SMED30015166

Overview
NameSMED30015166
Smed IDSMED30015166
Length (bp)1080
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30015166 (SMED30015166) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30015166 (SMED30015166) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30015166 (SMED30015166) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30015166 (SMED30015166) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30015166

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30015166 dd_Smed_v4_14241_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30015166 dd_Smed_v4_14241_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30015166 dd_Smed_v4_14241_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30015166 dd_Smed_v4_14241_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30015166 vs. Planmine SMEST
Match: SMESG000074160.1 (SMESG000074160.1)

HSP 1 Score: 251.136 bits (640), Expect = 3.572e-96
Identity = 156/236 (66.10%), Postives = 197/236 (83.47%), Query Frame = -3 
Query:  299 AMMNQSEIKNQIIKEVENKESGAVIENQPEQLKETKEEAEQWRQKTIRLKEMLLAVEEELMKETIKTKIMREKWERQIEKKIVYPEGKEKTY*ERDEELMREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLRXXXXXXXXXXXXXXXXXXXILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQDLKERTRNDE*SRPRYYTQMISEGEERTRAYKAK*EN 1006
             +MN +E K +++KE E  ES   I++QPE +K T EE E WRQ+T++LKEMLL  EEELM+ET+KTK+M+EKWE+Q+E+KI+YPEGKEKTY ER+EE+M+EF+QNQTRI N RKEI+TLEQ+KQDQQ+EIEKLRE+IK KE EI+EEGEETIKI+ QMQEEI Q+ T+YRIE+TKRT MEQ KE AKRQA YWK KW + +E++R++  SR R+Y Q I+E E+RTRAYKAK EN
Sbjct: 4949 TIMNPNETK-EVVKEAE--ESKPAIKDQPESIKVTSEEVELWRQRTLQLKEMLLIAEEELMQETLKTKMMKEKWEKQLEQKIIYPEGKEKTYQEREEEMMKEFMQNQTRIKNQRKEIQTLEQEKQDQQSEIEKLREVIKDKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHMEQAKEWAKRQARYWKIKWTEDREQSRSNWESRIRHYIQQIAEEEDRTRAYKAKWEN 5181

HSP 2 Score: 120.168 bits (300), Expect = 3.572e-96
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = -1 
Query:    1 ERMMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILLEQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN 306
            ERM+TQITDQAR+WRI+ +I EDANAKQ  YIVKL E E  ++QT+IKE+ +EQ+   +QR+ Q+ KTE KE+ IK EAR+WK QYQEAKKEI LLP++ILN
Sbjct: 5209 ERMLTQITDQARKWRIECRIFEDANAKQSNYIVKL-EQEIAYKQTRIKEMQIEQDEAHRQRRIQRIKTEKKEKWIKSEARRWKNQYQEAKKEIRLLPKKILN 5309
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BLAST of SMED30015166 vs. Planmine SMEST
Match: SMESG000023758.1 (SMESG000023758.1)

HSP 1 Score: 239.58 bits (610), Expect = 2.195e-92
Identity = 150/234 (64.10%), Postives = 193/234 (82.48%), Query Frame = -3 
Query:  299 MNQSEIKNQIIKEVENKESGAVIENQPEQLKETKEEAEQWRQKTIRLKEMLLAVEEELMKETIKTKIMREKWERQIEKKIVYPEGKEKTY*ERDEELMREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLRXXXXXXXXXXXXXXXXXXXILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQDLKERTRNDE*SRPRYYTQMISEGEERTRAYKAK*EN 1000
            MNQ+E K +++ E E  ES   I++QPE +K   EE E WRQ+T++LKEMLL  EEEL++ET+KTK+M+EKWE+Q+E+KI+YPEG+EKTY ER+EE+M+EF+QNQTRI + RKEIR LEQ+KQDQQ+EIE+LRE+IK KE EI+EEGEETIKI+ QMQEEI Q+ T+YRIE+TKRT +EQ KE AKRQA YWK KW + +E +R++  SR R+Y Q I+E E+RTRAYKAK EN
Sbjct: 4428 MNQNETK-EVVTEAE--ESKPTIKDQPESIKVINEEVELWRQRTLQLKEMLLIAEEELVQETLKTKMMKEKWEKQLEQKIIYPEGEEKTYQEREEEMMKEFMQNQTRIISQRKEIRMLEQEKQDQQSEIERLREVIKDKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHLEQAKEWAKRQARYWKIKWTEDREHSRSNWESRIRHYIQQIAEEEDRTRAYKAKWEN 4658

HSP 2 Score: 119.013 bits (297), Expect = 2.195e-92
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = -1 
Query:    1 ERMMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILLEQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN 306
            ERM+TQITDQAR+WRI+ KI EDANAKQ  YIVKL E E  +QQT++KE+ +EQ+   ++ Q+QQ KTEIKE++IK EA+KWKE +QEAKKEI LL +RILN
Sbjct: 4686 ERMLTQITDQARKWRIECKIWEDANAKQSSYIVKL-EQEVEYQQTRVKEMQIEQDEAHRKEQKQQWKTEIKEKAIKREAKKWKEHFQEAKKEIRLLLKRILN 4786
[Close]
BLAST of SMED30015166 vs. Planmine SMEST
Match: SMESG000053822.1 (SMESG000053822.1)

HSP 1 Score: 237.654 bits (605), Expect = 9.869e-92
Identity = 150/235 (63.83%), Postives = 193/235 (82.13%), Query Frame = -3 
Query:  299 MMNQSEIKNQIIKEVENKESGAVIENQPEQLKETKEEAEQWRQKTIRLKEMLLAVEEELMKETIKTKIMREKWERQIEKKIVYPEGKEKTY*ERDEELMREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLRXXXXXXXXXXXXXXXXXXXILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQDLKERTRNDE*SRPRYYTQMISEGEERTRAYKAK*EN 1003
            +MN +E K +++KE E  ES   I++Q E +K T EE E WRQ+T++LKEMLL  EEEL++ET+KTK+M+EKWE+Q+E+KI YPEGKEKTY ER+EE+M+EF+QNQTRI N RKEIR LEQ+KQDQQ+EIE+LRE+IK KE EI+EEGEETIKI+ QMQEEI Q+ T+YRIE+TKRT +EQ KE AKRQA +WK KW + +E++R++  SR R+Y Q I+E E+RTRAYK K EN
Sbjct: 4970 IMNPNETK-EVVKEAE--ESKPAIKDQSESIKVTSEEVELWRQRTLQLKEMLLIAEEELVQETLKTKMMKEKWEKQLEQKITYPEGKEKTYQEREEEMMKEFMQNQTRIINQRKEIRMLEQEKQDQQSEIERLREVIKDKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHLEQAKEWAKRQALHWKIKWTEDREQSRSNWESRIRHYIQQIAEEEDRTRAYKTKWEN 5201

HSP 2 Score: 119.013 bits (297), Expect = 9.869e-92
Identity = 64/102 (62.75%), Postives = 85/102 (83.33%), Query Frame = -1 
Query:    1 ERMMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILLEQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN 306
            ERM+TQITDQAR+WRI+ ++ EDANAKQ  YIVKL + E  +QQT++KE+ +EQ+   ++ Q++Q KTEIKE++IK EA+KWKE +QEAKKEI LLP+RILN
Sbjct: 5229 ERMLTQITDQARKWRIECRLWEDANAKQSSYIVKL-KQEVEYQQTRVKEMQIEQDEAHRKEQKRQWKTEIKEKAIKREAKKWKEHFQEAKKEIRLLPKRILN 5329
[Close]
BLAST of SMED30015166 vs. Planmine SMEST
Match: SMESG000066529.1 (SMESG000066529.1)

HSP 1 Score: 238.424 bits (607), Expect = 8.778e-91
Identity = 151/236 (63.98%), Postives = 192/236 (81.36%), Query Frame = -3 
Query:  299 AMMNQSEIKNQIIKEVENKESGAVIENQPEQLKETKEEAEQWRQKTIRLKEMLLAVEEELMKETIKTKIMREKWERQIEKKIVYPEGKEKTY*ERDEELMREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLRXXXXXXXXXXXXXXXXXXXILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQDLKERTRNDE*SRPRYYTQMISEGEERTRAYKAK*EN 1006
             +MN +EIK +++ E E  ES   I++Q E ++ T EE E WRQ+T++LKEMLL VEEEL++ET+KTK+M+EKWE+Q+E+K+ YPEGKEKTY ER+EE M+EF+QNQTRI N RKEI+TLEQ+KQDQQ+EIE+LRE+IK KE EI+EEGEETIKI+ QMQEEI Q+ T+YRIE+TKRT +EQ KE AKRQA +WK KW   KER RND  +R R+Y Q I+E E+RTRAYK K +N
Sbjct: 4201 TIMNPNEIK-EVVTEAE--ESKPAIKDQSESIEVTSEEVEVWRQRTLQLKEMLLIVEEELVQETLKTKMMKEKWEKQLEQKVTYPEGKEKTYQEREEERMKEFMQNQTRIKNQRKEIQTLEQEKQDQQSEIERLREVIKDKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHLEQAKEWAKRQALHWKAKWYGEKERARNDWEARIRHYIQQIAEEEDRTRAYKTKWKN 4433

HSP 2 Score: 115.161 bits (287), Expect = 8.778e-91
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = -1 
Query:    1 ERMMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILLEQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN 306
            ERM+ Q T +AR+W+ +Y++ +  NA Q+E+I K  +HE VWQQT++KE+L+EQE+TLKQRQ QQ KTE KE+ IK EARKWK QYQEAKKEI LLP++ILN
Sbjct: 4461 ERMVIQATGEARKWKDKYRLSKIENATQWEHIQKQ-DHEIVWQQTRMKEMLVEQEKTLKQRQIQQIKTEDKEKWIKSEARKWKNQYQEAKKEIRLLPKKILN 4561
[Close]
BLAST of SMED30015166 vs. Planmine SMEST
Match: SMESG000066529.1 (SMESG000066529.1)

HSP 1 Score: 238.424 bits (607), Expect = 9.000e-91
Identity = 151/235 (64.26%), Postives = 192/235 (81.70%), Query Frame = -3 
Query:  299 MMNQSEIKNQIIKEVENKESGAVIENQPEQLKETKEEAEQWRQKTIRLKEMLLAVEEELMKETIKTKIMREKWERQIEKKIVYPEGKEKTY*ERDEELMREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLRXXXXXXXXXXXXXXXXXXXILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQDLKERTRNDE*SRPRYYTQMISEGEERTRAYKAK*EN 1003
            +MN +EIK +++ E E  ES   I++Q E ++ T EE E WRQ+T++LKEMLL VEEEL++ET+KTK+M+EKWE+Q+E+K+ YPEGKEKTY ER+EE M+EF+QNQTRI N RKEI+TLEQ+KQDQQ+EIE+LRE+IK KE EI+EEGEETIKI+ QMQEEI Q+ T+YRIE+TKRT +EQ KE AKRQA +WK KW   KER RND  +R R+Y Q I+E E+RTRAYK K +N
Sbjct: 4206 IMNPNEIK-EVVTEAE--ESKPAIKDQSESIEVTSEEVEVWRQRTLQLKEMLLIVEEELVQETLKTKMMKEKWEKQLEQKVTYPEGKEKTYQEREEERMKEFMQNQTRIKNQRKEIQTLEQEKQDQQSEIERLREVIKDKEAEIREEGEETIKIIQQMQEEIGQISTQYRIEKTKRTHLEQAKEWAKRQALHWKAKWYGEKERARNDWEARIRHYIQQIAEEEDRTRAYKTKWKN 4437

HSP 2 Score: 114.775 bits (286), Expect = 9.000e-91
Identity = 64/102 (62.75%), Postives = 83/102 (81.37%), Query Frame = -1 
Query:    1 ERMMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILLEQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN 306
            ERM+ Q T +AR+W+ +Y++ +  NA Q+E+I K  +HE VWQQT++KE+L+EQE+TLKQRQ QQ KTE KE+ IK EARKWK QYQEAKKEI LLP++ILN
Sbjct: 4465 ERMVIQATGEARKWKDKYRLSKIENATQWEHIQKQ-DHEIVWQQTRMKEMLVEQEKTLKQRQIQQIKTEDKEKWIKSEARKWKNQYQEAKKEIRLLPKKILN 4565
The following BLAST results are available for this feature:
BLAST of SMED30015166 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30015166 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000074160.13.572e-9666.10SMESG000074160.1[more]
SMESG000023758.12.195e-9264.10SMESG000023758.1[more]
SMESG000053822.19.869e-9263.83SMESG000053822.1[more]
SMESG000066529.18.778e-9163.98SMESG000066529.1[more]
SMESG000066529.19.000e-9164.26SMESG000066529.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30015166 ID=SMED30015166|Name=SMED30015166|organism=Schmidtea mediterranea sexual|type=transcript|length=1080bp
ATTTAGTATCCGCTCGGGCAACAGTCCTATTTCTTTCTTGGCTTCTTGAT
ACTGTTCTTTCCACTTTCTCGCTTCCATTTTTATCGATTCCTCTTTGATT
TCCGTCTTTCTCTGTTGTTCTTGCCTTTGTTTGAGAGTTCTTTCCTGTTC
CAGCAGTATTTCTTTTATTTTGGTTTGTTGCCATACTGTTTCATGTTCTA
CTAACTTCACTATGTACTCGAATTGTTTCGCGTTTGCGTCCTCTAATATT
TTATACTGTATTCTCCATCTTCTCGCTTGATCTGTTATTTGGGTCATCAT
TCTCTCACTTGGCTTTGTAGGCTCTTGTTCGCTCTTCCCCTTCTGATATC
ATTTGCGTATAATATCTGGGGCGCGATTATTCATCATTCCTGGTGCGCTC
TTTCAGGTCTTGCCATTTCGTTTTCCAGTATGATGCTTGACGCTTCGCCG
CTTCTTTGGTTTGTTCCATACTTGTTCTCTTGGTTCTTTCTATTCGATAT
TTGGTTCCCATTTGTTCTATTTCTTCTTGCATTTGATTTAAAATTTTAAT
AGTTTCCTCACCTTCTTCTTGTATCTCTGTTTCTTTACCTTTTATTATTT
CTCGTAGCTTCTCAATTTCATTTTGTTGATCTTGTTTGTCTTGTTCCAGC
GTTCGTATCTCTTTTCTGTGGTTTGCAATTCTAGTTTGATTTTGAATGAA
TTCTCTCATCAGCTCCTCATCTCGTTCTTAGTAGGTCTTCTCTTTTCCTT
CTGGATATACTATTTTCTTTTCTATCTGTCTTTCCCATTTCTCTCTCATA
ATTTTAGTTTTTATCGTCTCTTTCATTAGTTCCTCTTCCACGGCTAATAA
CATCTCCTTTAGTCGAATCGTCTTTTGTCGCCATTGCTCTGCTTCCTCTT
TCGTTTCTTTTAGCTGTTCTGGTTGATTTTCGATCACAGCTCCTGACTCT
TTGTTTTCAACTTCTTTTATTATTTGATTTTTTATCTCACTTTGATTCAT
CATGGCTTCTGAATATTAATATTAATTATTCTCTTTTTCTCAATTATATC
GTAATTTATATTATAATTTATGTCATAATT
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protein sequence of SMED30015166-orf-1

>SMED30015166-orf-1 ID=SMED30015166-orf-1|Name=SMED30015166-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=111bp
MREFIQNQTRIANHRKEIRTLEQDKQDQQNEIEKLREIIKGKETEIQEEG
EETIKILNQMQEEIEQMGTKYRIERTKRTSMEQTKEAAKRQASYWKTKWQ
DLKERTRNDE*
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protein sequence of SMED30015166-orf-2

>SMED30015166-orf-2 ID=SMED30015166-orf-2|Name=SMED30015166-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=100bp
MMTQITDQARRWRIQYKILEDANAKQFEYIVKLVEHETVWQQTKIKEILL
EQERTLKQRQEQQRKTEIKEESIKMEARKWKEQYQEAKKEIGLLPERILN
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR015042BPS-dom