SMED30015361

Overview
NameSMED30015361
Smed IDSMED30015361
Length (bp)860
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30015361

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30015361SMESG000032256.1 Contig54796newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30015361SMESG000032256.1 Contig54796uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
copulatory apparatusSMED30015361SMESG000032256.1 PL04010B2H02ncbi_smed_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
copulatory apparatusSMED30015361SMESG000032256.1 Contig3533GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30015361 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.014050:5596..8847 +4132
v31.018589:10342..13459 +3718
Homology
[Close]
BLAST of SMED30015361 vs. Planmine SMEST
Match: SMESG000032256.1 (SMESG000032256.1)

HSP 1 Score: 393.275 bits (1009), Expect = 2.789e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 3 
Query:  222 MLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS 797
            MLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS
Sbjct:    1 MLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS 192
[Close]
BLAST of SMED30015361 vs. Planmine SMEST
Match: SMESG000032256.1 (SMESG000032256.1)

HSP 1 Score: 380.563 bits (976), Expect = 2.119e-135
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 3 
Query:  240 MTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS 797
            MTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS
Sbjct:    1 MTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRFVLFGRMRVVNVKTKS 186
[Close]
BLAST of SMED30015361 vs. Planmine SMEST
Match: SMESG000032167.1 (SMESG000032167.1)

HSP 1 Score: 142.124 bits (357), Expect = 9.908e-38
Identity = 79/185 (42.70%), Postives = 108/185 (58.38%), Query Frame = 3 
Query:  135 EIKVYDKTSKSFWILYKHKTLKSI--EYTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFT 683
            EI V++ TS SF I +K         +Y +I+L P ++  KTK + +  DNL PC +YC +I   +      +SK ICQ   +T FD V L  ++S +LP +L W Y NT NCS I F +EY+L    K +YS+ TN T V L  I+Y   Y AKV+PE D  +G+FS+ELEI I K P+ P  T
Sbjct:  544 EIVVFNVTSTSFQIRWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEVVLKPIESTQLPAVLYWTYQNTLNCSHIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFAKVKPEFDGLFGNFSEELEIVINKMPETPSIT 728

HSP 2 Score: 139.043 bits (349), Expect = 1.126e-36
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 3 
Query:  210 YTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKK 659
            Y ++ML P   T +TK + +  +NL PCRKYC  IR  + +GI   S  IC+   LT FD V L  +Q    P +L W Y NTSNCS I F VEY+  K  K +YS+ TN+T+  L  IE++K Y  KVRP++++ +G+FSK LE+FIKK
Sbjct:  753 YEIVMLFPKTSTYRTKQTNFTLENLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDNSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSITTNKTESELEKIEFNKKYAVKVRPKYEEMFGNFSKILELFIKK 902

HSP 3 Score: 128.642 bits (322), Expect = 4.283e-33
Identity = 71/169 (42.01%), Postives = 95/169 (56.21%), Query Frame = 3 
Query:  207 EYTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQ-------------YLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIP 674
            EY +I+  P ++  KTK + +  DNL PC +YC +I   +  G   +SK I Q             Y  L  FD V L  ++S +LP +L W Y NT NCS+I F +EY+L    K +YS+ TN T V L  I+Y   Y AKV+PE D  +G+FS+ELEI I K PD P
Sbjct:   10 EYEIILRHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFGESKKSKKIYQKTNISIKTIQNIIYDNLVLFDEVVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFAKVKPEFDGLFGNFSEELEIVINKMPDPP 178

HSP 4 Score: 119.398 bits (298), Expect = 5.239e-30
Identity = 66/155 (42.58%), Postives = 96/155 (61.94%), Query Frame = 3 
Query:  210 YTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIP 674
            Y ++++   ++T +T  + +K DNL  CR+YC  I+  +KLG    SK ICQ  K+ +FD VTLN V S+KLP  L+ +Y NT NCS+I F V+Y+    S PVY + TN+T   +  +EY+  Y  K R E++  + ++SKELEI I K P  P
Sbjct:  207 YEIVVIHSEKITYQTYKTKFKLDNLLTCRQYCFAIQVFNKLGKSELSKEICQNTKIASFDEVTLNPVNSQKLPVTLEVSYLNTLNCSNILFIVKYYSEIDSHPVYFI-TNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITP 360

HSP 5 Score: 109.383 bits (272), Expect = 1.422e-26
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  219 IMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPI 677
            +++ PI    +TK +   F NL PCR YC ++R  +       S+  CQ  K+  FD V L+ V     P IL+W Y NT  CSDI F V Y+       +Y+  TN+ ++ L  IE+D  Y AKV+PE+D  +G+FSKE+ I +   P  PI
Sbjct:  391 VLVIPIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIAYFDEVILSPVVYNGFPVILEWTYQNTLGCSDIFFNVVYYPTYRENIIYTNRTNRKELQLDKIEHDLIYFAKVKPEYDGMFGNFSKEMLILVTSKPVKPI 543
[Close]
BLAST of SMED30015361 vs. Planmine SMEST
Match: SMESG000032101.1 (SMESG000032101.1)

HSP 1 Score: 139.428 bits (350), Expect = 3.547e-37
Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = 3 
Query:  135 EIKVYDKTSKSFWILYKHKTLKSI--EYTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFT 683
            EI V++ TS SF IL+K         +Y +I+L P ++  KTK + +  DNL PC +YC +I   +      +SK ICQ   +T FD   L  ++S +LP +L W Y NT NCS+I F +EY+L    K +YS+ TN T V L  I+Y   Y A+V+P  D  +G+FS+ELEI I K P+ P  T
Sbjct:  194 EIVVFNVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEAVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFARVKPIFDGLFGNFSEELEIVINKMPETPSIT 378

HSP 2 Score: 119.013 bits (297), Expect = 6.456e-30
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 3 
Query:  210 YTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDK 614
            Y ++ML P   T +TK + +   NL PCRKYC  IR  + +GI   S  IC+   LT FD V L  +Q    P +L W Y NTSNCS I F VEY+  K  K +YS+ TN+T+  L  IE++K Y  KVRP++++
Sbjct:  403 YEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDSSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSIITNKTESELEKIEFNKKYAVKVRPKYEE 537

HSP 3 Score: 43.8986 bits (102), Expect = 1.883e-7
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  510 SKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIP 674
            S PVY + TN+T   +  +EY+  Y  K R E++  + ++SKELEI I K P  P
Sbjct:   51 SHPVYFI-TNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITP 104

HSP 4 Score: 29.6462 bits (65), Expect = 1.883e-7
Identity = 14/33 (42.42%), Postives = 21/33 (63.64%), Query Frame = 2 
Query:  392 SDIEFCSVQKATIYFTMELSEYFKLF*YHIYRR 490
            SD+E C   KA+ +    LSEYF+LF Y ++ +
Sbjct:   12 SDLEPCQFTKASSHLGGVLSEYFELFKYSLHSK 44
[Close]
BLAST of SMED30015361 vs. Planmine SMEST
Match: SMESG000032101.1 (SMESG000032101.1)

HSP 1 Score: 139.428 bits (350), Expect = 4.338e-37
Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = 3 
Query:  135 EIKVYDKTSKSFWILYKHKTLKSI--EYTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIPIFT 683
            EI V++ TS SF IL+K         +Y +I+L P ++  KTK + +  DNL PC +YC +I   +      +SK ICQ   +T FD   L  ++S +LP +L W Y NT NCS+I F +EY+L    K +YS+ TN T V L  I+Y   Y A+V+P  D  +G+FS+ELEI I K P+ P  T
Sbjct:  247 EIVVFNVTSTSFQILWKMPPEVEFPNKYEIILLHPNKIIYKTKQTHFTLDNLLPCTEYCFQISTFNFFSESTKSKKICQNTNITLFDEAVLKPIESTQLPAVLYWTYQNTLNCSNIIFYIEYYLENNKKNIYSISTNDTMVKLEQIKYKTKYFARVKPIFDGLFGNFSEELEIVINKMPETPSIT 431

HSP 2 Score: 119.013 bits (297), Expect = 6.826e-30
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 3 
Query:  210 YTLIMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDK 614
            Y ++ML P   T +TK + +   NL PCRKYC  IR  + +GI   S  IC+   LT FD V L  +Q    P +L W Y NTSNCS I F VEY+  K  K +YS+ TN+T+  L  IE++K Y  KVRP++++
Sbjct:  456 YEIVMLFPKTSTYRTKQTNFTLQNLLPCRKYCFGIRSFNLVGISNLSMEICEKTNLTAFDEVVLKPLQDSSFPVVLSWTYINTSNCSGILFIVEYYSDKEDKDIYSIITNKTESELEKIEFNKKYAVKVRPKYEE 590

HSP 3 Score: 83.5741 bits (205), Expect = 7.895e-18
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3 
Query:  219 IMLSPIQMTIKTKSSFYKFDNLKPCRKYCLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYPNTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVV 554
            +++ PI    +TK +   F NL PCR YC ++R  +       S+  CQ  K+ +F  VTL+S+Q+  LPFILQW Y NT NCS I+F V Y+  K  + ++S+ T   K +
Sbjct:  135 VLVIPIGAIYRTKETDLTFVNLLPCRTYCFQVRIFNFWTSSELSEKKCQSTKIGSFGQVTLSSIQTMTLPFILQWYYENTFNCSGISFLVHYYSEKEIENIFSVTTKPVKPI 246

HSP 4 Score: 43.8986 bits (102), Expect = 1.690e-7
Identity = 23/55 (41.82%), Postives = 33/55 (60.00%), Query Frame = 3 
Query:  510 SKPVYSLETNQTKVVLGNIEYDKSYLAKVRPEHDKDYGSFSKELEIFIKKTPDIP 674
            S PVY + TN+T   +  +EY+  Y  K R E++  + ++SKELEI I K P  P
Sbjct:   51 SHPVYFI-TNETATEIQEMEYNIKYYVKARCEYEGMFSNYSKELEILITKVPITP 104

HSP 5 Score: 29.6462 bits (65), Expect = 1.690e-7
Identity = 14/33 (42.42%), Postives = 21/33 (63.64%), Query Frame = 2 
Query:  392 SDIEFCSVQKATIYFTMELSEYFKLF*YHIYRR 490
            SD+E C   KA+ +    LSEYF+LF Y ++ +
Sbjct:   12 SDLEPCQFTKASSHLGGVLSEYFELFKYSLHSK 44
The following BLAST results are available for this feature:
BLAST of SMED30015361 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30015361 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000032256.12.789e-140100.00SMESG000032256.1[more]
SMESG000032256.12.119e-135100.00SMESG000032256.1[more]
SMESG000032167.19.908e-3842.70SMESG000032167.1[more]
SMESG000032101.13.547e-3741.62SMESG000032101.1[more]
SMESG000032101.14.338e-3741.62SMESG000032101.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015361 ID=SMED30015361|Name=SMED30015361|organism=Schmidtea mediterranea sexual|type=transcript|length=860bp
AGGTAATGAGTAAATATACTGGCTTAAAATTTTTAATTTACTGTATAATT
TTTAATTTTTCTTTAATTCAATGTTCAGATAAAAAAATCAAGACACAAAC
AAATAACCAACTTTCAAATAAAGAATCAGAATTTGAAATTAAAGTATATG
ACAAAACGTCTAAATCATTTTGGATACTTTATAAACATAAAACCCTCAAG
TCAATAGAATATACACTAATTATGCTTTCCCCAATACAAATGACAATCAA
AACTAAATCTTCTTTTTACAAATTTGACAATTTAAAACCATGTAGAAAAT
ATTGTTTAAAAATTCGAGGTATAGACAAGTTAGGGATCATTGCGGAATCA
AAAGTAATATGCCAATACCTCAAACTTACTAACTTTGATGCAGTGACATT
GAATTCTGTTCAGTCCAAAAAGCTACCATTTATTTTACAATGGAATTATC
CGAATACTTCAAACTGTTCTGATATCACATTTACCGTAGAATACCACCTT
GTGAAGACCAGTAAACCGGTATATTCGTTGGAAACAAACCAAACGAAAGT
AGTGCTGGGTAATATTGAATATGACAAATCATACCTTGCCAAAGTTAGAC
CTGAACACGATAAGGATTATGGTAGTTTCTCCAAAGAATTGGAAATATTC
ATTAAAAAAACACCTGATATTCCAATATTCACCCCCAAACCTGATATTTC
ATTTACCACCCAAATATCAAATAATGCAACTGTCTTGAAATCAATGCGTT
TCGTTTTGTTTGGACGAATGCGTGTAGTTAATGTAAAAACTAAATCATAA
CTTTGTTTTTAATGTAAAATTACATTTATCATTAAAAAGTGCGTTTTATT
TAAAAAAAAA
back to top

protein sequence of SMED30015361-orf-1

>SMED30015361-orf-1 ID=SMED30015361-orf-1|Name=SMED30015361-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=266bp
VMSKYTGLKFLIYCIIFNFSLIQCSDKKIKTQTNNQLSNKESEFEIKVYD
KTSKSFWILYKHKTLKSIEYTLIMLSPIQMTIKTKSSFYKFDNLKPCRKY
CLKIRGIDKLGIIAESKVICQYLKLTNFDAVTLNSVQSKKLPFILQWNYP
NTSNCSDITFTVEYHLVKTSKPVYSLETNQTKVVLGNIEYDKSYLAKVRP
EHDKDYGSFSKELEIFIKKTPDIPIFTPKPDISFTTQISNNATVLKSMRF
VLFGRMRVVNVKTKS*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000232copulatory apparatus
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR036116FN3_sf
IPR013783Ig-like_fold
IPR003961FN3_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 131..220
e-value: 1.4E-6
score: 30.6
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 127..223
score: 9.255
IPR003961Fibronectin type IIICDDcd00063FN3coord: 127..215
e-value: 9.33734E-4
score: 35.5499
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.507
IPR036116Fibronectin type III superfamilySUPERFAMILYSSF49265Fibronectin type IIIcoord: 63..218