S+ L               Q    SP  K S             F K  +    K ALLSGPPG+GKTTTA +V +ELGY+ +E NAS  RSK  +  ++S +   K       S+C SK       LK+ L+MDE+DGM+G+EDRGG+
Sbjct:    2 QTLGTKQLDEDAFLDLIRNTPGK---------------------------KSKHEQPDTPSKQPKK-----AKPSKQ--QSPTASSQDQAGNSQQTASQSSTSSPLT--------------QTPTGSPVVKASF------------FNKDTDGASLKAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSKKTLEQVVSESLSNKSMDAFVGSNCASKGVAAKSGLKHVLLMDEVDGMAGSEDRGGM 192          
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO48429 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJV2])

HSP 1 Score: 70.0922 bits (170), Expect = 2.363e-12
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 3
Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            K ALL GPPG+GKTT AHV+A+  GY V+E NAS  R+       I +    KS   + E   CLV+DEIDG
Sbjct:  107 KVALLCGPPGLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSVLGANERPNCLVIDEIDG 178          
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO39385 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA25])

HSP 1 Score: 50.8322 bits (120), Expect = 1.913e-6
Identity = 60/275 (21.82%), Postives = 117/275 (42.55%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-GYT----VIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ--LWSATEMDSGDLKSEAQKSH--------KEFKIGPFDVVQKVFTH 1901
            +V+K++P  + +IVG +       +L ++                +  +    +++GPPG GKTT+   +A+ L G +    V+E NAS      + R+K +M     +T         K     +++DE D M+    +     +    K ++  + C  +D+    ++ I +    LR+ +LT  Q+   +     KE++   DD L  I+  +  D+RQ  +N+Q   +    ++S ++     + H        K   +G  D   KV +H
Sbjct:   55 WVEKYRPTKLHEIVGNE---ETVSRLEVF---------------AQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDK---IIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKEMLKSCSVGDIDEAYKVLSH 301          
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc1 (replication factor C subunit 1 [Source:NCBI gene;Acc:101171387])

HSP 1 Score: 512.301 bits (1318), Expect = 7.060e-164
Identity = 317/750 (42.27%), Postives = 449/750 (59.87%), Query Frame = 3
Query:  501 SLKTPTKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHK-QPIKPIK-ESKTP-------VEKIEKPSENILYKPTTNKKHL------------SGKPIVTISNSTKS--TVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG--------FKKIGEADH--FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRD-------CKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPL 2594
            +LKT  K  K E+  TSP  S  KK     +  FLNR GP ALGSKEIPKG+  CL G  FV+TGVLES+ER+DA+SLIER+GG+VT  +S KTTYL+ G + G SK++KA+ L T+ ++ED L ++IR    K  S  E I ++ E +  K     ++ SK   K Q I P K  S++P         + ++ SE     P     H             S  P V  S+ T    ++L+VDK++PQ+++ ++GQQG++S A KL  WL NW  N+  G        F K G+ D   +K ALLSGPPG+GKTTTA +V +ELG++ +E NAS TRSK+ +  ++S + +        K    +   ++ L+MDE+DGM+GNEDRGG+ ELI +I+ SKIPIIC+CNDR   K+++++NY  DLRF++  +EQ+  A+ S  +KE + +P  ALNEI++ASN D+RQV HN+ +WSA +  M     KS+A ++ K+ K+GPFDV +KVFT  +     +L  KSDLFF DY+L  LFVQENY+ V P     ++   + L+S  ADSI+  D+V  K+R+  NW LLP Q +YASV+PGE M G +T    FPSWLGK S  +K+ RI+  L  H+   T G   +  +L++DY   L   +L PL+    E     +       L+++D+D ++E + W    DP S + S++K A TRAYNK     PYS+   KKG    GE+ L
Sbjct:  355 ALKTSPK--KPESTSTSPDDSEKKKAHTLAFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLESMEREDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGKK-SVYE-IAAEAECKATKTKTPPSQASKNTPKTQKISPSKGNSRSPHTPSPSKTGRAQRSSEGST-PPGRGAAHTARRELGLSPSTSSSAPKVASSSGTAEGPSLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQNWYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVSESLNNTSIEDFYKGTSQTVSSRHVLIMDEVDGMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPRVEQIKGAMMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKDMKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKSHLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMTHFPVFPSWLGKNSSTSKHSRIMQELSSHMSLKTMG---SRQALNLDYLPFLRLALLAPLQRLGAEGAGQAVKLLDDYQLVKDDVDSIMEVSVWGGRPDPFSKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKGRRGGGETDL 1096          
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc1 (replication factor C subunit 1 [Source:NCBI gene;Acc:101171387])

HSP 1 Score: 509.605 bits (1311), Expect = 2.060e-163
Identity = 305/728 (41.90%), Postives = 435/728 (59.75%), Query Frame = 3
Query:  534 EANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPIS---TNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIK-----ESKTPVEK--IEKPSENILYKPTTNKKHLSGKPIVTISNSTKS--TVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG--------FKKIGEADH--FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRD-------CKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPL 2594
            ++  TSP  S  KK     +  FLNR GP ALGSKEIPKG+  CL G  FV+TGVLES+ER+DA+SLIER+GG+VT  +S KTTYL+ G + G SK++KA+ L T+ ++ED L ++IR    K        E   SK   + +K +  K          P K  +     E  TP  +         +   P+T+    S  P V  S+ T    ++L+VDK++PQ+++ ++GQQG++S A KL  WL NW  N+  G        F K G+ D   +K ALLSGPPG+GKTTTA +V +ELG++ +E NAS TRSK+ +  ++S + +        K    +   ++ L+MDE+DGM+GNEDRGG+ ELI +I+ SKIPIIC+CNDR   K+++++NY  DLRF++  +EQ+  A+ S  +KE + +P  ALNEI++ASN D+RQV HN+ +WSA +  M     KS+A ++ K+ K+GPFDV +KVFT  +     +L  KSDLFF DY+L  LFVQENY+ V P     ++   + L+S  ADSI+  D+V  K+R+  NW LLP Q +YASV+PGE M G +T    FPSWLGK S  +K+ RI+  L  H+   T G   +  +L++DY   L   +L PL+    E     +       L+++D+D ++E + W    DP S + S++K A TRAYNK     PYS+   KKG    GE+ L
Sbjct:  330 QSTSTSPDDSEKKKAHTLAFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLESMEREDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGKKSVYEIAAEAEASKNTPKTQKISPSKGNSRSPHTPSPSKTGRAQRSSEGSTPPGRGAAHTARRELGLSPSTS----SSAPKVASSSGTAEGPSLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQNWYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVSESLNNTSIEDFYKGTSQTVSSRHVLIMDEVDGMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPRVEQIKGAMMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKDMKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKSHLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMTHFPVFPSWLGKNSSTSKHSRIMQELSSHMSLKTMG---SRQALNLDYLPFLRLALLAPLQRLGAEGAGQAVKLLDDYQLVKDDVDSIMEVSVWGGRPDPFSKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKGRRGGGETDL 1050          
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: ENSORLT00000011025.2 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:101165699])

HSP 1 Score: 77.0258 bits (188), Expect = 7.671e-14
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 3
Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505
            FK ALLSGPPG+GKTT AHV+AK  GY V+E NAS  RS       I      KS   + E   CL++DEIDG
Sbjct:  344 FKVALLSGPPGLGKTTLAHVIAKHAGYNVVEINASDDRSAEVFQKRIDTATQMKSVLGANERPNCLIIDEIDG 416          
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc2 (replication factor C subunit 2 [Source:NCBI gene;Acc:101163395])

HSP 1 Score: 56.9954 bits (136), Expect = 5.073e-8
Identity = 56/228 (24.56%), Postives = 104/228 (45.61%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790
            +V+K++P  + +IVG +       +L +            F + G   +    +++GPPG GKTT+   +A+ L        V+E NAS      + R+K +M     +T         K     +++DE D M+    +     +    K ++  + C  +D+    +Q+    L   R+ KLT  Q+ + ++  + KE++SV DD L  ++  S  D+RQ  +N+Q
Sbjct:   39 WVEKYRPLKLNEIVGNE---ETVSRLEV------------FAREGNVPNI---IIAGPPGTGKTTSILCLARALLGSAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVL---RYAKLTDGQILSRLQEVIEKERLSVSDDGLEAVIFTSQGDMRQALNNLQ 238          
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: atad5a (ATPase family AAA domain-containing protein 5 [Source:NCBI gene;Acc:101166554])

HSP 1 Score: 51.6026 bits (122), Expect = 4.476e-6
Identity = 34/111 (30.63%), Postives = 47/111 (42.34%), Query Frame = 3
Query: 1134 VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWA--------NNYKL-------------GFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRS 1403
            +L+ DK++PQ   +I+         K+L  WL  W          N K              G  + GE       L+ GP G+GKT   +  A+ELG+ V E NAS  RS
Sbjct:  967 LLWTDKYQPQLCSEIIDNPAS---VKRLYSWLKEWKLRTDREEKKNQKSNKPEEGNVDSDWDGPDEYGEDTLCNTMLIIGPTGVGKTAAVYACAQELGFKVFEVNASSQRS 1074          
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000005481.1 (SMESG000005481.1)

HSP 1 Score: 1622.45 bits (4200), Expect = 0.000e+0
Identity = 879/881 (99.77%), Postives = 881/881 (100.00%), Query Frame = 3
Query:   30 MKRLSSIPSPNSDFEFDIXXXXXXXXXXXXXXXXXXXXXXANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDXXXXXXXXXXXXXXXXXXLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNIL 2672
            MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDDFFSSTKKSKKTVDSNSNLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFV+TGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELISIIKQSKIPIICICNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTLNILNQLNLLREDIDLL+EATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPEMETEEIEEEAEEKDDGIDNDCNIL
Sbjct:    1 MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDDFFSSTKKSKKTVDSNSNLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVMTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELISIIKQSKIPIICICNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTLNILNQLNLLREDIDLLIEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPEMETEEIEEEAEEKDDGIDNDCNIL 881          
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000040188.1 (SMESG000040188.1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.327e-11
Identity = 93/398 (23.37%), Postives = 154/398 (38.69%), Query Frame = 3
Query: 1119 STKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW---------------ANNYKLGFK--------KIGEADHF---KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCK----SDCWSKELK--YCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQ------SRKLQTIANYLLDLRFRKL------------TLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLW---SATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK------TLTQKSDLFFQDYNLGGLF------------VQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRT 2099
            S  S  L+V K+ P   R+ V      S  + L  WL +W                 N+  G K        +I   D     K  LLSGPPG+GKTT A +VA+ +GY  +E NAS  RS       I    D +    +D  +++L    CL++DEIDG +G      L   I    +++     +   ++      +R +  I N L     R+L               Q+   +      E +    + L  ++  SN D+R   + +Q        +  + +L S      K+  IG F + Q +FT   +K      T    ++L  ++ N+  L             + ENYL +  F      D  ++ + +AAD +  +D+    + +
Sbjct:  134 SASSKTLWVTKYAP---RKYVDLLSSESANRSLLSWLKSWDKHVFNRNTKFTDKLIYNFNTGNKGTNFEEVLQINPKDQMPVKKVVLLSGPPGLGKTTLAQIVARSVGYYPVEINASDDRSPEVFKNRIEALNDTQLGISNDSGNEQLMKPCCLILDEIDG-TGVAAVNILVNAILASNKTENSTKTVGKKKEKSPLKINRPIICICNDLYAQSLRQLRPLCYVIKIIPPDYNQLMRRLSEIGKLENLEFDHNLLRNVIDMSNRDIRSCLNTLQFIEHKDPNDFVATNLVSNINIGQKDVDIGIFKIWQDIFTEPNLKRSYLATTGKNSNELATRNKNILALARSAGDLDKIISGIHENYLSIVRFK-----DFFLQGMVDAADWMVFNDMTNVYINS 522          
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000041132.1 (SMESG000041132.1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.584e-6
Identity = 58/228 (25.44%), Postives = 102/228 (44.74%), Query Frame = 3
Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKE-LGYT----VIEYNASITRSKSQMPGIISLTRDCKSDCWSK-----ELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQL 1793
            +++K++P  +  IVG +G     K+L +            F K G   +    +++GPPG GKTT+   +A+  LG T    V+E NAS  R      GI  +    KS   +K      +   +++DE D M+    +         +  +       CND  S+ ++ I +    LR+ KL+  ++ A +   +  E +   DD L  I+  +  D+RQ  +N++L
Sbjct:   14 WLEKYRPLVLSDIVGNEG---TIKRLEI------------FSKQG---NLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDR------GIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQA--LRRTMEMYSNTTRFAFACND-SSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVEL 214          
The following BLAST results are available for this feature:
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RFC16.804e-16041.05replication factor C subunit 1 [Source:HGNC Symbol... [more]
RFC19.858e-16040.99replication factor C subunit 1 [Source:HGNC Symbol... [more]
RFC11.714e-3648.72replication factor C subunit 1 [Source:HGNC Symbol... [more]
CHTF181.641e-1048.61chromosome transmission fidelity factor 18 [Source... [more]
CHTF181.669e-1048.61chromosome transmission fidelity factor 18 [Source... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc-11.743e-8036.45Replication factor C subunit 1 [Source:UniProtKB/... [more]
rfc-24.775e-926.75RFC (DNA replication factor) family [Source:UniPr... [more]
ctf-182.144e-839.47Chromosome Transmission Fidelity factor homolog [... [more]
ctf-182.144e-839.47Chromosome Transmission Fidelity factor homolog [... [more]
ctf-182.144e-839.47Chromosome Transmission Fidelity factor homolog [... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Gnf12.896e-14540.05gene:FBgn0004913 transcript:FBtr0078837[more]
Gnf14.050e-14039.01gene:FBgn0004913 transcript:FBtr0100159[more]
cutlet1.088e-844.44gene:FBgn0015376 transcript:FBtr0077541[more]
RfC41.022e-725.51gene:FBgn0260985 transcript:FBtr0073264[more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc18.179e-16441.67replication factor C (activator 1) 1 [Source:ZFIN;... [more]
chtf181.240e-1336.20CTF18, chromosome transmission fidelity factor 18 ... [more]
chtf181.261e-1336.20CTF18, chromosome transmission fidelity factor 18 ... [more]
atad5a8.653e-828.57ATPase family AAA domain containing 5a [Source:ZFI... [more]
rfc22.059e-624.12replication factor C (activator 1) 2 [Source:ZFIN;... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
pcsk23.070e-15541.36proprotein convertase subtilisin/kexin type 2 [Sou... [more]
pcsk28.090e-15541.36proprotein convertase subtilisin/kexin type 2 [Sou... [more]
pcsk29.889e-15541.36proprotein convertase subtilisin/kexin type 2 [Sou... [more]
pcsk23.674e-13538.54proprotein convertase subtilisin/kexin type 2 [Sou... [more]
pcsk23.143e-13338.18proprotein convertase subtilisin/kexin type 2 [Sou... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rfc11.791e-15740.59replication factor C (activator 1) 1 [Source:MGI S... [more]
Rfc11.863e-15740.59replication factor C (activator 1) 1 [Source:MGI S... [more]
Rfc14.892e-15740.81replication factor C (activator 1) 1 [Source:MGI S... [more]
Rfc11.080e-15640.64replication factor C (activator 1) 1 [Source:MGI S... [more]
Rfc11.990e-2133.96replication factor C (activator 1) 1 [Source:MGI S... [more]
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BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P35251|RFC1_HUMAN4.734e-15940.99Replication factor C subunit 1 OS=Homo sapiens OX=... [more]
sp|P35601|RFC1_MOUSE1.418e-15640.59Replication factor C subunit 1 OS=Mus musculus OX=... [more]
sp|P35600|RFC1_DROME2.903e-14440.05Replication factor C subunit 1 OS=Drosophila melan... [more]
sp|Q9C587|RFC1_ARATH1.006e-8734.37Replication factor C subunit 1 OS=Arabidopsis thal... [more]
sp|Q2R2B4|RFC1_ORYSJ6.714e-8433.43Replication factor C subunit 1 OS=Oryza sativa sub... [more]
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BLAST of Replication factor C subunit 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7VAU21.133e-16942.75BRCT domain-containing protein OS=Capitella teleta... [more]
A0A2P8ZJY61.024e-16843.11Replication factor C subunit 1 OS=Blattella german... [more]
A0A498N0B21.357e-16741.85Replication factor C subunit 1 OS=Labeo rohita OX=... [more]
A0A5J4NTZ12.804e-16640.72Replication factor C subunit 1 OS=Paragonimus west... [more]
A0A4W4EN981.743e-16542.24Replication factor C subunit 1 OS=Electrophorus el... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc12.665e-16141.88replication factor C (activator 1) 1 [Source:ZFIN;... [more]
rfc11.226e-16041.88replication factor C (activator 1) 1 [Source:ZFIN;... [more]
ENSAMXT00000018920.27.763e-1350.68chromosome transmission fidelity factor 18 [Source... [more]
ENSAMXT00000050361.19.079e-1350.68chromosome transmission fidelity factor 18 [Source... [more]
ENSAMXT00000055823.11.044e-1250.68chromosome transmission fidelity factor 18 [Source... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rfc12.019e-15940.03replication factor C (activator 1) 1 [Source:ZFIN;... [more]
ENSPMAT00000001756.11.399e-1232.34pep scaffold:Pmarinus_7.0:GL477670:316882:341361:1... [more]
rfc52.363e-724.34replication factor C (activator 1) 5 [Source:ZFIN;... [more]
ENSPMAT00000008618.14.384e-622.81pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 ... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4
Match NameE-valueIdentityDescription
RFC11.683e-7830.18Subunit of heteropentameric Replication factor C (... [more]
CTF182.685e-1124.72Subunit of a complex with Ctf8p; shares some subun... [more]
RFC45.511e-824.68Subunit of heteropentameric Replication factor C (... [more]
RFC31.990e-725.20Subunit of heteropentameric Replication factor C (... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO326274.970e-16041.22Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO286767.426e-2432.09Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO484292.363e-1250.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393851.913e-621.82Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rfc17.060e-16442.27replication factor C subunit 1 [Source:NCBI gene;A... [more]
rfc12.060e-16341.90replication factor C subunit 1 [Source:NCBI gene;A... [more]
ENSORLT00000011025.27.671e-1453.42chromosome transmission fidelity factor 18 [Source... [more]
rfc25.073e-824.56replication factor C subunit 2 [Source:NCBI gene;A... [more]
atad5a4.476e-630.63ATPase family AAA domain-containing protein 5 [Sou... [more]
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BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000005481.10.000e+099.77SMESG000005481.1[more]
SMESG000040188.11.327e-1123.37SMESG000040188.1[more]
SMESG000041132.14.584e-625.44SMESG000041132.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015448 ID=SMED30015448|Name=Replication factor C subunit 1|organism=Schmidtea mediterranea sexual|type=transcript|length=2943bp
ATTGTTAAATTTCTAATTTCAAAATTGTAATGAAGCGTCTTTCGTCTATT
CCCTCACCTAATTCAGATTTTGAGTTTGATATATCAGAAATAAAGAATAA
ATATAAACGTTCCAAAAAAGAAAAAAAACCCGAAGAATCTACAAGTTCAG
CTAATAAAAAAGATAAAAGCTTACCCAAAAGCCAATTAACGATTAAAGCA
GCTTTTGATAATGCTAAACCTGTTAAACGACATGTTACATGTTTAGATGA
TTACTTTAAAAAATCTAATGCTAAATCGGCTGTGCAAGAAATATCTCCCG
ATGATTTTTTTTCCTCTACAAAGAAGTCAAAAAAAACAGTTGACAGTAAT
TCAAATTTAAATATTGAGACAACTATTCCAGCTACACTTAAAACTGAAGT
AAAGGCAAAATCCGATTCAAAATTCCAACCGTTTGTAGTTGAAAATTCTC
CATTAAAAACCCAATCAGTTGTCAACAAAACTGCCCATTTACCAAATGAA
TCTCTAAAAACTCCTACTAAAGAAACAAAACATGAAGCCAATGTCACTTC
ACCACCAAAATCGGCAAATAAAAAAAACTATCATGCCTTTTTAAATAGAT
CAGGGCCAGTTGCATTGGGTAGCAAAGAAATTCCAAAAGGCTCACCTACT
TGCTTATCTGGAATGACATTTGTTGTGACAGGCGTCTTAGAAAGCATCGA
AAGGGACGACGCTCAGTCACTCATTGAAAGGCATGGTGGTCGAGTAACGA
AAGCCTTAAGCGGAAAGACTACATATTTAATTATCGGATCTGAACCAGGA
GAAAGTAAAATTCAAAAAGCTCAAAAATTGAATACAAAACAAATCAACGA
AGACGAATTGTTTCAAATGATTCGTAATTCAAGTTCTAAACCGATTTCAA
CAAACGAACCAATCAAATCAAAGAAAGAAACTGAAGTTGAAAAATTTAAT
AAAGTCAAAGCTAAAGAATCGAAAATTGAACACAAACAACCCATAAAACC
GATTAAAGAATCTAAAACCCCAGTGGAAAAGATTGAAAAACCTTCAGAGA
ATATATTGTATAAACCAACAACAAACAAGAAACATTTATCTGGTAAACCT
ATAGTGACAATCTCCAATTCGACGAAATCCACAGTTCTCTTCGTTGACAA
ATTCAAACCTCAAACCATGAGACAAATCGTTGGCCAACAAGGAGATCGCA
GTCCAGCTAAAAAGCTTTCTCTATGGCTGTCTAATTGGGCAAATAACTAC
AAACTCGGATTTAAAAAGATCGGCGAAGCAGACCATTTCAAAGGCGCTCT
ATTATCGGGTCCACCGGGAATCGGCAAAACAACAACTGCCCATGTCGTTG
CCAAGGAGCTGGGATACACAGTCATTGAATATAACGCATCGATTACTCGC
TCTAAATCCCAAATGCCTGGCATTATATCACTGACCAGAGACTGCAAATC
CGACTGCTGGTCAAAAGAGCTGAAATATTGTCTGGTTATGGATGAAATTG
ATGGAATGTCTGGCAATGAAGACCGAGGTGGTTTGACAGAGTTGATCAGC
ATAATAAAGCAATCGAAAATCCCGATTATTTGCATTTGCAATGATCGACA
GTCGAGAAAATTACAAACGATTGCAAACTATCTGTTGGATTTACGATTTC
GAAAATTGACTCTGGAACAAATGACAGCGGCAGTGAAATCAGCAATGTTC
AAGGAGAAAATCTCAGTGCCAGATGATGCTCTCAATGAAATTGTGATGGC
ATCGAATTTCGATCTGAGACAAGTGTTTCACAATATCCAACTGTGGTCGG
CTACTGAAATGGACAGCGGGGATTTAAAATCGGAAGCTCAGAAATCACAC
AAGGAATTCAAAATCGGCCCTTTCGATGTCGTTCAGAAAGTCTTCACTCA
TGACAAAGTGAAAACTTTGACTCAGAAATCGGATCTGTTTTTCCAGGATT
ACAATTTAGGAGGATTGTTTGTCCAGGAGAATTATCTCAAAGTTGCTCCT
TTTGGATGCAGGAATAATGTGGATAAAACCATGGAACTAATTTCTAATGC
TGCGGACAGTATTGCCATGTCGGATATAGTTGGTACTAAATTACGCACTA
CAAACAATTGGGGATTGTTACCGCTACAAGGAATGTATGCCAGCGTTATC
CCAGGAGAATATATGCATGGCAATTTGACGGATAGGATCAATTTTCCCAG
TTGGTTGGGTAAATATAGCAAGCAAAATAAAAACAAGAGAATATTGTCGA
CTTTGTGTCTGCATCTGAGACACAGTACTCATGGAGGAGTTTCAAATCCT
TCTTCATTGTCCATGGATTATAGTGGGATTTTATTGAATAAGATTTTGAA
GCCACTGAGAGAAGGAGACATTGAAACAACATTAAATATTCTCAATCAAT
TAAATTTACTTCGCGAGGACATTGACCTATTAGTTGAAGCGACTTCTTGG
TCTCATTTAGGAGATCCGTTGTCCAGTGTTAGTAGTCAAATTAAGGGAGC
TTTGACTCGTGCTTATAACAAAAGCAATTTCAAACTCCCCTACAGCATTG
TTGCATTTAAAAAAGGAATTGCAGCGTCTGGTGAATCGCCTTTACCAGAA
ATGGAGACAGAAGAAATTGAAGAAGAAGCCGAAGAAAAGGACGATGGAAT
CGACAATGATTGTAATATATTGAAAAAAGTCAAGAAATCCAAAGATGCTA
AACCTAAAAAAAGTACCTCAAGTAAGCCGAAGAAAGAATCTGTAAAGAAA
ACTAAAACTAAAAAATAGAATATTTAATTATAAATGATGGAAGATATTAA
GATTATAAATTTGATATTTGGGGTAGAATTTAATGTTTGTTATGGCTTAT
TGAGTTCTTATTTTGGTTTTTGTCGGCGAATCAAAATTTTAAGCAAATCA
GTATTAAAATAGTTCGCTATAATCGAAACCGGGTATTTGAGGC
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protein sequence of SMED30015448-orf-1

>SMED30015448-orf-1 ID=SMED30015448-orf-1|Name=SMED30015448-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=913bp
MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPK
SQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDDFFSSTKKS
KKTVDSNSNLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNK
TAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKE
IPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYL
IIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKE
TEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNK
KHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWL
SNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIE
YNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRG
GLTELISIIKQSKIPIICICNDRQSRKLQTIANYLLDLRFRKLTLEQMTA
AVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLK
SEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQE
NYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQ
GMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHST
HGGVSNPSSLSMDYSGILLNKILKPLREGDIETTLNILNQLNLLREDIDL
LVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAAS
GESPLPEMETEEIEEEAEEKDDGIDNDCNILKKVKKSKDAKPKKSTSSKP
KKESVKKTKTKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0003689DNA clamp loader activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
GO:0005663DNA replication factor C complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom
IPR003593AAA+_ATPase
IPR012178RFC1
IPR027417P-loop_NTPase
IPR013725DNA_replication_fac_RFC1_C
IPR003959ATPase_AAA_core
IPR008921DNA_pol3_clamp-load_cplx_C
Vocabulary: biological process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 206..284
e-value: 1.2E-13
score: 61.3
IPR001357BRCT domainPFAMPF00533BRCTcoord: 206..281
e-value: 9.4E-17
score: 61.2
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 204..283
score: 15.537
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 419..546
e-value: 1.1E-7
score: 41.5
IPR036420BRCT domain superfamilyGENE3DG3DSA:3.40.50.10190coord: 177..284
e-value: 1.2E-36
score: 126.9
IPR036420BRCT domain superfamilySUPERFAMILYSSF52113BRCT domaincoord: 204..285
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 368..542
e-value: 3.4E-43
score: 149.8
NoneNo IPR availableGENE3DG3DSA:1.20.272.10coord: 613..722
e-value: 2.3E-32
score: 113.1
NoneNo IPR availableGENE3DG3DSA:1.10.8.60coord: 544..611
e-value: 6.4E-11
score: 43.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 857..873
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 874..903
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 852..912
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..178
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 27..906
NoneNo IPR availablePANTHERPTHR23389:SF6REPLICATION FACTOR C SUBUNIT 1coord: 27..906
NoneNo IPR availableCDDcd00009AAAcoord: 411..541
e-value: 2.51654E-14
score: 69.0971
NoneNo IPR availableCDDcd17752BRCT_RFC1coord: 204..282
e-value: 5.93593E-40
score: 139.656
NoneNo IPR availableCDDcd18140HLD_clamp_RFCcoord: 543..591
e-value: 7.62314E-5
score: 39.4345
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 424..523
e-value: 7.3E-12
score: 45.8
IPR013725DNA replication factor RFC1, C-terminalPFAMPF08519RFC1coord: 678..831
e-value: 2.3E-42
score: 144.8
IPR012178Replication factor C subunit 1PIRSFPIRSF036578RFC1coord: 4..912
e-value: 1.4E-218
score: 725.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 370..595
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILYSSF48019post-AAA+ oligomerization domain-likecoord: 612..748