Splicing factor U2af subunit like protein

Overview
NameSplicing factor U2af subunit like protein
Smed IDSMED30015202
Length (bp)833
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Splicing factor U2af subunit like protein (SMED30015202) t-SNE clustered cells

Violin plots show distribution of expression levels for Splicing factor U2af subunit like protein (SMED30015202) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Splicing factor U2af subunit like protein (SMED30015202) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Splicing factor U2af subunit like protein (SMED30015202) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30015202

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30015202SMESG000002374.1 SmedASXL_009924SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30015202SMESG000002374.1 dd_Smed_v4_3092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30015202SMESG000002374.1 dd_Smed_v4_3092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30015202SMESG000002374.1 dd_Smed_v4_3092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30015202SMESG000002374.1 dd_Smed_v4_3092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30015202SMESG000002374.1 Contig38615newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30015202SMESG000002374.1 Contig38615uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Match: U2AF1 (U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:HGNC:12453])

HSP 1 Score: 285.804 bits (730), Expect = 6.487e-97
Identity = 128/185 (69.19%), Postives = 155/185 (83.78%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+L++N+Y  P+N A T DGSH  + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Match: U2AF1L5 (U2 small nuclear RNA auxiliary factor 1 like 5 [Source:HGNC Symbol;Acc:HGNC:51830])

HSP 1 Score: 285.804 bits (730), Expect = 6.487e-97
Identity = 128/185 (69.19%), Postives = 155/185 (83.78%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+L++N+Y  P+N A T DGSH  + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Match: U2AF1 (U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:HGNC:12453])

HSP 1 Score: 275.404 bits (703), Expect = 8.664e-93
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Match: U2AF1L5 (U2 small nuclear RNA auxiliary factor 1 like 5 [Source:HGNC Symbol;Acc:HGNC:51830])

HSP 1 Score: 275.404 bits (703), Expect = 8.664e-93
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Match: U2AF1L4 (U2 small nuclear RNA auxiliary factor 1 like 4 [Source:HGNC Symbol;Acc:HGNC:23020])

HSP 1 Score: 269.626 bits (688), Expect = 8.814e-91
Identity = 118/185 (63.78%), Postives = 149/185 (80.54%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIG CRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREED E+A+ +L+NRWF  + +  E SPVTDFR++CC QYE+  C+R G CNFMH++ +S+  + QL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Celegans
Match: uaf-2 (U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc:A0A0K3AXF6])

HSP 1 Score: 238.424 bits (607), Expect = 4.505e-78
Identity = 113/194 (58.25%), Postives = 145/194 (74.74%), Query Frame = 2 
Query:   62 AEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG-SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRK 640
            AEYLASI+GTEKDKVNCSF++K GACRHGD CSR H+ PTFS TV+LKN Y  P       D    +    +  Q+ FD+FY+E+F+E+  KYGE+EE+ VC+N+GEH+VGNVYV F +EEDAEKA NDLNNRWF  +PI+AE  PVTDFR++ C Q+E+ TCS+ G CNFMH+K +S E  ++L  Y R+ R+
Sbjct:   10 AEYLASIYGTEKDKVNCSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQADAFDKVGKRNDQEQRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAELGDRL--YGRRGRR 201
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Celegans
Match: uaf-2 (U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc:A0A0K3AXF6])

HSP 1 Score: 238.424 bits (607), Expect = 4.505e-78
Identity = 113/194 (58.25%), Postives = 145/194 (74.74%), Query Frame = 2 
Query:   62 AEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG-SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRK 640
            AEYLASI+GTEKDKVNCSF++K GACRHGD CSR H+ PTFS TV+LKN Y  P       D    +    +  Q+ FD+FY+E+F+E+  KYGE+EE+ VC+N+GEH+VGNVYV F +EEDAEKA NDLNNRWF  +PI+AE  PVTDFR++ C Q+E+ TCS+ G CNFMH+K +S E  ++L  Y R+ R+
Sbjct:   10 AEYLASIYGTEKDKVNCSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNPVVDVRQADAFDKVGKRNDQEQRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAELGDRL--YGRRGRR 201
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Fly
Match: U2af38 (gene:FBgn0017457 transcript:FBtr0333408)

HSP 1 Score: 291.582 bits (745), Expect = 4.118e-99
Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF--LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYL 625
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQTVLL+NLY+ P+N A + DGSH+   + +E+ Q+ +D F++++F+E  DKYGEIEEM VCDNLG+HLVGNVY+ FR E DAEKA NDLNNRWFG RP+++E SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SRE    LR YL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE----LRRYL 187
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Fly
Match: U2af38 (gene:FBgn0017457 transcript:FBtr0078133)

HSP 1 Score: 291.582 bits (745), Expect = 4.118e-99
Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF--LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYL 625
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQTVLL+NLY+ P+N A + DGSH+   + +E+ Q+ +D F++++F+E  DKYGEIEEM VCDNLG+HLVGNVY+ FR E DAEKA NDLNNRWFG RP+++E SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SRE    LR YL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE----LRRYL 187
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Fly
Match: CG3294 (gene:FBgn0031628 transcript:FBtr0077381)

HSP 1 Score: 86.2705 bits (212), Expect = 7.515e-19
Identity = 45/186 (24.19%), Postives = 87/186 (46.77%), Query Frame = 2 
Query:   41 DPKF*DMAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITP------ENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +P+      +L  +  T  ++  C F+ +   CR+G  C+  H +P   + +L+++ +          +        H+ L E+D +  +DEF+ ++  E+  K+G I   R   N  EHL G+V+V +  E  A +A  +L  R++  + +  EFS +  +R A C       C +   C ++H+
Sbjct:  147 NPRIEKPPSHLLRVMETHPEERACEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQKRCTHKEYASAEEHLELTEQDLRHDYDEFFNDVVEELR-KFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNDCGYLHL 331
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Fly
Match: CG3294 (gene:FBgn0031628 transcript:FBtr0077382)

HSP 1 Score: 78.5666 bits (192), Expect = 1.375e-16
Identity = 42/168 (25.00%), Postives = 80/168 (47.62%), Query Frame = 2 
Query:   41 DPKF*DMAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITP------ENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCA 526
            +P+      +L  +  T  ++  C F+ +   CR+G  C+  H +P   + +L+++ +          +        H+ L E+D +  +DEF+ ++  E+  K+G I   R   N  EHL G+V+V +  E  A +A  +L  R++  + +  EFS +  +R A C 
Sbjct:  147 NPRIEKPPSHLLRVMETHPEERACEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQKRCTHKEYASAEEHLELTEQDLRHDYDEFFNDVVEELR-KFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCG 313
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Zebrafish
Match: u2af1 (U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1])

HSP 1 Score: 271.937 bits (694), Expect = 1.617e-91
Identity = 124/185 (67.03%), Postives = 152/185 (82.16%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N A + DG +  + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ +LNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQSADGLNA-VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 184
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Zebrafish
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 124.405 bits (311), Expect = 3.759e-32
Identity = 62/170 (36.47%), Postives = 96/170 (56.47%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTEKDK NC F+ K GACR GD CSR H+ P  S T++++ ++++        D     + +   EE+  ++F +FY++   E  +  G + + +V  N   HL GNVYV +  EE  ++A    N RW+  R +  EFSPVT ++ A C  ++   C +  HCNF+HV
Sbjct:   24 YGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKNA-GRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHV 192
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Zebrafish
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 124.79 bits (312), Expect = 8.116e-32
Identity = 62/170 (36.47%), Postives = 96/170 (56.47%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTEKDK NC F+ K GACR GD CSR H+ P  S T++++ ++++        D     + +   EE+  ++F +FY++   E  +  G + + +V  N   HL GNVYV +  EE  ++A    N RW+  R +  EFSPVT ++ A C  ++   C +  HCNF+HV
Sbjct:  176 YGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKN-AGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHV 344
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Zebrafish
Match: CR450764.13 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:100005490])

HSP 1 Score: 107.071 bits (266), Expect = 1.139e-27
Identity = 57/174 (32.76%), Postives = 95/174 (54.60%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGD----GSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLS 592
            +GTEKDK NC F+ K GACR GD CSR H+ P  S T++++ ++++        D     + +   EE+  ++F +FY++   E  +  G + + +V  N   HL GNVYV +  EE  ++A    N RW+  R +  EFSPVT ++ A C +  ++  + A    +  ++ +S
Sbjct:   24 YGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDTDASLEYSEEELHQQFLDFYEDALPEFKNA-GRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGKENISRENTATSFMYSEIQTMS 196
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Match: u2af1 (U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:733934])

HSP 1 Score: 196.052 bits (497), Expect = 6.584e-62
Identity = 90/159 (56.60%), Postives = 118/159 (74.21%), Query Frame = 2 
Query:  167 HNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKH 643
            H  P   QT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L  Y R+++KH
Sbjct:   24 HPLPLSFQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVKDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL--YGRRRKKH 180
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Match: u2af1 (U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:733934])

HSP 1 Score: 191.815 bits (486), Expect = 4.431e-60
Identity = 86/149 (57.72%), Postives = 111/149 (74.50%), Query Frame = 2 
Query:  167 HNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            H  P   QT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:   24 HPLPLSFQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVKDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 172
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 139.813 bits (351), Expect = 1.580e-38
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKK 586
            +GTEKD+ NC FY K GACR G+ CSR HN P+ SQT+L++++++T        D     + +   EE+  ++F EFY ++  E  +  G++ + +V  N   HL GNVYV ++ EE+  KA    N RW+  R +  EFSPVT ++ A C  +E   C R  HCNF+HV K
Sbjct:  139 YGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNA-GKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHVFK 309
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 139.813 bits (351), Expect = 3.049e-38
Identity = 69/170 (40.59%), Postives = 101/170 (59.41%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTEKD+ NC FY K GACR G+ CSR HN P+ SQT+L++++++T        D     + +   EE+  ++F EFY ++  E  +  G++ + +V  N   HL GNVYV ++ EE+  KA    N RW+  R +  EFSPVT ++ A C  +E   C R  HCNF+HV
Sbjct:  139 YGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNA-GKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHV 307
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Match: scgn (secretagogin, EF-hand calcium binding protein [Source:Xenbase;Acc:XB-GENE-988344])

HSP 1 Score: 139.813 bits (351), Expect = 3.072e-38
Identity = 69/170 (40.59%), Postives = 101/170 (59.41%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTEKD+ NC FY K GACR G+ CSR HN P+ SQT+L++++++T        D     + +   EE+  ++F EFY ++  E  +  G++ + +V  N   HL GNVYV ++ EE+  KA    N RW+  R +  EFSPVT ++ A C  +E   C R  HCNF+HV
Sbjct:  139 YGTEKDRANCPFYLKTGACRFGERCSRKHNYPSSSQTLLIRSMFVTFGMEQCRRDDYDTDASLEYGEEEIYQQFLEFYADVVPEFKNA-GKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHV 307
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Match: U2af1 (U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Source:MGI Symbol;Acc:MGI:98884])

HSP 1 Score: 285.804 bits (730), Expect = 4.306e-97
Identity = 128/185 (69.19%), Postives = 155/185 (83.78%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+L++N+Y  P+N A T DGSH  + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Match: Gm49396 (predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6121629])

HSP 1 Score: 278.1 bits (710), Expect = 3.091e-94
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR    QL  Y R  R  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQL--YGRGPRHRS 194
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Match: Gm49396 (predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6121629])

HSP 1 Score: 278.1 bits (710), Expect = 3.091e-94
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR    QL  Y R  R  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQL--YGRGPRHRS 194
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Match: U2af1l4 (U2 small nuclear RNA auxiliary factor 1-like 4 [Source:MGI Symbol;Acc:MGI:2678374])

HSP 1 Score: 278.1 bits (710), Expect = 3.091e-94
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR    QL  Y R  R  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQL--YGRGPRHRS 194
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Match: U2af1 (U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Source:MGI Symbol;Acc:MGI:98884])

HSP 1 Score: 275.404 bits (703), Expect = 5.752e-93
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Match: sp|Q94535|U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af38 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 4.128e-98
Identity = 133/191 (69.63%), Postives = 160/191 (83.77%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF--LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYL 625
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQTVLL+NLY+ P+N A + DGSH+   + +E+ Q+ +D F++++F+E  DKYGEIEEM VCDNLG+HLVGNVY+ FR E DAEKA NDLNNRWFG RP+++E SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SRE    LR YL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE----LRRYL 187
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Match: sp|Q7TP17|U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus OX=10116 GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.162e-93
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR    QL  Y R  R  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQL--YGRGPRHRS 194
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Match: sp|Q8BGJ9|U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus OX=10090 GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.162e-93
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR    QL  Y R  R  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQL--YGRGPRHRS 194
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Match: sp|Q3T127|U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.858e-93
Identity = 123/185 (66.49%), Postives = 152/185 (82.16%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT++L NLY  P+N A T DGSH  + + + Q+ +D F++E+F E+ +KYGEIEEM VCDNLG+HLVGNVYV FRREEDAE+A+ +LNNRWF  + + AE SPVTDFR++CC QYE+  C+R G CNFMH++ +SR+   QL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQL 185
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Match: sp|A1A4K8|U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.762e-92
Identity = 124/185 (67.03%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N + + DG    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
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BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Match: A0A0B6Y903 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF17572 PE=4 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 8.445e-100
Identity = 137/201 (68.16%), Postives = 165/201 (82.09%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYES 661
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HN+PTFSQT+LL+NLY+ P+N ALT DGSHI L +  AQ+++D+F++EIF+E+ DKYGEIEEM VCDNLG+HLVGNVYV F +EEDAE+A+ +LNNRWF +RPI  E SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   QL  Y RK  K   +  S
Sbjct:    3 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNRPTFSQTILLQNLYLNPQNAALTADGSHIMLDDVQAQQEYDDFFEEIFVELEDKYGEIEEMNVCDNLGDHLVGNVYVRFHKEEDAERAVGELNNRWFNQRPIHCELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRQL--YGRKGHKKGGRSRS 201
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BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Match: A0A4D5RWR4 (Putative u2 snrnp splicing factor small subunit (Fragment) OS=Ixodes scapularis OX=6945 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.636e-99
Identity = 140/198 (70.71%), Postives = 165/198 (83.33%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF-LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSS 649
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQTVLL+NLY  P+N A T DGSH+  + EE+ Q+ FD F++++F+E+ DKYGEIEEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF   PI++E SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SRE   +L  Y RK+RK  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYHNPQNSAQTADGSHLANMTEEEMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVADLNNRWFAGHPIYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRREL--YGRKRRKEVS 196
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BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Match: A0A433U683 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_002917 PE=4 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 3.810e-99
Identity = 134/185 (72.43%), Postives = 159/185 (85.95%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HN+PTFSQT+LL+NLY+ P+N ALT DGSHI + +  AQ+++DEF++EIF+E+ DKYGEIEEM VCDNLG+HLVGNVYV F REEDAEKA+ DLNNRWF +RPI  E SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNRPTFSQTILLQNLYLNPQNAALTADGSHIMMDDVQAQQEYDEFFEEIFVELEDKYGEIEEMNVCDNLGDHLVGNVYVRFHREEDAEKAVADLNNRWFNQRPIHCELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Match: A0A0C9RMN3 (U2af38_0 protein (Fragment) OS=Fopius arisanus OX=64838 GN=U2af38_0 PE=4 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.058e-99
Identity = 136/196 (69.39%), Postives = 165/196 (84.18%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF--LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRK 640
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQT LL+NLY+ P+N A + DGSH+   + +E+ Q+ +D F++++F+E  DKYGEIEEM VCDNLG+HLVGNVY+ FRREEDAEKA+NDLNNRWFG RP++AE SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SRE    LR YL  ++K
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTCLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE----LRRYLYSRKK 192
[Close]
BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Match: K7IQM5 (Uncharacterized protein OS=Nasonia vitripennis OX=7425 GN=100113925 PE=4 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 6.443e-99
Identity = 137/203 (67.49%), Postives = 167/203 (82.27%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIF--LCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYES 661
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSRIHNKPTFSQT LL+NLY+ P+N A + DGSH+   + +E+ Q+ +D F++++F+E  DKYGEIEEM VCDNLG+HLVGNVY+ FRREEDAEKA+NDLNNRWFG RP++AE SPVTDFR+ACC QYE+  C+R+G CNFMH+K +SR+    LR YL  ++K   K  S
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTCLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRD----LRRYLYSRKKGGGKGRS 199
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Cavefish
Match: u2af1 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:103046898])

HSP 1 Score: 271.937 bits (694), Expect = 8.782e-92
Identity = 124/185 (67.03%), Postives = 152/185 (82.16%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+ L N+Y  P+N A + DG +  + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ +LNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQSADGLNA-VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVLNLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 184
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Cavefish
Match: zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:103023654])

HSP 1 Score: 129.413 bits (324), Expect = 1.254e-33
Identity = 61/170 (35.88%), Postives = 101/170 (59.41%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDG----SHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTEKD+ NC F+ K G+CR GD CSR H+ P  S T++++N+++T     L  D     + +   E++  ++F +FY+++ +E  +  G++ + +V  N   HL GNVYV +  E+  ++A    N RW+  R +  EFSPVT ++ A C  ++   C +  HCNF+HV
Sbjct:  193 YGTEKDRANCPFFLKTGSCRFGDRCSRKHDHPLTSSTLMVRNMFVTFGMEQLKRDDYDTDASLEYSEDEIFQQFLDFYEDVLLEFRNA-GKVVQFKVSCNFEPHLRGNVYVQYETEDQCKEAFMMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRQKCPKGKHCNFLHV 361
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Sea Lamprey
Match: zrsr2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495])

HSP 1 Score: 129.413 bits (324), Expect = 8.407e-35
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYIT-PENMALTGD---GSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTE+D+ +C F+ K GACR GD CSR+H +P+ S T+LL++++     + A   D    + + L ++D +++F +FY++   E+  + G + + +V  N   HL GNVYV +  EE+A +A    N RW+  R I  EF PV+ ++ A C  Y+   C +   CNF+HV
Sbjct:  153 YGTERDRAHCPFFLKTGACRFGDRCSRLHVRPSRSATLLLRSMFAPFGLDQARCDDYDSDAGLELGDDDLRRQFRDFYRDALPELR-RPGRVRQFKVSCNFEPHLRGNVYVQYETEEEAMQAFQMFNGRWYAGRQINCEFCPVSRWKSAICGLYDRRRCPKGKSCNFLHV 321
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Nematostella
Match: EDO38373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD33])

HSP 1 Score: 279.256 bits (713), Expect = 1.955e-95
Identity = 122/185 (65.95%), Postives = 155/185 (83.78%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+LL+N+Y  P++ A   DG+   + + +AQ+ +D F++++F+E+ +KYGEIEEM VCDNLG+HLVGNVYV FR EEDAEKA+NDLNNRW+  +PI+AE SPVTDFR+ACC QYE+  C+R G CNFMH++ +SR+   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILLQNMYQNPQSAAQVADGTSNAISDVEAQEHYDRFFEDVFLELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFREACCRQYEMGECTRGGFCNFMHLRPISRDVRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Nematostella
Match: EDO39379 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAD7])

HSP 1 Score: 64.6994 bits (156), Expect = 5.549e-12
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:  287 KFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQY 532
            +++EF+ ++  E  +K G++ + + C N   HL GNVYV F+ EE   +A    N RW+ ++ +  EFSPVT ++ A C ++
Sbjct:   14 RYEEFFNDVLPEF-EKAGKVVQFKACCNYEPHLRGNVYVQFKDEESCARAFAAFNGRWYAQKQLSCEFSPVTRWKSAICDRF 94
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Nematostella
Match: EDO39380 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAD9])

HSP 1 Score: 60.077 bits (144), Expect = 1.771e-10
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLY 214
            FGTE+D VNC+FY K G+CR G+ CSR H +P  S T+L+  +Y
Sbjct:  189 FGTEQDTVNCAFYLKTGSCRFGERCSRQHPRPPSSVTLLIPGMY 232
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Nematostella
Match: EDO29139 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4H3])

HSP 1 Score: 52.7582 bits (125), Expect = 2.583e-8
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:   98 DKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLY 214
            D VNC+FY K G+CR G+ CSR H +P  S T+L+  +Y
Sbjct:  162 DTVNCAFYLKTGSCRFGERCSRQHPRPPSSVTLLIPGMY 200
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Medaka
Match: ENSORLT00000011113.2 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101158751])

HSP 1 Score: 281.567 bits (719), Expect = 5.220e-96
Identity = 126/185 (68.11%), Postives = 153/185 (82.70%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+L++N+Y  P+N A T D S   + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Medaka
Match: ENSORLT00000007778.2 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101158751])

HSP 1 Score: 281.567 bits (719), Expect = 1.407e-95
Identity = 126/185 (68.11%), Postives = 153/185 (82.70%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQT+L++N+Y  P+N A T D S   + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FRREEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE+  C+R G CNFMH+K +SRE   +L
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQTADASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Medaka
Match: u2af1 (splicing factor U2AF 35 kDa subunit [Source:NCBI gene;Acc:101171784])

HSP 1 Score: 274.248 bits (700), Expect = 5.562e-92
Identity = 123/185 (66.49%), Postives = 150/185 (81.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQL 613
            MAEYLASIFGTEKDKVNCSFY+KIGACRHGD CSR+HNKPTFSQTV + N+Y  P+N A + +G    + + + Q+ +DEF++E+F E+ +KYGE+EEM VCDNLG+HLVGNVYV FR+EEDAEKA+ DLNNRWF  +PI AE SPVTDFR+ACC QYE   C+R G CNFMH+K +SR+   QL
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTVAMLNIYRNPQNTAQSMEGVTSNVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRKEEDAEKAMLDLNNRWFNGQPIHAELSPVTDFREACCHQYETGGCTRGGFCNFMHLKPISRDLRRQL 185
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Medaka
Match: zrsr2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 [Source:NCBI gene;Acc:101174087])

HSP 1 Score: 129.798 bits (325), Expect = 8.712e-34
Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLC----EEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHV 580
            +GTE+D  NC F+ K GACR G+ CSR H  PT S T++++ +++T     L  D   +  C    EED  + F EFY ++  E     G++ + +VC N   HL GNVY+ F  ++  ++A+   N RW+  R +  E SPVT +++A C  ++   C +  HCNF+HV
Sbjct:  167 YGTERDVANCPFFLKTGACRFGERCSRKHVYPTSSPTLMIRGMFMTFGMEQLRRDDYDMDACLEHSEEDLHESFLEFYHDVLPEFK-SVGKVVQFKVCCNYEPHLKGNVYIQFETDDQCKEALMKFNGRWYAGRQLQCEISPVTRWKNAICGLFDRRKCPKGKHCNFLHV 335
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Match: SMESG000002374.1 (SMESG000002374.1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.439e-154
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYESXXXXXXXXXXXXXXXXXXXXXYGNSRRNRY 751
            MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYESRDRRRS+DRRRGDNRRDDHRDYGNSRRNRY
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYESRDRRRSVDRRRGDNRRDDHRDYGNSRRNRY 231
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Match: SMESG000034350.1 (SMESG000034350.1)

HSP 1 Score: 300.827 bits (769), Expect = 1.818e-103
Identity = 135/191 (70.68%), Postives = 162/191 (84.82%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRK 631
            MAEYLASIFGTEKDKVNCSFY+KIGACRHG+NCSR+HNKPTFSQT+LL+NLYI P+N A T DGSHI + E +AQ+ FD+F++E+FIE  ++YGEIEEM VCDNLG+HLVGNVY+ FRREEDAEKA+ +LNNRWFG RP+ AE SPVTDFR+ACC QYE   C+R G CNFMH+K +SRE   +L +  +K
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGENCSRLHNKPTFSQTILLQNLYIAPQNTAQTADGSHISMSEVEAQQVFDDFFEEVFIECEERYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVTELNNRWFGGRPVHAELSPVTDFREACCTQYENGECTRGGFCNFMHLKPISRELRRKLYARSKK 191
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Match: SMESG000034350.1 (SMESG000034350.1)

HSP 1 Score: 294.664 bits (753), Expect = 6.267e-101
Identity = 134/195 (68.72%), Postives = 162/195 (83.08%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSH----IFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRK 631
            MAEYLASIFGTEKDKVNCSFY+KIGACRHG+NCSR+HNKPTFSQT+LL+NLYI P+N A T DGSH    + + E +AQ+ FD+F++E+FIE  ++YGEIEEM VCDNLG+HLVGNVY+ FRREEDAEKA+ +LNNRWFG RP+ AE SPVTDFR+ACC QYE   C+R G CNFMH+K +SRE   +L +  +K
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGENCSRLHNKPTFSQTILLQNLYIAPQNTAQTADGSHSNFPVSMSEVEAQQVFDDFFEEVFIECEERYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVTELNNRWFGGRPVHAELSPVTDFREACCTQYENGECTRGGFCNFMHLKPISRELRRKLYARSKK 195
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Match: SMESG000002360.1 (SMESG000002360.1)

HSP 1 Score: 170.244 bits (430), Expect = 8.308e-54
Identity = 76/100 (76.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:   59 MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMR 358
            MAEYLASIFGTEKDKVNC+F+YKIGACRHG++CSR+HN+PTFSQTVLLKNLY+T EN A+T   SH ++ E++ QKKFDEFY+E+F+E+NDKYGEIEEMR
Sbjct:    1 MAEYLASIFGTEKDKVNCTFFYKIGACRHGESCSRLHNQPTFSQTVLLKNLYVTTENTAMTSSMSH-YISEKETQKKFDEFYREVFVEVNDKYGEIEEMR 99
[Close]
BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Match: SMESG000036695.1 (SMESG000036695.1)

HSP 1 Score: 114.39 bits (285), Expect = 3.454e-29
Identity = 64/191 (33.51%), Postives = 97/191 (50.79%), Query Frame = 2 
Query:   83 FGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKNLYIT--PENMALTGDGSHIFLCEE-DAQKKFDEFYQEIFIEINDKYGEIEEMRVCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDFRDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHS 646
            F  +  K  C F+ K G CR    CSR+H  P  S T++  N++ +   E +   GD      C+E +   +++EFY +I  E +  +G +  +R C N   HL GNVYV +R   DA  A + LN R++    +FA F  +  +R++ C  Y    C + G CNFMHV     E+   L  +LR+ R H+
Sbjct:  114 FLDQSKKEICHFFRKTGVCRFDLRCSRLHEMPLVSDTIVFMNMFTSNYMEMLMAGGDPDFSLECDETELINEYEEFYTDIETEFSS-FGRVLAIRTCRNAMRHLRGNVYVQYRNINDAVYAYSQLNGRYYAGTRLFARFVTLDSWRESICGLYFRGKCPKGGICNFMHVLLNKGESLRDLHHFLRQSRSHT 303
The following BLAST results are available for this feature:
BLAST of Splicing factor U2af subunit like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
U2AF16.487e-9769.19U2 small nuclear RNA auxiliary factor 1 [Source:HG... [more]
U2AF1L56.487e-9769.19U2 small nuclear RNA auxiliary factor 1 like 5 [So... [more]
U2AF18.664e-9367.03U2 small nuclear RNA auxiliary factor 1 [Source:HG... [more]
U2AF1L58.664e-9367.03U2 small nuclear RNA auxiliary factor 1 like 5 [So... [more]
U2AF1L48.814e-9163.78U2 small nuclear RNA auxiliary factor 1 like 4 [So... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
uaf-24.505e-7858.25U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc... [more]
uaf-24.505e-7858.25U2AF splicing factor [Source:UniProtKB/TrEMBL;Acc... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
U2af384.118e-9969.63gene:FBgn0017457 transcript:FBtr0333408[more]
U2af384.118e-9969.63gene:FBgn0017457 transcript:FBtr0078133[more]
CG32947.515e-1924.19gene:FBgn0031628 transcript:FBtr0077381[more]
CG32941.375e-1625.00gene:FBgn0031628 transcript:FBtr0077382[more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
u2af11.617e-9167.03U2 small nuclear RNA auxiliary factor 1 [Source:ZF... [more]
zrsr23.759e-3236.47zinc finger (CCCH type), RNA-binding motif and ser... [more]
zrsr28.116e-3236.47zinc finger (CCCH type), RNA-binding motif and ser... [more]
CR450764.131.139e-2732.76zinc finger (CCCH type), RNA-binding motif and ser... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
u2af16.584e-6256.60U2 small nuclear RNA auxiliary factor 1 [Source:NC... [more]
u2af14.431e-6057.72U2 small nuclear RNA auxiliary factor 1 [Source:NC... [more]
scgn1.580e-3840.70secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn3.049e-3840.59secretagogin, EF-hand calcium binding protein [Sou... [more]
scgn3.072e-3840.59secretagogin, EF-hand calcium binding protein [Sou... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
U2af14.306e-9769.19U2 small nuclear ribonucleoprotein auxiliary facto... [more]
Gm493963.091e-9464.80predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6... [more]
Gm493963.091e-9464.80predicted gene, 49396 [Source:MGI Symbol;Acc:MGI:6... [more]
U2af1l43.091e-9464.80U2 small nuclear RNA auxiliary factor 1-like 4 [So... [more]
U2af15.752e-9367.03U2 small nuclear ribonucleoprotein auxiliary facto... [more]
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BLAST of Splicing factor U2af subunit like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q94535|U2AF1_DROME4.128e-9869.63Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
sp|Q7TP17|U2AF4_RAT2.162e-9364.80Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
sp|Q8BGJ9|U2AF4_MOUSE2.162e-9364.80Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
sp|Q3T127|U2AF4_BOVIN3.858e-9366.49Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]
sp|A1A4K8|U2AF1_BOVIN3.762e-9267.03Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
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BLAST of Splicing factor U2af subunit like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0B6Y9038.445e-10068.16Uncharacterized protein (Fragment) OS=Arion vulgar... [more]
A0A4D5RWR42.636e-9970.71Putative u2 snrnp splicing factor small subunit (F... [more]
A0A433U6833.810e-9972.43Uncharacterized protein OS=Elysia chlorotica OX=18... [more]
A0A0C9RMN35.058e-9969.39U2af38_0 protein (Fragment) OS=Fopius arisanus OX=... [more]
K7IQM56.443e-9967.49Uncharacterized protein OS=Nasonia vitripennis OX=... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
u2af18.782e-9267.03splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
zrsr21.254e-3335.88zinc finger CCCH-type, RNA binding motif and serin... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
zrsr28.407e-3536.47zinc finger (CCCH type), RNA-binding motif and ser... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO383731.955e-9565.95Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393795.549e-1235.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO393801.771e-1054.55Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO291392.583e-851.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ENSORLT00000011113.25.220e-9668.11splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
ENSORLT00000007778.21.407e-9568.11splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
u2af15.562e-9266.49splicing factor U2AF 35 kDa subunit [Source:NCBI g... [more]
zrsr28.712e-3437.06zinc finger CCCH-type, RNA binding motif and serin... [more]
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BLAST of Splicing factor U2af subunit like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000002374.11.439e-15499.57SMESG000002374.1[more]
SMESG000034350.11.818e-10370.68SMESG000034350.1[more]
SMESG000034350.16.267e-10168.72SMESG000034350.1[more]
SMESG000002360.18.308e-5476.00SMESG000002360.1[more]
SMESG000036695.13.454e-2933.51SMESG000036695.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015202 ID=SMED30015202|Name=Splicing factor U2af subunit like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=833bp
TTATCTAGGTAAATTTGACGTTAATTTAATTGGATAAAAAGATCCAAAAT
TTTAAGACATGGCTGAATATCTTGCATCAATTTTTGGAACAGAAAAAGAT
AAAGTTAATTGTTCTTTTTATTACAAAATTGGAGCATGTAGGCACGGAGA
TAATTGTTCAAGAATTCACAATAAACCTACGTTTAGCCAGACAGTTTTAC
TAAAAAACCTATATATTACTCCTGAAAACATGGCTTTGACCGGTGATGGA
TCACATATTTTTCTATGCGAAGAAGATGCTCAAAAGAAATTTGATGAATT
TTACCAAGAAATCTTCATTGAAATTAATGATAAATATGGGGAGATAGAAG
AAATGAGAGTTTGCGATAATCTTGGTGAACATCTTGTTGGAAACGTTTAT
GTAATGTTTCGCCGAGAAGAAGATGCGGAGAAAGCAATTAATGACTTGAA
TAATCGTTGGTTTGGGAAAAGGCCCATTTTCGCAGAGTTTTCTCCTGTTA
CTGACTTTCGGGATGCATGCTGTGCTCAATATGAGTTGAATACCTGTTCT
CGAGCTGGTCACTGCAACTTTATGCACGTGAAAAAGTTATCCCGTGAAGC
AGAAAACCAATTGCGATCGTATTTAAGAAAACAGAGAAAACATTCATCAA
AGTACGAATCAAGGGATCGCCGAAGATCAATTGATCGTCGGCGTGGTGAT
AACCGGCGTGATGATCATCGCGATTATGGTAATTCTCGCAGGAATCGTTA
TTAAATGTAGGATATTTGAATGATTCATACTGGTCTGATGTAGAAATGAT
GTTTAATTTTTAACTTAATAAATTATGAGATTA
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protein sequence of SMED30015202-orf-1

>SMED30015202-orf-1 ID=SMED30015202-orf-1|Name=SMED30015202-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=232bp
MAEYLASIFGTEKDKVNCSFYYKIGACRHGDNCSRIHNKPTFSQTVLLKN
LYITPENMALTGDGSHIFLCEEDAQKKFDEFYQEIFIEINDKYGEIEEMR
VCDNLGEHLVGNVYVMFRREEDAEKAINDLNNRWFGKRPIFAEFSPVTDF
RDACCAQYELNTCSRAGHCNFMHVKKLSREAENQLRSYLRKQRKHSSKYE
SRDRRRSIDRRRGDNRRDDHRDYGNSRRNRY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR009145U2AF_small
IPR000571Znf_CCCH
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: cellular component
TermDefinition
GO:0089701U2AF
GO:0005634nucleus
GO:0071011precatalytic spliceosome
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003729mRNA binding
GO:0005515protein binding
GO:0008187poly-pyrimidine tract binding
GO:0030628pre-mRNA 3'-splice site binding
Vocabulary: biological process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000381regulation of alternative mRNA splicing, via spliceosome
GO:0006397mRNA processing
GO:0008380RNA splicing
GO:0010906regulation of glucose metabolic process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 37..57
score: 49.57
coord: 131..155
score: 54.91
coord: 18..37
score: 74.32
coord: 75..90
score: 36.08
coord: 166..178
score: 55.59
coord: 104..126
score: 60.87
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 1..214
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 66..143
e-value: 1.1E-11
score: 54.9
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 13..39
e-value: 0.004
score: 26.4
coord: 149..175
e-value: 1.8
score: 14.2
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 15..38
e-value: 3.7E-7
score: 29.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 149..176
score: 9.385
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 12.389
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 43..146
e-value: 1.6E-31
score: 110.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 92..140
e-value: 6.0E-6
score: 26.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 65..147
score: 10.735
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..231
NoneNo IPR availablePANTHERPTHR12620:SF11SPLICING FACTOR U2AF 35 KDA SUBUNIT-RELATEDcoord: 1..214
NoneNo IPR availableCDDcd12538RRM_U2AF35coord: 43..146
e-value: 2.22374E-57
score: 175.617
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 80..150