Replication factor C subunit 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015448 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969]) HSP 1 Score: 502.286 bits (1292), Expect = 6.804e-160 Identity = 305/743 (41.05%), Postives = 441/743 (59.35%), Query Frame = 3 Query: 507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWAN-------NYKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 KTP TK + + SP S K+ Y ++LNR GP ALGSKEIPKG+ CL G+ FV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK I+ED L +IR K KSK E VE K KESK+E K+ I P K+ + + K K ++ +K K+ ++ + + S+ K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + K G F + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS + I++ + + S S K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++ ++ K+ K+GPFDV +KVF + +L KSDLFF DY++ LFVQENY+ V P ++ K + L+S AADSI D+V +++R+ NW LLP Q +YASV+PGE M G +T FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY +L + +++PL ++ + +++ L++ED + ++E +SW P S + ++K A TRAYNK PYS+ A K Sbjct: 352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1080
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969]) HSP 1 Score: 501.901 bits (1291), Expect = 9.858e-160 Identity = 305/744 (40.99%), Postives = 441/744 (59.27%), Query Frame = 3 Query: 507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN--------YKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 KTP TK + + SP S K+ Y ++LNR GP ALGSKEIPKG+ CL G+ FV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK I+ED L +IR K KSK E VE K KESK+E K+ I P K+ + + K K ++ +K K+ ++ + + S+ K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + K G F + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS + I++ + + S S K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++ ++ K+ K+GPFDV +KVF + +L KSDLFF DY++ LFVQENY+ V P ++ K + L+S AADSI D+V +++R+ NW LLP Q +YASV+PGE M G +T FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY +L + +++PL ++ + +++ L++ED + ++E +SW P S + ++K A TRAYNK PYS+ A K Sbjct: 352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1081
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: RFC1 (replication factor C subunit 1 [Source:HGNC Symbol;Acc:HGNC:9969]) HSP 1 Score: 137.887 bits (346), Expect = 1.714e-36 Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE----KFNKVKAKESKIEHKQPIKPI 1004 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+ FV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK I+ED L +IR K KSK E VE ++ V+ S K +K I Sbjct: 4 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEELGYSYVELNASDTRSKSSLKAI 151
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: CHTF18 (chromosome transmission fidelity factor 18 [Source:HGNC Symbol;Acc:HGNC:18435]) HSP 1 Score: 67.0106 bits (162), Expect = 1.641e-10 Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K ALL GPPG+GKTT AHV+A+ GY+V+E NAS RS I +S + CLV+DEIDG Sbjct: 368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDG 439
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Match: CHTF18 (chromosome transmission fidelity factor 18 [Source:HGNC Symbol;Acc:HGNC:18435]) HSP 1 Score: 67.0106 bits (162), Expect = 1.669e-10 Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K ALL GPPG+GKTT AHV+A+ GY+V+E NAS RS I +S + CLV+DEIDG Sbjct: 368 KVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDG 439
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: rfc-1 (Replication factor C subunit 1 [Source:UniProtKB/TrEMBL;Acc:Q18841]) HSP 1 Score: 280.026 bits (715), Expect = 1.743e-80 Identity = 183/502 (36.45%), Postives = 281/502 (55.98%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWA-NNYKLGFK----------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISL------------TRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGD---IETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567 +VDK+KP+ M ++VGQ GD+SP KL W+ +WA +N G K + FK ALLSG PG+GKTT A++ ++LG ++E NAS RSK + I + C ++++ + L+MDE+DGMSGNEDR G++ELI IIK+SKIPIICICNDRQ K++T+ANY DLRF K +E + + + + +EK+ + + L+EI+ S D+RQ +N+Q+ S A+ + K+ + F +++ D TL +K ++FF DY + LFVQ+NYL + +++ + + I AAD I++ D++ ++R +W LL Q M ++ +P G+L I FPSWLGK S K KR+L L H G S + DY+ +L KI KPL E + I ++ + + +L+++D + L E +W DP S + S++K +LTR NK+ LPYS+ + KG Sbjct: 280 WVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKAALLSGSPGVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFGAKKCAPQD-NQKVHHILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQMRSKG--------VGAKINQKDMAVDAFSAARRLL--DSRTTLMEKQEMFFTDYGIMPLFVQDNYLNMK--NEKHSPIQAIRGIRKAADFISLGDLIDRQIRGGGSWKLLNEQSMISAALPAIATGGHLKAMIQFPSWLGKNSTAGKRKRLLQQLVQHTHLKVSAGT---HSFATDYAPMLRQKITKPLLEHEADGIPDVISTMTEYDLIKDDTEALTEIVAWPGKIDPASKILSKVKASLTRTLNKTGRMLPYSMDSVSKG 765
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: rfc-2 (RFC (DNA replication factor) family [Source:UniProtKB/TrEMBL;Acc:O44175]) HSP 1 Score: 59.6918 bits (143), Expect = 4.775e-9 Identity = 61/228 (26.75%), Postives = 98/228 (42.98%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSK----ELKY-CLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKL-QTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++P+ + IVG + N K IG + +LSGPPG GKTT+ +A+EL V+E NAS R GI + K+ +K E ++ +++DE D M+ G L ++ QS K+ + I + LR+ KL+ Q+ VK EK++ D L I+ + D+RQ +N+Q Sbjct: 12 WVEKYRPKVLADIVGNE------------------NIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEAVLELNASDER------GIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTD----GAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQ 211
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350]) HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K LLSGP G+GK+T A +VA++ GY+ I+ NAS R+ + + G + +R +D + CL++DEIDG Sbjct: 331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350]) HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K LLSGP G+GK+T A +VA++ GY+ I+ NAS R+ + + G + +R +D + CL++DEIDG Sbjct: 331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Match: ctf-18 (Chromosome Transmission Fidelity factor homolog [Source:UniProtKB/TrEMBL;Acc:Q21350]) HSP 1 Score: 58.5362 bits (140), Expect = 2.144e-8 Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ----MPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K LLSGP G+GK+T A +VA++ GY+ I+ NAS R+ + + G + +R +D + CL++DEIDG Sbjct: 331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDAD----QRPACLILDEIDG 402
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: Gnf1 (gene:FBgn0004913 transcript:FBtr0078837) HSP 1 Score: 458.373 bits (1178), Expect = 2.896e-145 Identity = 292/729 (40.05%), Postives = 418/729 (57.34%), Query Frame = 3 Query: 516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555 T E +HE K A+ Y + NRS + GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V + K YL++G E G K+ A++LN ++ED LF +IR S K + T+ KKE E K + + + K EH P KE+K + + + + +P++ K+H + + +VDK KP ++++IVGQ G S KL WLS W N+ K K + +K ALLSGPPGIGKTTTA +V KELG+ +E+NAS TRSK + +S KS + K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR K++++ NY DLRF++ LEQ+ + S FKEK+ + + EI+ A+N D+RQ ++I L SA E KS Q + K+ K+GP++VV+KVFT D+ K + KSDLFF DY+L LFVQ+NYL+V P G + +V + ++ AD++++ D+V ++R + W LLP Q ++SV+PGE+M G+ T +INFP WLGK SK K R+ L H R T G + S+ +DY+ LL+ I++PL +EG + L+++ +LLRED+D LVE TSW PL +V ++K ALTR+YNK YS A Sbjct: 197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 906
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: Gnf1 (gene:FBgn0004913 transcript:FBtr0100159) HSP 1 Score: 445.277 bits (1144), Expect = 4.050e-140 Identity = 293/751 (39.01%), Postives = 420/751 (55.93%), Query Frame = 3 Query: 516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRS---------PAK-------------KLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555 T E +HE K A+ Y + NRS + GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V + K YL++G E G K+ A++LN ++ED LF +IR S K + T+ KKE E K + + + K EH P KE+K + + + + +P++ K+H + + +VDK KP ++++IVGQ G S AK +L WLS W N+ K K + +K ALLSGPPGIGKTTTA +V KELG+ +E+NAS TRSK + +S KS + K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR K++++ NY DLRF++ LEQ+ + S FKEK+ + + EI+ A+N D+RQ ++I L SA E KS Q + K+ K+GP++VV+KVFT D+ K + KSDLFF DY+L LFVQ+NYL+V P G + +V + ++ AD++++ D+V ++R + W LLP Q ++SV+PGE+M G+ T +INFP WLGK SK K R+ L H R T G + S+ +DY+ LL+ I++PL +EG + L+++ +LLRED+D LVE TSW PL +V ++K ALTR+YNK YS A Sbjct: 197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTNHNLKLKAKQERVKVLHYFNFPRLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 928
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: cutlet (gene:FBgn0015376 transcript:FBtr0077541) HSP 1 Score: 60.077 bits (144), Expect = 1.088e-8 Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K ALL GPPG+GKTT AH +A+ GY V E NAS RS + S + C+V+DEIDG Sbjct: 421 KVALLCGPPGLGKTTLAHTIARHAGYNVREINASDDRSPEAFKLALENGTQMSSVLNEDKRPNCIVLDEIDG 492
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Match: RfC4 (gene:FBgn0260985 transcript:FBtr0073264) HSP 1 Score: 55.8398 bits (133), Expect = 1.022e-7 Identity = 63/247 (25.51%), Postives = 109/247 (44.13%), Query Frame = 3 Query: 1113 SNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GY--TVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKL-QTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSE 1835 ++ +S + +++K++P ++IVG + +LS+ F G A + +++GPPG+GKTTT +A+ L Y V+E NAS R + I + K K +++DE D M+ G L ++ S K+ + I + LRF KL+ Q+ A + EK++ +D L IV + D+RQ +N+Q +T GD+ +E Sbjct: 9 ADDKRSHLPWIEKYRPVKFKEIVGNE---DTVARLSV------------FATQGNAPNI---IIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKI-VILDEADSMT----EGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ---STAQGFGDITAE 229
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]) HSP 1 Score: 511.916 bits (1317), Expect = 8.179e-164 Identity = 320/768 (41.67%), Postives = 462/768 (60.16%), Query Frame = 3 Query: 495 NESLKTPTKETKHEANVTSP----PKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK----PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTN--KKHLS---GKPIVTISNSTK----STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG-------FKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFT---HDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLR----EGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNI 2669 +ES+ + T TK E TSP K AN Y ++LNR GP ALGSK+IP+G CL G FV+TGVLES+ERD+A+SLIER+GG+VT +S KTTYL++G + G SK +KA+ TK INEDEL +IR K I+ KS K + KV + K + P + S K S++ + + KK LS K +S+S S++L+VDK++P++++ ++GQQGD+S A KL WL +W ++ F K G D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +I+ + + S + K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR +K++++ANY DLRF++ +EQ+ A+ S FKE + +P ALNE+++ASN D+RQV HN+ +WSA + M K++A + K+ K+GPFDV +KVF +L KSDLFF DY+L LFVQENYL V P N+ + L+S ADSI D+V ++R+ W LLP Q +YASV+PGE M G ++ NFPSWLGK+S K+ RI+ L H+ T +S+ ++++DY L + +LKPL+ EG ++ +++ ++++ED+D ++E ++W DP S + S++K A TRAYNK + PYS+ KK + + L E + + EE+DDG+ D I Sbjct: 348 SESVPSKTSPTKPEN--TSPDDLEKKRANSSAYRSYLNREGPRALGSKDIPQGEENCLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAESFGTKIINEDELLDLIRTKPGKKSKYEIAAEAENKSSKTRTPDSRGKVASSAKKATPQGPSPNKRSSSGGKSKPGSASKSGARGASCSEVKKSLSFDQTKTASPVSHSAPENDGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQSWHKHHSGNAKAPAPKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFALGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKSHLVLLSKTADSICDGDLVDRQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFSSSGKHSRIIQELASHMSLKT---LSSKEAVNLDYLPYLRSAVLKPLQSLGSEG-ANQSVKLMDDYDIIKEDVDNMMEISTWDGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELLGELDNESQVQEEEEDDGLGADAMI 1109
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: chtf18 (CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-508]) HSP 1 Score: 76.6406 bits (187), Expect = 1.240e-13 Identity = 59/163 (36.20%), Postives = 75/163 (46.01%), Query Frame = 3 Query: 1128 STVLFVDKFKPQTMRQIVGQQ-GDRSPAKKLSLW------------------LSNWAN----NYKLGFK-------KIGEAD-------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 S+ L+VD+F PQ ++ +R K L LW SN+ N N FK +I EA+ FK ALLSGPPG+GKTT AH++AK GY V+E NAS RS I KS + E CL++DEIDG Sbjct: 276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQNQNQAQRFKTKSQMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLIIDEIDG 438
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: chtf18 (CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-508]) HSP 1 Score: 76.6406 bits (187), Expect = 1.261e-13 Identity = 59/163 (36.20%), Postives = 75/163 (46.01%), Query Frame = 3 Query: 1128 STVLFVDKFKPQTMRQIVGQQ-GDRSPAKKLSLW------------------LSNWAN----NYKLGFK-------KIGEAD-------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 S+ L+VD+F PQ ++ +R K L LW SN+ N N FK +I EA+ FK ALLSGPPG+GKTT AH++AK GY V+E NAS RS I KS + E CL++DEIDG Sbjct: 276 SSRLWVDQFSPQHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQNQNQAQRFKTKSQMTEEILEAELDQYKRPKFKVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLIIDEIDG 438
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: atad5a (ATPase family AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]) HSP 1 Score: 57.7658 bits (138), Expect = 8.653e-8 Identity = 38/133 (28.57%), Postives = 63/133 (47.37%), Query Frame = 3 Query: 1095 KPIVTISNST----KSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW--------------------ANNYKLGFKKIGEADHF--KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM 1415 +P V+ + ST K VL+ +K++PQ +I+G + ++L WL W +N+ L + + E + F L++GP G+GKT + A+ELG+ V E N+S RS Q+ Sbjct: 974 EPAVSRNTSTEDGIKEDVLWTEKYQPQHSSEIIG---NMESVRRLHSWLKEWKLRADREERRKQQEKKHEEDSNDSWLMSEDLDETEDFLCNTLLITGPTGVGKTAAVYACAQELGFKVFEVNSSSQRSGRQI 1103
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Match: rfc2 (replication factor C (activator 1) 2 [Source:ZFIN;Acc:ZDB-GENE-050306-29]) HSP 1 Score: 52.373 bits (124), Expect = 2.059e-6 Identity = 55/228 (24.12%), Postives = 102/228 (44.74%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++P + +IVG + S +L + F + G + +++GPPG GKTT+ +A+ L V+E NAS + R+K +M +T K +++DE D M+ + + K ++ + C +D+ ++ I + LR+ KL EQ+ + + KE + V +D L I+ + D+RQ +N+Q Sbjct: 68 WVEKYRPLKLNEIVGNEETVS---RLEV------------FAREGNVPNI---IIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDK---IIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 267
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013]) HSP 1 Score: 488.804 bits (1257), Expect = 3.070e-155 Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3 Query: 447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 SP K QS K+ P ++ +P K K N K Y FLNR GP ALGSKEIP G+ C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT +S KT Y+I+G + G SK +KA+ TK ++ED L +IR K E KKE +K + KE K+P P K TP EK E + L + K +P T + ++L+VDK+KP +++QI+GQQG++S A KL WL+ W N+ K G K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M +++ + + S C S K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR K++++ANY DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + + KS A + K+ K+GPFDVV+KVF+ + TL KSDLFF DY+L LFVQENY+ V P N+ K + L+S AADSI D+V +R+ W LLP Q +YASV+PGE M G + NFPSWLGKYS K RI L +H LR T+ G +L++DY + + +++PL + + ++ ++ L++ED D ++E + W S + ++K A TR YNK PYS+ K Sbjct: 305 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQ--TSKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1033
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013]) HSP 1 Score: 488.034 bits (1255), Expect = 8.090e-155 Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3 Query: 447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 SP K QS K+ P ++ +P K K N K Y FLNR GP ALGSKEIP G+ C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT +S KT Y+I+G + G SK +KA+ TK ++ED L +IR K E KKE +K + KE K+P P K TP EK E + L + K +P T + ++L+VDK+KP +++QI+GQQG++S A KL WL+ W N+ K G K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M +++ + + S C S K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR K++++ANY DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + + KS A + K+ K+GPFDVV+KVF+ + TL KSDLFF DY+L LFVQENY+ V P N+ K + L+S AADSI D+V +R+ W LLP Q +YASV+PGE M G + NFPSWLGKYS K RI L +H LR T+ G +L++DY + + +++PL + + ++ ++ L++ED D ++E + W S + ++K A TR YNK PYS+ K Sbjct: 314 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQT--SKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1042
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013]) HSP 1 Score: 488.419 bits (1256), Expect = 9.889e-155 Identity = 311/752 (41.36%), Postives = 434/752 (57.71%), Query Frame = 3 Query: 447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK--------------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLH--LRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 SP K QS K+ P ++ +P K K N K Y FLNR GP ALGSKEIP G+ C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT +S KT Y+I+G + G SK +KA+ TK ++ED L +IR K E KKE +K + KE K+P P K TP EK E + L + K +P T + ++L+VDK+KP +++QI+GQQG++S A KL WL+ W N+ K G K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M +++ + + S C S K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR K++++ANY DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + + KS A + K+ K+GPFDVV+KVF+ + TL KSDLFF DY+L LFVQENY+ V P N+ K + L+S AADSI D+V +R+ W LLP Q +YASV+PGE M G + NFPSWLGKYS K RI L +H LR T+ G +L++DY + + +++PL + + ++ ++ L++ED D ++E + W S + ++K A TR YNK PYS+ K Sbjct: 338 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLTKKTVTPEKKEQ--TSKKP-SPAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQAVYASVLPGELMRGYMGQFPNFPSWLGKYSSTGKYDRITQELTMHTCLRTRTNKG-----ALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 1066
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013]) HSP 1 Score: 432.565 bits (1111), Expect = 3.674e-135 Identity = 286/742 (38.54%), Postives = 409/742 (55.12%), Query Frame = 3 Query: 447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSK------PISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 SP K QS K+ P ++ +P K K N K Y FLNR GP ALGSKEIP G+ C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT +S KT Y+I+G + G SK +KA+ TK ++ED L +IR K + EP+ +KK EK + K S P K TP EK E + L + K +P T + ++L+VDK+KP +++QI+GQQG++S A KL WL+ W N+ K G K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M +++ + + S C S K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR K++++ANY DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + + KS A + K+ K+GPFDVV+KVF+ + TL KSDLFF DY+L LFVQENY+ V P N+ K + L+S AADSI D+V +R+ W LLP Q +Y + S + T +N +L++DY + + +++PL + + ++ ++ L++ED D ++E + W S + ++K A TR YNK PYS+ K Sbjct: 238 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEEPL-TKKTVTPEKKEQTSKKPS---------PAKRRFTP-EKKESSHKTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQVLY---------------------------------ELFSCFLIFFIPRTR---TNKGALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 918
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Match: pcsk2 (proprotein convertase subtilisin/kexin type 2 [Source:Xenbase;Acc:XB-GENE-960013]) HSP 1 Score: 427.557 bits (1098), Expect = 3.143e-133 Identity = 281/736 (38.18%), Postives = 410/736 (55.71%), Query Frame = 3 Query: 447 SPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSG----KPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY------------KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREG---DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 SP K QS K+ P ++ +P K K N K Y FLNR GP ALGSKEIP G+ C+ G+TFV+TGVLESIERD+A+SL+ER+GG+VT +S KT Y+I+G + G SK +KA+ TK ++ED L +IR K + ++ + K K K+ + K+ + P K+ +T +KPS L + K +P T + ++L+VDK+KP +++QI+GQQG++S A KL WL+ W N+ K G K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ M +++ + + S C S K+ L+MDE+DGM+GNEDRGG+ ELI++IKQSKIPIIC+CNDR K++++ANY DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + + KS A + K+ K+GPFDVV+KVF+ + TL KSDLFF DY+L LFVQENY+ V P N+ K + L+S AADSI D+V +R+ W LLP Q + K + S + T +N +L++DY + + +++PL + + ++ ++ L++ED D ++E + W S + ++K A TR YNK PYS+ K Sbjct: 242 SPKKEQSTPEKS---PQKTGSSPEDSEK---------KRTNYKAYRNFLNREGPKALGSKEIPIGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYIIMGRDAGVSKQEKAEAFGTKILDEDGLLNLIRTLPGKRSKYDIAAAAEAKKAKIKTEKSPDKKEPLT-KKTVTPEKKEQTS----KKPSPTDLNEKVKTKVVKKEPEELEPTTTDGDLQCESLLWVDKYKPTSIKQIIGQQGEQSCANKLMKWLNRWHQNHSSDEKKPAAKLNKFGGKDDGSS--FKAALLSGPPGVGKTTTAVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSGTCKSVSSKHALIMDEVDGMAGNEDRGGMQELITLIKQSKIPIICMCNDRNHSKIRSLANYCFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDEAKSSATNAKKDIKMGPFDVVRKVFSSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNMKKHLLLLSKAADSICDGDLVDRMIRSKQTWSLLPTQVL---------------------------------KELFSCFLIFFIPRTR---TNKGALNLDYLSYVRDVLVRPLHQSGADGVGEVVDFMDNYYLMKEDYDNIMEISCWGGKPSAFSKLDPKVKAAFTRGYNKEAHLTPYSLQMVK 922
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]) HSP 1 Score: 494.967 bits (1273), Expect = 1.791e-157 Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+TFV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK ++ED L +IR K +SK E E ++K ++SK+E K+ I P K+ + P + + + +T + L K +S K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + + F K+ D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +++ + + S S ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ +A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++Q++ K+ ++GPFDV +KVF + +L KSDLFF DY++ LFVQENYL V P ++ K + L+S AADSI D+V ++R+ NW LLP Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ ++ ++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]) HSP 1 Score: 494.967 bits (1273), Expect = 1.863e-157 Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+TFV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK ++ED L +IR K +SK E E ++K ++SK+E K+ I P K+ + P + + + +T + L K +S K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + + F K+ D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +++ + + S S ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ +A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++Q++ K+ ++GPFDV +KVF + +L KSDLFF DY++ LFVQENYL V P ++ K + L+S AADSI D+V ++R+ NW LLP Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ ++ ++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]) HSP 1 Score: 493.812 bits (1270), Expect = 4.892e-157 Identity = 293/718 (40.81%), Postives = 434/718 (60.45%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW----------ANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+TFV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK ++ED L +IR K +SK E E ++K ++SK+E K+ I P K+ + P + + + +T + L K +S K +L+VDK+KP +++ I+GQQGD+S A KL WL NW A KL K G + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +++ + + S S ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ +A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++Q++ K+ ++GPFDV +KVF + +L KSDLFF DY++ LFVQENYL V P ++ K + L+S AADSI D+V ++R+ NW LLP Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ ++ ++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKLASKDDGSS--FKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1071
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]) HSP 1 Score: 493.426 bits (1269), Expect = 1.080e-156 Identity = 291/716 (40.64%), Postives = 433/716 (60.47%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEAD---HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+TFV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK ++ED L +IR K +SK E E ++K ++SK+E K+ I P K+ + P + + + +T + L K +S K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + F K+ D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +++ + + S S ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ +A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++Q++ K+ ++GPFDV +KVF + +L KSDLFF DY++ LFVQENYL V P ++ K + L+S AADSI D+V ++R+ NW LLP Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ ++ ++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 383 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1085
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Match: Rfc1 (replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]) HSP 1 Score: 94.7449 bits (234), Expect = 1.990e-21 Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 2115 LLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 L Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ L++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 2 FLSSQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 157
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35251|RFC1_HUMAN (Replication factor C subunit 1 OS=Homo sapiens OX=9606 GN=RFC1 PE=1 SV=4) HSP 1 Score: 501.901 bits (1291), Expect = 4.734e-159 Identity = 305/744 (40.99%), Postives = 441/744 (59.27%), Query Frame = 3 Query: 507 KTP--TKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKES-----------KTPVEKIEKPSENILYKPTTNKKHLS--------GKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN--------YKLG-FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLRE---GDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFK 2561 KTP TK + + SP S K+ Y ++LNR GP ALGSKEIPKG+ CL G+ FV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK I+ED L +IR K KSK E VE K KESK+E K+ I P K+ + + K K ++ +K K+ ++ + + S+ K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + K G F + FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSKS + I++ + + S S K+ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++ ++ K+ K+GPFDV +KVF + +L KSDLFF DY++ LFVQENY+ V P ++ K + L+S AADSI D+V +++R+ NW LLP Q +YASV+PGE M G +T FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY +L + +++PL ++ + +++ L++ED + ++E +SW P S + ++K A TRAYNK PYS+ A K Sbjct: 352 KTPKKTKSSPAKKESVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPGK--------KSKYEIAVETEMK---KESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDSQIRSKQNWSLLPAQAIYASVLPGELMRGYMTQFPTFPSWLGKHSSTGKHDRIVQDLALHMSLRTY---SSKRTVNMDYLSLLRDALVQPLTSQGVDGVQDVVALMDTYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAIK 1081
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35601|RFC1_MOUSE (Replication factor C subunit 1 OS=Mus musculus OX=10090 GN=Rfc1 PE=1 SV=2) HSP 1 Score: 494.967 bits (1273), Expect = 1.418e-156 Identity = 291/717 (40.59%), Postives = 434/717 (60.53%), Query Frame = 3 Query: 549 SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEH--------KQPIKPIKESKTPVEKI-----EKPSENILYKPTTNKKHLSGKPIVTISNSTK-STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN------YKLGFKKIGEAD---HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS--------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXX---XREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASG 2582 S K N + Y ++LNR GP ALGSKEIPKG+ CL G+TFV+TGVLESIERD+A+SLIER+GG+VT +S KT YL++G + G+SK KA L TK ++ED L +IR K +SK E E ++K ++SK+E K+ I P K+ + P + + + +T + L K +S K +L+VDK+KP +++ I+GQQGD+S A KL WL NW + + F K+ D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +++ + + S S ++ L+MDE+DGM+GNEDRGG+ ELI +IK +KIPIIC+CNDR K++++ +Y DLRF++ +EQ+ +A+ S FKE + +P A+NEI++ +N D+RQV HN+ +W A + K+++Q++ K+ ++GPFDV +KVF + +L KSDLFF DY++ LFVQENYL V P ++ K + L+S AADSI D+V ++R+ NW LLP Q +YASV+PGE M G +T +FPSWLGK+S K+ RI+ L LH+ T+ S+ +++MDY + + +++PL +E +++ ++ ++ED + ++E +SW S + ++K A TRAYNK PYS+ K ++G Sbjct: 369 SEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK--------RSKYEMAAEA--EMKKEKSKLERTPQKNDQGKRKISPAKKESESKKCKLTLLKNSPMKAVKKEASTCPRGLDVKETHGNRSSNKEECLLWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLGKHSSTGKHDRIVQDLSLHMSLRTY---SSKRTVNMDYLSHIRDALVRPLTSQGVEGAQHVIKLMDTYYLMKEDFENIMEVSSWGGKPSAFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKTSRLSTG 1072
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|P35600|RFC1_DROME (Replication factor C subunit 1 OS=Drosophila melanogaster OX=7227 GN=Gnf1 PE=1 SV=2) HSP 1 Score: 458.373 bits (1178), Expect = 2.903e-144 Identity = 292/729 (40.05%), Postives = 418/729 (57.34%), Query Frame = 3 Query: 516 TKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSS-----------------------KPISTNEPIKSKKETEVEKF-----NKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFK--------KIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK--TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVA 2555 T E +HE K A+ Y + NRS + GSKEIPKGSP CLSG+TFVVTGVLES+ER++A+S+I+ +GG+V + K YL++G E G K+ A++LN ++ED LF +IR S K + T+ KKE E K + + + K EH P KE+K + + + + +P++ K+H + + +VDK KP ++++IVGQ G S KL WLS W N+ K K + +K ALLSGPPGIGKTTTA +V KELG+ +E+NAS TRSK + +S KS + K+ L+MDE+DGM+GNEDRGG+ ELI++IK S IPIIC+CNDR K++++ NY DLRF++ LEQ+ + S FKEK+ + + EI+ A+N D+RQ ++I L SA E KS Q + K+ K+GP++VV+KVFT D+ K + KSDLFF DY+L LFVQ+NYL+V P G + +V + ++ AD++++ D+V ++R + W LLP Q ++SV+PGE+M G+ T +INFP WLGK SK K R+ L H R T G + S+ +DY+ LL+ I++PL +EG + L+++ +LLRED+D LVE TSW PL +V ++K ALTR+YNK YS A Sbjct: 197 TDEERHER------KRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPILSEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYGEKHDIAKHKVKEEHTSP----KETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVGMAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE--DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYLQVLPQGNKKDV---LAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHFTGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSG---SRLSVRLDYAPFLLDNIVRPLAKDGQEG-VPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAYSYSAQA 906
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|Q9C587|RFC1_ARATH (Replication factor C subunit 1 OS=Arabidopsis thaliana OX=3702 GN=RFC1 PE=2 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 1.006e-87 Identity = 244/710 (34.37%), Postives = 371/710 (52.25%), Query Frame = 3 Query: 579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVL-FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQ---MPGIISLTRDCKSDC-----------WSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLW--SATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNL-------TDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSN----------FKLPYSIVAFKKGIAA 2576 + F R P G KE+P+G+P CL+G+TFV++G L+S+ER++A+ LI+RHGGR+T ++S KTTYL+ + G K +KA++L TK + ED LF +IR SSKP+ + P +S K TE K+ A P K S E KP L K + K P N T L + +K++P+ +IVG Q S +L WLS+W + + K KK+ +A K LLSG PGIGKTT+A +V++ LG+ +E NAS +R K+ GI + + SK K L+MDE+DGMS DRGG+ +LI+ IK SKIPIICICNDR S+KL+++ NY L L +RK T +QM + E + + + AL E+ N D+R + +Q S + + D++ S K+ I PF V K+F ++ K + ++ DL D +L L +QENYL P G + K M+L++ AA+SIA DI+ ++R W L + +S++P +HG+ + F WLGK S KN+R++ L +H+ S +L +DY +LL+++ PL ++ + ++ +N ++ +ED D ++E + +P+ V +K ALT+ YN+ N +LP A KK IAA Sbjct: 182 FMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIR--SSKPVKKSLPERSNKGTE-----KICA------------PPKTSPQKEETRGKP----LAKSSPKK-----VPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQ---SLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAG-DRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPSG--KDEAKRMDLLARAAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQGERNFNRFGGWLGKNSTAGKNRRLMEDLHVHVLASRESSAGR-ETLRVDYLPLLLSRLTSPLQTLPKDEAVSEVVDFMNSYSISQEDFDTILELGKFKGRENPMEGVPPPVKAALTKKYNEMNKTRMVRVADMVQLPGVKKAPKKRIAA 856
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Match: sp|Q2R2B4|RFC1_ORYSJ (Replication factor C subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC1 PE=2 SV=2) HSP 1 Score: 295.819 bits (756), Expect = 6.714e-84 Identity = 229/685 (33.43%), Postives = 352/685 (51.39%), Query Frame = 3 Query: 579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIE----KPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNY-----KLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM---PGIISLTRDCKSDCWS-----------KELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPF--GCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNL-------TDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAY 2516 + F R P G KE+P+G+P CL+G+TFV++G L+S+ER++A LI+R+GGRVT ++S KT YL+ + G K KA++L + ED LF MIR SKP K K + K KQ P+K S VE+ + +NI K + + + + + ++ + +K++P+ IVG Q S K+L WL +W + + K KK ++ K LLSGPPGIGKTTTA VV++ LG IE NAS +R K+ G+ T + + S K K LVMDE+DGMS DRGG+ +LI+ IK SKIPIICICNDR S+KL+++ NY L L FRK T +QM + KE + ++A+ E+ + D+R +++Q S ++ + D++ S K+ I PF V K+F + + + ++ DL D +L L +QENY+ P G ++ K M ++ AA+SIA +DIV ++R W L + +S++P MHGN + F WLGKYS NKN R+L H+ S + S + +LL ++ PL ++ ++ + ++ +L +ED D +VE + + +P+ + +K ALT+AY Sbjct: 237 FMNFGERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKTNYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRK--SKPA---------------KATVAKHQSDKNSEKQQKSPMKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVD---RGSLQWTEKYRPKVPNDIVGNQ---SMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAG-DRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSSTKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDSGVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGERNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLT-LLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAY 896
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: R7VAU2 (BRCT domain-containing protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_175237 PE=4 SV=1) HSP 1 Score: 523.087 bits (1346), Expect = 1.133e-169 Identity = 295/690 (42.75%), Postives = 432/690 (62.61%), Query Frame = 3 Query: 543 VTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG----FKKIGE-ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIIS--LTRDCKSDCWSKEL------KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPS---SLSMDYSGILLNKILKPL----REGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546 T SA K Y ++L+R GP ALGSKEIP+G+ CL G+TFV+TGVLES+ER ++QSLIER+GG+VT +LS +T+Y+++G + GESK+ KA +L TKQ++ED L +IR K SK E E K ++ K +K + + I +SK K P K G + ++++VDK+KPQT++QI+GQ GD+S A+KL WL NW N G F + + FK ALLSGPPG+GKTTTA +V KE G++ +E NAS TRSK ++ +S L D + ++ ++CLVMDE+DGM+GNEDRGG+ ELI +IK SKIP+IC+CNDR +K++++AN+ DLRF++ +EQ+ AA+ S FKE + + AL E+++A+N D+RQ+ HN+ +W++T+ + KS+A K+ K+ +GPFDV ++VF + ++ K+DLFFQDY+ G LFVQENY PF R ++ M+L+S AADSIA D+V ++R+T NWGLLP Q ++++V+PGE M G++ I FP WLGK S +NKN R L L TH G+ NP+ ++MDY +L + +PL EG I + ++++ +L RED D L+E +W + + +++V S++K A TR YNKS PY+ Sbjct: 2 ATDQASSAKKGAYRSYLSREGPRALGSKEIPQGAENCLEGLTFVITGVLESMERSESQSLIERYGGKVTGSLSKRTSYVVVGRDAGESKMAKANQLGTKQLDEDGLLDLIRKLPGKT--------SKYEIEAAKQSQSKPSTAKFKSSPSLAKISQSKMSSAK-----------PAAKKATDEG---------SSQSLMWVDKYKPQTLKQIIGQTGDKSNARKLMNWLQNWHRNISSGKKPAFNRFSDDGSGFKAALLSGPPGVGKTTTATLVCKEAGFSFVELNASDTRSKRKLKDEVSESLNNHTLVDFFGGQVTPSEGQRHCLVMDEVDGMAGNEDRGGVAELIQLIKNSKIPVICMCNDRNHQKIRSLANHCFDLRFQRPRVEQIKAAMMSVAFKEGLKISPPALQEVIVAANQDVRQIMHNLSMWTSTDRNLSYDQAKSDANKAKKDAHLGPFDVCRQVFAGGERMSVIDKTDLFFQDYSFGPLFVQENYPSCTPFAARGDMRMQMKLLSQAADSIAQGDLVDRQIRSTQNWGLLPTQAIFSTVLPGEAMKGSIGQMIQFPQWLGKNSTRNKNDRTLQEL------RTHMGLKNPADKHEINMDYLPLLRKALTQPLATRGAEG-IGEIIQVMDEYSLTREDFDSLLEVATWPNSKNCMANVDSKVKAAFTRTYNKSVHLTPYA 656
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A2P8ZJY6 (Replication factor C subunit 1 OS=Blattella germanica OX=6973 GN=Gnf1 PE=3 SV=1) HSP 1 Score: 533.102 bits (1372), Expect = 1.024e-168 Identity = 322/747 (43.11%), Postives = 453/747 (60.64%), Query Frame = 3 Query: 579 YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPI-------------STNEPIK-------SKKETEVEKFNKVKAKESKIEHKQPIKPIKES----KTPVEKIEKPSENI-LYKP-----------------------------TTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGE---------ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSK-------SQMPGIISLTRDCKSDCWSKEL-KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSAT--EMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLT--QKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPL-REG--DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGE 2585 Y +L+R GP G KEIP+G P CLSG FV+TGVL++I+RD A S+I+++GG+VT +LS T+Y+++G EPG SKI+KA KL TKQ+ ED L ++RNS S P ST E K SKKE+ V+ +K + K SK E K P + IK S KTP ++++ P + + + KP T+ K++ N +K+ L+VDK+KP +++QI+GQQGDRS KKL WL NW +N+ G KK+ FK ALLSGPPG+GKTTTAH+V KELG+ V+E+NAS TRSK S++ SL+ + +K K+ L+MDE+DGM+GNEDRGG+ ELI +IK S+IPIIC+CNDR K++++ NY DL+F K +EQ+ A+ S FKE I + +ALN+I+ SN D+RQV H++ +WS ++ + +K E++K+ K K+GP+D V+KVF+ D KT++ K DLFF DY+LG LFVQENYL V P + N + +E I+ A+ ++ DIV +R+ N+W LLP+Q MY+SVIPG M G+LT +INFP+W GK SK NK R+ L +H+ S G + SLS+DY + + ++ PL +EG + TL + L+RED+D ++E T W DP+S V S++K ALTRAYNK PYSI+ KKG S + Sbjct: 309 YQKYLHREGPKNPGGKEIPEGKPNCLSGKVFVLTGVLDTIDRDQATSIIKQYGGKVTSSLSRNTSYIVVGDEPGPSKIEKATKLGTKQLTEDGLLDLLRNSHSSPDKKGGTSKKANKKESTKEESKKESTKEESKKESNVKNKHKDEVKTSKEEVKVPKEEIKTSNKEIKTPNKEVKTPKDEMKMNKPPHPLMKTASCNISLFFASEKTKKTTILPTTSQSKNIDVSATNRDENISKNASLWVDKYKPTSVKQIIGQQGDRSNVKKLLKWLGNWHSNHS-GKKKLVRPSPWAKDDFGSFFKAALLSGPPGVGKTTTAHLVCKELGFDVVEFNASDTRSKKLLNEEVSELLSTKSLSGYFEGASGAKPTEKHVLLMDEVDGMAGNEDRGGVQELIQLIKHSRIPIICMCNDRHHPKIRSLTNYCFDLQFSKPRVEQIRGAMLSICFKEGIKIAPEALNDIINGSNHDIRQVLHHLSMWSINDKQLSTEQIKEESEKAKKHIKLGPWDTVKKVFSADAHKTMSISDKMDLFFNDYSLGPLFVQENYLGVQPHKAKGNRNNQLERIAQTAEILSSGDIVEKAIRSKNSWSLLPMQAMYSSVIPGSIMEGHLTTQINFPAWFGKNSKSNKFSRLTQELYMHMSLSISG---SRRSLSLDYLQNIRDALVNPLIKEGADGVPQTLGFMQNYYLMREDLDSVMELTQWPQQKDPMSLVESKVKAALTRAYNKEGIMTPYSIIQVKKGSGKSSQ 1051
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A498N0B2 (Replication factor C subunit 1 OS=Labeo rohita OX=84645 GN=ROHU_036526 PE=3 SV=1) HSP 1 Score: 528.865 bits (1361), Expect = 1.357e-167 Identity = 321/767 (41.85%), Postives = 456/767 (59.45%), Query Frame = 3 Query: 519 KETKHEANVTSPP----KSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKES---------KTPVEKIEKP-----SENILYKPTTNKKHLS---GKPIVTISNSTK----STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXX---REDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNI 2669 +E K + TSP K AN Y +LNR GP ALGSKEIP+G+ CL G FV+TGVLES+ERDDA+SLIER+GG+VT +S KTTYL++G + G SK +KA+ L TK INEDEL ++IR K KSK E E NK + + +P P K++ + P KP S + + KK LS K +S+ST S++L+VDK++P++++ ++GQQGD+S A KL WL NW ++ F K G D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRSK+ + +I+ + + S + K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR +K++++ANY DLRF++ +EQ+ A+ S FKE + +P ALNE+++ASN D+RQ+ HN+ +WSA + M K++A + K+ K+GPFDV +KVF + +L KSDLFF DY+L LFVQENYL V P N+ + L+S ADSI D+V ++R+ W LLP Q +YASV+PGE M G ++ FPSWLGK+S K+ RI+ L H+ T +S+ ++++DY L + IL+PL+ E + ++ +ED+D ++E ++W DP S + S++K A TRAYNK + PYS+ KK + + L E + + EE+DDG+ D I Sbjct: 298 EEQKKKDKNTSPEDLEKKRANSSAYRNYLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESLGTKIINEDELLELIRTKPGK--------KSKYEIAAEAENKSSKTRTPVSKGKPTTPSKKATPQGPSPNKRIPSAGKSKPGSASKSRTLGASRSEVKKSLSFDQSKSTSPVSHSTPESEGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQNWYKHHSGNTKAPLAKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQILHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKHSRIIQELASHMSLKT---LSSREAINLDYLPYLRSAILEPLQSQGAEGASQSVKLMDDYNIIKEDVDNMMEISTWGAQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELIGELDGESQVQEEEEDDGVTADAMI 1053
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A5J4NTZ1 (Replication factor C subunit 1 OS=Paragonimus westermani OX=34504 GN=DEA37_0004797 PE=3 SV=1) HSP 1 Score: 523.087 bits (1346), Expect = 2.804e-166 Identity = 307/754 (40.72%), Postives = 443/754 (58.75%), Query Frame = 3 Query: 504 LKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETE-VEKFNKVKAKESKIEHKQPIKPIKES-----KTPVEKIEK------------------------PSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIG--------------EADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIIS----LTRDCKSDCWS----KELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHD-------KVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRT--TNNWGLLPLQGMYASVIPGEYMH-----GNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567 L TP +T+ T+P ++K + A+ R GP ALGSK IPKG+PTCL G FV+TGVLESIERDDA+ LIER GG++ K KT YL++G EPGESK+ KA+ +TKQ++ED LF +IR +++P+ + E + S TE K S ++ PI +E+ TPV++ K PS PT + H P+ + SN +L+V+K+KP + R ++GQ G SPA +L WLS W ++ G K + + ALLSGPPGIGKT++A +V ELG+ E NAS RSK + IS +T + C ++ L+MDE+DGM+GNEDRGG+ ELI++IK ++IPIIC+CNDRQS K++++ANY LDLRF + +EQ+ AA+ S KE +++P L +I+ ASN D+RQV +++Q+W ++ D S + + K+ ++ FDVV+KVFT D V T+ DLFFQDYNL LFVQENY+ V P NV+KT++L+S A+D I++ D+V +R+ T W LLP+QG+++ V PG + G ++FPSW GKYS Q + R+ + L HL +TH +NP +L+MDY+ +L + +PL+EGD++T LN L + L RED+D ++E TSWS+ + + + S++K ALTRA+NKS LPY+ A KG Sbjct: 189 LHTPKVDTE-----TTPHTPISRKPFWAYQARDGPRALGSKPIPKGNPTCLKGKYFVITGVLESIERDDARELIERCGGKLLKTFGKKTDYLVVGREPGESKLAKAEAAHTKQLDEDGLFALIRELANEPLPSTEDVVSSANTERAPGLTKASPMSSPVKPSNPITGSRETVTSRKSTPVKRSAKSDTCLTAKPVVVSSSTLSNHSSATPSAPKSADPTKSDGHCGPSPVRSPSN-----LLWVEKYKPTSRRSLIGQTGPNSPANRLYEWLSAWHGHFSAGTKAHAYSSAPPWASGNTGDDGKWARAALLSGPPGIGKTSSASIVCAELGFATCELNASDCRSKRSLQEEISQALAMTNLAQMACGEISRLSTKQHVLIMDEVDGMAGNEDRGGIQELINMIKSTRIPIICMCNDRQSPKVRSLANYCLDLRFHRPRVEQIKAAMLSVTCKENVTIPATVLADIIQASNQDIRQVINSVQMWCSSPTDLILPASSSTGTLKDLRLSAFDVVRKVFTPDVSGGMNGGVATVNDSLDLFFQDYNLMPLFVQENYVNVKPRAAEGNVNKTLDLLSKASDDISLGDLVSGAIRSVGTGAWSLLPVQGIFSVVRPGRILRGPLPGGGPGGGVSFPSWFGKYSNQGRMSRVYTELAHHLSLATHASSANPRNLTMDYAAVLAELLTRPLKEGDVDTVLNTLIRYQLQREDLDSILELTSWSNRPNRMLGIDSKVKAALTRAFNKSAHLLPYATAAITKG 932
BLAST of Replication factor C subunit 1 vs. TrEMBL
Match: A0A4W4EN98 (Replication factor C subunit 1 OS=Electrophorus electricus OX=8005 PE=3 SV=1) HSP 1 Score: 521.931 bits (1343), Expect = 1.743e-165 Identity = 324/767 (42.24%), Postives = 453/767 (59.06%), Query Frame = 3 Query: 393 TEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPP----KSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEK------------FNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLS-GKP-IVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG------FKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGII--SLTRDCKSDCWSKEL-----KYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXX---REDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567 T+ KAKSDS Q V +S L +++ + A E + K+ K VTSP K N Y ++LNR GP ALGSKEIP+G CL G FV+TGVLES+ER+DA+SLIER+GG+VT +S KTTYL++G + G SK +KA TK +NEDEL +IR K KSK E E F + K + K P + TP+ P+ KK LS GK V+ SN ++L+VDK++P++++ ++GQQG++S A KL WL +W +++ F K G D FK ALLSGPPG+GKTTTA +V +ELGY+ +E NAS TRS++ + +I SL + +S K+ L+MDE+DGM+GNEDRGG+ ELI +IKQSKIPIIC+CNDR +K++++ANY DLRF++ +EQ+ A+ S FKE + VP ALNEI++A+N D+RQV HN+ +W+AT+ M K++A+ + K+ K+GPFDV +KVFT + +L KSDLFF DY+L LFVQENY+ V P N+ + L+S ADSI D+V ++R+ W LLP Q +YASV+PGE M G + FPSWLGK S NK+ RI+ L H+ T + + ++++DY L + +L PL+ E T + ++ +ED D ++E +SW DP S + S++K A TRAYN+ + PYSI KKG Sbjct: 231 TKAKAKSDSPKQSLVRASSKL---ALLKRRAD--KEEERKKNKQEKKGKMVTSPEDSEKKRVNSAAYRSYLNREGPRALGSKEIPQGEENCLEGCVFVLTGVLESMEREDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAHSFGTKILNEDELLDLIRTKPGK--------KSKYEIAAEAEQLFYKGHLPTLFQNKRTKSQTLGSKGKATPPRLKHTPL------------GPSPAKKSLSAGKTRAVSTSNGDTCSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQHWHKHHRGDTKTAPRFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASSTRSRTSLKEVIAESLNNTSIKNFYSGTSQTVSDKHVLIMDEVDGMAGNEDRGGIQELIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGLKVPPPALNEIILATNQDIRQVLHNLSMWTATDKVMTYDQAKADAKNARKDMKMGPFDVCRKVFTSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNYLVLLSKTADSICDGDLVDKQIRSKQTWSLLPTQAIYASVLPGELMRGYMGQFPTFPSWLGKNSATNKHSRIVQELASHMGLKT---LCSKDAVNLDYLPYLRSALLVPLQSHGAEGTSQTVKLMDDYDIIKEDFDSIIEISSWGGQPDPYSRLDSKVKAAFTRAYNRESHLTPYSIQMVKKG 969
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]) HSP 1 Score: 504.597 bits (1298), Expect = 2.665e-161 Identity = 312/745 (41.88%), Postives = 447/745 (60.00%), Query Frame = 3 Query: 474 NKTAHLPNESLKTPTKETKHEANVT-SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE---KFNKVKAKESKIEHKQP----IKPIKESKTPVEKIEKPSENILYKPTTNKKHLS----------GK---PIVTISNSTKST-VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIE---TTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567 +K+ P + T T TK E + S K N + +LNR GP ALGSKEIP+G+ CL G FV+TGVLES+ERDDA+SLIER+GG+VT +S KTTYL++G + G SK +KAQ TK +NEDEL ++IR K KSK E E K K K+ K+ ++P P K S +P K +P P+ + + S GK P+ + T +L+VDK++P++++ ++GQQG++S A KL WL NW ++ F K G D FK ALLSGPPG+GKTTTA +V +E+GY+ +E NAS TRSK+ + +I+ + + S + K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR +K++++ANY DLRF++ ++Q+ A+ S FKE + +P ALNEI++ASN D+RQV HN+ +WSAT+ M K++A K+ K+ K+GPFDV +KVF + TL KSDLFF DY+L LFVQENY+ V P N+ + L+S ADSI D+V ++R+ W LLP Q +YASV+PGE M G ++ FPSWLGK+S K+ RI+ L H+ T +S+ ++++DY L +L+PL+ E ++ +++ +++ED D ++E +SW DP S + S++K + TRAYNK PYS+ KKG Sbjct: 334 SKSISTPKSAGSTKTSPTKPEVSPEGSEKKRVNSAAFRNYLNRDGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAQSFGTKILNEDELLELIRTKPGK--------KSKYEIAAEAECKATKTKSPSQKLTSQRPSGTKTSPAKSSPSP--KKTRPGSASTPGPSGSSRRDSAPEVKKSLEFGKASPPVPRPAGEENGTSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQNWHKHHSGNTKPAAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEEVGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGTSQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVDQIKGAMMSIAFKEGVKIPPPALNEIILASNQDIRQVMHNLCMWSATDKVMTYDQAKADASKAKKDMKLGPFDVCRKVFVSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHHRIIQELASHMSLKT---LSSKEAVNLDYLPYLRTALLEPLQSQGSEGANKSVTLMDDYAIIKEDFDNIMEISSWGGQPDPYSKLDSKVKASFTRAYNKETHLTPYSLQTVKKG 1065
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]) HSP 1 Score: 504.597 bits (1298), Expect = 1.226e-160 Identity = 312/745 (41.88%), Postives = 447/745 (60.00%), Query Frame = 3 Query: 474 NKTAHLPNESLKTPTKETKHEANVT-SPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVE---KFNKVKAKESKIEHKQP----IKPIKESKTPVEKIEKPSENILYKPTTNKKHLS----------GK---PIVTISNSTKST-VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK-------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-------DCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIE---TTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKG 2567 +K+ P + T T TK E + S K N + +LNR GP ALGSKEIP+G+ CL G FV+TGVLES+ERDDA+SLIER+GG+VT +S KTTYL++G + G SK +KAQ TK +NEDEL ++IR K KSK E E K K K+ K+ ++P P K S +P K +P P+ + + S GK P+ + T +L+VDK++P++++ ++GQQG++S A KL WL NW ++ F K G D FK ALLSGPPG+GKTTTA +V +E+GY+ +E NAS TRSK+ + +I+ + + S + K+ L+MDE+DGM+GNEDRGG+ E+I +IKQSKIPIIC+CNDR +K++++ANY DLRF++ ++Q+ A+ S FKE + +P ALNEI++ASN D+RQV HN+ +WSAT+ M K++A K+ K+ K+GPFDV +KVF + TL KSDLFF DY+L LFVQENY+ V P N+ + L+S ADSI D+V ++R+ W LLP Q +YASV+PGE M G ++ FPSWLGK+S K+ RI+ L H+ T +S+ ++++DY L +L+PL+ E ++ +++ +++ED D ++E +SW DP S + S++K + TRAYNK PYS+ KKG Sbjct: 399 SKSISTPKSAGSTKTSPTKPEVSPEGSEKKRVNSAAFRNYLNRDGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAQSFGTKILNEDELLELIRTKPGK--------KSKYEIAAEAECKATKTKSPSQKLTSQRPSGTKTSPAKSSPSP--KKTRPGSASTPGPSGSSRRDSAPEVKKSLEFGKASPPVPRPAGEENGTSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLQNWHKHHSGNTKPAAARFGKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEEVGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYTGTSQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCFDLRFQRPRVDQIKGAMMSIAFKEGVKIPPPALNEIILASNQDIRQVMHNLCMWSATDKVMTYDQAKADASKAKKDMKLGPFDVCRKVFVSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHHRIIQELASHMSLKT---LSSKEAVNLDYLPYLRTALLEPLQSQGSEGANKSVTLMDDYAIIKEDFDNIMEISSWGGQPDPYSKLDSKVKASFTRAYNKETHLTPYSLQTVKKG 1130
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000018920.2 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856]) HSP 1 Score: 73.559 bits (179), Expect = 7.763e-13 Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3 Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 +K ALLSGPPG+GKTT AH++A+ GY V+E NAS RS I KS + E CLV+DEIDG Sbjct: 362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000050361.1 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856]) HSP 1 Score: 73.1738 bits (178), Expect = 9.079e-13 Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3 Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 +K ALLSGPPG+GKTT AH++A+ GY V+E NAS RS I KS + E CLV+DEIDG Sbjct: 362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000055823.1 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:103034856]) HSP 1 Score: 73.1738 bits (178), Expect = 1.044e-12 Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 3 Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 +K ALLSGPPG+GKTT AH++A+ GY V+E NAS RS I KS + E CLV+DEIDG Sbjct: 362 YKVALLSGPPGLGKTTLAHIIARHAGYNVVEINASDDRSAELFQKRIDTATQMKSVLGANEKPNCLVIDEIDG 434
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: rfc1 (replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]) HSP 1 Score: 496.508 bits (1277), Expect = 2.019e-159 Identity = 289/722 (40.03%), Postives = 437/722 (60.53%), Query Frame = 3 Query: 558 KSANKKNYHAFLNRSGPVALGSKEIP--KGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNK---VKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKH-----------LSGKPIVTISNSTK---------STVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYK------------LGFKKIGEADH---FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPG-IISLTRDCK-------SDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLR----EGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIV 2552 K N Y +L+R GP ALGSKEIP KG CL G+TFV+TGVLES+ER++A+SL+ER+GG+VT +S +T YL++G +PG SK+ KA+ KQ++ED L ++IR K + I ++ E ++ K + K K P KP KE+ ++ + L+ ++ ++G+ + S + ++L+VD+++PQ+++ I+GQQGD+SPA KL WL W +N+ +G + G D K ALLSGPPG+GKTTTA +V +ELG + +E NAS RSK+ M + + R+ S + ++ L+MDE+DGM+GNEDRGG+ ELI++IKQSK+P+IC+CNDR K++++ANY DLRF + +EQ+ A+ S FKE + +P A+ EI++A+N D+RQV HN+ +WSA E + KS+A + K+ K+GPFDV +KVF D+ +L KSDLFF DY++ LFVQENY+ V P N+ K + L+S ADSIA D++ ++R+ +WGLLP Q ++ASVIPGE M G ++ +FPSWLG++S KN RIL L +H+ TH + +++++Y G L N++ +PL+ EG + TL++++ L +ED+D L+E +S+ DPL+ + ++K A TRAYNK + PYS+ Sbjct: 283 KRQNVAAYRHYLSRDGPRALGSKEIPQPKGGENCLEGLTFVITGVLESLEREEARSLVERYGGKVTGNVSKRTDYLVVGRDPGNSKLDKAESCRVKQVDEDGLLELIRTRPGK--KSKYTIAAETEDKLTKTSPEKPTKTSPDKPTSTSPDKPTKEAGG-TDRTSTVTRKQLFSAVEQQRRTERTETGWAGRVTGRGPSAETRSPRKGSGPEVGGDSLLWVDRYRPQSLKNIIGQQGDQSPANKLLRWLRAWHSNHGGGSGGGRKAAPSVGRFRFGGKDDGSGLKAALLSGPPGVGKTTTAALVCQELGLSFVELNASDRRSKNSMKNEVATCLRNTSIEGFYHGSTAQTVSDRHVLLMDEVDGMAGNEDRGGIMELIALIKQSKVPVICMCNDRNHPKIRSLANYCFDLRFPRPRVEQIKGAMMSVAFKEGLKIPPAAMQEIILAANQDIRQVLHNLCVWSAREKALTYDQAKSDATSAKKDLKMGPFDVARKVFIADEETERMSLIDKSDLFFHDYSIAPLFVQENYVHVRPLAAGGNMKKHLTLLSKTADSIAQGDLIDRQIRSNQSWGLLPTQAIFASVIPGELMRGYMSQFPSFPSWLGRHSTTGKNARILQELTMHMSLRTH---ACQRAVNLEYLGALRNELARPLQTWGSEG-VAQTLSLMDDYCLTKEDVDSLMEVSSYHGSTDPLAKLDPKVKAAFTRAYNKESHLTPYSLA 997
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001756.1 (pep scaffold:Pmarinus_7.0:GL477670:316882:341361:1 gene:ENSPMAG00000001571.1 transcript:ENSPMAT00000001756.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.4774 bits (171), Expect = 1.399e-12 Identity = 54/167 (32.34%), Postives = 69/167 (41.32%), Query Frame = 3 Query: 1122 TKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW-----------------ANNYKLGFKKIGEAD----------------------HFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 TKST L+VD+F P+ +++ D + L WL W A +LG A+ +K LL GPPG+GKTT AHVVA GY V+E NAS RS I KS + E CLV+DE+DG Sbjct: 274 TKSTGLWVDRFTPRHYTELLS---DDYMNRCLLKWLKLWDMVVFGRERKKKPPPVTAMPCRLGLVLCSGANWKSKAQITEDILEDELDAHNRPKYKVVLLCGPPGLGKTTLAHVVAHHAGYNVVEMNASDDRSPEVFRTRIEAATQMKSVLGASERPNCLVIDEVDG 437
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: rfc5 (replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]) HSP 1 Score: 52.373 bits (124), Expect = 2.363e-7 Identity = 55/226 (24.34%), Postives = 99/226 (43.81%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL------GYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGM---SGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++P+ + +++ + + +K I E D L GPPG GKT+T A++L V+E NAS R + G I L+ + K K +++DE D M + N R G + K ++ C+ + SR + + + RF L+ + M + + +E++ V DD +N +V SN D+R+ + +Q Sbjct: 11 WVEKYRPRVLDELISHKDILTTIQKF-----------------ISE-DRLPHLLFYGPPGTGKTSTILACARQLYGEKEAASMVLELNASDDRGIDVVRGPI-LSFASTRTIFKKGYKL-VILDEADAMTQDAQNALRRGFHPPAVMEKFTENTRFCLICNYLSRIIPALQSRCTRFRFGPLSSDLMVPRLLHVIAEEQVDVTDDGMNALVTLSNGDMRRALNMLQ 216
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008618.1 (pep scaffold:Pmarinus_7.0:GL477502:54132:62470:-1 gene:ENSPMAG00000007794.1 transcript:ENSPMAT00000008618.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.521 bits (114), Expect = 4.384e-6 Identity = 52/228 (22.81%), Postives = 98/228 (42.98%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++P +++IVG + +L + F + G + A GPPG GKTT+ +A+ L V+E NAS + R+K +M +T + +++DE D M+ + + K ++ + C +D+ ++ I + LR+ +LT Q+ + + E + DD L I+ + D+RQ +N+Q Sbjct: 50 WVEKYRPLKLKEIVGNE---ETVSRLEV------------FAREGNVPNIIIAECQGPPGTGKTTSILCLARALLGPAVRDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKSTRFALACNASDK---IIEPIQSRCAVLRYSRLTDSQVLSRLLEVCDHECVQRTDDGLEAIIFTAQGDMRQALNNLQ 252
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC1 (Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon [Source:SGD;Acc:S000005743]) HSP 1 Score: 272.707 bits (696), Expect = 1.683e-78 Identity = 198/656 (30.18%), Postives = 341/656 (51.98%), Query Frame = 3 Query: 630 IPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGE--ADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM-PGI------ISLTRDCKSDCWSKELK---YCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNI--QLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVF-------THDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNN-WGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKP-LREG--DIETTXXXXXXXXXXREDIDLLVEATSWSHLGDP-LSSVSSQIKGALTRAYN 2519 P+G P CL G+T V TGVL ++ER +++L +R+G RVTK++S KT+ +++G E G K++K ++L K I+E+ Q+I P + EK + K+E + I KE++ V+K E+ S+ L + HL +V + L+ K+ P ++Q+ G +G KL WL+NW N+ K FK G+ + F+ A+L GPPGIGKTT AH+VA+ELGY ++E NAS RSK+ + G+ +S+ K + ++ L + ++MDE+DGMSG DRGG+ +L +++ P+I ICN+R K++ LD++FR+ + + + + +EK + + ++ ++ + D+RQV + + + ++ ++ ++ K + PFD+ K+ + TL K L+F D++ L +QENYL P + +E ++ AA+ I++ DIV K+R++ W LLPL + +SV P + G++ RINF +WLG+ SK K R+L + H R T ++ L +DY ++L P L++G I + + +++ L +ED D ++E + + + + +K TR YN Sbjct: 150 FPEGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLEKIKQLKIKAIDEEGFKQLI---------AGMPAEGGDGEAAEKARR------KLEEQHNI-ATKEAELLVKKEEERSKK-LAATRVSGGHLERDNVVREEDK-----LWTVKYAPTNLQQVCGNKGS---VMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG-DRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPG-QSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTS---TDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGFTRKYN 775
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: CTF18 (Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint [Source:SGD;Acc:S000004683]) HSP 1 Score: 65.4698 bits (158), Expect = 2.685e-11 Identity = 89/360 (24.72%), Postives = 146/360 (40.56%), Query Frame = 3 Query: 1110 ISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANN-YKLGFKKIG--------EADHFKGA-----LLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQM-PGIISLTRDCKSDCWSKELKYCLVMDEIDG------------MSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKS------------AMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGD---------LKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYN-----------LGGLFVQENYLKVAPFGCR 2012 I+ S L+V+K++P+ +VG + +++ WL W +K K+ E D K LL GPPGIGKT+ AHV+AK+ G++V E NAS R+ + I +L + D CLV DEIDG + ++ + L + + +R + I N L KL AVK KE +++P A+N+++ + D+R +N+Q A+ +DS D K+ S+K+ I F +V ++F D + + ++ F++ N L G F Y+K + G R Sbjct: 106 ITGKIGSDTLWVEKWRPKKFLDLVGNE---KTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPLKRPPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERAGPMVKEKIYNLLFNHTFDT----NPVCLVADEIDGSIESGFIRILVDIMQSDIKATNKLLYGQPDKKDKKRKKKRSKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRNCINNLQFL-ASNVDSRDSSASDKPACAKNTWASSNKDSPISWFKIVNQLFRKDPHRDIKEQ---FYELLNQVELNGNSDRILQGCFNIFPYVKYSDNGIR 454
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC4 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005454]) HSP 1 Score: 53.9138 bits (128), Expect = 5.511e-8 Identity = 57/231 (24.68%), Postives = 97/231 (41.99%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQG--DRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GYT--VIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKY------CLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRK-LQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++PQ + IVG + DR ++I + + ++SG PGIGKTT+ H +A EL Y V+E NAS R I + R+ K+L +++DE D M+ G L ++ QS K ++ + + LR+ KL+ E + + + E + +D L I+ + D+RQ +N+Q Sbjct: 11 WVEKYRPQVLSDIVGNKETIDR--------------------LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG-------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Match: RFC3 (Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005234]) HSP 1 Score: 52.373 bits (124), Expect = 1.990e-7 Identity = 64/254 (25.20%), Postives = 113/254 (44.49%), Query Frame = 3 Query: 1122 TKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL---GYT--VIEYNASITRS----KSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDL-----------RFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGD 1823 +K + +V+K++P+T+ ++ GQ + +K F G+ H L GPPG GKT+T +A+E+ Y+ V+E NAS R ++Q+ S TR +SK K +++DE D M+ N + L +I ++ + +ANY L RF+ L E + + + + EK+ + +A ++ SN D+R+V + +Q AT +D+ D Sbjct: 9 SKENLPWVEKYRPETLDEVYGQNEVITTVRK---------------FVDEGKLPHL---LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS-TRQI----FSKGFKL-IILDEADAMT-NAAQNALRRVIERYT-------------KNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT-LDNPD 223
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO32627 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUL3]) HSP 1 Score: 489.96 bits (1260), Expect = 4.970e-160 Identity = 298/723 (41.22%), Postives = 439/723 (60.72%), Query Frame = 3 Query: 507 KTPTKETKHEANVTSPPKSANKKN-YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHK-----------QPIKPIKESKT--PVEKIEKPSENILY----KPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG------FKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKS-DCW-------SKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFT-HDKVK-TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGD-------IETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546 +TP K K E + +P KK+ Y +F++R GP ALGSKEIP+G+ C G+TFVVTGVL+SIERD AQ LI+R+GG+VT ++S KT+YL++G + G SK+ KAQ L TKQ++ED +IRN+ K +P K+ + K +K ++ + + + P+ ++ T P+ + S +LY K N LS N +++VDK+KP ++QI+GQQGD+S +KL W+ NW N F K + K ALLSGPPG+GKTTTA +V +ELGY+ +E NAS RSK + ++S + KS D + LK+ L+MDE+DGM+G+EDRGG+ ELIS+IK SKIPIIC+CNDR S+K++++ANY DLRF + +EQ+ A+ S +KE I +P A+++I+ +N D+RQV HN+ +W+AT + K EA + K+ K+GPFD ++K+ + D K +L KSDLFF DY+L LFVQENYL V+P ++ KT++L+S ADSI D+V ++R+ ++W LLP+Q M ++VIP ++ G + RI+FP WLGK SKQ + RIL L H+R ST ++ SS++++Y L + PL + D + + +++L+ NL RED D ++EA + DP+ S+ S+ K A TR YNK K PY+ Sbjct: 6 RTPEK-IKQEETIATPSSLEKKKSGYRSFMSREGPKALGSKEIPQGAENCFEGLTFVVTGVLDSIERDHAQDLIQRYGGKVTGSVSKKTSYLLVGRDAGASKLSKAQTLGTKQLDEDAFLDLIRNTPGKKSKHEQPDTPSKQPKKAKPSKQQSPTASSQDQAGNSQQTASQSSTSSPLTQTPTGSPISLVY--SACVLYTLLNKVAPNIYSLS-------KNLQYLYLMWVDKYKPSGIKQIIGQQGDKSNMRKLLNWVRNWHKNRTKTLPKSSFFNKDTDGASLKAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSKKTLEQVVSESLSNKSMDAFVGSNLAAKSGLKHVLLMDEVDGMAGSEDRGGMQELISLIKTSKIPIICMCNDRNSQKIRSLANYCFDLRFSRPRVEQIKGAMMSIAYKEGIKIPPPAMDQIIQGANQDIRQVLHNMSMWTATNKTLTYDQAKQEASNAQKDIKLGPFDAIRKLLSGSDSSKLSLKDKSDLFFCDYSLMPLFVQENYLMVSPSQASGDLKKTLDLVSRTADSICDGDLVSRQIRSNSSWSLLPMQAMLSAVIPSYFISGGMGQRIDFPQWLGKNSKQGRLDRILQELQAHMRISTS---ADKSSINLEYIPHLRQALTTPLTDQDPPDLKERVASVISLLDAYNLTREDWDSVMEAGLFDGHRDPMDSIPSKTKSAFTRTYNKEQHKTPYA 715
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO28676 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T5T5]) HSP 1 Score: 105.531 bits (262), Expect = 7.426e-24 Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 3 Query: 1986 LKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYS 2546 L V+P ++ KT++L+S ADSI D+V ++R+ ++W LLP+Q M ++VIP ++ G + RI+FP WLGK SKQ + RIL L H+R ST ++ SS++++Y L + PL + Q K A TR YNK K PY+ Sbjct: 222 LMVSPSQASGDLKKTLDLVSRTADSICDGDLVSRQIRSNSSWSLLPMQAMLSAVIPSYFISGGMGQRIDFPQWLGKNSKQGRLDRILQELQAHMRISTS---ADKSSINLEYIPHLRQALTTPLTD-----------------------------------------QTKSAFTRTYNKEQHKTPYA 364 HSP 2 Score: 98.2117 bits (243), Expect = 1.436e-21 Identity = 84/251 (33.47%), Postives = 114/251 (45.42%), Query Frame = 3 Query: 822 QKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCK-------SDCWSK------ELKYCLVMDEIDGMSGNEDRGGL 1535 Q L TKQ++ED +IRN+ K K +H+QP P K+ K KPS+ PT + + +G T S S+ S+ L Q SP K S F K + K ALLSGPPG+GKTTTA +V +ELGY+ +E NAS RSK + ++S + K S+C SK LK+ L+MDE+DGM+G+EDRGG+ Sbjct: 2 QTLGTKQLDEDAFLDLIRNTPGK---------------------------KSKHEQPDTPSKQPKK-----AKPSKQ--QSPTASSQDQAGNSQQTASQSSTSSPLT--------------QTPTGSPVVKASF------------FNKDTDGASLKAALLSGPPGVGKTTTATLVCQELGYSYVEMNASDARSKKTLEQVVSESLSNKSMDAFVGSNCASKGVAAKSGLKHVLLMDEVDGMAGSEDRGGM 192
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO48429 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJV2]) HSP 1 Score: 70.0922 bits (170), Expect = 2.363e-12 Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 3 Query: 1290 KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 K ALL GPPG+GKTT AHV+A+ GY V+E NAS R+ I + KS + E CLV+DEIDG Sbjct: 107 KVALLCGPPGLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSVLGANERPNCLVIDEIDG 178
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Match: EDO39385 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SA25]) HSP 1 Score: 50.8322 bits (120), Expect = 1.913e-6 Identity = 60/275 (21.82%), Postives = 117/275 (42.55%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-GYT----VIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ--LWSATEMDSGDLKSEAQKSH--------KEFKIGPFDVVQKVFTH 1901 +V+K++P + +IVG + +L ++ + + +++GPPG GKTT+ +A+ L G + V+E NAS + R+K +M +T K +++DE D M+ + + K ++ + C +D+ ++ I + LR+ +LT Q+ + KE++ DD L I+ + D+RQ +N+Q + ++S ++ + H K +G D KV +H Sbjct: 55 WVEKYRPTKLHEIVGNE---ETVSRLEVF---------------AQQGNVPNIIIAGPPGTGKTTSILCLARALLGVSLKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDK---IIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAIIFTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKEMLKSCSVGDIDEAYKVLSH 301
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc1 (replication factor C subunit 1 [Source:NCBI gene;Acc:101171387]) HSP 1 Score: 512.301 bits (1318), Expect = 7.060e-164 Identity = 317/750 (42.27%), Postives = 449/750 (59.87%), Query Frame = 3 Query: 501 SLKTPTKETKHEANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHK-QPIKPIK-ESKTP-------VEKIEKPSENILYKPTTNKKHL------------SGKPIVTISNSTKS--TVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG--------FKKIGEADH--FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRD-------CKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPL 2594 +LKT K K E+ TSP S KK + FLNR GP ALGSKEIPKG+ CL G FV+TGVLES+ER+DA+SLIER+GG+VT +S KTTYL+ G + G SK++KA+ L T+ ++ED L ++IR K S E I ++ E + K ++ SK K Q I P K S++P + ++ SE P H S P V S+ T ++L+VDK++PQ+++ ++GQQG++S A KL WL NW N+ G F K G+ D +K ALLSGPPG+GKTTTA +V +ELG++ +E NAS TRSK+ + ++S + + K + ++ L+MDE+DGM+GNEDRGG+ ELI +I+ SKIPIIC+CNDR K+++++NY DLRF++ +EQ+ A+ S +KE + +P ALNEI++ASN D+RQV HN+ +WSA + M KS+A ++ K+ K+GPFDV +KVFT + +L KSDLFF DY+L LFVQENY+ V P ++ + L+S ADSI+ D+V K+R+ NW LLP Q +YASV+PGE M G +T FPSWLGK S +K+ RI+ L H+ T G + +L++DY L +L PL+ E + L+++D+D ++E + W DP S + S++K A TRAYNK PYS+ KKG GE+ L Sbjct: 355 ALKTSPK--KPESTSTSPDDSEKKKAHTLAFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLESMEREDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGKK-SVYE-IAAEAECKATKTKTPPSQASKNTPKTQKISPSKGNSRSPHTPSPSKTGRAQRSSEGST-PPGRGAAHTARRELGLSPSTSSSAPKVASSSGTAEGPSLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQNWYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVSESLNNTSIEDFYKGTSQTVSSRHVLIMDEVDGMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPRVEQIKGAMMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKDMKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKSHLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMTHFPVFPSWLGKNSSTSKHSRIMQELSSHMSLKTMG---SRQALNLDYLPFLRLALLAPLQRLGAEGAGQAVKLLDDYQLVKDDVDSIMEVSVWGGRPDPFSKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKGRRGGGETDL 1096
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc1 (replication factor C subunit 1 [Source:NCBI gene;Acc:101171387]) HSP 1 Score: 509.605 bits (1311), Expect = 2.060e-163 Identity = 305/728 (41.90%), Postives = 435/728 (59.75%), Query Frame = 3 Query: 534 EANVTSPPKSANKKN----YHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPIS---TNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIK-----ESKTPVEK--IEKPSENILYKPTTNKKHLSGKPIVTISNSTKS--TVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLG--------FKKIGEADH--FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRD-------CKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATE--MDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK---TLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXX---XXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPL 2594 ++ TSP S KK + FLNR GP ALGSKEIPKG+ CL G FV+TGVLES+ER+DA+SLIER+GG+VT +S KTTYL+ G + G SK++KA+ L T+ ++ED L ++IR K E SK + +K + K P K + E TP + + P+T+ S P V S+ T ++L+VDK++PQ+++ ++GQQG++S A KL WL NW N+ G F K G+ D +K ALLSGPPG+GKTTTA +V +ELG++ +E NAS TRSK+ + ++S + + K + ++ L+MDE+DGM+GNEDRGG+ ELI +I+ SKIPIIC+CNDR K+++++NY DLRF++ +EQ+ A+ S +KE + +P ALNEI++ASN D+RQV HN+ +WSA + M KS+A ++ K+ K+GPFDV +KVFT + +L KSDLFF DY+L LFVQENY+ V P ++ + L+S ADSI+ D+V K+R+ NW LLP Q +YASV+PGE M G +T FPSWLGK S +K+ RI+ L H+ T G + +L++DY L +L PL+ E + L+++D+D ++E + W DP S + S++K A TRAYNK PYS+ KKG GE+ L Sbjct: 330 QSTSTSPDDSEKKKAHTLAFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLESMEREDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELIRTKPGKKSVYEIAAEAEASKNTPKTQKISPSKGNSRSPHTPSPSKTGRAQRSSEGSTPPGRGAAHTARRELGLSPSTS----SSAPKVASSSGTAEGPSLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQNWYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVSESLNNTSIEDFYKGTSQTVSSRHVLIMDEVDGMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPRVEQIKGAMMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAARARKDMKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGDMKSHLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMTHFPVFPSWLGKNSSTSKHSRIMQELSSHMSLKTMG---SRQALNLDYLPFLRLALLAPLQRLGAEGAGQAVKLLDDYQLVKDDVDSIMEVSVWGGRPDPFSKLDSKVKAAFTRAYNKEVHLTPYSLQTVKKGRRGGGETDL 1050
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: ENSORLT00000011025.2 (chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:101165699]) HSP 1 Score: 77.0258 bits (188), Expect = 7.671e-14 Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = 3 Query: 1287 FKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDG 1505 FK ALLSGPPG+GKTT AHV+AK GY V+E NAS RS I KS + E CL++DEIDG Sbjct: 344 FKVALLSGPPGLGKTTLAHVIAKHAGYNVVEINASDDRSAEVFQKRIDTATQMKSVLGANERPNCLIIDEIDG 416
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: rfc2 (replication factor C subunit 2 [Source:NCBI gene;Acc:101163395]) HSP 1 Score: 56.9954 bits (136), Expect = 5.073e-8 Identity = 56/228 (24.56%), Postives = 104/228 (45.61%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKEL-----GYTVIEYNAS------ITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQ 1790 +V+K++P + +IVG + +L + F + G + +++GPPG GKTT+ +A+ L V+E NAS + R+K +M +T K +++DE D M+ + + K ++ + C +D+ +Q+ L R+ KLT Q+ + ++ + KE++SV DD L ++ S D+RQ +N+Q Sbjct: 39 WVEKYRPLKLNEIVGNE---ETVSRLEV------------FAREGNVPNI---IIAGPPGTGKTTSILCLARALLGSAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVT-------LPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVL---RYAKLTDGQILSRLQEVIEKERLSVSDDGLEAVIFTSQGDMRQALNNLQ 238
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Match: atad5a (ATPase family AAA domain-containing protein 5 [Source:NCBI gene;Acc:101166554]) HSP 1 Score: 51.6026 bits (122), Expect = 4.476e-6 Identity = 34/111 (30.63%), Postives = 47/111 (42.34%), Query Frame = 3 Query: 1134 VLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWA--------NNYKL-------------GFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRS 1403 +L+ DK++PQ +I+ K+L WL W N K G + GE L+ GP G+GKT + A+ELG+ V E NAS RS Sbjct: 967 LLWTDKYQPQLCSEIIDNPAS---VKRLYSWLKEWKLRTDREEKKNQKSNKPEEGNVDSDWDGPDEYGEDTLCNTMLIIGPTGVGKTAAVYACAQELGFKVFEVNASSQRS 1074
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000005481.1 (SMESG000005481.1) HSP 1 Score: 1622.45 bits (4200), Expect = 0.000e+0 Identity = 879/881 (99.77%), Postives = 881/881 (100.00%), Query Frame = 3 Query: 30 MKRLSSIPSPNSDFEFDIXXXXXXXXXXXXXXXXXXXXXXANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDXXXXXXXXXXXXXXXXXXLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVVTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTXXXXXXXXXXREDIDLLVEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPXXXXXXXXXXXXXKDDGIDNDCNIL 2672 MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDDFFSSTKKSKKTVDSNSNLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFV+TGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELISIIKQSKIPIICICNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTLNILNQLNLLREDIDLL+EATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPEMETEEIEEEAEEKDDGIDNDCNIL Sbjct: 1 MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPKSQLTIKAAFDNAKPVKRHVTCLDDYFKKSNAKSAVQEISPDDFFSSTKKSKKTVDSNSNLNIETTIPATLKTEVKAKSDSKFQPFVVENSPLKTQSVVNKTAHLPNESLKTPTKETKHEANVTSPPKSANKKNYHAFLNRSGPVALGSKEIPKGSPTCLSGMTFVMTGVLESIERDDAQSLIERHGGRVTKALSGKTTYLIIGSEPGESKIQKAQKLNTKQINEDELFQMIRNSSSKPISTNEPIKSKKETEVEKFNKVKAKESKIEHKQPIKPIKESKTPVEKIEKPSENILYKPTTNKKHLSGKPIVTISNSTKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCKSDCWSKELKYCLVMDEIDGMSGNEDRGGLTELISIIKQSKIPIICICNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLWSATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVKTLTQKSDLFFQDYNLGGLFVQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRTTNNWGLLPLQGMYASVIPGEYMHGNLTDRINFPSWLGKYSKQNKNKRILSTLCLHLRHSTHGGVSNPSSLSMDYSGILLNKILKPLREGDIETTLNILNQLNLLREDIDLLIEATSWSHLGDPLSSVSSQIKGALTRAYNKSNFKLPYSIVAFKKGIAASGESPLPEMETEEIEEEAEEKDDGIDNDCNIL 881
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000040188.1 (SMESG000040188.1) HSP 1 Score: 68.9366 bits (167), Expect = 1.327e-11 Identity = 93/398 (23.37%), Postives = 154/398 (38.69%), Query Frame = 3 Query: 1119 STKSTVLFVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNW---------------ANNYKLGFK--------KIGEADHF---KGALLSGPPGIGKTTTAHVVAKELGYTVIEYNASITRSKSQMPGIISLTRDCK----SDCWSKELK--YCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQ------SRKLQTIANYLLDLRFRKL------------TLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQLW---SATEMDSGDLKSEAQKSHKEFKIGPFDVVQKVFTHDKVK------TLTQKSDLFFQDYNLGGLF------------VQENYLKVAPFGCRNNVDKTMELISNAADSIAMSDIVGTKLRT 2099 S S L+V K+ P R+ V S + L WL +W N+ G K +I D K LLSGPPG+GKTT A +VA+ +GY +E NAS RS I D + +D +++L CL++DEIDG +G L I +++ + ++ +R + I N L R+L Q+ + E + + L ++ SN D+R + +Q + + +L S K+ IG F + Q +FT +K T ++L ++ N+ L + ENYL + F D ++ + +AAD + +D+ + + Sbjct: 134 SASSKTLWVTKYAP---RKYVDLLSSESANRSLLSWLKSWDKHVFNRNTKFTDKLIYNFNTGNKGTNFEEVLQINPKDQMPVKKVVLLSGPPGLGKTTLAQIVARSVGYYPVEINASDDRSPEVFKNRIEALNDTQLGISNDSGNEQLMKPCCLILDEIDG-TGVAAVNILVNAILASNKTENSTKTVGKKKEKSPLKINRPIICICNDLYAQSLRQLRPLCYVIKIIPPDYNQLMRRLSEIGKLENLEFDHNLLRNVIDMSNRDIRSCLNTLQFIEHKDPNDFVATNLVSNINIGQKDVDIGIFKIWQDIFTEPNLKRSYLATTGKNSNELATRNKNILALARSAGDLDKIISGIHENYLSIVRFK-----DFFLQGMVDAADWMVFNDMTNVYINS 522
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Match: SMESG000041132.1 (SMESG000041132.1) HSP 1 Score: 50.0618 bits (118), Expect = 4.584e-6 Identity = 58/228 (25.44%), Postives = 102/228 (44.74%), Query Frame = 3 Query: 1140 FVDKFKPQTMRQIVGQQGDRSPAKKLSLWLSNWANNYKLGFKKIGEADHFKGALLSGPPGIGKTTTAHVVAKE-LGYT----VIEYNASITRSKSQMPGIISLTRDCKSDCWSK-----ELKYCLVMDEIDGMSGNEDRGGLTELXXXXXXXXXXXXXXXNDRQSRKLQTIANYLLDLRFRKLTLEQMTAAVKSAMFKEKISVPDDALNEIVMASNFDLRQVFHNIQL 1793 +++K++P + IVG +G K+L + F K G + +++GPPG GKTT+ +A+ LG T V+E NAS R GI + KS +K + +++DE D M+ + + + CND S+ ++ I + LR+ KL+ ++ A + + E + DD L I+ + D+RQ +N++L Sbjct: 14 WLEKYRPLVLSDIVGNEG---TIKRLEI------------FSKQG---NLPNLIIAGPPGSGKTTSILCLARAMLGETYKNAVLELNASNDR------GIEVVRNKIKSFARNKVNLPDGMHKIIILDEGDSMTEGAQQA--LRRTMEMYSNTTRFAFACND-SSKIIEPIQSRCAMLRYTKLSDSEILARLLEIIKMESVIYTDDGLEAIIFTAQGDMRQAINNVEL 214 The following BLAST results are available for this feature:
BLAST of Replication factor C subunit 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of Replication factor C subunit 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Replication factor C subunit 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Replication factor C subunit 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 4
BLAST of Replication factor C subunit 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of Replication factor C subunit 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Replication factor C subunit 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015448 ID=SMED30015448|Name=Replication factor C subunit 1|organism=Schmidtea mediterranea sexual|type=transcript|length=2943bpback to top protein sequence of SMED30015448-orf-1 >SMED30015448-orf-1 ID=SMED30015448-orf-1|Name=SMED30015448-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=913bp MKRLSSIPSPNSDFEFDISEIKNKYKRSKKEKKPEESTSSANKKDKSLPKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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