Neur_chan_LBD domain-containing protein

Overview


Name	Neur_chan_LBD domain-containing protein
Smed ID	SMED30015290
Length (bp)	2595

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Neur_chan_LBD domain-containing protein (SMED30015290) t-SNE clustered cells

Violin plots show distribution of expression levels for Neur_chan_LBD domain-containing protein (SMED30015290) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Neur_chan_LBD domain-containing protein (SMED30015290) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Neur_chan_LBD domain-containing protein (SMED30015290) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30015290

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30015290	h1SMcG0001124	dd_Smed_v4_13861_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30015290	h1SMcG0001124	dd_Smed_v4_13861_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30015290	h1SMcG0001124	dd_Smed_v4_13861_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30015290	h1SMcG0001124	dd_Smed_v4_13861_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30015290	h1SMcG0001124	dd_Smed_v4_13861_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRG3 (gamma-aminobutyric acid type A receptor gamma3 subunit [Source:HGNC Symbol;Acc:HGNC:4088])

HSP 1 Score: 69.707 bits (169), Expect = 1.190e-11
Identity = 61/252 (24.21%), Postives = 113/252 (44.84%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +  SS     E +M+     ++VE +        DQ+ W+L++   +  R  T+  T+S+  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   82 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDEHSCPLIFSSYGYPKE-EMIYRWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 320

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRG2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:HGNC Symbol;Acc:HGNC:4087])

HSP 1 Score: 67.781 bits (164), Expect = 1.680e-11
Identity = 68/271 (25.09%), Postives = 114/271 (42.07%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVV 1730
             IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V
Sbjct:    5 SIGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE--CQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVS-----VCFIFVFSALV 256

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRG2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:HGNC Symbol;Acc:HGNC:4087])

HSP 1 Score: 68.9366 bits (167), Expect = 1.940e-11
Identity = 68/272 (25.00%), Postives = 115/272 (42.28%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMF 1736
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V +
Sbjct:   72 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV-----SVCFIFVFSALVEY 324

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRG2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:HGNC Symbol;Acc:HGNC:4087])

HSP 1 Score: 68.1662 bits (165), Expect = 2.128e-11
Identity = 68/270 (25.19%), Postives = 114/270 (42.22%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVV 1730
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V
Sbjct:  101 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV-----SVCFIFVFSALV 351

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRG2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:HGNC Symbol;Acc:HGNC:4087])

HSP 1 Score: 68.1662 bits (165), Expect = 2.482e-11
Identity = 68/271 (25.09%), Postives = 114/271 (42.07%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVV 1730
             IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V
Sbjct:   76 SIGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV-----SVCFIFVFSALV 327

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Match: lgc-46 (Probable ligand-gated ion channel 46 [Source:UniProtKB/Swiss-Prot;Acc:Q95Y52])

HSP 1 Score: 55.8398 bits (133), Expect = 9.463e-8
Identity = 65/264 (24.62%), Postives = 122/264 (46.21%), Query Frame = 3

Query:  960 IGEIDTLKEI---YHADAFIQSKWRESKLD------NKPNDELKAVDLDRCWNP-LLFID----NILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFV-INQSLPRISYLTYMDKYVLMSLA-ILC 1703
            + EI T+ +I   +  D +I   W +  L+       K N  L +V L++ W P   FI+    +I        +L    N  G  +   R KL+G  +  ++L  FP D  ++T +++ E  +   D V     ++G+  Q   D+ E   +E V++ K   T+EY +       L+++    RR G++    +L  +    +S+ +FA+ +     R  L     L ++ F+F  I ++LPR+SY+  +D ++L  +  + C
Sbjct:   95 VQEITTISDITSDFQLDIYIYETWYDPALNYAFMNPCKYNLSLNSVLLEKLWTPNSCFINSKTADIHKSPFPNIFLMIYAN--GTVWTNYRLKLQGPCI--MDLTKFPFD--NVTCSLTFESFNYNTDEVKMDWSVNGV--QKMRDKMELADYELVDIHKIRTTEEYPAGYWHE--LTMSFEFKRRAGWYILQAYLPTYLTICISWISFALGSKAIPARTMLGVNSLL-AMTFQFGNIIRNLPRVSYVKAIDVWMLSCMTFVFC 347

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Match: gab-1 (Gamma-aminobutyric acid receptor subunit beta [Source:UniProtKB/Swiss-Prot;Acc:O18276])

HSP 1 Score: 54.299 bits (129), Expect = 3.282e-7
Identity = 63/270 (23.33%), Postives = 109/270 (40.37%), Query Frame = 3

Query:  960 IGEIDTLKEI---YHADAFIQSKWRESKL---DNKPNDE--LKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIE-------RRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEIDMVPD-TVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYT------SSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAIL 1700
            I   D++ E+   Y    ++   W + +L   +  P DE  L        W P  F+ N      D++    E  E+ +   I          +L      ++ L +FPLD Q+ T+ I S     SE+ M  +  + + G+              E  +V +  +T  +T      +++  +  LS+  +  R  GYF +  +L    I  LS+ +F +       R+ L  T  LT       + QSLPRISY+  +D Y++M    +
Sbjct:   86 IASFDSISEVDMDYTLTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLAN------DKHSYLHEVTERNKMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWNYPLAVHGV--------------EQADVPQFTITGFHTEDSIVSTATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRQSLPRISYVKSIDIYLVMCFVFV 335

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Match: deg-3 (Acetylcholine receptor subunit alpha-type deg-3 [Source:UniProtKB/Swiss-Prot;Acc:P54244])

HSP 1 Score: 53.9138 bits (128), Expect = 4.388e-7
Identity = 59/261 (22.61%), Postives = 102/261 (39.08%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPND----ELKAVDLDRCWNPLLFIDNILNETKDQ------------YWLTAEQNEKGETYIIERRKLKGVFLETLELND--FPLDVQDLTITISS-ERPDSEIDMVPDTVELSGINIQTFVDQQEW-----KLHEHVEVTKRVVTQEYTSSSRCHP--CLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENR---LQLSFTLFLTSVAFKFVINQSLPRIS 1652
            +I E+D   +    + ++  KWR+  LD  PN+        +     W P  ++ N +  ++D+            YW   +  E    Y         ++  T  LN   FP D Q+ T+TISS     S +D   DT     +++Q+F+  +EW     K+H H          EY  +    P   L  +    R+P Y+  N+ +    IT ++   F  P    ++R   + L  T  L       +++  +P  S
Sbjct:   88 QIIEVDEPSQNIKLNVWMIQKWRDEYLDWNPNEYGMINSTIIPFHHLWIPDTYLYNSVKMSRDETERYMNIQATSNYWKGEKGAELSFLY-------PAIYTITCRLNIRFFPYDRQNCTLTISSWTNSKSALDYYADT----EVSMQSFIPNEEWQVKSFKIHRH----------EYKYACCAEPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTPASTDDDRTEKINLGITTLLAMSILMLMVSDQMPTTS 327

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Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPND----ELKAVDLDRCWNPLLFIDNILNETKDQ------------YWLTAEQNEKGETYIIERRKLKGVFLETLELND--FPLDVQDLTITISS-ERPDSEIDMVPDTVELSGINIQTFVDQQEW-----KLHEHVEVTKRVVTQEYTSSSRCHP--CLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENR---LQLSFTLFLTSVAFKFVINQSLPRIS 1652
            +I E+D   +    + ++  KWR+  LD  PN+        +     W P  ++ N +  ++D+            YW   +  E    Y         ++  T  LN   FP D Q+ T+TISS     S +D   DT     +++Q+F+  +EW     K+H H          EY  +    P   L  +    R+P Y+  N+ +    IT ++   F  P    ++R   + L  T  L       +++  +P  S
Sbjct:   88 QIIEVDEPSQNIKLNVWMIQKWRDEYLDWNPNEYGMINSTIIPFHHLWIPDTYLYNSVKMSRDETERYMNIQATSNYWKGEKGAELSFLY-------PAIYTITCRLNIRFFPYDRQNCTLTISSWTNSKSALDYYADT----EVSMQSFIPNEEWQVKSFKIHRH----------EYKYACCAEPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTPASTDDDRTEKINLGITTLLAMSILMLMVSDQMPTTS 327

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: Lcch3 (gene:FBgn0010240 transcript:FBtr0074129)

HSP 1 Score: 51.9878 bits (123), Expect = 1.884e-6
Identity = 61/272 (22.43%), Postives = 110/272 (40.44%), Query Frame = 3

Query:  954 LKIGEIDTLKEI---YHADAFIQSKWRESKL---------DNKPNDELKAVD------LDRCWNPLLFIDN----ILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAIL 1700
            L I   D + E+   Y    ++   WR+ +L         D++ +D +  V        ++ W P  F  N     L++  ++  L     +   TY +   +        ++L+ +PLD Q+ T+ I S     S++ M      + G+     + Q     +E  +  +R+ T  Y         LS++ +  R  GYF +  +L    I  LS+ +F +       R+ L  T  LT       +  SLPRISY+  +D Y++M    +
Sbjct:   70 LTIASFDAISEVNMDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLGGDGAVTYGM---RFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRGVE-DAELPQFTIIGYETNDRKERLATGVYQR-------LSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFV 330

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: CG8916 (gene:FBgn0030707 transcript:FBtr0301233)

HSP 1 Score: 50.447 bits (119), Expect = 5.395e-6
Identity = 64/276 (23.19%), Postives = 101/276 (36.59%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKP---NDELKAVDLDRCWNPLLFIDN-----ILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQ---EWKLHE-HVEVTKRVVTQEYTSSSRCH------------PCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISI 1715
            +G +  L   Y  D + +  WR+ +L  K    +  L    LD+ W P  +  N     I   T     L  +QN  G      R  +K      +EL +FP+D Q   + I S                       +++QQ   EWK  +  V     +   ++   S  H              L V     R  GYF   V++    I  LS+ +F +      +R+ L  T  LT           LP++ Y T +D ++LMS  + CI ++
Sbjct:   42 MGPVSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQN--GGILYSMRLTIKATC--PMELQNFPMDRQSCPLVIGS---------------------YGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSF-LYCIATL 291

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: CG8916 (gene:FBgn0030707 transcript:FBtr0301232)

HSP 1 Score: 50.8322 bits (120), Expect = 5.648e-6
Identity = 64/276 (23.19%), Postives = 101/276 (36.59%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKP---NDELKAVDLDRCWNPLLFIDN-----ILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQ---EWKLHE-HVEVTKRVVTQEYTSSSRCH------------PCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISI 1715
            +G +  L   Y  D + +  WR+ +L  K    +  L    LD+ W P  +  N     I   T     L  +QN  G      R  +K      +EL +FP+D Q   + I S                       +++QQ   EWK  +  V     +   ++   S  H              L V     R  GYF   V++    I  LS+ +F +      +R+ L  T  LT           LP++ Y T +D ++LMS  + CI ++
Sbjct:  144 MGPVSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQN--GGILYSMRLTIKATC--PMELQNFPMDRQSCPLVIGS---------------------YGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSF-LYCIATL 393

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66])

HSP 1 Score: 67.781 bits (164), Expect = 2.888e-11
Identity = 65/253 (25.69%), Postives = 107/253 (42.29%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEIDMVPD--TVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +D +   Y  D F    W +S+L  K N  +K + L+     + W P  F  N  +   D +W+T           G      R  +       L+L++FP+D     +  SS   P +EI       +VE++        DQ+ W+L++   V  R  +    + S  +  +++    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   95 IGPVDPINMEYTIDIFFAQTWYDSRL--KFNSSMKLLMLNSNMVGKIWIPDTFFRN--SRKSDAHWITTPNRLLRLWSNGRVMYTLRLTINAECY--LKLHNFPMDEHSCPLEFSSYGYPKNEIQYRWQRRSVEVA--------DQRYWRLYQFAFVGLRNSSDVANTQSGEYVVMTIFFDLSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYVTAMDLFV 333

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66])

HSP 1 Score: 67.3958 bits (163), Expect = 3.821e-11
Identity = 65/253 (25.69%), Postives = 107/253 (42.29%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEIDMVPD--TVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +D +   Y  D F    W +S+L  K N  +K + L+     + W P  F  N  +   D +W+T           G      R  +       L+L++FP+D     +  SS   P +EI       +VE++        DQ+ W+L++   V  R  +    + S  +  +++    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   95 IGPVDPINMEYTIDIFFAQTWYDSRL--KFNSSMKLLMLNSNMVGKIWIPDTFFRN--SRKSDAHWITTPNRLLRLWSNGRVMYTLRLTINAECY--LKLHNFPMDEHSCPLEFSSYGYPKNEIQYRWQRRSVEVA--------DQRYWRLYQFAFVGLRNSSDVANTQSGEYVVMTIFFDLSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYVTAMDLFV 333

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrg2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65])

HSP 1 Score: 66.6254 bits (161), Expect = 4.556e-11
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  101 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPKEEIVYKWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrg2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65])

HSP 1 Score: 66.2402 bits (160), Expect = 9.587e-11
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  101 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPKEEIVYKWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrg2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:ZFIN;Acc:ZDB-GENE-091118-65])

HSP 1 Score: 65.855 bits (159), Expect = 1.088e-10
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  101 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPKEEIVYKWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: GABRG2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:NCBI gene;Acc:779514])

HSP 1 Score: 69.707 bits (169), Expect = 9.672e-12
Identity = 65/253 (25.69%), Postives = 107/253 (42.29%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+E  ++S  +  ++V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  131 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVG--------DVRSWRLYQFSFVGLRNTTEEVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 369

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: GABRG2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:NCBI gene;Acc:779514])

HSP 1 Score: 69.707 bits (169), Expect = 9.724e-12
Identity = 65/253 (25.69%), Postives = 107/253 (42.29%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+E  ++S  +  ++V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  131 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVG--------DVRSWRLYQFSFVGLRNTTEEVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 369

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: ccdc134 (coiled-coil domain containing 134 [Source:Xenbase;Acc:XB-GENE-951215])

HSP 1 Score: 65.4698 bits (158), Expect = 2.100e-10
Identity = 61/252 (24.21%), Postives = 112/252 (44.44%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +  SS     E +MV     ++VE +        +Q+ W+L++   +  R  T+   +S+  +  ++V    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   85 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDEHSCPLIFSSYGYPRE-EMVYRWRKNSVETA--------NQKSWRLYQFDFMGLRNTTEIVKTSAGDYIVMTVYFDLSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 323

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: GABRG2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:NCBI gene;Acc:779514])

HSP 1 Score: 65.0846 bits (157), Expect = 2.997e-10
Identity = 63/243 (25.93%), Postives = 102/243 (41.98%), Query Frame = 3

Query:  990 YHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+E  ++S  +  ++V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   99 YTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE--CQLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVG--------DVRSWRLYQFSFVGLRNTTEEVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 327

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: GABRG2 (gamma-aminobutyric acid (GABA) A receptor, gamma 2 [Source:NCBI gene;Acc:779514])

HSP 1 Score: 64.6994 bits (156), Expect = 3.749e-10
Identity = 63/243 (25.93%), Postives = 102/243 (41.98%), Query Frame = 3

Query:  990 YHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+E  ++S  +  ++V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   83 YTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE--CQLQLHNFPMDEHSCPLEFSSYGYPKEEIIYQWKRSSVEVG--------DVRSWRLYQFSFVGLRNTTEEVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 311

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrg3 (gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3 [Source:MGI Symbol;Acc:MGI:95624])

HSP 1 Score: 72.7886 bits (177), Expect = 8.310e-13
Identity = 62/252 (24.60%), Postives = 114/252 (45.24%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +T SS     E +M+     ++VE +        DQ+ W+L++   +  R  T+  T+S+  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   82 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDAHACPLTFSSYGYPKE-EMIYRWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 320

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrg2 (gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 [Source:MGI Symbol;Acc:MGI:95623])

HSP 1 Score: 68.5514 bits (166), Expect = 1.205e-11
Identity = 68/273 (24.91%), Postives = 115/273 (42.12%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMF 1736
             IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V +
Sbjct:   99 SIGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVS-----VCFIFVFSALVEY 352

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrg2 (gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 [Source:MGI Symbol;Acc:MGI:95623])

HSP 1 Score: 68.5514 bits (166), Expect = 1.802e-11
Identity = 68/272 (25.00%), Postives = 115/272 (42.28%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMF 1736
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V +
Sbjct:  100 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV-----SVCFIFVFSALVEY 352

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrg2 (gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 [Source:MGI Symbol;Acc:MGI:95623])

HSP 1 Score: 68.1662 bits (165), Expect = 2.022e-11
Identity = 68/272 (25.00%), Postives = 115/272 (42.28%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMF 1736
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   ++S  +  +SV    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V +
Sbjct:  100 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVG--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVS-----VCFIFVFSALVEY 352

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrg1 (gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1 [Source:MGI Symbol;Acc:MGI:103156])

HSP 1 Score: 63.5438 bits (153), Expect = 5.951e-10
Identity = 63/253 (24.90%), Postives = 106/253 (41.90%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEID--MVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +D +   Y  D      W +S+L  K N  +K + L+     + W P  F  N  +   D +W+T           G      R  +       L+L++FP+D     +  SS   P +EI+      +VE++        D + W+L++   V  R  T+   + S  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   99 IGPVDPINMEYTIDIIFAQTWFDSRL--KFNSTMKVLMLNSNMVGKIWIPDTFFRN--SRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAECY--LQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVA--------DPKYWRLYQFAFVGLRNSTEISHTISGDYIIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 337

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P27681|GBRG3_MOUSE (Gamma-aminobutyric acid receptor subunit gamma-3 OS=Mus musculus OX=10090 GN=Gabrg3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 5.813e-12
Identity = 62/252 (24.60%), Postives = 114/252 (45.24%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +T SS     E +M+     ++VE +        DQ+ W+L++   +  R  T+  T+S+  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   82 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDAHACPLTFSSYGYPKE-EMIYRWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 320

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P28473|GBRG3_RAT (Gamma-aminobutyric acid receptor subunit gamma-3 OS=Rattus norvegicus OX=10116 GN=Gabrg3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.916e-12
Identity = 62/252 (24.60%), Postives = 114/252 (45.24%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +T SS     E +M+     ++VE +        DQ+ W+L++   +  R  T+  T+S+  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   82 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDAHACPLTFSSYGYPKE-EMIYRWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 320

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|Q99928|GBRG3_HUMAN (Gamma-aminobutyric acid receptor subunit gamma-3 OS=Homo sapiens OX=9606 GN=GABRG3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.716e-11
Identity = 61/252 (24.21%), Postives = 113/252 (44.84%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNIL---NETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV----PDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D F    W +S+L  + N  +K + L+     L++I + +   ++T + +W+T           G+     R  +       L+L++FP+D     +  SS     E +M+     ++VE +        DQ+ W+L++   +  R  T+  T+S+  +  +++    SRR GYF    ++       LS+ +F +       R  L  T  LT      +  +SLPR+SY+T MD +V
Sbjct:   82 IGPVSSINMEYQIDIFFAQTWTDSRL--RFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDEHSCPLIFSSYGYPKE-EMIYRWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFV 320

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P34904|GBRG4_CHICK (Gamma-aminobutyric acid receptor subunit gamma-4 OS=Gallus gallus OX=9031 GN=GABRG4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.269e-11
Identity = 64/253 (25.30%), Postives = 108/253 (42.69%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +  ++  Y  D F    W + +L  + N  LKA+ L+     R W P  F  N  ++  D +W+T           G+     R  ++   L  L+L +FP+D     +  SS   P  EI       ++E+S        DQ+ W+L++      R  ++   + +  +  ++V+   SRR GYF    ++       LS+ +F +       R  L  T  LT      +  + LPR+SY+T MD +V
Sbjct:   84 IGPVSVIQMEYTIDIFFAQTWYDRRL--RFNSTLKALTLNTNMVSRIWIPDTFFRN--SKRADSHWITTPNQLLRIWNDGKVLYTLRLTIEAECL--LQLQNFPMDTHSCPLVFSSYGYPREEIVYRWRRYSIEVS--------DQRTWRLYQFDFTGLRNTSEVLRTGAGEYMVMTVSFDLSRRMGYFAIQTYIPCILTVVLSWVSFWIKRDSTPARTSLGITTVLTMTTLSTISRKHLPRVSYITAMDLFV 322

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P22300|GBRG2_BOVIN (Gamma-aminobutyric acid receptor subunit gamma-2 OS=Bos taurus OX=9913 GN=GABRG2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.080e-10
Identity = 68/272 (25.00%), Postives = 116/272 (42.65%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMF 1736
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T           G      R  +       L+L++FP+D     +  SS   P  EI       +VE+S        D + W+L++   V  R  T+   ++S  +  ++V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ ++V +
Sbjct:  101 IGPVNAINMEYTIDIFFGQTWYDRRL--KFNSTIKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAEC--QLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVS--------DTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV-----SVCFIFVFSALVEY 353

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BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A4S2LIX3 (Neur_chan_LBD domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007218 PE=3 SV=1)

HSP 1 Score: 512.301 bits (1318), Expect = 4.461e-168
Identity = 257/435 (59.08%), Postives = 308/435 (70.80%), Query Frame = 3

Query:  951 FLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFI-----KPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEK------NRLALELRITAKFQK----KVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYKEWVKRNKE 2210
            FLKIGEIDTLKEIYHADAFIQ+KWRE +LD K  +EL+ +DL RCWNPL+ IDNILNE+KDQ+W+     +  E YI+ERR+L+G+FLETLELNDFPLDVQDLTIT++SERPD+E+ +VPD  EL  IN+QT VDQQEW+LHEH+EVT+R  TQEYT+SS+ HPC+SVTCRA+RRPGYFYWNVFL+MFFITGLSFATFAVP  R ENRLQLSFTLFLTSVAFKFVINQSLP+ISYLTYMDKYVLMSLAILC++SIWH+VV  I     KP ++    TT   I  Q P +     +    F P         +      P   K+  D  N   +T      I     +    IS+ K        LA +    AK Q+    ++E+++F SF +LY  AH  FI WLYFDAS RRREM+E DRQYK W+  NKE
Sbjct:  215 FLKIGEIDTLKEIYHADAFIQAKWREPRLDGKSEEELRKIDLQRCWNPLILIDNILNESKDQHWINTHTGDNNEIYIVERRRLRGIFLETLELNDFPLDVQDLTITLTSERPDTEVALVPDKNELCAINVQTLVDQQEWRLHEHIEVTRRSATQEYTNSSQHHPCISVTCRAARRPGYFYWNVFLIMFFITGLSFATFAVPPERPENRLQLSFTLFLTSVAFKFVINQSLPKISYLTYMDKYVLMSLAILCVVSIWHAVVTLIPTDEWKPVSVRSETTT--AIGEQNPSDITAGLANPLTFTPLLLIRQSMNMSD---KPMEGKKVRDTIN---VTRLNRTHIADEFGAINTTISKFKLGPIDWQALAKQTTQDAKTQRRLKLRIEQEVFASFCVLYILAHLTFIFWLYFDASARRREMVELDRQYKRWLHANKE 641

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BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A4S2LQ23 (Neur_chan_LBD domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_007218 PE=3 SV=1)

HSP 1 Score: 511.916 bits (1317), Expect = 5.419e-168
Identity = 255/429 (59.44%), Postives = 308/429 (71.79%), Query Frame = 3

Query:  951 FLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFI-----KPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQK----KVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYKEWVKRNKE 2210
            FLKIGEIDTLKEIYHADAFIQ+KWRE +LD K  +EL+ +DL RCWNPL+ IDNILNE+KDQ+W+     +  E YI+ERR+L+G+FLETLELNDFPLDVQDLTIT++SERPD+E+ +VPD  EL  IN+QT VDQQEW+LHEH+EVT+R  TQEYT+SS+ HPC+SVTCRA+RRPGYFYWNVFL+MFFITGLSFATFAVP  R ENRLQLSFTLFLTSVAFKFVINQSLP+ISYLTYMDKYVLMSLAILC++SIWH+VV  I     KP ++    TT   I  Q P +     +    F P         +    M     K +  + N+  + +         SK    PI  +   LA +    AK Q+    ++E+++F SF +LY  AH  FI WLYFDAS RRREM+E DRQYK W+  NKE
Sbjct:  215 FLKIGEIDTLKEIYHADAFIQAKWREPRLDGKSEEELRKIDLQRCWNPLILIDNILNESKDQHWINTHTGDNNEIYIVERRRLRGIFLETLELNDFPLDVQDLTITLTSERPDTEVALVPDKNELCAINVQTLVDQQEWRLHEHIEVTRRSATQEYTNSSQHHPCISVTCRAARRPGYFYWNVFLIMFFITGLSFATFAVPPERPENRLQLSFTLFLTSVAFKFVINQSLPKISYLTYMDKYVLMSLAILCVVSIWHAVVTLIPTDEWKPVSVRSETTT--AIGEQNPSDITAGLANPLTFTPLLLIRQSMNMSDKPMEG--KKINVTRLNRTHIADEFGAINTTISKFKLGPIDWQA--LAKQTTQDAKTQRRLKLRIEQEVFASFCVLYILAHLTFIFWLYFDASARRREMVELDRQYKRWLHANKE 637

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BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A5K4FB25 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 506.138 bits (1302), Expect = 3.279e-165
Identity = 256/438 (58.45%), Postives = 322/438 (73.52%), Query Frame = 3

Query:  951 FLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHI----------PIVARSKSTELPISEEKNR---LALELRITAKFQKK------VERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYKEWVKRNK 2207
            FLKIGEIDTLKEIYHADAFIQ+KWRE +LD K ++ L+ +DL RCWNPL+ IDNIL+E+K+Q+W+  E+NE  E +I+ERR+L+GVFLETLELNDFPLDVQDLTIT++SERP+SE++++PD  E   IN+QT VDQQEW+LHEH+E+T+R  TQEYT+SS+ HPC+SVTCRA+RRPGYFYWNVFL+MFFITGLSFATFAVP  R ENRLQLSFTLFLTSVAFKFVINQSLP+ISYLTYMDKYVLMSLAILC++S+WH+VV  I P +      T K +   T         YK L  P  +T+  T    +  + S +     K+N  L+   K             IV R  S +L  S++ N+   +AL L+  ++ Q K      +ERD+F+SF +LY  AH  FI WLYFDASKRRREM+E+DR YK+ ++ +K
Sbjct:  249 FLKIGEIDTLKEIYHADAFIQAKWREPRLDGKTDECLRKIDLQRCWNPLILIDNILSESKEQHWIITERNENDEIFIVERRRLRGVFLETLELNDFPLDVQDLTITLTSERPESEVELIPDKYEPCRINLQTLVDQQEWRLHEHIEITRRSATQEYTNSSQSHPCISVTCRAARRPGYFYWNVFLIMFFITGLSFATFAVPPERPENRLQLSFTLFLTSVAFKFVINQSLPKISYLTYMDKYVLMSLAILCVVSVWHAVVTLI-PSDAEFEQLTTKNLLKTTNPQFSFMKRYKGLTFPYSSTVNVTSRQIN--DASIDDHVDVKNNTSLIQIEKSTNGDITSNDDKQIVDRQNSQKL--SQQLNQQTWIALALQSKSREQHKRRLMMRIERDVFVSFCILYVLAHLTFIFWLYFDASKRRREMVERDRLYKKSMQASK 681

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BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A5J4NW13 (Neur_chan_LBD domain-containing protein OS=Paragonimus westermani OX=34504 GN=DEA37_0007322 PE=3 SV=1)

HSP 1 Score: 504.982 bits (1299), Expect = 6.168e-165
Identity = 255/444 (57.43%), Postives = 321/444 (72.30%), Query Frame = 3

Query:  951 FLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNM---------GITITTIKPITVQT---PVNSDNNTS-YKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTEL-----PISEEKNRL--------------ALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYK 2186
            FLKIGEIDTLKE YHADAFIQ KWRE +LD K ++EL+ +DL RCWNPL+ IDNIL+E+KDQ+W   +++E+ E YI+ERR+L+GVFLETLELNDFPLDVQDLTIT++SERPDSE+ +VPD  EL GIN+QT VDQQEWKLHEH+EVT+R  TQEYT+SS+ HPCLSVTCRA+RRPGYFYWNVFL+MFFITGLSFATFAVP  R ENRLQLSFTLFLTSVAFKFVINQSLP+ISYLTYMDKYVLMSLAILC++SIWH+VV  I P +            T++ ++  T  T   P++ ++  S   ++F+          L +S       +   +++ +  LT +  IP  + + +T+L     P +E K  +               ++ R   + +  +ERD+F SF +LY  AH  FI WLYFDASKRRREM+E+D+QYK
Sbjct:  222 FLKIGEIDTLKETYHADAFIQVKWREPRLDGKTDEELRRIDLQRCWNPLILIDNILSESKDQHWSLTQKSEQNEVYIVERRRLRGVFLETLELNDFPLDVQDLTITLTSERPDSEVILVPDRNELCGINLQTLVDQQEWKLHEHIEVTRRSATQEYTNSSQHHPCLSVTCRAARRPGYFYWNVFLIMFFITGLSFATFAVPPERPENRLQLSFTLFLTSVAFKFVINQSLPKISYLTYMDKYVLMSLAILCVVSIWHAVVTLI-PTDAEFEQSAYESAQTLSLLRSPTFNTYSGPLHDESGESDNTRMFQ----NDSGQNLDESLQMHYLYRAQENQTGQSALTPSTAIP--SNTLTTQLVGEFSPFTEPKPSVDWETKQWQDLARHHTIQEREKRRLKMMIERDVFTSFCVLYVLAHLTFIFWLYFDASKRRREMVERDKQYK 658

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BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: G7Y830 (Gamma-aminobutyric acid receptor subunit gamma-3 OS=Clonorchis sinensis OX=79923 GN=CLF_102521 PE=3 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 1.768e-159
Identity = 261/459 (56.86%), Postives = 319/459 (69.50%), Query Frame = 3

Query:  951 FLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFI-----KPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEK------NRLALELRITAKFQK----KVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYK--EWVKRNKEWVDNHNQQHSHGHRNSNILMNR 2276
            FLKIGEIDTLKEIYHADAFIQ+KWRE +LD K  +EL+ +DL RCWNPL+ IDNILNE+KDQ+W+     +  E YI+ERR+L+G+FLETLELNDFPLDVQDLTIT++SERPD+E+ +VPD  EL  IN+QT VDQQEW+LHEH+EVT+R  TQEYT+SS+ HPC+SVTCRA+RRPGYFYWNVFL+MFFITGLSFATFAVP  R ENRLQLSFTLFLTSVAFKFVINQSLP+ISYLTYMDKYVLMSLAILC++SIWH+VV  I     KP ++    TT   I  Q P N+    +    F P         +      P+  K+  D  N   +T      I     +    IS+ K        LA +    AK Q+    ++E+++F SF +LY  AH  FI WLYFDAS RRREM+E DRQYK  + + ++     NH Q+ S   +NS    +R
Sbjct:  213 FLKIGEIDTLKEIYHADAFIQAKWREPRLDGKTEEELRKIDLQRCWNPLILIDNILNESKDQHWINTHTGDNNEIYIVERRRLRGIFLETLELNDFPLDVQDLTITLTSERPDTEVALVPDKNELCAINVQTLVDQQEWRLHEHIEVTRRSATQEYTNSSQHHPCISVTCRAARRPGYFYWNVFLIMFFITGLSFATFAVPPERPENRLQLSFTLFLTSVAFKFVINQSLPKISYLTYMDKYVLMSLAILCVVSIWHAVVTLIPTDEWKPASVRSETTTA--IGEQNPSNTTAGLASPLTFTPLLLIRQSVNMSD---KPTEGKKVWDAIN---VTRLNRTQIADEFSAINTTISKFKLGPIDWQALAKQTTQDAKTQRRLKLRIEQEVFASFCVLYILAHLTFIFWLYFDASARRREMVELDRQYKMSQRISQSGHSSQNH-QRFSFNKKNSYSFPDR 662

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:NCBI gene;Acc:103030074])

HSP 1 Score: 68.9366 bits (167), Expect = 1.018e-11
Identity = 64/251 (25.50%), Postives = 106/251 (42.23%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +D +   Y  D F    W +S+L  + N  +K + L+     + W P  F  N  +   D +W+T           G      R  +       L+L++FP+D     +  SS   P +EI+      +     +Q   DQ+ W+L++   V  +  T    + S  +  +S+    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   89 IGPVDPINMEYTIDIFFAQSWYDSRL--QFNSSMKVLMLNSNMVGKIWIPDTFFRN--SRKSDAHWITTPNRLLRLWSNGRVMYTLRLTINAECY--LKLHNFPMDEHSCPLEFSSYGYPKNEIEY-----KWHSRAVQV-ADQRYWRLYQFAFVGLQNTTGIAHTQSGDYVVMSILFTLSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYVTAMDLFV 327

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:103027255])

HSP 1 Score: 65.0846 bits (157), Expect = 1.506e-10
Identity = 65/252 (25.79%), Postives = 107/252 (42.46%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
             IG ++ +   Y  D F    W +S+L  + N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+L +FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   93 SIGPVNAINMEYTIDIFFAQTWYDSRL--RFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLYNFPMDEHSCPLEFSSYGYPKEEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNSTEVVRTVSGDYVVLTVFFELSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 332

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:103027255])

HSP 1 Score: 65.0846 bits (157), Expect = 1.550e-10
Identity = 67/269 (24.91%), Postives = 115/269 (42.75%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVV 1730
             IG ++ +   Y  D F    W +S+L  + N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+L +FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V      +C I ++ +++
Sbjct:   94 SIGPVNAINMEYTIDIFFAQTWYDSRL--RFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLYNFPMDEHSCPLEFSSYGYPKEEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNSTEVVRTVSGDYVVLTVFFELSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVS-----VCFIFVFAALI 345

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:103027255])

HSP 1 Score: 65.0846 bits (157), Expect = 1.724e-10
Identity = 65/252 (25.79%), Postives = 107/252 (42.46%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
             IG ++ +   Y  D F    W +S+L  + N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+L +FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  T+   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   93 SIGPVNAINMEYTIDIFFAQTWYDSRL--RFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLYNFPMDEHSCPLEFSSYGYPKEEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNSTEVVRTVSGDYVVLTVFFELSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 332

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: GABRG3 (gamma-aminobutyric acid type A receptor gamma3 subunit [Source:NCBI gene;Acc:103040847])

HSP 1 Score: 63.5438 bits (153), Expect = 5.284e-10
Identity = 61/251 (24.30%), Postives = 106/251 (42.23%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFI-DNILNETK--DQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS---ERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG + ++   Y  D      W +S+L  + N  +K + L+     L+++ D I   +K  D +W+T           G+     R  +       L+L++FP+D     +  SS    R +       ++VE +        DQ+ W+L++   +  R  T    +++  +  ++V    SRR GYF    ++       LS+ +F +       R  L  T  LT      V   SLPR+SY+T MD +V
Sbjct:  147 IGPVSSINMEYQIDIIFAQTWTDSRL--RYNSTMKILTLNSNMVGLIWVPDTIFRNSKNADSHWITTPNQLLRIWNDGKILYTLRLTINAEC--QLQLHNFPMDEHSCPLIFSSYGYPRDEMIYKWRKNSVEAA--------DQKSWRLYQFDFMGLRNTTDVIKTTAGDYVVMTVYFDLSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTVARTSLPRVSYVTAMDLFV 385

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Match: glra2 (glycine receptor, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-090407-1])

HSP 1 Score: 51.9878 bits (123), Expect = 3.995e-7
Identity = 61/273 (22.34%), Postives = 114/273 (41.76%), Query Frame = 3

Query:  963 GEIDTLKEIYHADAFIQSKWRESKL--DNKPND--ELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETY----IIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMV-----PDTVELS-GINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFI 1739
            G I      Y  + F++ +W + +L     P+D  +L    LD  W P LF  N   E    +      N+    +    ++   +L       ++L +FP+DVQ   + + S       D++        V+++ G+ +  FV + E    + V  TK   T ++T       C+ V     R+ GY+   +++    I  LS+ +F +    A  R+ L  T  LT          SLP++SY+  +D ++ + L  +    + ++ V F+
Sbjct:   18 GSIAETTMDYRVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFAN---EKGANFHEVTTDNKLLRIFKDGNVLYSIRLTLTLSCPMDLKNFPMDVQTCAMQLESFGYTMN-DLIFEWKQEGAVQVAEGLTLPQFVLKDE---KDLVYCTKHYNTGKFT-------CIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFV 276

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002305.1 (pep scaffold:Pmarinus_7.0:GL478144:76380:93696:1 gene:ENSPMAG00000002075.1 transcript:ENSPMAT00000002305.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.9062 bits (115), Expect = 3.305e-6
Identity = 53/251 (21.12%), Postives = 104/251 (41.43%), Query Frame = 3

Query:  963 GEIDTLKEIYHADAFIQSKWRESKLDN--------KPNDELKAVDLDRCWNPLLFIDN----ILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            G I+     Y    ++Q  W +S++++        K   +L    +D  W P LF +N      +E   ++ +          + +    L       + L  +PLD Q+  I + S    ++ D++    E   + + T +   ++KL  H E+     ++EY + +  H C++ T    R  GY+   V+     +  +S+ +F +       R+ L  T  LT        N +LP++SY+  MD ++
Sbjct:   69 GPIEENTMDYMMLIYLQQSWIDSRIESIYSAGHYQKDFLDLANNYIDTVWTPDLFFENEKSAAFHEIHCRFSIIVHATNNKTCFSL---VLSLTLACPMNLEYYPLDTQECRINLESFGYTTQ-DLIFQWDENEPLVVATNLYTPKFKLSNHTELGD--CSKEYLTGT--HSCINATFYLHRDMGYYLIQVYFPSCLLVIISWLSFWLSVESTPARVSLGITTILTVTTQMTSANAALPKMSYIKAMDVWM 311

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO32790 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SU26])

HSP 1 Score: 140.198 bits (352), Expect = 6.619e-36
Identity = 87/266 (32.71%), Postives = 145/266 (54.51%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDN--ILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQE---YTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIK 1742
            +G+ID +++ +  + ++ + WRE KL  K N+E+K    D  W+P +   N  +L+       L  E+N        E  K++G F E   L  FP+D+Q+L+I ISS+  D  +    D  +   +  QTF   ++W L+ HV       TQE      + R +P   +T    RR  +++WN  +VM  +T LSFA+FA+P  +  +RL ++  L L SVA+KFV +  LPR SYLT++DKY L +L  +  I++ +++ + ++
Sbjct:   27 LGDIDVIRQQFTCELWMTASWREPKLAGKKNEEVK---WDNEWSPKISFSNSLLLDRVYKGRRLYYEENST-VPLAQEVYKIRGTFKEQFSLEQFPVDLQELSIIISSDWSDRTVTFEKDMAKPDYLRQQTFSSPRDWVLYPHVHTD--TATQEGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFISFIAVLNTIAVAVE 286

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO26859 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TAV8])

HSP 1 Score: 87.0409 bits (214), Expect = 9.831e-20
Identity = 50/137 (36.50%), Postives = 81/137 (59.12%), Query Frame = 3

Query: 1341 QTFVDQQEWKLHEHVEVTKRVVTQE---YTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIK 1742
            QTF   ++W L+ HV       TQE      + R +P   +T    RR  +++WN  +VM  +T LSFA+FA+P  +  +RL ++  L L SVA+KFV +  LPR SYLT++DKY L +L  +  I++ +++ + ++
Sbjct:   10 QTFSSPRDWVLYPHVH--TDTATQEGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFISFIAVLNTIAVAVE 144

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO40746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6G8])

HSP 1 Score: 61.6178 bits (148), Expect = 1.835e-10
Identity = 58/246 (23.58%), Postives = 111/246 (45.12%), Query Frame = 3

Query:  990 YHADAFIQSKWRESKLDNKPND--ELKAVDLDRCWNP-LLFIDNILNETKD------QYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAIL 1700
            +  D ++   W++ +     N    L  + +DR W P   F++++  E         + WL  +Q      +I+   +LK      ++L  +P+D+Q   + + S   D E D++ +  +  G ++  F+   E      V V +++    Y   SR    ++VT +  RR  Y+ + +++    I  LS+ +F V       R+ LS T  LT       +N +LPR+SYL  +D ++L+S   +
Sbjct:    1 FTMDIYLGQFWQDPRFAFGLNKTVSLGGLFVDRFWIPDTFFVNSVDTEIHKMISPNKKVWLNLDQG-----HIMLSTRLKSRATCKMDLRKYPMDLQTCHLALESFSFDEE-DLMYEWKKPVGSDV--FIYDAEMAQFTVVNVKRKLKHPLY--HSRRFSGMTVTFKFQRRTMYYIFQMYIPCVCIVALSWVSFWVDADAVPARVGLSITTVLTICYMLGSVNSNLPRVSYLKAIDYFLLLSFGFI 236

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO37555 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFG6])

HSP 1 Score: 63.1586 bits (152), Expect = 2.160e-10
Identity = 62/272 (22.79%), Postives = 120/272 (44.12%), Query Frame = 3

Query:  954 LKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVD--LDRCWNPLLFIDNILNETKDQYWLTAEQNEK------GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSE-IDMVPDTVELSGINIQTFV-DQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFI 1739
            L I  I+ +   Y  D F++  WR+ +L ++ +D L   +  LD+ W P  +    +N    ++      N+       G  +   R  +K      L +  FP DVQ+  I I S    ++ +    +    +GI +   + D  ++ L + + V++        + S     L+ T R  RR GYF  +++     I  LS+ +F +P      R+ L  T  LT      ++N S+P++SY+  +D Y++     +  + + ++ V++I
Sbjct:   39 LSIDAINVIDMDYRMDFFLRQLWRDPRLKHRFDDTLALSNTMLDKIWVPDTYF---VNSKMSKFHSVTTINKMLSISPDGLVHYNSRVTVKASCAMNLRM--FPKDVQNCNIDIESYGYSADNVQYQWENRSDNGIAVNKKIRDMPQYNLSD-INVSRHFTMYVAGNWSG----LTATFRFRRRSGYFIIHIYAPCALIVILSWISFCIPPESTAARIALGITSVLTITTILNMLNNSMPKVSYVKAVDWYLIGCFLFVFAVLLEYTFVLYI 300

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO32053 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SW63])

HSP 1 Score: 60.8474 bits (146), Expect = 6.970e-10
Identity = 60/262 (22.90%), Postives = 116/262 (44.27%), Query Frame = 3

Query:  984 EIYHADAFIQSKWRESKLDNKPND--ELKAVDL--DRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLET--------LELNDFPLDVQDLTITISSERPDS-EIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKY-------VLMSLAILCII 1709
            +I   + +I+  W++  L   P+D   +K++++  DR W P + +    N T  ++      N K +T +I        +L          +++  FP DVQ   +T  S   D  +ID+     + SGI+ + F D +EW L      + R   + Y      +P ++ T    RR  ++ +N+ L    I  LS  +F +P    E R+    T+ L    +  ++ +++PR + +  + K+       + +SLA  C++
Sbjct:   45 QILTINVWIRQYWKDHLLKWNPDDFGGIKSINIAPDRVWKPDVLL---YNRTDLRF---GSLNNKIDTNVIVNHDGSTTWLAPAIIKSECKIDVRFFPFDVQSCELTFGSWTHDGLKIDI--HLKQESGIDTENFSDNREWFLK---GTSGRRDVKMYICCPEPYPTVTYTIILRRRAMFYVFNMVLPTGVIALLSLFSFYLPPNSGE-RVSFVITVLLAMSVYLIMVTENIPRSTDIPLVSKFFMASMIQIALSLAATCVV 294

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrg1 (gamma-aminobutyric acid type A receptor gamma1 subunit [Source:NCBI gene;Acc:101155813])

HSP 1 Score: 66.6254 bits (161), Expect = 4.660e-11
Identity = 65/253 (25.69%), Postives = 106/253 (41.90%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG +D +   Y  D F    W +S+L  K N  +K + L+     + W P  F  N  +   D +W+T           G      R  +       L+L++FP+D     +  SS   P +EI        VE++        DQ+ W+L++   V  R  +    + S  +  +++    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   88 IGPVDPINMEYTIDIFFAQTWYDSRL--KFNSSMKLLMLNSNMVGKIWIPDTFFRN--SRKSDAHWITTPNRLLRLWSNGRVMYTLRLTINAECY--LKLHNFPMDEHSCPLEFSSYGYPRNEIMYRWQRRAVEVA--------DQRYWRLYQFAFVGMRNTSDVAHTQSGEYVIMTIFFDLSRRMGYFTIQTYIPCSMIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTISRKSLPKVSYITAMDLFV 326

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:101168976])

HSP 1 Score: 66.2402 bits (160), Expect = 7.029e-11
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:   66 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPREEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 304

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:101168976])

HSP 1 Score: 65.855 bits (159), Expect = 8.994e-11
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  100 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPREEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 338

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrg2 (gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:101168976])

HSP 1 Score: 65.855 bits (159), Expect = 9.601e-11
Identity = 65/251 (25.90%), Postives = 107/251 (42.63%), Query Frame = 3

Query:  960 IGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLD-----RCWNPLLFIDNILNETKDQYWLTAEQNEK---GETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYV 1679
            IG ++ +   Y  D F    W + +L  K N  +K + L+     + W P  F  N  ++  D +W+T          +  I+   +L       L+LN+FP+D     +  SS   P  EI       +VE+         D + W+L++   V  R  ++   + S  +  L+V    SRR GYF    ++    I  LS+ +F +       R  L  T  LT      +  +SLP++SY+T MD +V
Sbjct:  100 IGPVNAINMEYTIDIFFAQTWYDRRL--KFNSTMKVLRLNSNMVGKIWIPDTFFRN--SKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPREEIVYRWKRSSVEVG--------DIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFV 338

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: GABRG3 (gamma-aminobutyric acid receptor subunit gamma-3 [Source:NCBI gene;Acc:101170160])

HSP 1 Score: 65.0846 bits (157), Expect = 1.818e-10
Identity = 68/283 (24.03%), Postives = 119/283 (42.05%), Query Frame = 3

Query:  957 KIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFI-DNILNETK--DQYWLTAEQN-----EKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISS-ERPDSEI--DMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISI------WHSVVMFIKPPNM 1754
             IG + ++   Y  D      W +++L    +  ++ + L+     L+++ D I   +K  D +W+T           G+     R  +       L+L++FP+D     +  SS   P  EI      ++VE S        DQ+ W+L++   +  R  T   T+++  +  L+V    SRR GYF    ++       LS+ +F + +     R  L  T  LT      V   SLPR+SY+T MD +V +    +    I      ++S ++   PP M
Sbjct:   81 SIGPVSSIDMEYQIDIIFAQTWVDTRLRYN-SSSMRILTLNSNMVGLIWLPDTIFRNSKNADSHWITTPNQLLRIWNNGKILYTLRMTINAEC--QLQLHNFPMDEHSCPLVFSSYGYPRDEIIYKWKRNSVETS--------DQKYWRLYQFDFMGLRNTTDVLTTTAGDYVLLTVYFDLSRRMGYFTIQTYIPCILTVVLSWVSFWIKSDATPARTALGITTVLTMTTLSTVARNSLPRVSYVTAMDLFVTVCFLFVFAAMIEYAMLNYYSYIIRRPPPRM 352

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000012532.1 (SMESG000012532.1)

HSP 1 Score: 1129.78 bits (2921), Expect = 0.000e+0
Identity = 599/601 (99.67%), Postives = 601/601 (100.00%), Query Frame = 3

Query:  384 MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDXXXXXXXXXXXXXXXXXFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYK 2186
            MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNT+VYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSY+KLFEPNKNTLLKTILLKSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYK
Sbjct:    1 MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTIVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSYRKLFEPNKNTLLKTILLKSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYK 601

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000012532.1 (SMESG000012532.1)

HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 427/430 (99.30%), Postives = 429/430 (99.77%), Query Frame = 3

Query:  384 MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDXXXXXXXXXXXXXXXXXFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDK 1673
            MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNT+VYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYM +
Sbjct:    1 MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTIVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMAR 430

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000012532.1 (SMESG000012532.1)

HSP 1 Score: 819.691 bits (2116), Expect = 0.000e+0
Identity = 423/426 (99.30%), Postives = 425/426 (99.77%), Query Frame = 3

Query:  396 MNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDXXXXXXXXXXXXXXXXXFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDK 1673
            MNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNT+VYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYM +
Sbjct:    1 MNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGKDSVDKLISALELLRINIDQNTIVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMAR 426

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000008589.1 (SMESG000008589.1)

HSP 1 Score: 512.686 bits (1319), Expect = 2.330e-172
Identity = 292/624 (46.79%), Postives = 388/624 (62.18%), Query Frame = 3

Query:  402 FNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVS-NACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGK------DSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAK-KNFDVLNHDXXXXXXXXXXXXXXXXXFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYKEWVKRNKEWVDNHNQQHSHGH 2249
             NK  ++ M  KR + +D YR  ++  DD   S + E N    R   + +  +D+++      SN   N  P G   N       +   V+      I K         D+LI A+E LR +I  NT ++       RS+  G+      RR  + Y ++S+ + +N  V+ +D   +++ +  V    V FLKIGEIDTLKE+YHADAFIQ+KWRE KLD   N+EL   D+D+ W+PLL+IDNIL+ETK+  WLTA  NE  E  +IERR++KGVFLETLELNDFPLDVQDLTIT+++ERPDSEID++PD  E+S INIQTFVDQQEWKLHEHVE+TKR++ QE++SS + HPCLSVTCRA+RRPGYFYWNVFL+MF I+GLSFATF+V   +AE RL+LSFTL LTSV FK+VI QSLP+ISYLTYMDKYVLMSLAILCI+SIWH+ V  +  P+  ++  T  PI+  + + +  N+SY K F+               M    N  + D   K                  E+   E   R+     I  K  +++ERD+ ISF  LY  AH +FI WLYFDAS+RRR M +KDR Y+E++++N+EW  N  ++    H
Sbjct:   22 INKHEVKWMPLKR-FKKDIYRAIDQDDDDSFISQAYELN----RKQSDLSELVDIDIYELEGLSNKSHNRNPNGTILNESPLTPTMRRTVNSASREAINKAEYSTISPADRLIEAIESLRYSIQDNTQMH------CRSQQRGK-----TRRRMSTYGNKSQGRGENHSVIGNDNLKLRKDKVAVELRIV-FLKIGEIDTLKELYHADAFIQAKWREPKLDGHTNEELATTDMDKYWSPLLYIDNILSETKEAQWLTAVANESLEVTVIERRRIKGVFLETLELNDFPLDVQDLTITMTTERPDSEIDLIPDQTEMSAINIQTFVDQQEWKLHEHVEITKRIILQEFSSSMKSHPCLSVTCRAARRPGYFYWNVFLIMFMISGLSFATFSVSPEKAEYRLRLSFTLVLTSVTFKYVITQSLPKISYLTYMDKYVLMSLAILCIVSIWHACVTLV--PH--VSKVTNGPISNSSSIINRINSSYSKEFQKRLEEKSPF------MKSVINTVNNDNDKK-----------------DEVQEDETGERVLTPGEI--KLLRRIERDVLISFGCLYIIAHCIFIFWLYFDASRRRRLMRQKDRDYREFLQKNREWQQNTKKRRDQMH 599

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000008589.1 (SMESG000008589.1)

HSP 1 Score: 497.278 bits (1279), Expect = 1.447e-166
Identity = 286/604 (47.35%), Postives = 376/604 (62.25%), Query Frame = 3

Query:  402 FNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGRPNCEKTHPIDVNVVS-NACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYGSEIGK------DSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHRRNTAGYSDESEAK-KNFDVLNHDXXXXXXXXXXXXXXXXXFLKIGEIDTLKEIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKDQYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSERPDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSRCHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQLSFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVMFIKPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPXXXXXXXXXXXXSRMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELRITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQYKE 2189
             NK  ++ M  KR + +D YR  ++  DD   S + E N    R   + +  +D+++      SN   N  P G   N       +   V+      I K         D+LI A+E LR +I  NT ++       RS+  G+      RR  + Y ++S+ + +N  V+ +D   +++ +  V    V FLKIGEIDTLKE+YHADAFIQ+KWRE KLD   N+EL   D+D+ W+PLL+IDNIL+ETK+  WLTA  NE  E  +IERR++KGVFLETLELNDFPLDVQDLTIT+++ERPDSEID++PD  E+S INIQTFVDQQEWKLHEHVE+TKR++ QE++SS + HPCLSVTCRA+RRPGYFYWNVFL+MF I+GLSFATF+V   +AE RL+LSFTL LTSV FK+VI QSLP+ISYLTYMDKYVLMSLAILCI+SIWH+ V  +  P+  ++  T  PI+  + + +  N+SY K F+               M    N  + D   K                  E+   E   R+     I  K  +++ERD+ ISF  LY  AH +FI WLYFDAS+RRR M +KDR Y++
Sbjct:   22 INKHEVKWMPLKR-FKKDIYRAIDQDDDDSFISQAYELN----RKQSDLSELVDIDIYELEGLSNKSHNRNPNGTILNESPLTPTMRRTVNSASREAINKAEYSTISPADRLIEAIESLRYSIQDNTQMH------CRSQQRGKT-----RRRMSTYGNKSQGRGENHSVIGNDNLKLRKDKVAVELRIV-FLKIGEIDTLKELYHADAFIQAKWREPKLDGHTNEELATTDMDKYWSPLLYIDNILSETKEAQWLTAVANESLEVTVIERRRIKGVFLETLELNDFPLDVQDLTITMTTERPDSEIDLIPDQTEMSAINIQTFVDQQEWKLHEHVEITKRIILQEFSSSMKSHPCLSVTCRAARRPGYFYWNVFLIMFMISGLSFATFSVSPEKAEYRLRLSFTLVLTSVTFKYVITQSLPKISYLTYMDKYVLMSLAILCIVSIWHACVTLV--PH--VSKVTNGPISNSSSIINRINSSYSKEFQKRLEEKSPF------MKSVINTVNNDNDKK-----------------DEVQEDETGERVLTPGEI--KLLRRIERDVLISFGCLYIIAHCIFIFWLYFDASRRRRLMRQKDRDYRK 579

The following BLAST results are available for this feature:

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GABRG3	1.190e-11	24.21	gamma-aminobutyric acid type A receptor gamma3 sub...	[more]
GABRG2	1.680e-11	25.09	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
GABRG2	1.940e-11	25.00	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
GABRG2	2.128e-11	25.19	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
GABRG2	2.482e-11	25.09	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
lgc-46	9.463e-8	24.62	Probable ligand-gated ion channel 46 [Source:UniP...	[more]
gab-1	3.282e-7	23.33	Gamma-aminobutyric acid receptor subunit beta [So...	[more]
deg-3	4.388e-7	22.61	Acetylcholine receptor subunit alpha-type deg-3 [...	[more]
deg-3	4.388e-7	22.61	Acetylcholine receptor subunit alpha-type deg-3 [...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Lcch3	1.884e-6	22.43	gene:FBgn0010240 transcript:FBtr0074129	[more]
CG8916	5.395e-6	23.19	gene:FBgn0030707 transcript:FBtr0301233	[more]
CG8916	5.648e-6	23.19	gene:FBgn0030707 transcript:FBtr0301232	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrg1	2.888e-11	25.69	gamma-aminobutyric acid type A receptor gamma1 sub...	[more]
gabrg1	3.821e-11	25.69	gamma-aminobutyric acid type A receptor gamma1 sub...	[more]
gabrg2	4.556e-11	25.90	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]
gabrg2	9.587e-11	25.90	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]
gabrg2	1.088e-10	25.90	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GABRG2	9.672e-12	25.69	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]
GABRG2	9.724e-12	25.69	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]
ccdc134	2.100e-10	24.21	coiled-coil domain containing 134 [Source:Xenbase;...	[more]
GABRG2	2.997e-10	25.93	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]
GABRG2	3.749e-10	25.93	gamma-aminobutyric acid (GABA) A receptor, gamma 2...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Gabrg3	8.310e-13	24.60	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrg2	1.205e-11	24.91	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrg2	1.802e-11	25.00	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrg2	2.022e-11	25.00	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrg1	5.951e-10	24.90	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P27681\|GBRG3_MOUSE	5.813e-12	24.60	Gamma-aminobutyric acid receptor subunit gamma-3 O...	[more]
sp\|P28473\|GBRG3_RAT	5.916e-12	24.60	Gamma-aminobutyric acid receptor subunit gamma-3 O...	[more]
sp\|Q99928\|GBRG3_HUMAN	5.716e-11	24.21	Gamma-aminobutyric acid receptor subunit gamma-3 O...	[more]
sp\|P34904\|GBRG4_CHICK	9.269e-11	25.30	Gamma-aminobutyric acid receptor subunit gamma-4 O...	[more]
sp\|P22300\|GBRG2_BOVIN	1.080e-10	25.00	Gamma-aminobutyric acid receptor subunit gamma-2 O...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4S2LIX3	4.461e-168	59.08	Neur_chan_LBD domain-containing protein OS=Opistho...	[more]
A0A4S2LQ23	5.419e-168	59.44	Neur_chan_LBD domain-containing protein OS=Opistho...	[more]
A0A5K4FB25	3.279e-165	58.45	Uncharacterized protein OS=Schistosoma mansoni OX=...	[more]
A0A5J4NW13	6.168e-165	57.43	Neur_chan_LBD domain-containing protein OS=Paragon...	[more]
G7Y830	1.768e-159	56.86	Gamma-aminobutyric acid receptor subunit gamma-3 O...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrg1	1.018e-11	25.50	gamma-aminobutyric acid type A receptor gamma1 sub...	[more]
gabrg2	1.506e-10	25.79	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
gabrg2	1.550e-10	24.91	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
gabrg2	1.724e-10	25.79	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
GABRG3	5.284e-10	24.30	gamma-aminobutyric acid type A receptor gamma3 sub...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
glra2	3.995e-7	22.34	glycine receptor, alpha 2 [Source:ZFIN;Acc:ZDB-GEN...	[more]
ENSPMAT00000002305.1	3.305e-6	21.12	pep scaffold:Pmarinus_7.0:GL478144:76380:93696:1 g...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO32790	6.619e-36	32.71	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26859	9.831e-20	36.50	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO40746	1.835e-10	23.58	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37555	2.160e-10	22.79	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO32053	6.970e-10	22.90	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrg1	4.660e-11	25.69	gamma-aminobutyric acid type A receptor gamma1 sub...	[more]
gabrg2	7.029e-11	25.90	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
gabrg2	8.994e-11	25.90	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
gabrg2	9.601e-11	25.90	gamma-aminobutyric acid type A receptor gamma2 sub...	[more]
GABRG3	1.818e-10	24.03	gamma-aminobutyric acid receptor subunit gamma-3 [...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000012532.1	0.000e+0	99.67	SMESG000012532.1	[more]
SMESG000012532.1	0.000e+0	99.30	SMESG000012532.1	[more]
SMESG000012532.1	0.000e+0	99.30	SMESG000012532.1	[more]
SMESG000008589.1	2.330e-172	46.79	SMESG000008589.1	[more]
SMESG000008589.1	1.447e-166	47.35	SMESG000008589.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30015290 ID=SMED30015290|Name=Neur_chan_LBD domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2595bp
GAACAAATTAGAGATAGCGTTAATCTGTGTTTGATTTTTTTTTGAATTCA
TAAAAAATAACTCTTAAAAAGATATATCCAGTGAACATTTTCTCCTGTCC
AGAACCACAAAGGGATACACAAAATTGATCATGTTGAGTCAATAGGAAAA
ACATTTTCTAACACTGGAAATTCGATTTTTTCAATCATTGTTTCAATTGA
TTAAAACATTTCCCGCGTTGTTTAAATTAACTGAAATTGTAAGCTGTATT
AATTGAAAAATTCGGCCGTGAATTGAATTGTTTTTTATTCGAACTTTATC
AAAACCAATATGTTCTCTCAAGTATAACAATATATATTTATATATATAAA
TATATATAAATATATAAATATTATAAAATATTCATGGATATTAAAATGAA
TTTCAACAAAATCCTCATTCAAGACATGGTTAACAAACGCGATTACAATC
AAGATACTTACCGAACAACGAACGAAGTATCCGATGATGATGACACTTCC
TGTTCGGATGAGTTTAACAATAGAAACGGAAGACCGAACTGTGAAAAGAC
TCATCCGATTGATGTCAATGTCGTTTCGAATGCATGCTCAAATCTGTTGA
AAAACTACCAACCGTTTGGTGACAACAACAATTTCATTTATGCCGATTCA
CAGATCTTTGATCATGTCGATCAGAATTACGGATCAGAAATCGGAAAGGA
CAGCGTCGACAAGTTGATATCGGCTTTAGAATTGTTGCGGATAAATATCG
ACCAAAATACAATGGTTTACGATCAAAAAACCAACCAAACCCGTTCTAGG
TTTCATGGACAGCGTTTGCATCATCATCATCGTCGAAATACGGCTGGCTA
TTCCGATGAATCTGAAGCTAAAAAAAACTTCGATGTTTTAAATCACGACG
AAAGAATGATGAAAAGAAAAGAAAAAGTTGTCGTAGAAGTTCGAGTTGTT
TTTCTGAAAATCGGAGAAATCGACACATTGAAAGAAATATATCATGCTGA
TGCCTTCATCCAGTCCAAATGGAGAGAATCAAAATTGGACAATAAACCTA
ATGACGAGCTCAAGGCAGTTGATTTGGATCGTTGTTGGAATCCTTTATTA
TTTATTGACAACATTCTAAACGAAACAAAAGATCAGTATTGGCTAACAGC
AGAACAAAATGAAAAAGGAGAAACTTATATTATAGAAAGAAGGAAACTAA
AAGGTGTATTTTTAGAAACCCTAGAACTTAATGACTTCCCATTAGATGTT
CAGGATCTAACTATAACCATTTCTTCAGAACGACCTGATTCTGAAATAGA
TATGGTTCCAGATACAGTAGAGCTCAGCGGAATCAATATACAGACATTTG
TAGACCAACAGGAATGGAAATTGCATGAACACGTAGAAGTTACAAAACGA
GTAGTCACTCAGGAATATACTAGCTCCAGTCGATGTCACCCATGTCTTTC
AGTAACATGTAGGGCTTCACGAAGACCTGGTTATTTTTACTGGAATGTAT
TTTTAGTTATGTTTTTCATTACTGGTTTGTCTTTTGCTACATTCGCAGTG
CCTACAGGACGAGCAGAAAATCGGCTGCAGTTATCCTTTACTCTATTCCT
TACTTCAGTGGCATTCAAGTTTGTGATAAATCAGTCATTGCCTCGAATTT
CATATCTTACATATATGGATAAATATGTGCTCATGTCATTGGCTATTTTA
TGCATTATTAGTATTTGGCATTCTGTTGTAATGTTTATCAAGCCGCCAAA
CATGGGTATCACAATAACCACAATAAAGCCAATCACAGTTCAGACACCAG
TTAACAGTGACAACAATACATCATACAAAAAACTTTTTGAACCTAACAAA
AATACTCTACTTAAAACAATATTACTCAAATCAAGGATGAACCCAAGTTT
TAACAAACGTTCAACCGACAAATCTAATAAACTTTTACTCACTGAAGCAA
AACACATTCCAATTGTTGCTAGATCAAAATCAACCGAGCTGCCTATTTCA
GAAGAAAAGAACCGATTGGCATTAGAACTGAGAATCACTGCAAAATTTCA
AAAAAAAGTAGAGCGAGATATTTTCATATCTTTTGTAATGCTCTATTTCT
TTGCTCACTTTATGTTTATACTTTGGCTCTATTTTGATGCAAGTAAGAGA
AGAAGAGAAATGATAGAAAAGGATCGCCAATATAAGGAATGGGTAAAGCG
TAATAAGGAATGGGTAGATAACCATAACCAGCAACATTCCCATGGTCACA
GAAATAGCAACATTTTAATGAATAGAGTGTAGATTCTATCCGTAAAGGTT
TAGTGATAAATCTATAAAACTAGTTCATTTTGCATGTGATCAAGAAATAG
AAATCAGATTTTATTCCTGTGTAACTATCAATTAAAATTACACTATAAAT
CATGTCGGTAATTCTATTCAAACCATTTAATTAAATAATAATTAAATCAA
TTGTTTAATTAAAACTATCTTTTTTCAATTTATACCCTCATTTATTGACA
ATTACTTTATTAGATATGATTTATAAATTTGACGTTTTTATTTTCTACTA
TGCTCTTCCTTGATTAACTATTTGTAGTTTAATATCCTTTATGTG

protein sequence of SMED30015290-orf-1

>SMED30015290-orf-1 ID=SMED30015290-orf-1|Name=SMED30015290-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=633bp
MDIKMNFNKILIQDMVNKRDYNQDTYRTTNEVSDDDDTSCSDEFNNRNGR
PNCEKTHPIDVNVVSNACSNLLKNYQPFGDNNNFIYADSQIFDHVDQNYG
SEIGKDSVDKLISALELLRINIDQNTMVYDQKTNQTRSRFHGQRLHHHHR
RNTAGYSDESEAKKNFDVLNHDERMMKRKEKVVVEVRVVFLKIGEIDTLK
EIYHADAFIQSKWRESKLDNKPNDELKAVDLDRCWNPLLFIDNILNETKD
QYWLTAEQNEKGETYIIERRKLKGVFLETLELNDFPLDVQDLTITISSER
PDSEIDMVPDTVELSGINIQTFVDQQEWKLHEHVEVTKRVVTQEYTSSSR
CHPCLSVTCRASRRPGYFYWNVFLVMFFITGLSFATFAVPTGRAENRLQL
SFTLFLTSVAFKFVINQSLPRISYLTYMDKYVLMSLAILCIISIWHSVVM
FIKPPNMGITITTIKPITVQTPVNSDNNTSYKKLFEPNKNTLLKTILLKS
RMNPSFNKRSTDKSNKLLLTEAKHIPIVARSKSTELPISEEKNRLALELR
ITAKFQKKVERDIFISFVMLYFFAHFMFILWLYFDASKRRREMIEKDRQY
KEWVKRNKEWVDNHNQQHSHGHRNSNILMNRV*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0004888	transmembrane signaling receptor activity
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0003117	parapharyngeal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036734	Neur_chan_lig-bd_sf
IPR006201	Neur_channel
IPR036719	Neuro-gated_channel_TM_sf
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **biological process**
Term	Definition
GO:0006810	transport
GO:0006811	ion transport
GO:0034220	ion transmembrane transport

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.58.390		coord: 365..471 e-value: 3.2E-20 score: 74.3
None	No IPR available	PANTHER	PTHR18945:SF768		coord: 170..471
None	No IPR available	CDD	cd18988	LGIC_ECD_bact	coord: 190..364 e-value: 1.17661E-12 score: 64.6214
None	No IPR available	CDD	cd19050	LGIC_TM_bact	coord: 367..452 e-value: 6.53743E-22 score: 89.1898
None	No IPR available	TMHMM	TMhelix		coord: 398..420
None	No IPR available	TMHMM	TMhelix		coord: 366..388
None	No IPR available	TMHMM	TMhelix		coord: 562..584
None	No IPR available	TMHMM	TMhelix		coord: 432..449
IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	GENE3D	G3DSA:2.70.170.10		coord: 173..362 e-value: 4.8E-19 score: 70.6
IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	SUPERFAMILY	SSF63712	Nicotinic receptor ligand binding domain-like	coord: 179..364
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 171..356 e-value: 5.8E-11 score: 42.2
IPR006201	Neurotransmitter-gated ion-channel	PANTHER	PTHR18945	NEUROTRANSMITTER GATED ION CHANNEL	coord: 170..471
IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	SUPERFAMILY	SSF90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 365..583

Main menu

Neur_chan_LBD domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

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