SMED30015216

Overview


Name	SMED30015216
Smed ID	SMED30015216
Length (bp)	3177

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30015216 (SMED30015216) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30015216 (SMED30015216) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30015216 (SMED30015216) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30015216 (SMED30015216) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30015216

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30015216	SMESG000054494.1	dd_Smed_v4_5907_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30015216	SMESG000054494.1	dd_Smed_v4_5907_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30015216	SMESG000054494.1	dd_Smed_v4_5907_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30015216	SMESG000054494.1	dd_Smed_v4_5907_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30015216	SMESG000054494.1	dd_Smed_v4_5907_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30015216 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.012516:7213..10485 -	15786

Homology

[Close]

BLAST of SMED30015216 vs. Planmine SMEST
Match: SMESG000054494.1 (SMESG000054494.1)

HSP 1 Score: 1313.9 bits (3399), Expect = 0.000e+0
Identity = 992/996 (99.60%), Postives = 994/996 (99.80%), Query Frame = 3

Query:   78 MEYDPAFPTXXXXXXXXXXXXVTEIPLPVSKKKNKRQAKLMKIPLPXXXXXXXXXXXXXTSNSPPQEPDTSWLLPTSTQGPLKFNIIKPNAIKPTDEDNSIFDDLDMKMEXXXXXXXXXXXXXXMTLPTGVIVKNADFVVNEPKTNTELFLPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPMMNMSYIIPQKLRSAQMISQPLVANPAVASLNQKKAQXXXXXXXXXXXXXXXXXXXDFTDSIIDQSLNEIDSQKKQERNNEIKTGEENEKSPKLINNESLSSELKIDKKQEISNKSFEVXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXGRLDRQPNVASHRQNSPRTIQKSNKTSKSKMYQKSKSRSQSHGXXXXXXXXXXXXXPYXXXXXXXXXXXXXXXXPHRGLGNRGRASPDRNKHXXXXXXXXXXXXXXPDTRQGGNSTNNYHXXXXXXXXXXXQRNHNQRSNSQKRDSWTCDSSEKVLNNRKKSTNCWAVESESGDEVTTVNSEICDKDTFKLIDINLINEVTKLNELSDEKIIVSSSNTAQNSLKPDKNEDTTVSSTVDETKPGYCLDNLNYTEIVEVDSIENEEMIKKSDLELKVEEDNGKTITKICKSRSVSQNNSTTRRKSCSSELDKNSKWERSRKIRVSSRSPQAKHXXXXXXXXXXXXXXXXXXXXXKDQEFKNRNPRQSRNSRTPNRYSRTLRNPNEDYNYKRNYSNFKPYRDRFSRSTSSNFKYSRNKPNVKKRCXXXXXXXXXXXXKTRRHEKQYNLAKKRNRSFSSVSENENXXXXXXXXXXXXXXXXXXXDESREVKNKKGMHKSMKFEENKYLKKVNRRNDSQESNEMKLXXXXXXXXXXXXXXXXFKRSKKINRKNEEFESQNLKNKKINCDLDDIDQLNDVKKAKTKTIRNNXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPASYQGIKKSKRKERVTSG 3065
            MEYDPAFPTEDNDDEIDHIIDVTEIPLPVSKKKNKRQAKLMKIPLPEEKSSESSKSVVETSNSPPQEPDTSWLLPTSTQGPLKFNIIKPNAIKPTDEDNSIFDDLDMKMEPSKP+KLLPKKSKPMTLPTGVIVKNADFVVNEPKTNTELFLPPKITTENNINSTNESINNNLSSINNQNLINNYPMMNMSYIIPQKLRSAQMISQPLVANPAVASLNQKKAQETTKTEPRKRSKSSSKSPKDFTDSIIDQSLNEIDSQKKQERNNEIKTGEENEKSPKLINNESLSSELKIDKKQEISNKSFEVRSSQKKSNSKSRSRSFSRDKNNLSENKNSKHRRSSSRNSKSGRLDRQPNVASHRQNSPRTIQKSNKTSKSKMYQKSKSRSQSHGKRRKSTSRNRNRSPYQNRNRKSDSRSRRSQSPHRGLGNRGRASPDRNKHRSPRSRSRNRRSISPDTRQGGNSTNNYHRSRSRKRSGSKQRNHNQRSNSQKRDSWTCDSSEKVLNNRKKSTNCWAVESESGDEVTTVNSEICDKDTFKLIDINLINEVTKLNELSDEKIIVSSSNTAQNSLKPDKNEDTTVSSTVDETKPGYCLDNLNYTEIVEVDSIENEEMIKKSDLELKVEEDNGKTITKI KSRSVSQNNSTTRRKSCSSELDKNSKWERSRKIRVSSRSPQAKHFKRKSPSNRRRSRSARSNQFSKDQEFKNRNPRQSRNSRTPNRYSRTLRNPNEDYNYKRNYSNFKPYRDRFSRSTSSNFKYSRNKPNVKKRCSSSDSEHIINSSKTRRHEKQYNLAKKRNRSFSSVSENENKKYVKSKETGKSKKESRTSDESREVKNKKGMHKSMKFEENKYLKKVNRRNDSQESNEMK SKISRSRKRSDSNDSNFKRSKKINRKNEEFESQNLKNKKINCDLDDIDQLNDVKKAKTKTIRNNS+SKSISLSRSLSVESQNFKRSKKSNKDKKIKKQKRSRSSSLNSEKIPASYQGIKKSKRKERVTSG
Sbjct:    1 MEYDPAFPTEDNDDEIDHIIDVTEIPLPVSKKKNKRQAKLMKIPLPEEKSSESSKSVVETSNSPPQEPDTSWLLPTSTQGPLKFNIIKPNAIKPTDEDNSIFDDLDMKMEPSKPIKLLPKKSKPMTLPTGVIVKNADFVVNEPKTNTELFLPPKITTENNINSTNESINNNLSSINNQNLINNYPMMNMSYIIPQKLRSAQMISQPLVANPAVASLNQKKAQETTKTEPRKRSKSSSKSPKDFTDSIIDQSLNEIDSQKKQERNNEIKTGEENEKSPKLINNESLSSELKIDKKQEISNKSFEVRSSQKKSNSKSRSRSFSRDKNNLSENKNSKHRRSSSRNSKSGRLDRQPNVASHRQNSPRTIQKSNKTSKSKMYQKSKSRSQSHGKRRKSTSRNRNRSPYQNRNRKSDSRSRRSQSPHRGLGNRGRASPDRNKHRSPRSRSRNRRSISPDTRQGGNSTNNYHRSRSRKRSGSKQRNHNQRSNSQKRDSWTCDSSEKVLNNRKKSTNCWAVESESGDEVTTVNSEICDKDTFKLIDINLINEVTKLNELSDEKIIVSSSNTAQNSLKPDKNEDTTVSSTVDETKPGYCLDNLNYTEIVEVDSIENEEMIKKSDLELKVEEDNGKTITKISKSRSVSQNNSTTRRKSCSSELDKNSKWERSRKIRVSSRSPQAKHFKRKSPSNRRRSRSARSNQFSKDQEFKNRNPRQSRNSRTPNRYSRTLRNPNEDYNYKRNYSNFKPYRDRFSRSTSSNFKYSRNKPNVKKRCSSSDSEHIINSSKTRRHEKQYNLAKKRNRSFSSVSENENKKYVKSKETGKSKKESRTSDESREVKNKKGMHKSMKFEENKYLKKVNRRNDSQESNEMKPSKISRSRKRSDSNDSNFKRSKKINRKNEEFESQNLKNKKINCDLDDIDQLNDVKKAKTKTIRNNSVSKSISLSRSLSVESQNFKRSKKSNKDKKIKKQKRSRSSSLNSEKIPASYQGIKKSKRKERVTSG 996

The following BLAST results are available for this feature:

BLAST of SMED30015216 vs. Ensembl Human
BLAST of SMED30015216 vs. Ensembl Celegans
BLAST of SMED30015216 vs. Ensembl Fly
BLAST of SMED30015216 vs. Ensembl Zebrafish
BLAST of SMED30015216 vs. Ensembl Xenopus
BLAST of SMED30015216 vs. Ensembl Mouse
BLAST of SMED30015216 vs. UniProt/SwissProt
BLAST of SMED30015216 vs. TrEMBL
BLAST of SMED30015216 vs. Ensembl Cavefish
BLAST of SMED30015216 vs. Ensembl Sea Lamprey
BLAST of SMED30015216 vs. Ensembl Yeast
BLAST of SMED30015216 vs. Ensembl Nematostella
BLAST of SMED30015216 vs. Ensembl Medaka
BLAST of SMED30015216 vs. Planmine SMEST

BLAST of SMED30015216 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30015216 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000054494.1	0.000e+0	99.60	SMESG000054494.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30015216 ID=SMED30015216|Name=SMED30015216|organism=Schmidtea mediterranea sexual|type=transcript|length=3177bp
TCATAATAATTTAATGTTTGTGCAGGTAAATAGAAAAATTCATAACAAAT
TTCATTAAATTTTTATATTAATTAAAAATGGAATACGACCCAGCTTTTCC
AACTGAAGACAATGATGATGAAATCGACCATATAATTGATGTAACTGAGA
TACCATTACCAGTTTCTAAGAAGAAAAATAAGCGTCAAGCAAAATTAATG
AAAATACCTTTACCAGAAGAAAAGTCATCCGAATCTTCAAAGTCTGTAGT
GGAAACTTCTAATTCACCACCACAGGAACCTGATACAAGTTGGTTACTAC
CAACAAGTACCCAAGGACCATTAAAATTTAATATAATAAAACCTAATGCT
ATTAAACCAACTGATGAAGATAATAGTATTTTCGATGACCTTGATATGAA
AATGGAGCCATCAAAGCCAGTTAAACTTCTTCCAAAGAAATCTAAACCAA
TGACTCTTCCTACAGGAGTGATTGTTAAAAATGCTGATTTTGTTGTGAAT
GAACCAAAAACAAATACCGAATTATTTCTCCCGCCGAAAATAACAACTGA
AAATAATATAAATTCAACCAACGAATCAATAAATAACAATTTATCTTCAA
TTAATAATCAGAATTTAATTAATAACTATCCAATGATGAATATGTCTTAT
ATTATCCCACAGAAGTTGCGATCGGCTCAAATGATTTCTCAACCACTAGT
TGCTAATCCGGCAGTCGCGTCACTTAATCAAAAAAAAGCACAGGAAACTA
CTAAGACTGAACCCCGGAAAAGGTCCAAAAGCTCTAGTAAATCTCCAAAA
GATTTTACAGATTCAATAATAGATCAATCATTAAATGAAATAGATTCTCA
AAAAAAGCAAGAAAGAAATAACGAAATCAAAACTGGCGAAGAAAATGAAA
AATCTCCCAAACTAATTAATAATGAAAGTCTTAGTTCTGAATTAAAAATT
GATAAAAAGCAAGAAATATCAAATAAGTCTTTCGAAGTTCGCAGTAGTCA
GAAAAAATCAAATAGCAAATCTCGAAGTCGTTCTTTTAGTCGAGATAAAA
ATAATTTATCAGAAAATAAAAATAGTAAGCATCGACGTTCTAGTAGCAGG
AATTCAAAATCAGGACGTTTAGACCGACAGCCAAATGTAGCAAGTCATAG
ACAAAATTCTCCTAGAACCATTCAAAAATCAAATAAGACATCAAAAAGTA
AAATGTATCAAAAGTCAAAAAGTAGATCACAAAGTCATGGAAAACGTCGA
AAATCAACCAGTCGAAATCGAAATCGATCTCCATATCAAAATCGCAATCG
TAAATCTGACAGTCGAAGTCGTCGATCACAAAGTCCACATCGTGGGTTAG
GTAATCGAGGTCGTGCTTCCCCTGACCGTAACAAGCATCGTTCACCAAGA
TCAAGAAGTAGAAATCGTCGGTCCATTTCACCTGATACACGCCAAGGTGG
AAATTCAACAAATAATTACCATCGATCTCGTAGTAGAAAAAGATCAGGAA
GTAAACAAAGAAATCACAACCAACGATCAAATAGTCAGAAACGAGACTCG
TGGACATGTGATAGTAGTGAAAAGGTTCTCAATAATCGTAAGAAGTCAAC
GAACTGCTGGGCCGTTGAGTCAGAATCTGGAGATGAGGTGACTACAGTAA
ATTCGGAAATCTGTGATAAAGACACCTTCAAATTAATTGATATAAATTTG
ATCAACGAAGTAACAAAACTGAATGAGTTGTCAGATGAAAAGATTATTGT
TTCATCATCAAATACTGCGCAAAATTCATTGAAACCGGACAAAAATGAAG
ATACAACCGTTTCATCGACTGTTGACGAGACGAAACCTGGTTATTGCTTA
GATAATCTAAATTACACGGAAATAGTAGAAGTAGATTCAATCGAAAATGA
GGAAATGATAAAAAAGTCTGACTTGGAATTAAAAGTCGAAGAGGACAATG
GCAAAACAATAACTAAAATTTGCAAGTCTAGGTCAGTTTCTCAAAATAAT
TCTACGACTCGTCGGAAATCATGTTCCTCTGAATTGGATAAAAATTCCAA
ATGGGAAAGATCTAGAAAAATTCGAGTGTCTTCTCGATCTCCGCAAGCTA
AGCATTTTAAGCGCAAATCACCGTCAAATCGTCGTCGGTCAAGAAGTGCT
AGATCAAACCAGTTTTCTAAAGACCAGGAATTTAAAAATCGAAATCCCCG
ACAGTCAAGAAATTCTAGAACTCCGAATCGATATTCTCGCACATTAAGAA
ATCCAAACGAAGACTATAATTATAAACGTAATTATTCCAATTTTAAGCCT
TATAGAGATAGGTTTAGTCGTTCAACTAGTTCTAACTTCAAATATTCAAG
AAACAAGCCTAATGTGAAAAAACGCTGCAGTAGTTCCGATTCAGAACATA
TTATTAATTCTTCTAAAACCAGACGACATGAAAAGCAATATAATTTAGCT
AAGAAACGAAATCGCTCTTTTAGTTCAGTTTCAGAAAATGAGAATAAAAA
ATATGTGAAATCAAAAGAAACTGGAAAATCCAAGAAAGAATCTAGAACTT
CGGACGAAAGTCGGGAAGTTAAAAATAAGAAAGGAATGCATAAGTCAATG
AAATTTGAAGAAAATAAATATCTGAAAAAAGTAAATCGAAGGAATGATTC
TCAAGAATCTAATGAAATGAAACTATCGAAAATATCCCGTTCAAGAAAGC
GTTCAGATAGTAATGACTCTAATTTTAAGAGATCTAAAAAAATTAACAGA
AAAAATGAAGAATTTGAAAGTCAAAATCTTAAAAACAAGAAGATTAATTG
TGATCTTGATGACATTGATCAATTGAATGACGTCAAAAAAGCAAAAACCA
AAACTATACGTAATAATTCTATGAGTAAATCTATTTCCTTGTCAAGATCA
TTATCAGTAGAAAGCCAAAATTTTAAGCGCTCTAAGAAATCCAATAAAGA
TAAAAAAATAAAGAAGCAAAAAAGATCAAGAAGTAGTTCTTTAAATTCAG
AAAAAATTCCAGCGAGTTATCAAGGAATTAAAAAAAGTAAAAGGAAAGAA
CGTGTGACATCGGGATCAGAATCATCTCTATCAATTAAAAAACATAAATC
GAAAAAGGTCCGAAAACTATAAATTTTGTACAGTTCGCATTGTTTCTTGA
TTTAGCAATTACATGTTTAATATTAAA

protein sequence of SMED30015216-orf-1

>SMED30015216-orf-1 ID=SMED30015216-orf-1|Name=SMED30015216-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1015bp
MEYDPAFPTEDNDDEIDHIIDVTEIPLPVSKKKNKRQAKLMKIPLPEEKS
SESSKSVVETSNSPPQEPDTSWLLPTSTQGPLKFNIIKPNAIKPTDEDNS
IFDDLDMKMEPSKPVKLLPKKSKPMTLPTGVIVKNADFVVNEPKTNTELF
LPPKITTENNINSTNESINNNLSSINNQNLINNYPMMNMSYIIPQKLRSA
QMISQPLVANPAVASLNQKKAQETTKTEPRKRSKSSSKSPKDFTDSIIDQ
SLNEIDSQKKQERNNEIKTGEENEKSPKLINNESLSSELKIDKKQEISNK
SFEVRSSQKKSNSKSRSRSFSRDKNNLSENKNSKHRRSSSRNSKSGRLDR
QPNVASHRQNSPRTIQKSNKTSKSKMYQKSKSRSQSHGKRRKSTSRNRNR
SPYQNRNRKSDSRSRRSQSPHRGLGNRGRASPDRNKHRSPRSRSRNRRSI
SPDTRQGGNSTNNYHRSRSRKRSGSKQRNHNQRSNSQKRDSWTCDSSEKV
LNNRKKSTNCWAVESESGDEVTTVNSEICDKDTFKLIDINLINEVTKLNE
LSDEKIIVSSSNTAQNSLKPDKNEDTTVSSTVDETKPGYCLDNLNYTEIV
EVDSIENEEMIKKSDLELKVEEDNGKTITKICKSRSVSQNNSTTRRKSCS
SELDKNSKWERSRKIRVSSRSPQAKHFKRKSPSNRRRSRSARSNQFSKDQ
EFKNRNPRQSRNSRTPNRYSRTLRNPNEDYNYKRNYSNFKPYRDRFSRST
SSNFKYSRNKPNVKKRCSSSDSEHIINSSKTRRHEKQYNLAKKRNRSFSS
VSENENKKYVKSKETGKSKKESRTSDESREVKNKKGMHKSMKFEENKYLK
KVNRRNDSQESNEMKLSKISRSRKRSDSNDSNFKRSKKINRKNEEFESQN
LKNKKINCDLDDIDQLNDVKKAKTKTIRNNSMSKSISLSRSLSVESQNFK
RSKKSNKDKKIKKQKRSRSSSLNSEKIPASYQGIKKSKRKERVTSGSESS
LSIKKHKSKKVRKL*

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 692..708
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 630..647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 404..418
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 926..949
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 764..785
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 630..907
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 798..907
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 709..734
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..496
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 953..967
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 668..687
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 648..667
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 742..758
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 920..1014

Main menu

SMED30015216

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 5

Owlery

blazegraph-runner