Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015424 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU462878.3 (pep chromosome:GRCz11:17:8542203:8545189:1 gene:ENSDARG00000103562.2 transcript:ENSDART00000158873.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU462878.3) HSP 1 Score: 103.219 bits (256), Expect = 2.582e-21 Identity = 70/227 (30.84%), Postives = 113/227 (49.78%), Query Frame = 1 Query: 4684 KLASASSPGDDNITYRDLRLLDPE-GKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAK 5361 KL + +PG D + P+ +L + FN ++ G+IP +W+ +IPK GK + + SS+RPI++L+ YK+F SILS+RL I++ L + G + + N T + ++ + LD + AF SV YL+ +LA G + F+ ++ LY + + + I ++RG RQGCP+S LF L I P+ AI P K Sbjct: 278 KLKANKTPGTDGYPSEMYKTFKPQITPMLLKCFNYVLRGGEIPQSWQEAVISIIPKQGKDKN--ECSSYRPISVLNVDYKLFASILSKRLEVVISE---LVDLDQTGFIQNRQTQDNLRRTLQIMSHITTENISAMLLSLDAEKAFDSVGWDYLYQVLARFGFNNKFIECIKGLYLSPKAKIKINGHLSKTIYLERGTRQGCPLSPTLFALFIEPLAQAIREEPEIK 499
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX649434.3 (pep chromosome:GRCz11:3:18270043:18274691:-1 gene:ENSDARG00000105157.2 transcript:ENSDART00000161140.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX649434.3) HSP 1 Score: 96.2857 bits (238), Expect = 5.081e-19 Identity = 78/265 (29.43%), Postives = 130/265 (49.06%), Query Frame = 1 Query: 4567 QFTQSDPGEFVF--NIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPE-GKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCC-GPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSS 5349 + Q D VF N+ + SN LEL + + + SPG D I ++L P G+ L N ++ G +P + R L+PK G + +WRP++LL + YKI + L+ RL++ + ++++ P Q ++ ++ ALE +K I+ LD + AF V H YL +L G HF+ ++ ++Y+N S G L+ P D++RGVRQGC +S +L+++AI P+L I + Sbjct: 452 EVLQRDVENSVFFENLSKVDDESNAMLELPISQDELYTVMMSMENGKSPGIDGIPVDFYKVLWPVIGEDLFLVLNDSLNKGSLPLSCRRAVITLLPK---KGDLQKIGNWRPVSLLCSDYKILSRALAVRLSKVL--DQIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGINCGLIS-LDQEKAFDRVEHEYLKKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAP-FDVQRGVRQGCAMSGMLYSIAIEPLLHRIRAE 709
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CABZ01033394.1 (pep chromosome:GRCz11:13:6032844:6038477:-1 gene:ENSDARG00000101795.2 transcript:ENSDART00000166130.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01033394.1) HSP 1 Score: 93.9745 bits (232), Expect = 2.180e-18 Identity = 125/501 (24.95%), Postives = 220/501 (43.91%), Query Frame = 1 Query: 4492 RKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFNI-QEFCIRSNKPLELCKISARDVIFELK-LASASSPGDDNITYRDLRLL-DPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCC-GPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGL--EFRPEKCAYLTTSNSTDXXXXXXXXXX----XXXXXDREFYQYLGVPVGESP-NQTPYD-TLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRT----REIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDL 5946 R++ V ++ E + + EN+ F ++ P NI QE+ + +PL S +++ LK + +PG D + ++ D G+ N+ + G +P + R L+PK G ++ +WRP++LL + +KI + L+ RL I ++HP Q +++ +++ L+ S Y L + +D + AF V H YLW+ L G F+ ++++LY + S G L+ P I RG+RQGC +S +L++LAI P+L + S I + + N +Q A A D+ +N ++ + + + EF A + S L N NN + + +YLGV +GES Q +D +EK+ KLK W+ + H +L+F R I + R + + L ++ F++ H P++ +Y P+ GG V L Sbjct: 434 RRRAVQFYVDLYRSEYKED-ENLSASFYENLP-----NISQEYKEKIERPL-----SELELLTALKAMQPGKAPGIDGLPIEFYKIFWDVLGEDFLAVLNESLTEGSLPLSCRRAVVTLLPK---KGDLQEIKNWRPVSLLCSDFKILSKTLANRLKNVI--GHIIHPDQTYCVPGRSIMDNISLVRDILDLSSYFN-LDLGLISIDQEKAFDRVEHQYLWNTLEAFGFGSGFIGMIKVLYQDIESVLKINGGLSAP-FKINRGIRQGCALSGMLYSLAIEPMLRKLRSR-IEGFMLANKSVQHQLSAY--------ADDVIVFVNGQKDVNTLVSIISEFDKLSAARVNWGKSDALINGKWNNGTPILPGGLIWKKGGLKYLGVYLGESTMQQKNWDGIIEKI---EGKLKK-----WR-------WIHPQLSFRGRVLIINNLIASTLWHRLFCTEPPSGLLLFLQAKLVNFFWDRMHWVPQSELYLPLEEGGQGLVSL 892
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkey-187k19.2 (si:dkey-187k19.2 [Source:ZFIN;Acc:ZDB-GENE-131121-68]) HSP 1 Score: 92.8189 bits (229), Expect = 2.226e-18 Identity = 84/282 (29.79%), Postives = 134/282 (47.52%), Query Frame = 1 Query: 4702 SPGDDNITYR-DLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPV-LVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALIN--NSVEIASRIGLEFRPEKCAYLTTSNS 5535 SPG D ++ L + L + + I+ ++P + + L+PKP K D +WRPI LL+ YK+ + I ++RL E + N+++ Q G + ++ L++S + L + +LD AF ++ H +++ L Y G F+SI+ L + + NS P T+ + I RGVRQGCPI+ LF L + + + + SS I I N +I+I ADD L L A + N IAS GL KC ++ NS Sbjct: 187 SPGSDGLSVEFYLHFWNIIENPLFEMYKESIELKELPTSLKQGLITLLPKPNKDLMILD--NWRPITLLNVDYKLLSLIYAKRLKEGL--NEIISEYQTGFMAGRHISWNIRLILDLLDYSNLIESEALLL-FLDFHKAFDTIEHQFMFMALKYFGFGDRFISIMELFHRDINSSINLYPNTSKRFPICRGVRQGCPIAPFLFLLVVEFLSIYVLKSSAIQGITIFNKEIRISQLADDTVLFLKDKDQLPAALQLVNDFSIAS--GLTLNVTKCEIISLYNS 461
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX323564.1 (pep chromosome:GRCz11:2:10597810:10600950:-1 gene:ENSDARG00000098557.2 transcript:ENSDART00000160216.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX323564.1) HSP 1 Score: 92.0485 bits (227), Expect = 8.095e-18 Identity = 88/303 (29.04%), Postives = 142/303 (46.86%), Query Frame = 1 Query: 4648 CKISARDVIFELKLASAS---SPGDDNITYR-DLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPV-LVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALIN--NSVEIASRIGLEFRPEKCAYLTTSNS 5535 C+ + + E+ L S SPG D ++ L + L + + I+ ++P + + L+PKP K D +WRPI LL+ YK+ + I ++RL E + N+++ Q G + ++ L++S + L + +LD AF ++ H +++ L Y G F+SI+ L + + NS P T+ + I RGVRQGCPI+ LF L + + + + SS I I N +I+I ADD L L A + N IAS GL KC ++ NS Sbjct: 166 CEENLNKLEMEIALRSMKQNKSPGSDGLSVEFYLHFWNIIENPLFEMYKESIELKELPTSLKQGLITLLPKPNKDLMILD--NWRPITLLNVDYKLLSLIYAKRLKEGL--NEIISEYQTGFMAGRHISWNIRLILDLLDYSNLIESEALLL-FLDFHKAFDTIEHQFMFMALKYFGFGDRFISIMELFHRDINSSINLYPNTSKRFPICRGVRQGCPIAPFLFLLVVEFLSIYVLKSSAIQGITIFNKEIRISQLADDTVLFLKDKDQLPAALQLVNDFSIAS--GLTLNVTKCEIISLYNS 461
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000032317.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:130520927:130524992:-1 gene:ENSXETG00000008594.1 transcript:ENSXETT00000032317.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 118.242 bits (295), Expect = 1.224e-25 Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 1 Query: 4642 ELCKISARDVI--FELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP 5352 EL + ++ + F L A+ + I R +LL P +L + F + + GQ P++ +L+PK GK S+RPI+LL+ KIF +L+RRL+ IT K++HP Q G + + L L H+ + A AIA LDI AF +V YLW +L + G ++ +++LLY + LTTP + RG RQGCP+S +LF +AI P A+ + P Sbjct: 448 ELTAVEIQEAVNAFPLGKAAGADGLPIEIYKRHSKLLTP---MLLKLFKEAVQLGQFPESLYEAAIVLLPKQGKDPHL--CESFRPISLLTADVKIFAKVLARRLSRVIT--KIIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAVRAHP 678
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000040456.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:8:87387561:87390644:-1 gene:ENSXETG00000021299.1 transcript:ENSXETT00000040456.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 117.857 bits (294), Expect = 1.349e-25 Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 1 Query: 4642 ELCKISARDVI--FELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP 5352 EL + ++ + F L A+ + I R +LL P +L + F + + GQ P++ +L+PK GK S+RPI+LL+ KIF +L+RRL+ IT K++HP Q G + + L L H+ + A AIA LDI AF +V YLW +L + G ++ +++LLY + LTTP + RG RQGCP+S +LF +AI P A+ + P Sbjct: 78 ELTAVEIQEAVNAFPLGKAAGADGLPIEIYKRHSKLLTP---MLLKLFKEAVQLGQFPESLYEAAIVLLPKQGKDPHL--CESFRPISLLTADVKIFAKVLARRLSRVIT--KIIHPDQIGFIPAKTAALNTRRLYLNLAHASAGQGAK-AIAALDITKAFDTVEWPYLWQVLTHFGFGKKYIQMVQLLYKYPVASIRINSLTTPAFALSRGTRQGCPLSPLLFAIAIEPFAQAVRAHP 308
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: efcab14 (EF-hand calcium binding domain 14 [Source:Xenbase;Acc:XB-GENE-5791088]) HSP 1 Score: 102.834 bits (255), Expect = 6.456e-22 Identity = 77/227 (33.92%), Postives = 115/227 (50.66%), Query Frame = 1 Query: 4687 LASASSPGDDNIT---YRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGC-VEHNAILT-AALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP 5352 L S +PG D + Y+ L P KLL DN +P ++ ++IPKPGK S SS+RPI+L++T KI IL+ RL + D L+HP Q G + + T + H + + +A LD AF S+ YLW++L+ G F+ ++LLY + + +T+P ++RG RQGCP+S ILF LAI P+ + I +SP Sbjct: 116 LPSNKTPGPDGLPSNWYKVLAEYIP-SKLL-ETLQYAYDNQALPASFAEALIVVIPKPGKDPSL--CSSYRPISLINTDAKILAKILATRLQRVVPD--LVHPDQSGFMPGRSTDINLRRLFTNLQIPHLETDTRV---VASLDSAKAFDSIEWGYLWEVLSGFGFGQTFLKWIKLLYQHPTARVRVNGITSPPFSLERGTRQGCPLSPILFALAIEPLAILIRNSP 333
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000045854.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:73083463:73084749:1 gene:ENSXETG00000020482.1 transcript:ENSXETT00000045854.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.064 bits (253), Expect = 7.413e-22 Identity = 66/189 (34.92%), Postives = 101/189 (53.44%), Query Frame = 1 Query: 4792 DNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGC-VEHNAILT-AALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP 5352 DN +P ++ ++IPKPGK S SS+RPI+L++T KI IL+ RL + D L+HP Q G + + T + H + + +A LD AF S+ YLW++L+ G F+ ++LLY + + +T+P ++RG RQGCP+S ILF LAI P+ + I +SP Sbjct: 202 DNQALPASFAEALIVVIPKPGKDPSL--CSSYRPISLINTDAKILAKILATRLQRVVPD--LVHPDQSGFMPGRSTDINLRRLFTNLQIPHLETDTRV---VASLDSAKAFDSIEWGYLWEVLSGFGFGQTFLKWIKLLYQHPTARVRVNGITSPPFSLERGTRQGCPLSPILFALAIEPLAILIRNSP 383
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.834 bits (255), Expect = 6.864e-21 Identity = 69/200 (34.50%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 4762 LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAK 5361 LL + + + I G +P++ +L+PKPGK + S+RPI+LL+T KI+ IL+RRL I L++P Q G + + L L + S AIA LDI AF +V YLW +L +G F+++++LLY + + L T + RG RQGCP+S +LF LAI P A+ P+ + Sbjct: 487 LLTKMYGEAISTGILPESMYEAAIILLPKPGKDP--QLCESFRPISLLTTDVKIYAKILARRLARVI--KTLVNPDQIGFIPTKTTALNTRRLYLNLSLTP-SNTGNRAIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIQ 681
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 5.079e-23 Identity = 116/430 (26.98%), Postives = 190/430 (44.19%), Query Frame = 1 Query: 4666 DVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPK-PGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQ--------YLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGG 5928 D I E++ ++ G D +T +D + + FN I+ +GQ P + +T+LIPK PG D + +RP+++ S + F IL+ R+ E + LL Q+ V +G E+ ++L+A ++ ++ K L IA LD+K AF SV H + D L + + + +Y N+ + I RGVRQG P+S +LFN ++ VL + + + +G +I L +ADD+ L+A + LQA ++ GLE P KC L S I + K + ++E Q YLGV + P + D ++ + L P Q++ F R +GR S D + +R + G+ LPH+ P Y ++PI GG Sbjct: 322 DEIKEVEACKRTAAGPDGMTTTAWNSID---ECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTM----DPACFRPLSIASVALRHFHRILANRIGE----HGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKIKG-LYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPEN--TGFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYN---SYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKL--------VLGRTSNADVRKGD--KIIRKTVRGWLRLPHDTPIGYFHAPIKEGG 724
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P16423|POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.607e-22 Identity = 109/428 (25.47%), Postives = 193/428 (45.09%), Query Frame = 1 Query: 4684 KLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDR-------EFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDL 5946 +++ +SSPG D IT + R + P G +L R N I+ G +P + R +T+ IPK + +D +RPI++ S + +IL+ RL I P Q+G +GC ++ I+ L HS ++ IA LD+ AF S+ H ++D L G FV ++ Y + ++ + RGV+QG P+S ILFNL ++ +L + S A K+GN+ A+ADD+ L A + LQ L++ +++ S +GL+ +KC + +L + ++YLG+ + + + E + +L + L P Q++ A +T +L + I + + +R + + NLP + P A++++P +GG L Sbjct: 353 RVSLSSSPGPDGITPKSAREV-PSGIML-RIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQD---FRPISVPSVLVRQLNAILATRLNSSIN----WDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRS-CYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGA--KVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTAT-GRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVL----------RKTDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSL 757
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.217e-19 Identity = 69/242 (28.51%), Postives = 121/242 (50.00%), Query Frame = 1 Query: 4654 ISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLT-TPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGN 5376 I+ ++ +K S+PG D +T + + +L F + G +P W + +T LIPK G E+ S+WRPI + S ++ IL++RL + LHP QKG + +G + N++L S+ ++ + LD++ AF +V H + L +G+D + + +++ + GP + T KI I+RGV+QG P+S LFN ++ +L ++ S+P IG Sbjct: 6 IAREEIQCAIKGWKPSAPGSDGLTVQAI----TRTRLPRNFVQLHLLRGHVPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE----LHPAQKGYARIDGTLV-NSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGE 235
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.303e-15 Identity = 68/218 (31.19%), Postives = 95/218 (43.58%), Query Frame = 1 Query: 4702 SPGDDNITYRDLRLL-DPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQK----GGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAI 5340 SPG D +T + D G R + G++P + R L+PK G +WRP++LLST YKI +S RL + + ++HP Q G ++F+ N L L H LA LD + AF V H YL L FV L+ +Y + T + RGVRQGCP+S L++LAI P L + Sbjct: 466 SPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPK---KGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAE--VIHPDQSYTVPGRTIFD-----NVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL 673
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|O00370|LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 7.025e-15 Identity = 60/226 (26.55%), Postives = 104/226 (46.02%), Query Frame = 1 Query: 4687 LASASSPGDDNITYRDLRLLDPE-GKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLH-------PGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAI 5340 L + SPG D T + E L + F I G +P+++ +LIPKPG+ + ++ ++RPI+L++ KI IL+ R+ + I KL+H PG +G + ++H +K I +D + AF + ++ L +G+DG ++ I+R +Y + +K G RQGCP+S +LFN+ + + AI Sbjct: 465 LPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKE--NFRPISLMNIDAKILNKILANRIQQHI--KKLIHHDQVGFIPGMQGWFNIRKSIN-------VIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAI 679
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A159X4Q6 (ORF2-like protein (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 457.603 bits (1176), Expect = 1.799e-142 Identity = 233/319 (73.04%), Postives = 271/319 (84.95%), Query Frame = 1 Query: 4138 ICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLIQRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFNIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIA 5094 I SYI LTDRS FKMDLT VGNKL+SILLPP QNTD K+ +T+ +RR I N L +I CN NEAY+KII++ NK+NIKP KPYLG NFF+ LN+ KMIK+KGGYFHNRKKV T+I++EINI+TRP+MENIL+QFTQ DP EFVF+I ++CI+S + +EL +I+A++VIFE K A+ASSPGDDNITYRDLRLLDPEGKLLAR FN IID+GQIP++W SFKT+LIPKPGKSG Y+DTSSWRPIALLST YKIFTSILSRRLT+WI +NKLLHPGQKGGS FEGCVEHNA+LTA LEHSKYSKKAPLAIA Sbjct: 1 IXSYIXXXLTDRSXFKMDLTYVGNKLESILLPPKQNTDQNILKLPLICKTINERRKICNILLAEIATCNANEAYSKIISAANKSNIKPEHKPYLGKNFFNSLNSDNKMIKIKGGYFHNRKKVATRILDEINIDTRPSMENILNQFTQMDPDEFVFSISDYCIKSKEIIELDQITAKEVIFEYKQANASSPGDDNITYRDLRLLDPEGKLLARLFNIIIDSGQIPNDWLSFKTILIPKPGKSGDYDDTSSWRPIALLSTSYKIFTSILSRRLTKWIIENKLLHPGQKGGSRFEGCVEHNAVLTAVLEHSKYSKKAPLAIA 319
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 2.193e-76 Identity = 269/891 (30.19%), Postives = 425/891 (47.70%), Query Frame = 1 Query: 4495 KKVVTKIINEINIETRPNMENILDQF--TQSDPGEFVFNIQE------FCIRSNKPLELCKISARDVIFE-LKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSK--------YSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP-IAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDR-EFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAI--GRPSAKDSHNKNLSTQLRSIIY---------GFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIR-ISDPSISQCLEWINGKSFNK----NSLSRKTWWIRFRNAIQHLRNTRGI-------------TISLEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKC-DQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIW 7020 K + ++++ T EN + F + S P E +F QE F + E +I RD I + +K AS S+ G D ITY D++L DP G++L F I+ N P ++ +T++IPKPGKS Y D SSWRPI + S Y++ L+ L WI N++L QK FEGC +HNA+L ++ + +K L I +LD +AFGSVP L + G+ +++++ LY + + CG + + +GV+QGCP+SM+LFN+ IN ++ AI + P + Y +G+ I+ILAYADDIALI++S DLQ ++ + I +GL F P KCA + + IL N ++ K + + Y+YLG + L+ ++ +T + S+L+P QK+ AY+TF HS+L F R I S R + K ++N N S + Y F LP K + Y GG DEY SI+ FRLL + P ++ I+ L ++ ++ + + SQ + N ++ + LSR T W R + A + L++T I T+SLE + L I ++ +G D KK+ L ++ + + L+ + + + + ++NK I + W FIHRAR L P +S CRKC + ETMSH L +C LINERH++ + + S + + QK + + R D+ + + LV++KCP DT+ +F+ + DKY+ + LE P +V L T I G+LGS LR++G ++ + + NI S W Sbjct: 221 KLAIREVLHRKTTATSSPSENAIKAFFSSYSRPAE-LFTGQELLESSWFPVHPEDDFEF-RIPGRDQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGKS-DYSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSEDPTLNSAIKHDL--ISHLNLKGFVNINFSQAISIFNSNFTDRTDHFSHLSR-TEWARLQLARKKLKSTLAIQTNVCLINGHLVLTLSLENN---VLLIDSKEKG-------DVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLL-----PTKLFSVSNLCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYV---NELRPDITMESDTQYY--LVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQW 1085
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A3L8D8E5 (Reverse transcriptase domain-containing protein OS=Ooceraea biroi OX=2015173 GN=DMN91_010823 PE=4 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 6.714e-75 Identity = 244/839 (29.08%), Postives = 387/839 (46.13%), Query Frame = 1 Query: 4639 LELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTN-TNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEI-ASRIGLEFRPEKCA--YLTTS--NSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWING------KSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLEYDGFFSLRITTEHRGT-TIIYSLDRKKLACFLHKL---IQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLN-LVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCDQ-VETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPG--DGKRVDLLIRDNKNMTIKLVDIKCPLDTEF-NFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPKYLRHVNN*NPYI 7092 L + + +V L+ + S+PG D I Y DLR DP +LL FN +P +W++ T+L+ K G S E SWRP+AL T K+F ++ + RLT+W+ N L QKG EGC EHN +L L ++ +++ + +AWLD+ +AFGSVPH + L GV ++I +Y T T P I I+ GVRQGCP+S I+F+L I+ V+ A + Y I ILAYADD+ALIA + ++ L+ +VE+ A R+GL F P KCA ++TT + + L + E Y++LGVP G S +QTP T+E +L D + S L PWQ+V+ F RL F R ++ + A D H +R I+ + NLP A +Y P GG + L D L+I AFRLLT + S + SLR V + RI + PS + +++G + + SL + R A + R ++ E + E RG I + A +H+L + E Y L + P+ N + W F+HRAR + L +N + + +CR+C + ET+ HV+ C + I RH++ L+++ + + + + ++Q+ E V G +G R DL++R + ++ + D+ + F+ + + +Y L L Y+V ++ + G+LGS D +LR + V + + I +S I+ H +G P R + P + Sbjct: 641 LLMAPFTEGEVDRRLRRMTNSAPGPDGIAYNDLRAADPGARLLTALFNACYRLEAVPPSWKTSNTVLVYKKGDRDSLE---SWRPLALGDTMPKLFAAVAADRLTDWVIANDKLCRAQKGFLRDEGCYEHNFVLQEILTDARRTRRHAV-VAWLDLSNAFGSVPHAAIRSALVRAGVPSGLINIWGSMYDGCTTRVRAVDGFTAP-IPIRSGVRQGCPLSPIIFDLVIDSVVRAAAELADVGYDILGQTFNILAYADDLALIARTPEGMRQLL-TAVELEAGRVGLHFNPAKCASLHITTGRIGRVLPTVFEIEGRPMPTLAEGEPYRHLGVPTGFSVDQTPLTTIEGVLKDIWAVDASLLAPWQRVEVLAAFILPRLDFLLRGAAVEKRPL---RAVDLH-------VRRIVKSWLNLPQRASAEVVYLPPSRGGCGLLPLSDLADVLTIAHAFRLLTASDAVVSGLAWGSLRGVVARRIGHA-PSDEEIASFLSGSLEGRLRGGGEASLWSRARNAARRQANRAAVRWRWSEVTGE--------MIVECRGPGERIVRVPGSARAQVIHRLRSAVMEYYAGTLLRKPDQGKVFEVSSRVPVSNHFMRGGSFTRFADWRFVHRARLDVLPLNGA-RRWGTVDERCRRCGRTAETLPHVIGHCGVHAAAIQLRHDAVLHRLRRACRLPGE-VRVNQRVEGVDGELEGLRPDLVVRHEPSKSVVICDVTVAFENRLVAFEEARGRKVARYTPLAEALRAQ--GYRVVVTALVVGALGSWCPRNDAVLRLLRVGSKYGSMMRRLIVSDTIRWSRDIYVEHVSGVRQYPAPPRPSGDGGPLV 1450
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A3L8DAI7 (Reverse transcriptase domain-containing protein OS=Ooceraea biroi OX=2015173 GN=DMN91_010948 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 5.103e-74 Identity = 231/778 (29.69%), Postives = 366/778 (47.04%), Query Frame = 1 Query: 4666 DVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTN-TNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEI-ASRIGLEFRPEKCA--YLTTS--NSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWING------KSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLEYDGFFSLRITTEHRGT-TIIYSLDRKKLACFLHKL---IQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLN-LVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCDQ-VETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPG--DGKRVDLLIRDNKNMTIKLVDIKCPLDTEF-NFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILR 6936 +V L+ + S+PG D I Y DLR DP +LL FN +P +W++ T+L+ K G S E SWRP+AL T K+F ++ + RLT+W+ N L QKG EGC EHN +L L ++ +++ + +AWLD+ +AFGSVPH + L GV ++I +Y T T P I I+ GVRQGCP+S I+F+L I+ V+ A + Y I ILAYADD+ALIA + ++ L+ +VE+ A R+GL F P KCA ++TT + + L + E Y++LGVP G S +QTP T+E +L D + S L PWQ+V+ F RL F R ++ + + + +R I+ + NLP A +Y P GG + L D L+I AFRLLT + S + SLR V + RI + PS + +++G + + SL + R A + R ++ E + E RG I + A +H+L + E Y L + P+ N + W F+HRAR + L +N + + +CR+C + ET+ HV+ C + I RH++ L+++ + + + + ++Q+ E V G +G R DL++R + ++ + D+ + F+ + + +Y L L Y+V ++ + G+LGS D +LR Sbjct: 875 EVDRRLRRMTNSAPGPDGIAYNDLRAADPGARLLTALFNACYRLEAVPPSWKTSNTVLVYKKGDRDSLE---SWRPLALGDTMPKLFAAVAADRLTDWVIANDKLCRAQKGFLRDEGCYEHNFVLQEILTDARRTRRHAV-VAWLDLSNAFGSVPHAAIRSALVRAGVPSGLINIWGSMYDGCTTRVRAVDGFTAP-IPIRSGVRQGCPLSPIIFDLVIDSVVRAAAELTDVGYDILGQTFNILAYADDLALIARTPEGMRQLL-TAVELEAGRVGLHFNPAKCASLHITTGRIGRVLPTVFEIEGRPMPTLAEGEPYRHLGVPTGFSVDQTPLTTIEGVLKDIWAVDASLLAPWQRVEVLAAFILPRLDFLLRGAAVEKRPL----------RAVDLHVRRIVKSWLNLPQRASAEVVYLPPSRGGCGLLPLSDLADVLTIAHAFRLLTASDAVVSGLAWGSLRGVVARRIGHA-PSDEEIASFLSGSLEGRLRGGGEASLWSRARNAARRQANRAAVRWRWSEVTGE--------MIVECRGPGERIVRVPGSARAQVIHRLRSAVMEYYAGTLLRKPDQGKVFEVSSRVPVSNHFMRGGSFTRFADWRFVHRARLDVLPLNGA-RRWGTVDERCRRCGRTAETLPHVIGHCGVHAAAIQLRHDAVLHRLRRACRLPGE-VRVNQRVEGVDGELEGLRPDLVVRHEPSKSVVICDVTVAFENRLVAFEEARGRKVARYTPLAEALRAQ--GYRVVVTALVVGALGSWCPRNDAVLR 1623
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: W4Y7A7 (Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 6.281e-74 Identity = 249/886 (28.10%), Postives = 412/886 (46.50%), Query Frame = 1 Query: 4480 YFHNRKKVVTKIINEINIETRPNMENILDQFTQ--SDP----------GEFVFNIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAK---YKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTS----NSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGK-----SFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMD-LRNGKINNFIANTYVNCPLINKAIFKSK---LNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCDQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDG---KRVDLLIRDNKNMTIKLVDIKCPLDTEFNF-QNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGN 7041 Y ++K+ V I+ + + E +LD F + + P E +F E S L + IS +++ L S S+PG D + YR +R D ++ FN+ + +IP W+ T+LI KSG+ +D +++RPIAL S YK+F ILS R+T+W ++ LL P QK EGC EH +L++ ++ +K ++K IAWLD+++AFGS+PH + +L IG V +L+ YT ++ + T I I+ GV+QGCP+S ILFNL I ++ A+ + ++ I+AYADD+ L++ + L A+++ + E A + L F+P KCA L+ S S + + L + E Y+YLGVP G D + KL + + +S L PWQK+DA KTF L+F R + S + ++L + + + + LP A AYI++ +GG AF+D + + I QA R+L+ + I L+ V I + P+ +++G + + NS + W R R+A + L T T S + + +H + S+ R +LIQ T + + L++ +A + N P N + + + + W FIHRAR N L N + + + + Q ET+ HVL C N + I RH++ ++ +I+ + + + VPGD +R D+ + + +T+ +DI P D N + + ++KY L+ L V + I G+LG+ + L +GV R + C I I+ S IW H TG+ Sbjct: 941 YKRSKKRAVRHILRDDAPSFSGSNEQLLDYFKEIYAPPEIDENRAQQLAESLFTDLEEAKESAAAL-MSPISQQEISTRLSRMSNSAPGKDRLEYRHIRQADGACRVTHIMFNRCLQEHRIPSAWKEATTILI---HKSGTTDDPANFRPIALQSCLYKLFMGILSDRMTQWACNHNLLSPEQKSARPCEGCHEHTFLLSSVIKDTKRNQKT-ANIAWLDLRNAFGSIPHQAIHAVLTTIGAPVSLVMLLKDTYTGASTSFLSTSGETDPIQIQSGVKQGCPMSAILFNLTIELIIRAVKKKATDDGLGLVVHGQRLSIMAYADDLVLMSKTPEGLDAILSVASEQAETLRLAFKPTKCASLSLSCRHGTSVLPREYTVQGHLMPALDEEEQYRYLGVPFGLPRFTNLKDLIGKLKGNIETIASSLLAPWQKLDAIKTFVQPGLSFVLRAADYLKSDL----------RSLKSAITTNVKKICQLPLRAANAYIFAAKESGGLAFIDPNVDADIQVITQAVRVLSSDDEVVQTIATSQLKSVVHRTIH-AVPTEEDIDNYLSGSNEGLLANSGNSGQASSLWSRTRSAARRLHLTLRATTSGTV--VVNQQADIDHTRDILPASITRGL------RLIQRTTNAEKLKSLPDQGKVARSLSNDPFANGSSWHATGKFIRFCDWRFIHRARLNCLPTNVATKRW-KANANGKNGHQQETLPHVLNHCLPNMVPIRRRHDNIQQRLVTAIRHGDVFVN-----QHVPGDPNPRERPDITVIEGNKVTV--IDISVPFDNGPNACTTAAQAKVEKYSALRQALRDM--GRDVEVHGFIVGALGTWHQGNERALGRLGVSRWYRTLMRKLCCIDAIQASRDIWVEHVTGH 1792
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 143.28 bits (360), Expect = 1.528e-33 Identity = 120/449 (26.73%), Postives = 212/449 (47.22%), Query Frame = 1 Query: 4699 SSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKC-AYLTTSNST-----DXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAII 6027 ++PG D IT + L DP G+ L R + + G +P ++ +T LIPK + E+ +WRPI + S ++F+ I++ RL N P Q+G GC E+ +L + H K +++ LA+ ++D AF S+ H ++ L +D H + +++ Y + + +P I +K GV+QG +S ILFNLA++P++ ++ + + YKIG S + LA+ADD+ L+++S +++ I E R GL + KC +L +T D + L + ++ E +YLGV V T D +L ++ + L P+QKV F RL + ++K + L +R + G+ +LP + +YS + GG + L ++ + +RLL + I + I+ Sbjct: 442 TAPGPDRITRQMLSDWDPSGEKLERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLARACPIN----PRQRGFISAPGCAENLKVLQGLIGHCK-KERSQLAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQGDSMSPILFNLAMDPLIQSLENLG-SGYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGATSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKVNPWVGITKPDLNSQLGEWVTRIGGAPLKPYQKVGLLNDFAIPRLIYLADHCDLKGVTLA----------TLDGTIRRAVKGWLHLPLSTCGGLLYSRVQDGGLGILKLEALVPSIQARRLYRLLGSEDEIMNQIM 874
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 108.612 bits (270), Expect = 6.881e-23 Identity = 64/217 (29.49%), Postives = 112/217 (51.61%), Query Frame = 1 Query: 4693 SASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPG-QKGG-SVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVA 5337 + S+PG + + YR + K L + + G IP W +LIPK S + + +RPI+LL+ KIF S+++RRL ++ N L+ QK G + F GC+EHN+++ ++ ++ KK L + +LD+ +AFGSVPH LW + V +++ + + + G T ++ G+ GC IS++ F +A+ ++ A Sbjct: 386 AGSAPGPNGVPYRSYKSAPDVLKFLWKLMAIVWKKGIIPKEWHRAGGVLIPKEKDSVAIDQ---FRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTARAEKK-DLHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGCTISLLAFTMAMEVIIRA 598
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000052982.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000409.1:21:5030:-1 gene:ENSAMXG00000036080.1 transcript:ENSAMXT00000052982.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.834 bits (255), Expect = 3.738e-21 Identity = 101/345 (29.28%), Postives = 158/345 (45.80%), Query Frame = 1 Query: 4762 LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKG---GSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSP-IAKYKI-GNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTP----YDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFR 5769 LL R FN I N + PD+ +I K GK + D +S+RPIALL+ KI + +L+ RL I+D ++HP Q G G G N L HS P AI LD + AF V Y++ L+ G F+++++ LY + S + ++RGVRQG P+S +LFNLA+ P+ + I + P I I G + L D + I+N AT + L++ G KC ++ +N+ D N + + E + YLG+ + ++P T + L+KL + + K L K++A K R + F+ Sbjct: 497 LLLRMFNDSIANNRFPDSLYQANISVILKKGKIKT--DPASYRPIALLNVDQKIISKVLANRLAHHISD--IIHPDQTGFIPGRFSFG----NVRLLLNTIHSAQQGSVPAAILSLDAQKAFDQVEWPYMFYTLSKFGFGTPFINLVKALYLHPCSSILTNSNRSLPFPLQRGVRQGDPLSPLLFNLALEPLAIGIRNHPDIHGITINGLETLVNLYADDLLLSISNPATSVPKLLDYINLFGRLSGYTINWNKCEFMPLTNNFDQNFLSALPFNIT----NEHFTYLGLQISKNPKTTIKLNYENALDKLKKEIARWKLLPLSMIGKINAIKMIILPRYLYLFQ 829
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000033573.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:31407009:31410218:-1 gene:ENSAMXG00000030324.1 transcript:ENSAMXT00000033573.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 101.679 bits (252), Expect = 8.124e-21 Identity = 68/215 (31.63%), Postives = 111/215 (51.63%), Query Frame = 1 Query: 4684 KLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPG-QKGG-SVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAIN 5322 K S+S+PG + Y+ + + L + I G++ WR + + IPK S ++ +R I+LLS KIF SIL+RRLT++++ N + QKGG GC+EH ++T + ++ K LA+ WLD+ +A+GS+PH + L V G ++ Y + G +T+ ++ G+ GC IS+ILF LA+N Sbjct: 268 KARSSSAPGPSGVPYKVYKNCPLLLERLWKILKVIWRRGKVARQWRFAEGVWIPKEEVS---KNIDQFRIISLLSVEGKIFFSILARRLTDFLSSNHYIDTSVQKGGIPGVPGCLEHTGVVTQLIREAR-ENKGDLAVLWLDLANAYGSIPHKLVQTTLERHHVPGQVAELIMNYYDQFSMRVSTGSITSEWHRVEVGIITGCTISVILFVLAMN 478
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000029797.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:11908834:11912265:1 gene:ENSAMXG00000039541.1 transcript:ENSAMXT00000029797.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.2117 bits (243), Expect = 1.056e-19 Identity = 63/220 (28.64%), Postives = 110/220 (50.00%), Query Frame = 1 Query: 4684 KLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPG-QKGG-SVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVA 5337 K S S+PG + I Y+ + K++ + N +P W+ + IPK S + TS +R IALL+ KIF ++L+RR+ +++ N + QK G F GC+EH ++ ++ +K +K+ L + WLD+ +A+GSVPH + L + + ++I+ ++N + T ++ G+ GC IS ILF A +L+ Sbjct: 348 KARSGSAPGPNGIPYKLYKHCPQVTKIVWNLMRVVWKNKSVPAEWQEAVGIFIPKEQNSTT---TSQFRSIALLNVEGKIFFTVLARRIAQFLKSNSYIDTSCQKAGLPGFPGCIEHATMIWEQIQRAK-REKSDLHVVWLDMANAYGSVPHKLVEFALEFFYIPDCIITIIGKYFSNLRMSFVMDGFATGWQQLEVGIAMGCSISPILFVAAFEVILIG 563
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Match: EDO47846 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKZ5]) HSP 1 Score: 52.7582 bits (125), Expect = 6.965e-8 Identity = 38/109 (34.86%), Postives = 54/109 (49.54%), Query Frame = 1 Query: 4684 KLASASSPGDDNITYRDLRL----LDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKG 4998 KL + +PG D I L+ L P +++ FN I+D G PD W +I KSG D S +R I + S K+F IL+ RL ++T N++LH Q G Sbjct: 2 KLKNNKAPGIDRIRNEMLKCGQQTLVP---CISKIFNLILDAGVYPDVWTRG---IISAIYKSGDKSDPSDYRGICVTSCLGKLFCFILNNRLQTFLTSNQILHQSQIG 104
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000039772.1 (pep primary_assembly:ASM223467v1:15:12930252:12933724:1 gene:ENSORLG00000026021.1 transcript:ENSORLT00000039772.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 101.679 bits (252), Expect = 6.711e-21 Identity = 79/280 (28.21%), Postives = 131/280 (46.79%), Query Frame = 1 Query: 4687 LASASSPGDDNITYRDLRLLDPEGK-LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAI-LTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYL 5520 L+ +PG D +T + K L+ F +II NG + + LIPKPGK ++ D + RPI LL+T YK+ T I S R IT +++ Q G +G HN + L + ++ I +LD AF + H +++ L + G F++ ++ Y T+S C T+ + +I +G++QGCPIS +LF A + + I + K + N++ I ADD + N+ D+ ++ + GL+ KC L Sbjct: 61 LSKDKAPGCDGLTSNFYKFFWEHIKDLIFEMFKEIIQNGSLTHTMKQGVITLIPKPGKDPTFLD--NLRPITLLNTDYKLLTHIFSNRFKSDIT--QIISETQSG--FIKGRSIHNNLRLVLDMIDYEHLIDTDGFILFLDFYKAFDMIEHNFMFQTLQFFGFGNKFINTVKTFYYETSSSVCLPQGTSHRFNISKGIKQGCPISPLLFIAAAEMLSLLIKHTDFGKLTVANAEFSISQLADDTTIFLNNLHDIPKILKTIDFFSKASGLKLNLNKCEIL 334
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000042085.1 (pep primary_assembly:ASM223467v1:19:3759893:3763624:1 gene:ENSORLG00000027203.1 transcript:ENSORLT00000042085.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.064 bits (253), Expect = 7.507e-21 Identity = 81/281 (28.83%), Postives = 137/281 (48.75%), Query Frame = 1 Query: 4687 LASASSPGDDNITYRDLRLLDPEGK-LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAI-LTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRI-GLEFRPEKCAYL 5520 L++ +PG D +T + K L+ F +II NG + + LIPKPGK ++ D + RPI LL+T YK+ T I S R IT +++ Q G +G HN + L + ++ I +LD AF + H +++ L + G F++ ++ Y T+S C T+ + +I +G++QGCPIS +LF A + + I + K + N++ I ADD + N+ D+ ++ +++I S+ GL+ KC L Sbjct: 464 LSNDKAPGCDGLTSNFYKFFWQHIKDLIFEMFKEIIQNGSLTHTMKQGVITLIPKPGKDPTFLD--NLRPITLLNTDYKLLTHIFSNRFKSDIT--QIISETQSG--FIKGRSIHNNLRLVLDMIDYEHLIDTDGFILFLDFYKAFDMIEHNFMFQTLQFFGFGNKFINTVKTFYYETSSCVCLPQGTSHRFNINKGIKQGCPISPLLFIAAAEMLSLLIKHTDFGKLTVANAEFSISQLADDTTIFLNNLHDIPKIL-KTIDIFSKASGLKLNLNKCEIL 737
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000045648.1 (pep primary_assembly:ASM223467v1:16:7714608:7718339:-1 gene:ENSORLG00000027038.1 transcript:ENSORLT00000045648.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.064 bits (253), Expect = 7.831e-21 Identity = 81/281 (28.83%), Postives = 137/281 (48.75%), Query Frame = 1 Query: 4687 LASASSPGDDNITYRDLRLLDPEGK-LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAI-LTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRI-GLEFRPEKCAYL 5520 L++ +PG D +T + K L+ F +II NG + + LIPKPGK ++ D + RPI LL+T YK+ T I S R IT +++ Q G +G HN + L + ++ I +LD AF + H +++ L + G F++ ++ Y T+S C T+ + +I +G++QGCPIS +LF A + + I + K + N++ I ADD + N+ D+ ++ +++I S+ GL+ KC L Sbjct: 464 LSNDKAPGCDGLTSNFYKFFWQHIKDLIFEMFKEIIQNGSLTHTMKQGVITLIPKPGKDPTFLD--NLRPITLLNTDYKLLTHIFSNRFKSDIT--QIISETQSG--FIKGRSIHNNLRLVLDMIDYEHLIDTDGFILFLDFYKAFDMIEHNFMFQTLQFFGFGNKFINTVKTFYYETSSSVCLPQGTSHRFNINKGIKQGCPISPLLFIAAAEMLSLLIKHTDFGKLTVANAEFSISQLADDTTIFLNNLHDIPKIL-KTIDIFSKASGLKLNLNKCEIL 737
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000045921.1 (pep primary_assembly:ASM223467v1:18:29376025:29377426:1 gene:ENSORLG00000028454.1 transcript:ENSORLT00000045921.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 96.2857 bits (238), Expect = 1.342e-20 Identity = 67/206 (32.52%), Postives = 104/206 (50.49%), Query Frame = 1 Query: 4738 RLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPI 5355 ++L P +L FN NG +P + +L+PKPGK + + RPI+LL++ KI IL+ RL + ++H Q G + + HN + H A A+ D + AF V +L+++LA +G F ++LLYTN + + I+IKRG RQGCP+S +LF LAI P+ +A+ + PI Sbjct: 90 KILKPMLDMLQESFN----NGALPKSMTCALIILLPKPGKPSN--KCENMRPISLLNSDLKIICKILAMRLQNTLP--HVVHRDQNGFILGRQGL-HNVRRVLNIIHG-LEDTADQALLSFDAEKAFDKVEWPFLFNVLAKLGFGETFRKWIQLLYTNPTAEILTNKNISAPIEIKRGCRQGCPLSPLLFTLAIEPLAIAVRAHPI 285
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000029493.1 (pep primary_assembly:ASM223467v1:9:31095018:31097924:1 gene:ENSORLG00000028372.1 transcript:ENSORLT00000029493.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 100.138 bits (248), Expect = 1.997e-20 Identity = 78/280 (27.86%), Postives = 131/280 (46.79%), Query Frame = 1 Query: 4687 LASASSPGDDNITYRDLRLLDPEGK-LLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAI-LTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYL 5520 L+ +PG D +T + K L+ F +II NG + + LIPKPGK ++ D + RPI LL+T YK+ T I S R IT +++ Q G +G HN + L + ++ I +LD AF + H +++ L + G F++ ++ Y T+S C T+ + +I +G++QGCPIS +LF A + + I + K + N++ I ADD + N+ D+ ++ + G++ KC L Sbjct: 464 LSKDKAPGCDGLTSNFYKFFWEHIKDLIFEMFKEIIQNGSLTHTMKQGVITLIPKPGKDPTFLD--NLRPITLLNTDYKLLTHIFSNRFKSDIT--QIISETQSG--FIKGRSIHNNLRLVLDMIDYEHLIDTDGFILFLDFYKAFDMIEHNFMFQTLQFFGFGNKFINTVKTFYYETSSCVCLPQGTSHRFNISKGIKQGCPISPLLFIAAAEMLSLLIKHTDFGKLTVANAEFSISQLADDTTIFLNNLHDIPKILKTIDFFSKASGIKLNLNKCEIL 737
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000062936.1 (SMESG000062936.1) HSP 1 Score: 1802.72 bits (4668), Expect = 0.000e+0 Identity = 936/1270 (73.70%), Postives = 1066/1270 (83.94%), Query Frame = 1 Query: 3256 FDEVASNNLTTINEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQFCRTDIVQLSMDHSNVQTIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLIQRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFNIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCDQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPKYLR 7065 FDEVAS+NL INE FII+NITYKQFK+IA+I+CPFRSNDVI FFYNK+ K SF+INT SNH S +L +G+TLTMLFNQFCR++IVQ+S D+S Q +EYDDLN+CK SFK IINSI N +SD+WI+CEF R+ S+K K I +N+IGINAKLD AID+YF+SL+DN+KY LVNETLSDALI+D WQHV+EFLDKT+L +ASIIF IF PPSSGKQLL+IDYEKCTSFLLNPTSS E PLH +TAFILLN+ISS R+N+GAAPLM SP HDIR GLFSNILICSYI+NYLTDRSLFKMDLT VGNKL+SILLPP QNTD K+ +T+ +RR I N L +I CN NEAY+KII+++NK+NIKP KPYLG NFF+ LN+ KMIK+KGGYFHNRKKV T+I++EINI+TRP+MENIL+QFTQ DP EFVF+I ++C +S + +EL +I+A++VIFE K A+ASSPGDDNITYRDLRLLDPEGKLLAR FN IID+GQIP++W SFKT+LIPK PG+ ++LTA LEHSKYSKKAPLAIAWLDIKDAFGSVPH Y+W+LL YIGVD HFVS+LRLLYT TNSYYCCGPL TPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKY++G+S++QILAYADDIALIANSATDLQALI +SVEIASRIGLEFRPEKCAYL+TSNS+D+N + LN++KLKKLKD+EFY YLGVPVGE PNQTPYDTLEKLL+D NK+KNSDLYPWQKVD YKTF HSRL FAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIY FFNLPHNAPKAYIYSPI TGGAAF+DLHDEYS L+IVQAFRLLTCKCP TSA+I DSLRFVASTRIRIS PSISQCLEWINGKS+ KNSLS+KTWWIRFR+AI HL+NTRGI I LEYDGFFSLRIT EHRGTTIIYSLDRKKLA FLHKL+QETY+MDL NGK+NNFIA+TYV CPLINKAIFKS+LN VSWNF+HRARTNTLA+NARPQN S+ +RKCRKCDQVET+SHVLQSC SNG+LINERHN+CL K+YN IKS +KI LDQKC+LV D KRVDLLIRDNKN TIKLVD+KCPLDTEFNF N+++LN+ KY++LK +E A P+YKVTLSTCIFGSLGS+P T +L +IGVK DR SL+V CA+SNIEYSARIW FHSTGNDI+PKYLR Sbjct: 308 FDEVASDNLIVINETFIIDNITYKQFKEIAYIVCPFRSNDVIHIFFYNKISKISFVINTLSNHLLS-NLKIIGETLTMLFNQFCRSEIVQMSTDYSKAQFMEYDDLNVCKSSFKIIINSINNNNISDDWIDCEFGRYIDNSIKANK---IPLTTLNVIGINAKLDGFAIDKYFQSLLDNDKYFLVNETLSDALISDSWQHVAEFLDKTKLLDASIIFVIFVPPSSGKQLLIIDYEKCTSFLLNPTSSKEIPLHVETAFILLNYISSVRNNVGAAPLMTSPLHDIRTCGLFSNILICSYITNYLTDRSLFKMDLTCVGNKLESILLPPKQNTDQNILKLPLICKTINERRKICNILLAEIATCNANEAYSKIISAVNKSNIKPEHKPYLGKNFFNSLNSDNKMIKIKGGYFHNRKKVATRILDEINIDTRPSMENILNQFTQMDPDEFVFSISDYCTKSKEIIELDQITAKEVIFEYKQANASSPGDDNITYRDLRLLDPEGKLLARLFNIIIDSGQIPNDWLSFKTILIPK---------------------------------------------PGK-------------SVLTAVLEHSKYSKKAPLAIAWLDIKDAFGSVPHAYIWNLLTYIGVDEHFVSVLRLLYTKTNSYYCCGPLITPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYRMGDSEVQILAYADDIALIANSATDLQALIESSVEIASRIGLEFRPEKCAYLSTSNSSDINGVNLNDVKLKKLKDKEFYHYLGVPVGECPNQTPYDTLEKLLSDANKIKNSDLYPWQKVDMYKTFLHSRLHFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYSFFNLPHNAPKAYIYSPIETGGAAFIDLHDEYSILTIVQAFRLLTCKCPNTSAVIHDSLRFVASTRIRISGPSISQCLEWINGKSYKKNSLSKKTWWIRFRDAILHLKNTRGIDILLEYDGFFSLRITAEHRGTTIIYSLDRKKLASFLHKLVQETYYMDLHNGKLNNFIADTYVKCPLINKAIFKSRLNTVSWNFVHRARTNTLAINARPQNKSDEARKCRKCDQVETLSHVLQSCNSNGILINERHNACLRKLYNLIKSPDKITVLDQKCDLVENDSKRVDLLIRDNKNKTIKLVDVKCPLDTEFNFINTHELNMSKYNDLKLNIEKALPNYKVTLSTCIFGSLGSIPDKTFDVLDDIGVKFTDRNSLSVECALSNIEYSARIWQFHSTGNDINPKYLR 1515 HSP 2 Score: 330.487 bits (846), Expect = 2.836e-91 Identity = 159/203 (78.33%), Postives = 175/203 (86.21%), Query Frame = 1 Query: 2440 EIVRRTVDENSENDVNSPFYKTRSHIKAKGKPKECPS--DSPSLSSVLIDKYGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKT 3042 EI+ ++ +V+SPF KTRS IK K + KE SLS+ LIDKYGPHDK+KWFTDLDIS YLEWKIN DKHFALNAGIVDAIASK++DYKPPLLERLVKCDT+LCPLNIKN+HWVLFVY KS++ESFVMDPLPVPFEPEETALRA+AVNDCFNKLFKINSKIIDNKYPTAKKQ NSNDCGPIICGYAKKISF + Sbjct: 109 EILNDPSGDSCAGEVSSPFCKTRSQIKFKDRVKETERVPMPQSLSATLIDKYGPHDKSKWFTDLDISSYLEWKINDDKHFALNAGIVDAIASKLDDYKPPLLERLVKCDTILCPLNIKNQHWVLFVYIKSSSESFVMDPLPVPFEPEETALRAAAVNDCFNKLFKINSKIIDNKYPTAKKQANSNDCGPIICGYAKKISFDEV 311
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 987.638 bits (2552), Expect = 0.000e+0 Identity = 626/1522 (41.13%), Postives = 860/1522 (56.50%), Query Frame = 1 Query: 2599 DKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXXKENISVLVFDEVASNNLTTI------------NEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQFCRTDIVQLSMDHSNVQ--TIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLI-----------QRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGG-----YFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVF-NIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITIS-LEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPKYL 7062 D WFTD DI YL+ I+ + ++N IV+ + + + P+ E++ K +LCPLNI HW+LFVY K++ S+ +DP+ A V N+LF + + + + + Q NS DCGP IC YA IS IRKE H ++L + + ++ R + F IS L+ + + TT+ N FI EN+T++QF I II ++ F ++ ++ +S+I N + + L +G+ +T N+F ++ + + N++ +I DD L +F +I S+ + EF LK +K C+NL IN K++ +YF +L N+ ++L+NET+ A+++DC +H+++FL+ +L A +IFAI PP + LL+IDY +++NPT+ I N I+ ++ G M P+DIR SGL S +LIC++I NY D L ++L +G + S LLP +E++KI+ S T I QR+ + L + + VNE II +K KPYLG N T+ K+ G + + K V K+ N N+ RP + I+ F P + N FC RS + L L S +++F+LK A +SPG D I YRDL LLDPEGKLL FNKII N IPD+W+SFKTLL PKP K G Y+D SSWRPIALLS YK+F S L+ RLT WI N LLH GQKGGS +GCVEHN+IL+AALEHSKYSK PLAIAWLDIKDAFGSVPH Y+W LL +IGV F SIL+LLY++T+++Y CGP+ TP I IK+GV+QGCPISMILF LAINPVL A+S S + IG S ++ILAYADDIALIA S DLQ + N +V A+ IG E+RPEKC YL + I++NN K+KKL +EFYQYLGVPVGE P+Q+PYD L+K ++DT KL NS+L WQK+ AYK F HSRL F FRTREIK A+ + + ++ + N+S+QLR LP+ + +Y Y+ GGA VDL DEY T +I FRLLT +C I DSL+FV R+ I PS+ + L+W NGK + RKT + R R A+ T I++S + D SL ITT RGT I+ S RK + LH + ++Y ++NFIA+ P INKAIF+S+L+ +WNFIHRARTNTL++ A+ N + R CR C + ETMSH +QSCK + L ERHN CL I +++ K+S I+ +D C LVP +RVDL+I D I LVD+KCP D+ NF+ + LNL KYD LK++++ P +KV L TC+FGSLGS P T IL +IGVK + L CA+SNI +SAR WHFH TG +DP+ + Sbjct: 4722 DPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQ----LQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFN-FHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEF-------LKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISS-LLP----IISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEI-IDIIVRQFPDRVKSKHKPYLG--------NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGD-KRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKM 6216 HSP 2 Score: 980.319 bits (2533), Expect = 0.000e+0 Identity = 625/1516 (41.23%), Postives = 858/1516 (56.60%), Query Frame = 1 Query: 2599 DKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXXKENISVLVFDEVASNNLTTINEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQFCRTDIVQLSMDHSNVQ--TIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLI-----------QRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGG-----YFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFN-IQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITIS-LEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPK--YLRHVN 7074 D WFTD DI YL+ I+ + ++N IV+ + + + P+ E++ K +LCPLNI HW+LFVY K++ S+ +DP+ A V N+LF + + + + + Q NS DCGP IC YA IS IRKE H ++L + + ++ R + F IS L+ + + TT+ + NI + + II P SN + F ++ ++ +S+I N + + L +G+ +T N+F ++ + + N++ +I DD L +F +I S+ + EF LK +K C+NL IN K++ +YF +L N+ ++L+NET+ A+++DC +H+++FL+ +L A +IFAI PP + LL+IDY +++NPT+ I N I+ ++ G M P+DIR SGL S +LIC++I NY D L ++L +G + S LLP +E++KI+ S T I QR+ + L + + VNE II +K KPYLG N T+ K+ G + + K V K+ N N+ RP + I+ F P + +N FC RS + L L S +++F+LK A +SPG D I YRDL LLDPEGKLL FNKII N IPD+W+SFKTLL PKP K G Y+D SSWRPIALLS YK+F S L+ RLT WI N LLH GQKGGS +GCVEHN+IL+AALEHSKYSK PLAIAWLDIKDAFGSVPH Y+W LL +IGV F SIL+LLY++T+++Y CGP+ TP I IK+GV+QGCPISMILF LAINPVL A+S S + IG S ++ILAYADDIALIA S DLQ + N +V A+ IG E+RPEKC YL + I++NN K+KKL +EFYQYLGVPVGE P+Q+PYD L+K ++DT KL NS+L WQK+ AYK F HSRL F FRTREIK A+ + + ++ + N+S+QLR LP+ + +Y Y+ GGA VDL DEY T +I FRLLT +C I DSL+FV R+ I PS+ + L+W NGK + RKT + R R A+ T I++S + D SL ITT RGT I+ S RK + LH + ++Y ++NFIA+ P INKAIF+S+L+ +WNFIHRARTNTL++ A+ N + R CR C + ETMSH +QSCK + L ERHN CL I +++ K+S I+ +D C LVP +RVDL+I D I LVD+KCP D+ NF+ + LNL KYD LK++++ P +KV L TC+FGSLGS P T IL +IGVK + L CA+SNI +SAR WHFH TG +DP+ Y VN Sbjct: 2380 DPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQ----LQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQISHSLEKIIVPNDSNWSL--FVFSLVLGNSYIFN-FHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEF-------LKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISS-LLP----IISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEI-IDIIVRQFPDRVKSKHKPYLG--------NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGD-KRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKIYKNEVN 3866 HSP 3 Score: 511.531 bits (1316), Expect = 3.611e-145 Identity = 296/627 (47.21%), Postives = 402/627 (64.11%), Query Frame = 1 Query: 5149 LLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLE-YDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKC-DQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWH 7023 LL ++ V FV+IL+LLYT+T+S+Y C + TP I IK+GV+QGCPISMILF +AINPVL AIS S + IG S +Q+LAYADDIALIA +++DLQ L + +V A+ IG E+RPEKCAY+ ++ II+NN+ +KKL EFYQYLGVP+G++ +Q+PY+ + K++ DT K+ +S+LY WQK+ AYK F HSRL F FRTREIK S++ PS N N ++QLR + NLP+++ +Y Y+ GGA +DL DEY +IV FRLLT C + I SL V S R+ I +P++SQ EWINGK N RKT + R R +I++ I + E + S+RITT GT II RK L+ LH +Q++Y +N + + CPL+NK IF+S L W FIHRARTNTL+ A+P E R CR+C + ET+ HVLQ+CK N L RHN+CL KI +SIK E ++ +D KC LVP +RVDL+I + + TI LVD+KCP+D+ NFQ + LNL+KY +LK ++ P YKV L TCI GSLGS+ S T+ +L ++GV+ + L CAISNI +SA+I + Sbjct: 902 LLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGE-DRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKDPELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527 HSP 4 Score: 233.032 bits (593), Expect = 1.964e-60 Identity = 215/766 (28.07%), Postives = 356/766 (46.48%), Query Frame = 1 Query: 2470 SENDVNSPFYKTRSHIKAKGKPKECPSDSPSLSSVLIDKYGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXX------------KENISVLVFDEVASNNLTTINEDFIIENITYKQFKDIAFIICPF-RSNDVILTFFYNKLIKSSFIINTASNHHPSTD-LTHVGKTLTMLFNQFCRTDIVQLSMDH--SNVQTIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDN---ETRKIIPSGQT----LIQRRHISNCLQVQIVNCNVNE---AYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSD-PGEFVFNIQEFCIRSNKPLELCKISARDVIFELK 4686 +EN +N P +T K +P + P + + ID P WF+D DI YLE I+ H + IV+ + S +++ + + + V CPLNI N HW+LFVY K + S+ +DP+ A +N N+ F + + N + + Q N+ DCGP C YA IS + EIR++ H + I + + D+ + + +++ + N V V + NL N FI +N+T+KQFK I I+C + ND L F Y+ +K S I + N+ D L +G +T NQFC V+ +H S+ + YD FI+ + +V + ++C+ + ++ +S ++ I SP +NLI N K+ I YF L ++ Y+L+N+TL A+ +DC Q++ +FL+ + A++IFAI +PP + LLVIDY + L+P ++ N + + +L I+ R++ G A HDIR SGL S ILIC++I NY D SL ++L +G K+ + L+P +DN E R+ + + T L QR+ N L +++ + +V+E I + K +PYLG N +N K + N K V +I+N+ +++ P + I++ FT D E N+ +F S++ LEL IS+ +++ L+ Sbjct: 155 TENIINPPTKRTGQRNTVKKQPSK-PKSTICNKYLTIDNRDPE---IWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCL-FIYSIKLKHSHIFDF--NYRTIDDRLIEIGVKITDYLNQFCLNRNVKFLANHHISHSTFLSYDTQYFAS---HFIV--LFEKLVYEIHLDCD-KVYDSLSKIKTETCIEISPGLNLI--NGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIG-KIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKN-----HNKPKKFNNPAEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899 HSP 5 Score: 109.768 bits (273), Expect = 3.807e-23 Identity = 87/320 (27.19%), Postives = 148/320 (46.25%), Query Frame = 2 Query: 1319 DTAFDLSSGGTDILFNLGHVNFRKLSKSNDELRETLQIANPKEKLIKLIFLLNCLKIEGKISKTSKISNNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYNYANNLLEQSKLFKSKNHDKELTSNAVSFTLNILRFKINLLNRGLAKCFYSKSTKTTCPYDQGIVITELIDFLTAFLLKKFKDEIPKFALPLKPETVKSAKVGDR---VTLVSSVKLKKTNPNKITLVPTGDYVSEPVVESNMNLYSETK 2269 D+ + G +DI+FN+G +NF ++ + LR EK+I +IF LN L+++G++ TS S ++ NY+ NC L+S++ ++ +++ E W P +++ I S++ ++C E LL LR+ KL E D L+N+I P I INS I+K Q NL KS++ D E + A F ++R K + L YS C + I T + + + + +L L S ++ DR +TLV++ + + NP +G V VVE+ ++ K Sbjct: 2027 DSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSES-DDETIAKAKRFLFFVIRDK----KKFLLGSKYSYRIPLHC---RKICTTNMTTHIFSIIQ----------SLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPG----TQSGSIVDISVVETGSTEHARVK 2324 HSP 6 Score: 109.768 bits (273), Expect = 3.807e-23 Identity = 87/320 (27.19%), Postives = 148/320 (46.25%), Query Frame = 2 Query: 1319 DTAFDLSSGGTDILFNLGHVNFRKLSKSNDELRETLQIANPKEKLIKLIFLLNCLKIEGKISKTSKISNNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYNYANNLLEQSKLFKSKNHDKELTSNAVSFTLNILRFKINLLNRGLAKCFYSKSTKTTCPYDQGIVITELIDFLTAFLLKKFKDEIPKFALPLKPETVKSAKVGDR---VTLVSSVKLKKTNPNKITLVPTGDYVSEPVVESNMNLYSETK 2269 D+ + G +DI+FN+G +NF ++ + LR EK+I +IF LN L+++G++ TS S ++ NY+ NC L+S++ ++ +++ E W P +++ I S++ ++C E LL LR+ KL E D L+N+I P I INS I+K Q NL KS++ D E + A F ++R K + L YS C + I T + + + + +L L S ++ DR +TLV++ + + NP +G V VVE+ ++ K Sbjct: 4376 DSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSES-DDETIAKAKRFLFFVIRDK----KKFLLGSKYSYRIPLHC---RKICTTNMTTHIFSIIQ----------SLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPG----TQSGSIVDISVVETGSTEHARVK 4673
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 987.252 bits (2551), Expect = 0.000e+0 Identity = 626/1522 (41.13%), Postives = 860/1522 (56.50%), Query Frame = 1 Query: 2599 DKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXXKENISVLVFDEVASNNLTTI------------NEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQFCRTDIVQLSMDHSNVQ--TIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLI-----------QRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGG-----YFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVF-NIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITIS-LEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPKYL 7062 D WFTD DI YL+ I+ + ++N IV+ + + + P+ E++ K +LCPLNI HW+LFVY K++ S+ +DP+ A V N+LF + + + + + Q NS DCGP IC YA IS IRKE H ++L + + ++ R + F IS L+ + + TT+ N FI EN+T++QF I II ++ F ++ ++ +S+I N + + L +G+ +T N+F ++ + + N++ +I DD L +F +I S+ + EF LK +K C+NL IN K++ +YF +L N+ ++L+NET+ A+++DC +H+++FL+ +L A +IFAI PP + LL+IDY +++NPT+ I N I+ ++ G M P+DIR SGL S +LIC++I NY D L ++L +G + S LLP +E++KI+ S T I QR+ + L + + VNE II +K KPYLG N T+ K+ G + + K V K+ N N+ RP + I+ F P + N FC RS + L L S +++F+LK A +SPG D I YRDL LLDPEGKLL FNKII N IPD+W+SFKTLL PKP K G Y+D SSWRPIALLS YK+F S L+ RLT WI N LLH GQKGGS +GCVEHN+IL+AALEHSKYSK PLAIAWLDIKDAFGSVPH Y+W LL +IGV F SIL+LLY++T+++Y CGP+ TP I IK+GV+QGCPISMILF LAINPVL A+S S + IG S ++ILAYADDIALIA S DLQ + N +V A+ IG E+RPEKC YL + I++NN K+KKL +EFYQYLGVPVGE P+Q+PYD L+K ++DT KL NS+L WQK+ AYK F HSRL F FRTREIK A+ + + ++ + N+S+QLR LP+ + +Y Y+ GGA VDL DEY T +I FRLLT +C I DSL+FV R+ I PS+ + L+W NGK + RKT + R R A+ T I++S + D SL ITT RGT I+ S RK + LH + ++Y ++NFIA+ P INKAIF+S+L+ +WNFIHRARTNTL++ A+ N + R CR C + ETMSH +QSCK + L ERHN CL I +++ K+S I+ +D C LVP +RVDL+I D I LVD+KCP D+ NF+ + LNL KYD LK++++ P +KV L TC+FGSLGS P T IL +IGVK + L CA+SNI +SAR WHFH TG +DP+ + Sbjct: 4664 DPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQ----LQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFN-FHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEF-------LKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISS-LLP----IISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEI-IDIIVRQFPDRVKSKHKPYLG--------NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGD-KRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKM 6158 HSP 2 Score: 982.245 bits (2538), Expect = 0.000e+0 Identity = 632/1548 (40.83%), Postives = 873/1548 (56.40%), Query Frame = 1 Query: 2512 HIKAKGKPKECPSDSPSLSSVLIDK---YGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXXKENISVLVFDEVASNNLTTINEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQFCRTDIVQLSMDHSNVQ--TIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQTLI-----------QRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGG-----YFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFN-IQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITIS-LEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTGNDIDPK--YLRHVN 7074 H + K + +E +DS ++ + I+K D WFTD DI YL+ I+ + ++N IV+ + + + P+ E++ K +LCPLNI HW+LFVY K++ S+ +DP+ A V N+LF + + + + + Q NS DCGP IC YA IS IRKE H ++L + + ++ R + F IS L+ + + TT+ + NI + + II P SN + F ++ ++ +S+I N + + L +G+ +T N+F ++ + + N++ +I DD L +F +I S+ + EF LK +K C+NL IN K++ +YF +L N+ ++L+NET+ A+++DC +H+++FL+ +L A +IFAI PP + LL+IDY +++NPT+ I N I+ ++ G M P+DIR SGL S +LIC++I NY D L ++L +G + S LLP +E++KI+ S T I QR+ + L + + VNE II +K KPYLG N T+ K+ G + + K V K+ N N+ RP + I+ F P + +N FC RS + L L S +++F+LK A +SPG D I YRDL LLDPEGKLL FNKII N IPD+W+SFKTLL PKP K G Y+D SSWRPIALLS YK+F S L+ RLT WI N LLH GQKGGS +GCVEHN+IL+AALEHSKYSK PLAIAWLDIKDAFGSVPH Y+W LL +IGV F SIL+LLY++T+++Y CGP+ TP I IK+GV+QGCPISMILF LAINPVL A+S S + IG S ++ILAYADDIALIA S DLQ + N +V A+ IG E+RPEKC YL + I++NN K+KKL +EFYQYLGVPVGE P+Q+PYD L+K ++DT KL NS+L WQK+ AYK F HSRL F FRTREIK A+ + + ++ + N+S+QLR LP+ + +Y Y+ GGA VDL DEY T +I FRLLT +C I DSL+FV R+ I PS+ + L+W NGK + RKT + R R A+ T I++S + D SL ITT RGT I+ S RK + LH + ++Y ++NFIA+ P INKAIF+S+L+ +WNFIHRARTNTL++ A+ N + R CR C + ETMSH +QSCK + L ERHN CL I +++ K+S I+ +D C LVP +RVDL+I D I LVD+KCP D+ NF+ + LNL KYD LK++++ P +KV L TC+FGSLGS P T IL +IGVK + L CA+SNI +SAR WHFH TG +DP+ Y VN Sbjct: 2320 HARVKRRLEETDADS-TIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQ----LQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQISHSLEKIIVPNDSNWSL--FVFSLVLGNSYIFN-FHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEF-------LKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISS-LLP----IISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEI-IDIIVRQFPDRVKSKHKPYLG--------NKTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGD-KRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEKIYKNEVN 3837 HSP 3 Score: 511.146 bits (1315), Expect = 4.296e-145 Identity = 296/627 (47.21%), Postives = 402/627 (64.11%), Query Frame = 1 Query: 5149 LLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLE-YDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKC-DQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWH 7023 LL ++ V FV+IL+LLYT+T+S+Y C + TP I IK+GV+QGCPISMILF +AINPVL AIS S + IG S +Q+LAYADDIALIA +++DLQ L + +V A+ IG E+RPEKCAY+ ++ II+NN+ +KKL EFYQYLGVP+G++ +Q+PY+ + K++ DT K+ +S+LY WQK+ AYK F HSRL F FRTREIK S++ PS N N ++QLR + NLP+++ +Y Y+ GGA +DL DEY +IV FRLLT C + I SL V S R+ I +P++SQ EWINGK N RKT + R R +I++ I + E + S+RITT GT II RK L+ LH +Q++Y +N + + CPL+NK IF+S L W FIHRARTNTL+ A+P E R CR+C + ET+ HVLQ+CK N L RHN+CL KI +SIK E ++ +D KC LVP +RVDL+I + + TI LVD+KCP+D+ NFQ + LNL+KY +LK ++ P YKV L TCI GSLGS+ S T+ +L ++GV+ + L CAISNI +SA+I + Sbjct: 902 LLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGE-DRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKDPELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527 HSP 4 Score: 232.646 bits (592), Expect = 2.062e-60 Identity = 215/766 (28.07%), Postives = 356/766 (46.48%), Query Frame = 1 Query: 2470 SENDVNSPFYKTRSHIKAKGKPKECPSDSPSLSSVLIDKYGPHDKAKWFTDLDISCYLEWKINGDKHFALNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCTIKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXX------------KENISVLVFDEVASNNLTTINEDFIIENITYKQFKDIAFIICPF-RSNDVILTFFYNKLIKSSFIINTASNHHPSTD-LTHVGKTLTMLFNQFCRTDIVQLSMDH--SNVQTIEYDDLNLCKLSFKFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDN---ETRKIIPSGQT----LIQRRHISNCLQVQIVNCNVNE---AYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKMIKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSD-PGEFVFNIQEFCIRSNKPLELCKISARDVIFELK 4686 +EN +N P +T K +P + P + + ID P WF+D DI YLE I+ H + IV+ + S +++ + + + V CPLNI N HW+LFVY K + S+ +DP+ A +N N+ F + + N + + Q N+ DCGP C YA IS + EIR++ H + I + + D+ + + +++ + N V V + NL N FI +N+T+KQFK I I+C + ND L F Y+ +K S I + N+ D L +G +T NQFC V+ +H S+ + YD FI+ + +V + ++C+ + ++ +S ++ I SP +NLI N K+ I YF L ++ Y+L+N+TL A+ +DC Q++ +FL+ + A++IFAI +PP + LLVIDY + L+P ++ N + + +L I+ R++ G A HDIR SGL S ILIC++I NY D SL ++L +G K+ + L+P +DN E R+ + + T L QR+ N L +++ + +V+E I + K +PYLG N +N K + N K V +I+N+ +++ P + I++ FT D E N+ +F S++ LEL IS+ +++ L+ Sbjct: 155 TENIINPPTKRTGQRNTVKKQPSK-PKSTICNKYLTIDNRDPE---IWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIVGNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCL-FIYSIKLKHSHIFDF--NYRTIDDRLIEIGVKITDYLNQFCLNRNVKFLANHHISHSTFLSYDTQYFAS---HFIV--LFEKLVYEIHLDCD-KVYDSLSKIKTETCIEISPGLNLI--NGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIG-KIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKN-----HNKPKKFNNPAEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899 HSP 5 Score: 112.079 bits (279), Expect = 6.436e-24 Identity = 94/341 (27.57%), Postives = 158/341 (46.33%), Query Frame = 2 Query: 1319 DTAFDLSSGGTDILFNLGHVNFRKLSKSNDELRETLQIANPKEKLIKLIFLLNCLKIEGKISKTSKISNNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYNYANNLLEQSKLFKSKNHDKELTSNAVSFTLNILRFKINLLNRGLAKCFYSKSTKTTCPYDQGIVITELIDFLTAFLLKKFKDEIPKFALPLKPETVKSAKVGDR---VTLVSSVKLKKTNPNKITLVPTGDYVSEPVVESNMNLYSETKVVSNKTFDARTHKHIIQILPP 2332 D+ + G +DI+FN+G +NF ++ + LR EK+I +IF LN L+++G++ TS S ++ NY+ NC L+S++ ++ +++ E W P +++ I S++ ++C E LL LR+ KL E D L+N+I P I INS I+K Q NL KS++ D E + A F ++R K + L YS C + I T + + + + +L L S ++ DR +TLV++ + + NP +G V VVE+ ++ K +T DA + II+I P Sbjct: 2027 DSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSES-DDETIAKAKRFLFFVIRDK----KKFLLGSKYSYRIPLHC---RKICTTNMTTHIFSIIQ----------SLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPG----TQSGSIVDISVVETGSTEHARVKRRLEET-DADSTIKIIEINKP 2344 HSP 6 Score: 109.768 bits (273), Expect = 3.617e-23 Identity = 87/320 (27.19%), Postives = 148/320 (46.25%), Query Frame = 2 Query: 1319 DTAFDLSSGGTDILFNLGHVNFRKLSKSNDELRETLQIANPKEKLIKLIFLLNCLKIEGKISKTSKISNNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKNSDDIKCQYNYANNLLEQSKLFKSKNHDKELTSNAVSFTLNILRFKINLLNRGLAKCFYSKSTKTTCPYDQGIVITELIDFLTAFLLKKFKDEIPKFALPLKPETVKSAKVGDR---VTLVSSVKLKKTNPNKITLVPTGDYVSEPVVESNMNLYSETK 2269 D+ + G +DI+FN+G +NF ++ + LR EK+I +IF LN L+++G++ TS S ++ NY+ NC L+S++ ++ +++ E W P +++ I S++ ++C E LL LR+ KL E D L+N+I P I INS I+K Q NL KS++ D E + A F ++R K + L YS C + I T + + + + +L L S ++ DR +TLV++ + + NP +G V VVE+ ++ K Sbjct: 4347 DSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSES-DDETIAKAKRFLFFVIRDK----KKFLLGSKYSYRIPLHC---RKICTTNMTTHIFSIIQ----------SLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPG----TQSGSIVDISVVETGSTEHARVK 4644
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1) HSP 1 Score: 837.025 bits (2161), Expect = 0.000e+0 Identity = 567/1510 (37.55%), Postives = 809/1510 (53.58%), Query Frame = 1 Query: 2569 SVLIDKYGPHDKAK-WFTDLDISCYLEWKINGDKHFA-LNAGIVDAIASKMEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPFEPEETALRASAVNDCFNKLFKINSKIIDNKYPTAKKQTNSNDCGPIICGYAKKISFGKTDLNKIMAQEIRKETHHRRCT-------IKLHEDTTHEXXXXXXXXXXXXLVGRGPAXXXXXXXXXXXXXXKENIS----VLVFDEVASNNLTTINEDFIIENITYKQFKDIAFIICPFRSNDVILTFFYNKLIKSSFIINTASNHHPSTDLTHVGKTLTMLFNQF-CRTDIVQLSMDHSNVQ-TIEYDDLNLCKLSF-KFIINSIQNTIVSDEWINCEFERHNPVSLKYMKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQ---------NTDNETRKIIPSGQTLIQRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGD-NFFSPLNNTTKMIKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVFN-IQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSA 7011 S +I+ + P +K WFTD DI YLE I G+ +FA + IV+ ++S +D P+ + L K +LCPLNI HW+LFVY K T S+ +DP+ A + N LF + + + + + Q N+ DCGP IC YA IS + IRK H + T + TT I ++ V S + + KE S + V + NL N FI EN+T++QF + ++I +N + ++ + + S+I+N + L +G+++T N+F T V ++H+ + +D + +F +F+ I+S IN +LK K I C NL IN ++ I +YFK+L + ++ +N + A+++DC +++++FL+ + A +IFAI PP + L +IDY +LLNPT+ N + IL N I+ R++ + PHDIR SGL S IL CSY+SNY D L ++L +GN + S L ++ N NE K + L +R++ + L +++ NV+E + I+ I+ + + KPYLG+ N + +IK + + K V IIN+++++ RP ENI+ F P + ++ + +FC RS+K L+L +S +V+FELK A +SPG D I YRD+ +LDPEGKLL FNKII IPD+W+SFKTLLIPKPGK Y+ SSWRPIALLS YK+F S L+ RLT WI N LLH GQKGGS +GCVEHN+IL++ALEHSKYSK + LAIAWLDIKDAFGSVPH Y+W LL ++G+ +F +R C P ++ S+ I Y ADDIAL++ SA DLQ + N +V IAS IG E+RPEKC Y+ + I++N+IK+K+L EFYQYLGVPVGE +Q+PYD L+K+++DT K+ +SDL WQK+ AYK F HSRL F FRTREIK SA+ + +A ++ N+++QLR+ +LP+++ Y Y+ GGA VDL DEY T +I FRL T C + DSL FVA R+ I +P++ + +WINGK L I F + G SL IT+E RGT I+ RK + LH + ++Y G +NFIA+ P INKAI++ ++ +W+FIHRARTNTL++NA+P N R CR C + ETMSH++QSCK + L +ERHN CL+ I + + K+S I+ +D C LVP +RVDL+I D I LVD+KCP DT NF + LNL KYD LK +++ A P +KV L TCI GSLGS P T +L +IGV L CA+SNI +SA Sbjct: 575 STIINYFFPERDSKIWFTDDDIDYYLESHI-GNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILN-FQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKIN--------ETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSACKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIASEIKKVKSLENNIINENHK---ESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTH-KPYLGNIERVESQINKSNLIK---NFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDMVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPGKGDKYDSVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGLMRNF-----------------------------SIRSKC-----------EPFMIGESAVKILAY------------ADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEPKLGILKEHDINIMF----------------IVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGN-KRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKIQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSA 1998 HSP 2 Score: 245.358 bits (625), Expect = 2.387e-64 Identity = 145/333 (43.54%), Postives = 196/333 (58.86%), Query Frame = 1 Query: 6049 ASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITIS-LEYDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKCD-QVETMSHVLQSCKSNGMLINERHNSCLNKIYNSI-KSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTG 7038 A R+ I +P++ + +WINGK +KT + R R AI + I I + G SL IT+E RGT I+ RK + LH + ++Y G +NFIA+ P INKAI++ ++ +W+FIHRARTNTL++NA+P N R CR C + ETMSH++QSCK + L +ERHN CL+ I + + K+S I+ +D C LVP +RVDL+I D I LVD+KCP DT NF + LNL KYD LK +++ A P +KV L TCI GSLGS P T +L +IGV L CA+SNI +SAR WH+H TG Sbjct: 2049 ADRRLGIINPTLQETFDWINGKEPKPWHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGN-KRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWHYHKTG 2380 HSP 3 Score: 80.1073 bits (196), Expect = 2.892e-14 Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 2 Query: 1319 DTAFDLSSGGTDILFNLGHVNFRKLSKSNDELRETLQIANPKEKLIKLIFLLNCLKIEGKISKTSKISNNNFAYNYILNCGILHSVAPVDELLNFRIENFEMWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKINSLYKFIEKN----SDDIK 1819 D+ F +DI+FNLG + LS+ ++ L L EKL+ +IF LN L ++G ++ + N+ NYI+NC ++HS+ ++ ++N E+W PK+I I + SHY ++C E LL L++ KL E D ++N+I P I +IN+ I+++ SD +K Sbjct: 289 DSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLK 459
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000079542.1 (SMESG000079542.1) HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0 Identity = 454/1129 (40.21%), Postives = 624/1129 (55.27%), Query Frame = 1 Query: 3688 MKSHIIGSPCVNLIGINAKLDVPAIDRYFKSLIDNNKYVLVNETLSDALINDCWQHVSEFLDKTELSNASIIFAIFTPPSSGKQLLVIDYEKCTSFLLNPTSSTENPLHTDTAFILLNFISSFRDNMGAAPLMASPPHDIRASGLFSNILICSYISNYLTDRSLFKMDLTSVGNKLKSILLPPNQNTDNETRKIIPSGQT-----LIQRRHISNCLQVQIVNCNVNEAYXXXXXXXXXXXXXXXFKPYLGDNFFSPLNNTTKM----IKMKGGYFHNRKKVVTKIINEINIETRPNMENILDQFTQSDPGEFVF-NIQEFCIRSNKPLELCKISARDVIFELKLASASSPGDDNITYRDLRLLDPEGKLLARFFNKIIDNGQIPDNWRSFKTLLIPKPGKSGSYEDTSSWRPIALLSTCYKIFTSILSRRLTEWITDNKLLHPGQKGGSVFEGCVEHNAILTAALEHSKYSKKAPLAIAWLDIKDAFGSVPHVYLWDLLAYIGVDGHFVSILRLLYTNTNSYYCCGPLTTPKIDIKRGVRQGCPISMILFNLAINPVLVAISSSPIAKYKIGNSXXXXXXXXXXXXXXXNSATDLQALINNSVEIASRIGLEFRPEKCAYLTTSNSTDXXXXXXXXXXXXXXXDREFYQYLGVPVGESPNQTPYDTLEKLLADTNKLKNSDLYPWQKVDAYKTFFHSRLTFAFRTREIKISAIGRPSAKDSHNKNLSTQLRSIIYGFFNLPHNAPKAYIYSPILTGGAAFVDLHDEYSTLSIVQAFRLLTCKCPITSAIIQDSLRFVASTRIRISDPSISQCLEWINGKSFNKNSLSRKTWWIRFRNAIQHLRNTRGITISLE-YDGFFSLRITTEHRGTTIIYSLDRKKLACFLHKLIQETYHMDLRNGKINNFIANTYVNCPLINKAIFKSKLNLVSWNFIHRARTNTLAVNARPQNTSEISRKCRKC-DQVETMSHVLQSCKSNGMLINERHNSCLNKIYNSIKSSEKIITLDQKCELVPGDGKRVDLLIRDNKNMTIKLVDIKCPLDTEFNFQNSNKLNLDKYDELKSKLEIAFPSYKVTLSTCIFGSLGSVPSATDLILREIGVKDEDRLSLTVGCAISNIEYSARIWHFHSTG 7038 M+S + VNL N K+ + +F +L + ++ +N T++ A++NDC Q+++EFL+ L A I+FAI PP + + L++IDY +LLNP+S N + TA LL I+ ++ L+ + PHDIR SGL S ILIC++I +Y D SL ++L +GN +KS LLP Q+ ++ K + +T L QR + N + + N NVNE N +K+ K K + N K V KI+ I RP +++ + F+ DP + N+ F ++S L L I ++VIFELK A +SPG D I Y D+ + D EGKLL +NKII +PD W+SFKTL+ PKP K Y SSWRPIALLS YKIF SILSRRLT W+ N LLH GQKGGSV +GCVEHN++L++ LEHSKYSK P+ IA+LDIKDAFGSVPH Y+W +L +IGV F + L+LLYT T+SYY CGP+ TP I IK+GV+QGCP+SMILF +AINPVL A++ S + +K+G S IQ+LAYADDIALIAN+ DLQ ++N + ++A IG E+RP+KCAY+ N + E NQ+PY+ L K+++D KL +SDL WQK+ AYKTF HSRLTF FRTR+ KISA+ SA +N +T+LRS + +LP+N+ +Y Y+ + GGA+ DL DEY T +I FRL T C T I DSL+FV R+ ++PS+ WIN + +K + R R AIQ T ITIS E D LR+TT +GT I+ DR+ ++ LH + ++Y +N N I N R CR+C +Q +T+ HVLQ+CK + L RHN CL +I + +KS I+ +D C LV +RVDL+I +N+ TI +VDIKCP D+ F+ NK NL KYD LK +++ A PS+ V + TCI GS+GS +L ++GV E A WH+H TG Sbjct: 38 MQSKMCDEVVVNLNLKNCKITEKLLTNFFINLNLSENFIFLNNTMTTAILNDCTQYLNEFLNIENLMKAKIVFAIIAPPKARQILMIIDYTSDEYYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSGLVSRILICAFIKHYALDLSLENINLRDIGNVIKS-LLPTVQDIIKDSIKNLSDNKTNVKLKLDQRILLINENLLTLQNANVNEMR----------------------------NKISKVPHPKTKFKSSFNQNMKTTVYKILVNDEINERPTIKDHIGNFSHQDPLIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAIHDAEGKLLTLLYNKIITENTMPDVWKSFKTLMTPKPDKGDKYNLISSWRPIALLSVVYKIFASILSRRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMILFAIAINPVLQAVTLSKVKPFKVGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPKKCAYIQLPNVE--------------------------TISEHTNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTRDFKISAL---SANVCNN---TTKLRSHLRKMMSLPNNSEISYFYNSVENGGASCTDLLDEYHTQTISYFFRLFTANCEFTKRINIDSLKFVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKPRFFRPRTAIQFFEKTHNITISFEVLDDKPILRLTTALKGTIILTEFDRRLVSKVLHLALYDSYFTKWKNS---NIIEN----------------------------------------------RLCRRCHNQDKTLPHVLQNCKVHLTLALNRHNDCLQQIVHHLKSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKCPFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVDIFTCIIGSMGSYD-----LLGKMGVP---------------FEKVALSWHYHVTG 1036 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015424 ID=SMED30015424|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=8216bpback to top protein sequence of SMED30015424-orf-1 >SMED30015424-orf-1 ID=SMED30015424-orf-1|Name=SMED30015424-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=288bp MWGPKIIRAINNQSHYHNACSEMLLVLRKHKLQLEYDSLNNVIDPAVISKback to top protein sequence of SMED30015424-orf-2 >SMED30015424-orf-2 ID=SMED30015424-orf-2|Name=SMED30015424-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=194bp SNINRNESTFEINTDYMKLFLDFLKDGKISSSLEFKCRNSNTENPKCKLQback to top protein sequence of SMED30015424-orf-3 >SMED30015424-orf-3 ID=SMED30015424-orf-3|Name=SMED30015424-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=132bp MKTDVSSNKNSYADDFKQSSSTGDFFNGKTIKSAPKSTLNKNSIKMMPNRback to top protein sequence of SMED30015424-orf-4 >SMED30015424-orf-4 ID=SMED30015424-orf-4|Name=SMED30015424-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1198bp MLFNQFCRTDIVQLSMDHSNVQTIEYDDLNLCKLSFKFIINSIQNTIVSDback to top protein sequence of SMED30015424-orf-5 >SMED30015424-orf-5 ID=SMED30015424-orf-5|Name=SMED30015424-orf-5|organism=Schmidtea mediterranea sexual|type=polypeptide|length=152bp MEDYKPPLLERLVKCDTVLCPLNIKNKHWVLFVYEKSTAESFVMDPLPVPback to top Annotated Terms
The following terms have been associated with this transcript:
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