RING-CH-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015368 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16Note: Hover over icons to view figure legend
Homology
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Match: MARCHF3 (membrane associated ring-CH-type finger 3 [Source:HGNC Symbol;Acc:HGNC:28728]) HSP 1 Score: 67.3958 bits (163), Expect = 1.349e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Match: MARCHF2 (membrane associated ring-CH-type finger 2 [Source:HGNC Symbol;Acc:HGNC:28038]) HSP 1 Score: 65.4698 bits (158), Expect = 5.913e-12 Identity = 31/105 (29.52%), Postives = 52/105 (49.52%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C + + L+SPC C G++G +HK+CLEKWL+++ CE+C EF V + WL P ++ ++ +VC + + I W + Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKD---PGPRTEKRTL-----CCDMVCFLFITPLAAISGWLCL 160
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Match: MARCHF2 (membrane associated ring-CH-type finger 2 [Source:HGNC Symbol;Acc:HGNC:28038]) HSP 1 Score: 65.4698 bits (158), Expect = 5.913e-12 Identity = 31/105 (29.52%), Postives = 52/105 (49.52%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C + + L+SPC C G++G +HK+CLEKWL+++ CE+C EF V + WL P ++ ++ +VC + + I W + Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKD---PGPRTEKRTL-----CCDMVCFLFITPLAAISGWLCL 160
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Match: MARCHF3 (membrane associated ring-CH-type finger 3 [Source:HGNC Symbol;Acc:HGNC:28728]) HSP 1 Score: 63.1586 bits (152), Expect = 7.438e-12 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFV 288 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Match: MARCHF2 (membrane associated ring-CH-type finger 2 [Source:HGNC Symbol;Acc:HGNC:28038]) HSP 1 Score: 60.4622 bits (145), Expect = 1.277e-10 Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFV 288 CR+C + + L+SPC C G++G +HK+CLEKWL+++ CE+C EF V Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAV 115
BLAST of RING-CH-type domain-containing protein vs. Ensembl Celegans
Match: marc-3 (MARCH (Membrane-Associated Ring finger (C3HC4)) homolog [Source:UniProtKB/TrEMBL;Acc:Q93227]) HSP 1 Score: 55.8398 bits (133), Expect = 1.018e-8 Identity = 37/123 (30.08%), Postives = 56/123 (45.53%), Query Frame = 1 Query: 169 LISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQ-----NNSTIEESSTLEI 522 LISPC C G++G+ H++CLE WLT CEIC F F + + +F ++ + S+ N I FVLL IL + + +S R+ N +E+ LE+ Sbjct: 34 LISPCKCSGTMGLFHRSCLEHWLTLTSTTNCEICKFAFKIKQKSRNFIDYIRQGGYKKLQSNRNPF--------IDFAFVLL-ILPFAFFGVFMSVEGALYAGRKYHYAFENRDNDENGNLEV 147
BLAST of RING-CH-type domain-containing protein vs. Ensembl Celegans
Match: marc-1 (MARCH (Membrane-Associated Ring finger (C3HC4)) homolog [Source:UniProtKB/TrEMBL;Acc:B2D6L6]) HSP 1 Score: 51.2174 bits (121), Expect = 1.523e-7 Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEF 282 CR+C GD++ PC C G++G +H+ CL KW+ + CEIC E+ Sbjct: 52 CRIC--QMHEGDMVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEY 99
BLAST of RING-CH-type domain-containing protein vs. Ensembl Celegans
Match: marc-2 (MARCH (Membrane-Associated Ring finger (C3HC4)) homolog [Source:UniProtKB/TrEMBL;Acc:Q18997]) HSP 1 Score: 48.1358 bits (113), Expect = 1.532e-6 Identity = 21/55 (38.18%), Postives = 31/55 (56.36%), Query Frame = 1 Query: 109 RLSSLSFKCRVCLDSCDMGD-LISPCFCKGSIGVIHKNCLEKWLTAARIGQCEIC 270 +S+ + CR+C D+ D LI PC C G++ +H CLE+W+ QC IC Sbjct: 17 EVSTKTVICRICFDNDTSSDSLIKPCSCSGTVAYVHNGCLEQWVRTTSNIQCTIC 71
BLAST of RING-CH-type domain-containing protein vs. Ensembl Celegans
Match: marc-6 (MARCH (Membrane-Associated Ring finger (C3HC4)) homolog [Source:UniProtKB/TrEMBL;Acc:Q400N4]) HSP 1 Score: 49.2914 bits (116), Expect = 1.672e-6 Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEF 282 CRVC + G L PC C GSI +H+ CL +WL ++ CE+C ++ Sbjct: 53 CRVC--RGNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKKEVCELCNHKY 100
BLAST of RING-CH-type domain-containing protein vs. Ensembl Fly
Match: CG4080 (gene:FBgn0035983 transcript:FBtr0309506) HSP 1 Score: 65.0846 bits (157), Expect = 1.186e-11 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 Query: 133 CRVCL-DSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLS 324 CR+C +S L++PC+C GS+ +H+ CL++WLTA+ CE+C F F + T F+ W S Sbjct: 43 CRICHCESDPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIKPFNEWRS 107
BLAST of RING-CH-type domain-containing protein vs. Ensembl Fly
Match: CG4080 (gene:FBgn0035983 transcript:FBtr0076494) HSP 1 Score: 65.0846 bits (157), Expect = 1.186e-11 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 Query: 133 CRVCL-DSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLS 324 CR+C +S L++PC+C GS+ +H+ CL++WLTA+ CE+C F F + T F+ W S Sbjct: 43 CRICHCESDPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIKPFNEWRS 107
BLAST of RING-CH-type domain-containing protein vs. Ensembl Fly
Match: CG13442 (gene:FBgn0034546 transcript:FBtr0086240) HSP 1 Score: 62.3882 bits (150), Expect = 8.808e-11 Identity = 26/73 (35.62%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 64 VNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEF 282 +N++ +S+++ P S S CR+C ++ + L+SPC CKGS+ +H +CLE W++ +R CE+C F++ Sbjct: 149 LNYESASNESMP-----SVGSLVCRICHNADNPEQLVSPCLCKGSLTYVHVHCLECWISTSRCTTCELCQFQY 216
BLAST of RING-CH-type domain-containing protein vs. Ensembl Fly
Match: CG17717 (gene:FBgn0029877 transcript:FBtr0070944) HSP 1 Score: 53.5286 bits (127), Expect = 4.765e-8 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 133 CRVCL-DSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWL 321 CR+C + DM + PC CKGS+G IH CL++W+ R +CEIC F ++ AS + + Sbjct: 91 CRICRWNRNDMEIIKCPCNCKGSVGYIHLKCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMI 154
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Match: zgc:158785 (zgc:158785 [Source:ZFIN;Acc:ZDB-GENE-070112-1712]) HSP 1 Score: 75.0998 bits (183), Expect = 1.173e-15 Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C + GDL+SPC C GS+ ++H+ CLE+WLTA+ CE+C F++ + F+ WLS + S QR + ++C + + + W + Sbjct: 50 CRICHEDSAAGDLLSPCECAGSLAMVHRVCLEQWLTASGTSSCELCHFQYALERLPKPFTEWLS--------APSMQQQRRTLCGDVICFLFITPLASLSGWLCV 146
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Match: march2 (membrane-associated ring finger (C3HC4) 2 [Source:NCBI gene;Acc:555611]) HSP 1 Score: 65.4698 bits (158), Expect = 4.774e-12 Identity = 32/108 (29.63%), Postives = 53/108 (49.07%), Query Frame = 1 Query: 133 CRVC---LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C D C+ L+SPC C G++G +HK+CLEKWL+++ CE+C EF + + WL P ++ ++ +VC + + I W + Sbjct: 64 CRICHEGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFTIERRPRPLTEWLRD---PGPRNEKRTL-----FCDMVCFLFITPLAAISGWLCL 163
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Match: CR392032.1 (membrane-associated ring finger (C3HC4) 11 [Source:NCBI gene;Acc:798174]) HSP 1 Score: 58.5362 bits (140), Expect = 1.801e-9 Identity = 35/126 (27.78%), Postives = 62/126 (49.21%), Query Frame = 1 Query: 76 QSSSQTEPIGARLSSLS----FKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEF-FVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIW 438 QS+ +TE +G+ S+ S CR+C + G+L+SPC C GS+ H+ CL KW++ CE+C + F + + S +W T ++++ V++ + LLA + +W Sbjct: 84 QSAVKTETVGSSCSNESCIPTPGCRICFQGAEQGELLSPCRCAGSVRHAHQQCLLKWISEKGSWSCELCNYRFNILPIHIKSPQQWQRVTM--------TLVEKVQVIAVFLGGLFLLASVSWLLW 201
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Match: march11 (membrane-associated ring finger (C3HC4) 11 [Source:ZFIN;Acc:ZDB-GENE-070912-276]) HSP 1 Score: 57.7658 bits (138), Expect = 2.783e-9 Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 1 Query: 76 QSSSQTEPIGARLSSLS----FKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFV 288 QS+ +TE +G+ S+ S CR+C + G+L+SPC C GS+ H+ CL KW++ CE+C + F + Sbjct: 84 QSAVKTETVGSSCSNESCVPTPGCRICFQGAEQGELLSPCRCAGSVRHAHQQCLLKWISEKGSWSCELCNYRFNI 158
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Match: march8 (membrane-associated ring finger (C3HC4) 8 [Source:ZFIN;Acc:ZDB-GENE-080204-8]) HSP 1 Score: 54.6842 bits (130), Expect = 6.852e-9 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVC-LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + D LI+PC C GS+ +H+ CL++W+ ++ CE+C ++F + T +W Sbjct: 53 CRICHCEGDDESPLITPCHCTGSLRFVHQACLQQWIKSSDTRCCELCKYDFIMETKLKPLRKW 115
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Match: march3 (membrane associated ring-CH-type finger 3 [Source:NCBI gene;Acc:493225]) HSP 1 Score: 67.0106 bits (162), Expect = 1.664e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 69 CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 163
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Match: march3 (membrane associated ring-CH-type finger 3 [Source:NCBI gene;Acc:493225]) HSP 1 Score: 67.0106 bits (162), Expect = 1.700e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 70 CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 164
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Match: marchf2 (membrane associated ring-CH-type finger 2 [Source:NCBI gene;Acc:549760]) HSP 1 Score: 65.0846 bits (157), Expect = 9.184e-12 Identity = 31/103 (30.10%), Postives = 50/103 (48.54%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + + L+SPC C G++G +HK CLEKWL+++ CE+C EF V + WL P ++ ++ +VC + + I W Sbjct: 76 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVTEWLKD---PGPRNEKRTL-----FCDMVCFLFITPLAAISGWL 170
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Match: faf1 (Fas (TNFRSF6) associated factor 1 [Source:Xenbase;Acc:XB-GENE-940895]) HSP 1 Score: 58.151 bits (139), Expect = 2.350e-9 Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVC-LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + D LI+PC C GS+ +H+ CL++W+ ++ CE+C FEF + T +W Sbjct: 57 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKPLRKW 119
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Match: faf1 (Fas (TNFRSF6) associated factor 1 [Source:Xenbase;Acc:XB-GENE-940895]) HSP 1 Score: 58.5362 bits (140), Expect = 2.693e-9 Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVCL-DSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + D LI+PC C GS+ +H+ CL++W+ ++ CE+C FEF + T +W Sbjct: 117 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKPLRKW 179
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Match: March2 (membrane-associated ring finger (C3HC4) 2 [Source:MGI Symbol;Acc:MGI:1925915]) HSP 1 Score: 67.3958 bits (163), Expect = 2.828e-13 Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLS 324 CR+C + + +L+SPC C G++G +HK+CLEKWL+++ CE+C EF V + WL Sbjct: 3 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLK 66
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Match: March3 (membrane-associated ring finger (C3HC4) 3 [Source:MGI Symbol;Acc:MGI:2443667]) HSP 1 Score: 67.3958 bits (163), Expect = 5.446e-13 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Match: March3 (membrane-associated ring finger (C3HC4) 3 [Source:MGI Symbol;Acc:MGI:2443667]) HSP 1 Score: 67.3958 bits (163), Expect = 8.904e-13 Identity = 31/103 (30.10%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL P + ++ +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN---PGPQHEKRTL-----FGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Match: March2 (membrane-associated ring finger (C3HC4) 2 [Source:MGI Symbol;Acc:MGI:1925915]) HSP 1 Score: 67.781 bits (164), Expect = 9.121e-13 Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF-LILSNNNVTMETR 480 CR+C + + +L+SPC C G++G +HK+CLEKWL+++ CE+C EF V + WL P ++ ++ +VC + + I W L + +++ + +R Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKD---PGPRTEKRTL-----CCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSR 172
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Match: March2 (membrane-associated ring finger (C3HC4) 2 [Source:MGI Symbol;Acc:MGI:1925915]) HSP 1 Score: 67.781 bits (164), Expect = 9.121e-13 Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF-LILSNNNVTMETR 480 CR+C + + +L+SPC C G++G +HK+CLEKWL+++ CE+C EF V + WL P ++ ++ +VC + + I W L + +++ + +R Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLKD---PGPRTEKRTL-----CCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSR 172
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q32L65|MARH2_BOVIN (E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.796e-12 Identity = 31/105 (29.52%), Postives = 54/105 (51.43%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C + + L+SPC C G++G +HK+CLE+WL+++ CE+C EF V + S + WL P ++ ++ +VC + + I W + Sbjct: 64 CRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEFAVEKRSRSLTEWLKD---PGPRTEKRTL-----CCDVVCFLFITPLAAISGWLCL 160
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8BRX9|MARH3_MOUSE (E3 ubiquitin-protein ligase MARCHF3 OS=Mus musculus OX=10090 GN=Marchf3 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q86UD3|MARH3_HUMAN (E3 ubiquitin-protein ligase MARCHF3 OS=Homo sapiens OX=9606 GN=MARCHF3 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.476e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Match: sp|A0JN69|MARH3_BOVIN (E3 ubiquitin-protein ligase MARCHF3 OS=Bos taurus OX=9913 GN=MARCHF3 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.476e-12 Identity = 32/103 (31.07%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL N +R + +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWL-------RNPGPQHEKRT-LFGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5XIE5|MARH3_RAT (E3 ubiquitin-protein ligase MARCHF3 OS=Rattus norvegicus OX=10116 GN=Marchf3 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.800e-12 Identity = 31/103 (30.10%), Postives = 48/103 (46.60%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + DL+SPC C G++G IH++CLE WL+++ CE+C F F V WL P + ++ +VC + + I W Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRN---PGPQHEKRTL-----FGDMVCFLFITPLATISGWL 165
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Match: A0A4Z2DMP7 (E3 ubiquitin-protein ligase MARCH2 OS=Schistosoma japonicum OX=6182 GN=EWB00_010900 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.224e-21 Identity = 65/204 (31.86%), Postives = 106/204 (51.96%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPAL 744 CR+CL S D DLISPC C G+IG++H+ CLEKWL +R+ CEICG++F + + FS+WL S +R + + ++CL ++L +L +C W I SN + S+T +F L L +LL++V +W + ++R++++SWK ++ ++Q + LS I + F P L Sbjct: 50 CRICLGSTDFEDLISPCHCTGTIGIVHQRCLEKWLNLSRLRTCEICGYKFEILKSYPRFSKWLW-----MGGKGDGSHRRRHLWTDLICLIIMLPLLTLCAWLAISSNQEEDI-----------SNTKRFPWQSFFLGSLCSLLLLVFNIWLMFSLRYHHQSWKLWR--------TEQCYIVLSESIKKKKVMNTKFSPNNPNL 229
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Match: A0A183QQI8 (RING-CH-type domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.190e-15 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1 Query: 109 RLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVL 384 R++ CR+CL S D +LISPC+C G+IG++H+ CLEKWL +R CEICGF F VS + F + F FS + I+ I + Sbjct: 17 RINGDVIYCRICLGSSDFEELISPCYCAGTIGIVHQRCLEKWLNLSRSRACEICGFTFEVSKHYPHFCK------FSFSMCPLDRIKYISIF 102
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Match: A0A183MHG1 (RING-CH-type domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS15486 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1 Query: 79 SSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSR--WLSGTFFPFS 345 S + R+ + CR+CL S D +LISPC+C G+IG++H+ CLEKWL +R CEICGF F V + F + +LS F FS Sbjct: 24 SVCHKHDVFLRIKNDVIYCRICLGSSDFEELISPCYCAGTIGIVHQRCLEKWLNLSRSKTCEICGFTFEVLKHYPHFCKVCFLSNYFDEFS 114
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Match: A0A553NCR9 (RING-CH-type domain-containing protein OS=Tigriopus californicus OX=6832 GN=TCAL_00377 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.099e-14 Identity = 46/133 (34.59%), Postives = 67/133 (50.38%), Query Frame = 1 Query: 64 VNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNN 462 VN Q S+ + I CR+C + + LISPC C GS+G IH+ CLEKWL+ CE+CG +F V N S +RWL + PFS++ N ++ +C F+L + I + +L N Sbjct: 8 VNISQGSTVSHVI----------CRICHEGDRLIPLISPCACSGSVGTIHQVCLEKWLSTVNKDDCELCGRKFLVHKNPKSITRWLLRS--PFSDAHRN------IIGDTICFFILTPMSLISAYLCVLGAVN 122
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Match: A0A4S2LI31 (RING-CH-type domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007031 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.297e-14 Identity = 64/194 (32.99%), Postives = 105/194 (54.12%), Query Frame = 1 Query: 112 LSSLSFKCRVCLDSCDM-GDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNS---------DSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKR---YQMRCSRID 654 LS F+CR+CLD ++ G L+SPC CKG++G++H+NCL++WL + +CE+CG+E+ + T S R L P S + SN+ +R +L+ I+CL +L I ++F I+ ME N ++ L + L LL+++ T W ILAIRH+ +++R YQ + R++ Sbjct: 295 LSFNQFRCRICLDEGELEGPLMSPCRCKGTVGLVHRNCLQRWLYESGKVKCELCGYEYIM---TPSRRRSLPTFTRPRSYTRLDLFCAWIRSNTTRRH-LLADIICLVLLTPSTYIGVYFCIVGAMGFAME----NPFAWQAIGLWL---------LAILLIILLTSWMILAIRHHLSTFQRHMYYQRQRERLE 471
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000055541.1 (E3 ubiquitin-protein ligase MARCH3-like [Source:NCBI gene;Acc:103046723]) HSP 1 Score: 78.1814 bits (191), Expect = 1.059e-16 Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 CR+C + GDL+SPC C G++ ++H+ CLE WLTA+ CE+C FEF + F+ WL+ + S+QR + I+C + + + W + Sbjct: 64 CRICHEGLSAGDLLSPCECAGTLAMVHRVCLEHWLTASGTSHCELCHFEFALERLPKPFTEWLA----------TPSMQRRTLCGDIICFLFITPLASLSGWLCV 158
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000036351.1 (E3 ubiquitin-protein ligase MARCH3-like [Source:NCBI gene;Acc:103046723]) HSP 1 Score: 77.0258 bits (188), Expect = 1.563e-16 Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 1 Query: 85 SQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 S T+ + L+ CR+C + GDL+SPC C G++ ++H+ CLE WLTA+ CE+C FEF + F+ WL+ + S+QR + I+C + + + W + Sbjct: 27 SLTQSVSLSLNGEEPFCRICHEGLSAGDLLSPCECAGTLAMVHRVCLEHWLTASGTSHCELCHFEFALERLPKPFTEWLA----------TPSMQRRTLCGDIICFLFITPLASLSGWLCV 137
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Match: MARCHF3 (membrane associated ring-CH-type finger 3 [Source:NCBI gene;Acc:103035346]) HSP 1 Score: 67.3958 bits (163), Expect = 9.069e-13 Identity = 32/103 (31.07%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C D +L+SPC C G++G IH++CLE WL+A+ CE+C ++F V WL N + +R + +VC ++ + I W Sbjct: 86 CRICHDGGGQEELLSPCECAGTLGTIHRSCLEHWLSASSTSFCELCHYQFSVQRKARPLLEWL-------RNPGLHQEKRT-LFGDMVCFLLITPLATISGWL 180
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Match: march2 (membrane associated ring-CH-type finger 2 [Source:NCBI gene;Acc:103021975]) HSP 1 Score: 65.4698 bits (158), Expect = 3.761e-12 Identity = 30/103 (29.13%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 CR+C + + L+SPC C G++G +HK+CLEKWL+++ CE+C EF + + WL P ++ ++ +VC + + I W Sbjct: 64 CRICHEGGNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFTIERRPRPLTEWLRD---PGPRNEKRTL-----FCDMVCFLFITPLAAISGWL 158
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Match: march8 (membrane-associated ring finger (C3HC4) 8 [Source:ZFIN;Acc:ZDB-GENE-080204-8]) HSP 1 Score: 56.225 bits (134), Expect = 9.320e-9 Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVC-LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + D LI+PC C GS+ +H+ CL++W+ ++ CE+C FEF + T +W Sbjct: 187 CRICHCEGDDESPLITPCHCTGSLRFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKPLRKW 249
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Match: MARCHF3 (membrane associated ring-CH-type finger 3 [Source:HGNC Symbol;Acc:HGNC:28728]) HSP 1 Score: 77.0258 bits (188), Expect = 2.552e-17 Identity = 47/185 (25.41%), Postives = 85/185 (45.95%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSA 687 CR+C + +L+SPC C G++G +H++CLE WL A+ CE+C F+F V ++WL + S +R +LS +C + + GI W L L +E+ N S +E + + + L+ + W +++R++ R ++ ++ R+ L L A Sbjct: 11 CRICHEGSAQEELLSPCECTGTLGWVHRSCLEHWLAASNTSYCELCHFQFLVERKPQPLTQWL--------RNPSPKQERRTLLSDTLCFLFITPLAGISGW-LCLRGAADHLES-GNRSQLEAAGLIGL----------TVALLTIYLFWTAVSVRYHIRLYQEWRKTHHRVKLLTPRPTGLPA 175
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Match: MARCHF3 (membrane associated ring-CH-type finger 3 [Source:HGNC Symbol;Acc:HGNC:28728]) HSP 1 Score: 77.0258 bits (188), Expect = 2.896e-17 Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 1 Query: 100 IGARLSSL-SFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF 441 + R++S+ S CR+C ++ +L+SPC C G++G +H+ CLE+WL A+ CE+C F+F V FS+WL S +R +LS +C + + G+ W Sbjct: 20 VAERVASVESPFCRICHEAGSAEELLSPCECMGTLGWVHRACLERWLAASNTSYCELCHFQFLVERTPQPFSQWL--------RRPSPKQERRTLLSDTLCFLFISPLAGVSGWL 126
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Match: march8 (membrane-associated ring finger (C3HC4) 8 [Source:ZFIN;Acc:ZDB-GENE-080204-8]) HSP 1 Score: 49.6766 bits (117), Expect = 1.866e-7 Identity = 17/54 (31.48%), Postives = 31/54 (57.41%), Query Frame = 1 Query: 157 DMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 + G L +PC C GS+ +H+ CL++W+ ++ CE+C + F + T +W Sbjct: 29 EEGPLTAPCQCTGSLQFVHQACLQQWIKSSGASCCELCNYSFVMETTLKPLRKW 82
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Match: MARCHF4 (membrane associated ring-CH-type finger 4 [Source:HGNC Symbol;Acc:HGNC:29269]) HSP 1 Score: 46.595 bits (109), Expect = 1.665e-6 Identity = 24/88 (27.27%), Postives = 45/88 (51.14%), Query Frame = 1 Query: 163 GDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFV-STNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAIL 423 G+L++PC C GS+ H+ CL W++ CE+C ++F V NT ++W + P + ++ + CLF+L +++ Sbjct: 4 GELLNPCRCNGSVRWTHQPCLLTWISERGSWSCELCYYKFRVRPVNTKHPTQWQGVSLSPIERVQAAAV-------SLGCLFLLASLV 84
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002279.1 (pep scaffold:Pmarinus_7.0:GL492175:3127:4977:-1 gene:ENSPMAG00000002079.1 transcript:ENSPMAT00000002279.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 44.2838 bits (103), Expect = 2.556e-6 Identity = 21/51 (41.18%), Postives = 28/51 (54.90%), Query Frame = 1 Query: 133 CRVCL-DSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEF 282 CRVC + L PC C GSI IH++CL +WL ++ CE+C F Sbjct: 5 CRVCRSEGTAEKPLYHPCVCTGSIKYIHQDCLLQWLKHSKKEYCELCKHRF 55
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Match: EDO37249 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGD2]) HSP 1 Score: 70.0922 bits (170), Expect = 5.545e-15 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSI 366 CR+C DS D+ISPC C G++G +H CLE+WL+A+ +CEIC +E+ + +F +WL P S ++ I Sbjct: 1 CRICRDSTAGCDVISPCHCSGTLGRVHVRCLEEWLSASNKNECEICKYEYHLQRTPKTFRQWLKN---PRSRTERRYI 75
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Match: EDO37870 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEJ1]) HSP 1 Score: 58.5362 bits (140), Expect = 1.389e-10 Identity = 22/63 (34.92%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVCLDSCDMGD-LISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + LISPC C GS+ +H+ CL++W+ ++ +CE+C +EF + F +W Sbjct: 10 CRICHCEAEPDQPLISPCHCSGSLQYVHQTCLQRWIKSSDTKKCELCNYEFIMEAKMKPFRKW 72
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Match: EDO31642 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SXB2]) HSP 1 Score: 60.077 bits (144), Expect = 1.420e-10 Identity = 30/102 (29.41%), Postives = 51/102 (50.00%), Query Frame = 1 Query: 133 CRVCLDSCD----MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSD-----SNSIQRIPVLSKIVCLFVL 411 CR+C ++ +LI PC C G++G H++C+E+WLT +C IC F F T ++W T+ P + D + ++ VL ++ LF + Sbjct: 68 CRICQNTVQRMIGKEELIKPCLCNGTLGYAHRSCMEQWLTLTEKKKCTICEFTFKTKTVLKPITQW---TWLPMTTEDIIMLVGTILSQLTVLLQLGALFYV 166
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Match: EDO41497 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4C7]) HSP 1 Score: 50.447 bits (119), Expect = 2.604e-7 Identity = 40/157 (25.48%), Postives = 63/157 (40.13%), Query Frame = 1 Query: 43 LKMSNSIVNFQQSSSQTE-----PIGARLSSLSF--------KCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSI---QRIPVLSKIVCLFVLLAILGICIWFLILSNNNV 465 L M + N S S + PI L F +CR+C D LISPC C GS +H++CL W +R +CE+C + V T W D S+ ++ + V LF + I+G ++ + +++V Sbjct: 45 LNMDGDVSNASNSKSSPKLEFELPIEDSKQELGFFAEFEYENECRICHTEGDEV-LISPCKCSGSTKWVHESCLVLWFQVSRTSKCELCAEKISVKKYTKPVREW--------RRPDVKSVGPCSKVDLWYLFVTLFSVSTIIGFVVFQACVKSDDV 192
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Match: EDO33161 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSY5]) HSP 1 Score: 49.2914 bits (116), Expect = 7.980e-7 Identity = 22/69 (31.88%), Postives = 32/69 (46.38%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFP 339 CR+C + LISPC C G++ +H +CL WL +CE+C + V T +W P Sbjct: 196 CRICHCGGESEVLISPCLCMGTVRFVHHSCLMDWLQRCVKTKCELCLYPVAVRRKTKPLKKWRPPDEKP 264
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000017494.2 (E3 ubiquitin-protein ligase MARCH2 [Source:NCBI gene;Acc:101156120]) HSP 1 Score: 68.9366 bits (167), Expect = 2.209e-13 Identity = 33/117 (28.21%), Postives = 61/117 (52.14%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWF-LILSNNNVTMETR 480 CR+C + L+SPC C G++G +HK+CLEKWL+++ CE+C EF + ++WL P S+ ++ L + C ++ + I W L + +++ +++R Sbjct: 67 CRICHEGAGGETLLSPCDCTGTLGKVHKSCLEKWLSSSNTSYCELCHTEFTIERRPQPLTQWLKD---PGPRSEKRTL-----LCDMACFLLITPLAAISGWLCLRGAQDHLQLKSR 175
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Match: march2 (E3 ubiquitin-protein ligase MARCH2 [Source:NCBI gene;Acc:101160153]) HSP 1 Score: 64.3142 bits (155), Expect = 1.028e-11 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWL 321 CR+C + DL+SPC C G+ G +HK+CLEKWL+++ CE+C EF + + WL Sbjct: 66 CRICHEGGSSEDLLSPCDCTGTQGAVHKSCLEKWLSSSNTSYCELCHTEFCIERQQRPLTEWL 128
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Match: march2 (E3 ubiquitin-protein ligase MARCH2 [Source:NCBI gene;Acc:101160153]) HSP 1 Score: 63.929 bits (154), Expect = 1.787e-11 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 133 CRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWL 321 CR+C + DL+SPC C G+ G +HK+CLEKWL+++ CE+C EF + + WL Sbjct: 116 CRICHEGGSSEDLLSPCDCTGTQGAVHKSCLEKWLSSSNTSYCELCHTEFCIERQQRPLTEWL 178
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Match: march8 (membrane associated ring-CH-type finger 8 [Source:NCBI gene;Acc:101161433]) HSP 1 Score: 55.4546 bits (132), Expect = 1.232e-8 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVC-LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + + LI+PC C GS+ +H+ CL++W+ ++ CE+C +EF + T +W Sbjct: 75 CRICHCEGDEESPLITPCHCTGSLRFVHQGCLQQWIKSSDTRCCELCKYEFIMETKFKPLRKW 137
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Match: march8 (membrane associated ring-CH-type finger 8 [Source:NCBI gene;Acc:101161433]) HSP 1 Score: 55.0694 bits (131), Expect = 1.315e-8 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 133 CRVC-LDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRW 318 CR+C + + LI+PC C GS+ +H+ CL++W+ ++ CE+C +EF + T +W Sbjct: 51 CRICHCEGDEESPLITPCHCTGSLRFVHQGCLQQWIKSSDTRCCELCKYEFIMETKFKPLRKW 113
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Match: SMESG000044972.1 (SMESG000044972.1) HSP 1 Score: 473.011 bits (1216), Expect = 3.935e-171 Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 1 Query: 49 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 798 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLL ILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALLVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV Sbjct: 1 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLTILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALLVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 250
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031839.1 (SMESG000031839.1) HSP 1 Score: 470.315 bits (1209), Expect = 5.652e-170 Identity = 246/250 (98.40%), Postives = 247/250 (98.80%), Query Frame = 1 Query: 49 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 798 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVST TASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLL ILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVAL VVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDS+DFTVNKPQSTV Sbjct: 1 MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTKTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLTILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALFVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSIDFTVNKPQSTV 250
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Match: SMESG000044972.1 (SMESG000044972.1) HSP 1 Score: 400.208 bits (1027), Expect = 7.297e-143 Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 1 Query: 160 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 798 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLL ILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALLVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV Sbjct: 1 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLTILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALLVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 213
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Match: SMESG000031839.1 (SMESG000031839.1) HSP 1 Score: 396.741 bits (1018), Expect = 1.519e-141 Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 Query: 160 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIXXXXXXXXXXXXXXXXXWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSLDFTVNKPQSTV 798 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVST TASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLL ILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVAL VVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDS+DFTVNKPQSTV Sbjct: 1 MGDLISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTKTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLTILGICIWFLILSNNNVTMETRQNNSTIEESSTLEIHSIAFVLTFLVALFVVVSTVWAILAIRHNYRSWKRYQMRCSRIDLSQQETVRLSADISDTQTRYQSFGMRTPALPSHRDSIDFTVNKPQSTV 213
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003896.1 (SMESG000003896.1) HSP 1 Score: 67.781 bits (164), Expect = 6.891e-13 Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = 1 Query: 82 SSQTEPIGARLSSLSFKCRVCLDSCDMGD-LISPCFCKGSIGVIHKNCLEKWLTAARIGQCEICGFEFFVSTNTASFSRWLSGTFFPFSNSDSNSIQRIPVLSKIVCLFVLLAILGICIWFLI 447 +S+T R+S L KCR+CLD G+ L+SPC CKG++G++H CLE+W+ + QCEIC + + A WL + +QR + +C L+ I I+F I Sbjct: 113 TSKTTENPVRISVL--KCRICLDLEKNGEKLMSPCRCKGTVGLMHSTCLEEWIRISEKEQCEICKCNYDMRKKRADMHMWLRHIY----------MQR-SFIGDAMCFIFLIPSTTIAIFFCI 222 The following BLAST results are available for this feature:
BLAST of RING-CH-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of RING-CH-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of RING-CH-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of RING-CH-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RING-CH-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015368 ID=SMED30015368|Name=RING-CH-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=827bpback to top protein sequence of SMED30015368-orf-1 >SMED30015368-orf-1 ID=SMED30015368-orf-1|Name=SMED30015368-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=251bp MSNSIVNFQQSSSQTEPIGARLSSLSFKCRVCLDSCDMGDLISPCFCKGSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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