Retinoic acid receptor beta
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015041 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Match: RARA (retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]) HSP 1 Score: 108.612 bits (270), Expect = 2.886e-24 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 84 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Match: RARA (retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]) HSP 1 Score: 108.612 bits (270), Expect = 2.886e-24 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 84 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Match: RARB (retinoic acid receptor beta [Source:HGNC Symbol;Acc:HGNC:9865]) HSP 1 Score: 107.457 bits (267), Expect = 3.266e-24 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR+++CFE GM + VR+DR Sbjct: 84 VYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Match: RARA (retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]) HSP 1 Score: 107.842 bits (268), Expect = 3.881e-24 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 79 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 157
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Match: NR6A1 (nuclear receptor subfamily 6 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7985]) HSP 1 Score: 102.834 bits (255), Expect = 4.821e-24 Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C D+ATGLHY +++CEGCKGFFKRSI ++ Y+C + NCV++++ RN CQ CR+ +C + GM +R+D PG R Sbjct: 18 CLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGR 97
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Match: nhr-91 (Nuclear hormone receptor family member nhr-91 [Source:UniProtKB/Swiss-Prot;Acc:Q9U2R6]) HSP 1 Score: 114.39 bits (285), Expect = 1.523e-26 Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C +N C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 100 CSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 179
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Match: nhr-91 (Nuclear hormone receptor family member nhr-91 [Source:UniProtKB/Swiss-Prot;Acc:Q9U2R6]) HSP 1 Score: 114.39 bits (285), Expect = 1.523e-26 Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C +N C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 100 CSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 179
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Match: nhr-91 (Nuclear hormone receptor family member nhr-91 [Source:UniProtKB/Swiss-Prot;Acc:Q9U2R6]) HSP 1 Score: 114.39 bits (285), Expect = 1.523e-26 Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C +N C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 100 CSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 179
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Match: nhr-88 (Nuclear Hormone Receptor family [Source:UniProtKB/TrEMBL;Acc:H2KZA1]) HSP 1 Score: 95.9005 bits (237), Expect = 5.017e-22 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 559 PGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 PG NG +C VC D++ G HY VM C GCKGFF+R+I++++ Y CR C I+K+ RNAC+ CR +RC GM+ +R DR Sbjct: 27 PGMDNGD-GQCMVCGDRSAGKHYGVMACYGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCRFQRCLTVGMEPEAIRPDR 110
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Match: nhr-88 (Nuclear Hormone Receptor family [Source:UniProtKB/TrEMBL;Acc:H2KZA1]) HSP 1 Score: 95.9005 bits (237), Expect = 5.017e-22 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 559 PGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 PG NG +C VC D++ G HY VM C GCKGFF+R+I++++ Y CR C I+K+ RNAC+ CR +RC GM+ +R DR Sbjct: 27 PGMDNGD-GQCMVCGDRSAGKHYGVMACYGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCRFQRCLTVGMEPEAIRPDR 110
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Match: Hr4 (gene:FBgn0264562 transcript:FBtr0333341) HSP 1 Score: 112.079 bits (279), Expect = 6.607e-25 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 921 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1000
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Match: Hr4 (gene:FBgn0264562 transcript:FBtr0333342) HSP 1 Score: 112.079 bits (279), Expect = 8.123e-25 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 921 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1000
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Match: Hr4 (gene:FBgn0264562 transcript:FBtr0333338) HSP 1 Score: 111.694 bits (278), Expect = 9.235e-25 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 1014 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1093
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Match: Hr4 (gene:FBgn0264562 transcript:FBtr0333339) HSP 1 Score: 111.309 bits (277), Expect = 1.310e-24 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 1245 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1324
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Match: Hr4 (gene:FBgn0264562 transcript:FBtr0333344) HSP 1 Score: 111.309 bits (277), Expect = 1.322e-24 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 1245 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1324
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Match: rargb (retinoic acid receptor, gamma b [Source:NCBI gene;Acc:100034753]) HSP 1 Score: 105.531 bits (262), Expect = 8.363e-24 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 37 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 111
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Match: nr2c2 (nuclear receptor subfamily 2, group C, member 2 [Source:ZFIN;Acc:ZDB-GENE-080403-8]) HSP 1 Score: 107.457 bits (267), Expect = 1.007e-23 Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTP 819 C VC DKA+G HY ++CEGCKGFFKRS++ Y CR+N +CVINK RN CQ CR+R+C E GMK V+ +R P Sbjct: 147 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSNQDCVINKHHRNRCQFCRLRKCLEMGMKMESVQSERKP 223
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Match: rxrba (retinoid x receptor, beta a [Source:NCBI gene;Acc:30530]) HSP 1 Score: 102.064 bits (253), Expect = 1.196e-23 Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1 Query: 538 RPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 +P H PG + CA+C D+++G HY V +CEGCKGFFKR+++ + +Y CR+N +C+++K RN CQ CR ++C GMK +V+D+R Sbjct: 117 KPLSSHSPGPMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDER 208
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Match: raraa (retinoic acid receptor, alpha a [Source:NCBI gene;Acc:30680]) HSP 1 Score: 105.531 bits (262), Expect = 1.405e-23 Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NC+INK TRN CQ CR+++C E GM + VR+DR Sbjct: 74 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDR 152
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Match: raraa (retinoic acid receptor, alpha a [Source:NCBI gene;Acc:30680]) HSP 1 Score: 105.145 bits (261), Expect = 1.892e-23 Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NC+INK TRN CQ CR+++C E GM + VR+DR Sbjct: 71 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDR 149
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:100488600]) HSP 1 Score: 108.997 bits (271), Expect = 1.422e-24 Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 84 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:100488600]) HSP 1 Score: 108.997 bits (271), Expect = 1.432e-24 Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 82 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 160
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:100488600]) HSP 1 Score: 108.997 bits (271), Expect = 1.526e-24 Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 82 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 160
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:100488600]) HSP 1 Score: 109.383 bits (272), Expect = 1.554e-24 Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 102 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 180
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:100488600]) HSP 1 Score: 108.227 bits (269), Expect = 2.096e-24 Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 77 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 155
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Match: Rarg (retinoic acid receptor, gamma [Source:MGI Symbol;Acc:MGI:97858]) HSP 1 Score: 105.531 bits (262), Expect = 3.789e-25 Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VC DK++G HY V +CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 86 VYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 164
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Match: Rarb (retinoic acid receptor, beta [Source:MGI Symbol;Acc:MGI:97857]) HSP 1 Score: 107.071 bits (266), Expect = 2.798e-24 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR+++CFE GM + VR+DR Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 155
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Match: Rarb (retinoic acid receptor, beta [Source:MGI Symbol;Acc:MGI:97857]) HSP 1 Score: 107.457 bits (267), Expect = 3.940e-24 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR+++CFE GM + VR+DR Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 155
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Match: Nr6a1 (nuclear receptor subfamily 6, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352459]) HSP 1 Score: 102.834 bits (255), Expect = 4.135e-24 Identity = 40/80 (50.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C D+ATGLHY +++CEGCKGFFKRSI ++ Y+C + NCV++++ RN CQ CR+ +C + GM +R+D PG R Sbjct: 18 CLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGR 97
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Match: Rara (retinoic acid receptor, alpha [Source:MGI Symbol;Acc:MGI:97856]) HSP 1 Score: 107.071 bits (266), Expect = 4.919e-24 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 I C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CF+ GM + VR+DR Sbjct: 84 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFDVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Match: sp|Q9U2R6|NHR91_CAEEL (Nuclear hormone receptor family member nhr-91 OS=Caenorhabditis elegans OX=6239 GN=nhr-91 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.938e-25 Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C +N C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 100 CSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 179
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Match: sp|P18515|RARB_NOTVI (Retinoic acid receptor beta (Fragment) OS=Notophthalmus viridescens OX=8316 GN=RARB PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.440e-25 Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR++RCFE GM + VR+DR Sbjct: 30 VYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQRCFEVGMSKESVRNDR 108
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Match: sp|Q9W539|HR4_DROME (Hormone receptor 4 OS=Drosophila melanogaster OX=7227 GN=Hr4 PE=1 SV=4) HSP 1 Score: 112.079 bits (279), Expect = 6.623e-24 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C +C+DKATGLHY ++TCEGCKGFFKR++Q + Y C + C I K RN CQ CR ++C E+GM VR+DR PG R Sbjct: 921 CMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGR 1000
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Match: sp|P22448|RARB_CHICK (Retinoic acid receptor beta OS=Gallus gallus OX=9031 GN=RARB PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 9.918e-24 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR+++CFE GM + VR+DR Sbjct: 84 VYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Match: sp|Q9W6B3|RARB_COTJA (Retinoic acid receptor beta OS=Coturnix japonica OX=93934 GN=RARB PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.001e-23 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NCVINK TRN CQ CR+++CFE GM + VR+DR Sbjct: 84 VYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 162
BLAST of Retinoic acid receptor beta vs. TrEMBL
Match: A0A3M6TL04 (Uncharacterized protein OS=Pocillopora damicornis OX=46731 GN=pdam_00001358 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.541e-25 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 493 SEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 +EP K VS + G + P +G +EC VC DKATG HY V TCEGCKGFFKR++Q + Y C+ + NC +N+ RN CQ CR ++C +GM + VR+DRTPG R Sbjct: 58 TEPSKPGVSVDNEEGGHSEGQPVAANSGATSECVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCKGDGNCEVNQLNRNRCQYCRFQKCMAQGMLKEAVREDRTPGGR 169
BLAST of Retinoic acid receptor beta vs. TrEMBL
Match: A0A2B4SY17 (Estrogen-related receptor gamma OS=Stylophora pistillata OX=50429 GN=ESRRG PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.591e-25 Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 493 SEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 +EP K VS + G P G +EC VC DKATG HY V TCEGCKGFFKR++Q + Y C+ + NC +N+ RN CQ CR ++C +GM + VR+DRTPG R Sbjct: 58 AEPSKLGVSVDNESGYKDS-QPVAANGGATSECVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCKGDGNCEVNQLNRNRCQYCRFQKCMAQGMLKEAVREDRTPGGR 168
BLAST of Retinoic acid receptor beta vs. TrEMBL
Match: A7S8G8 (Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g108851 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.262e-24 Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C VC DKATG HY V TCEGCKGFFKR++Q + Y CR N +C IN+ TRN CQ CR +C + GM + VRDDRTPG R Sbjct: 4 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFEKCVKSGMLKQAVRDDRTPGGR 83
BLAST of Retinoic acid receptor beta vs. TrEMBL
Match: A0A261BEI7 (Uncharacterized protein (Fragment) OS=Caenorhabditis remanei OX=31234 GN=FL82_02349 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 3.495e-24 Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C NN C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 107 CSVCADKSTGLHYGASTCEGCKGFFKRSVQNKKIYHCNQNNLCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 186
BLAST of Retinoic acid receptor beta vs. TrEMBL
Match: A0A261CNG3 (Uncharacterized protein (Fragment) OS=Caenorhabditis latens OX=1503980 GN=FL83_01766 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.575e-23 Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C+VC DK+TGLHY TCEGCKGFFKRS+Q +K Y C NN C I+K+ RN CQ+CR R+C KGM VR+DR PG R Sbjct: 104 CSVCADKSTGLHYGASTCEGCKGFFKRSVQNKKIYHCNQNNLCEIDKQNRNRCQSCRFRKCISKGMLTEAVREDRMPGGR 183
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Match: rarga (retinoic acid receptor gamma-A [Source:NCBI gene;Acc:103046242]) HSP 1 Score: 105.531 bits (262), Expect = 1.181e-23 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 151
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Match: rarga (retinoic acid receptor gamma-A [Source:NCBI gene;Acc:103046242]) HSP 1 Score: 105.916 bits (263), Expect = 1.537e-23 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 77 VYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 155
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Match: RARB (retinoic acid receptor beta [Source:HGNC Symbol;Acc:HGNC:9865]) HSP 1 Score: 105.145 bits (261), Expect = 1.825e-23 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CF GM + VR+DR Sbjct: 82 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDR 156
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Match: rarga (retinoic acid receptor gamma-A [Source:NCBI gene;Acc:103046242]) HSP 1 Score: 105.531 bits (262), Expect = 1.935e-23 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 73 VYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 151
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Match: hnf4g (hepatocyte nuclear factor 4 gamma [Source:NCBI gene;Acc:103037173]) HSP 1 Score: 103.99 bits (258), Expect = 3.055e-23 Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1 Query: 571 NGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 NG+ + CA+C DKATG HY +C+GCKGFF+RSI+ Y CR N CV++K+ RN C+ CR+ +CF GMK+ V+++R Sbjct: 28 NGVNSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFNRQCVVDKDKRNQCRFCRLHKCFRAGMKKEAVQNER 108
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006803.1 (pep scaffold:Pmarinus_7.0:GL479639:153667:156574:-1 gene:ENSPMAG00000006138.1 transcript:ENSPMAT00000006803.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 92.4337 bits (228), Expect = 8.722e-22 Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMK 789 C VC D+A+G HY ++CEGCKGFFKRS++ Y CR + +CVINK RN CQ CR+++CF GMK Sbjct: 127 CVVCGDRASGRHYGAVSCEGCKGFFKRSVRKNLKYTCRGSQDCVINKHHRNRCQYCRLQKCFNVGMK 193
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Match: nr1d2a (nuclear receptor subfamily 1, group D, member 2a [Source:ZFIN;Acc:ZDB-GENE-040504-1]) HSP 1 Score: 97.8265 bits (242), Expect = 2.273e-21 Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 541 PPKIHPPGT--INGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYK-CRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTP 819 PP PG+ ING++ C VC D A+G HY V CEGCKGFF+RSIQ YK C N C I + RN CQ CR ++C GM ++ VR R P Sbjct: 104 PPAGASPGSVAINGVVLLCKVCGDAASGFHYGVHACEGCKGFFRRSIQQNIKYKPCLKNETCPIVRANRNRCQHCRFKKCLSVGMSKDAVRFGRIP 199
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Match: RARA (retinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]) HSP 1 Score: 95.1301 bits (235), Expect = 5.871e-21 Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1 Query: 601 QDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRT 816 QDK++G HY V +CEGCKGFF+RSIQ Y C + C+INK TRN CQ CR++RC E GM + VR+DR+ Sbjct: 1 QDKSSGYHYGVSSCEGCKGFFRRSIQNIMVYTCHRDKKCIINKITRNRCQYCRLQRCLEVGMSKESVRNDRS 72
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Match: ESR2 (estrogen receptor 2 [Source:HGNC Symbol;Acc:HGNC:3468]) HSP 1 Score: 91.6633 bits (226), Expect = 1.071e-20 Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRD 807 CAVC D A+G HY V +CEGCK FFKRSIQ + Y C N C I+K R +CQACR+R+C E GM VRD Sbjct: 35 CAVCSDLASGYHYGVWSCEGCKAFFKRSIQGKTNYICPATNQCTIDKNRRKSCQACRLRKCHEVGM----VRD 103
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Match: ESR2 (estrogen receptor 2 [Source:HGNC Symbol;Acc:HGNC:3468]) HSP 1 Score: 90.1225 bits (222), Expect = 2.012e-20 Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENL 798 C+VC D ++G HY V TCEGCK FFKRS+Q + + C N+C I+K R CQACR+R+C+E GM ++ Sbjct: 32 CSVCGDFSSGYHYGVWTCEGCKAFFKRSVQGKNNFVCPATNHCTIDKTRRRRCQACRLRKCYEAGMIRDV 101
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Match: EDO39982 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8G8]) HSP 1 Score: 116.701 bits (291), Expect = 2.316e-28 Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 C VC DKATG HY V TCEGCKGFFKR++Q + Y CR N +C IN+ TRN CQ CR +C + GM + VRDDRTPG R Sbjct: 4 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFEKCVKSGMLKQAVRDDRTPGGR 83
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Match: EDO42936 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S012]) HSP 1 Score: 103.99 bits (258), Expect = 5.329e-24 Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 580 LAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTP 819 + +C VC D+A+G HY VMTC+GC+GFFKRS++ AY+C+ N+C I+ RN CQACR+R+CFE M + V+ +R P Sbjct: 1 MVQCRVCGDRASGKHYGVMTCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQHERAP 80
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Match: EDO46487 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQ27]) HSP 1 Score: 96.2857 bits (238), Expect = 1.011e-21 Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1 Query: 595 VCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 +C D+ATG HY +C+GCKGFF+RS++ Y CR NCVINK+ RN C+ CR+R+CF GMK+ V+++R Sbjct: 3 ICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRNQCRFCRLRKCFRAGMKKEAVQNER 75
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Match: EDO27017 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TAF5]) HSP 1 Score: 94.3597 bits (233), Expect = 1.439e-21 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 CA+C D+++G HY V +CEGCK FFKR++Q + Y C + +C I+K R CQ CR ++C GM + VR+DR PG R Sbjct: 14 CAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQYCRFQKCLALGMLKEAVREDRAPGGR 93
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Match: EDO42195 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S286]) HSP 1 Score: 95.9005 bits (237), Expect = 2.335e-21 Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNR 828 CA+C D+++G HY V +CEGCK FFKR++Q + Y C + +C I+K R CQ CR ++C GM + VR+DR PG R Sbjct: 14 CAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQYCRFQKCLALGMLKEAVREDRAPGGR 93 HSP 2 Score: 64.6994 bits (156), Expect = 4.378e-11 Identity = 45/185 (24.32%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 1408 EQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLIC---SFKSLNIDIYELCLIQYVVIEDEE--GDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCV 1947 E I+E E+ +I +AK+ PGFC+ D ++ ++ + L +L +R+ RS + H + +A + + P ++ N+ + Q QL C +SL +D+ E + +++ ++E G L D F+ N + + L+ Y + YP+ P R+ I+L L + + + +C+ Sbjct: 148 EAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLILRICQRS-TPHQGAVMVAKDTLLSPDNVFNIVL-----EQWAGQLSCFAYKLQSLQLDMAEFACVNAIMLFEQETSGGLRNRDLVDFVL-------NRTLDALRDYIKSSYPEKPSRFAHILLKLPTLRDMATRMAEECL 319
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:101155959]) HSP 1 Score: 106.686 bits (265), Expect = 6.055e-24 Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRT 816 C VCQDK++G HY V CEGCKGFF+RS+Q Y C + NC+INK TRN CQ CR++RCF GM + VR+DR+ Sbjct: 90 CFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRS 165
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Match: RARB (retinoic acid receptor beta [Source:NCBI gene;Acc:101155959]) HSP 1 Score: 105.916 bits (263), Expect = 7.491e-24 Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRT 816 C VCQDK++G HY V CEGCKGFF+RS+Q Y C + NC+INK TRN CQ CR++RCF GM + VR+DR+ Sbjct: 87 CFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQRCFAVGMSKESVRNDRS 162
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Match: ENSORLT00000010680.2 (retinoic acid receptor beta [Source:NCBI gene;Acc:100125515]) HSP 1 Score: 106.301 bits (264), Expect = 1.023e-23 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 577 ILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 + C VCQDK++G HY V CEGCKGFF+RSIQ Y C + NC+INK TRN CQ CR+++CF GM + VR+DR Sbjct: 89 VYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFAVGMSKESVRNDR 167
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Match: rargb (retinoic acid receptor gamma-A [Source:NCBI gene;Acc:100125516]) HSP 1 Score: 105.916 bits (263), Expect = 1.256e-23 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 85 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 159
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Match: rargb (retinoic acid receptor gamma-A [Source:NCBI gene;Acc:100125516]) HSP 1 Score: 105.531 bits (262), Expect = 1.530e-23 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDR 813 C VCQDK++G HY V +CEGCKGFF+RSIQ Y C + NC INK TRN CQ CR+++CFE GM + VR+DR Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDR 151
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Match: SMESG000054304.1 (SMESG000054304.1) HSP 1 Score: 1068.53 bits (2762), Expect = 0.000e+0 Identity = 563/565 (99.65%), Postives = 563/565 (99.65%), Query Frame = 1 Query: 325 PSEV-KIQISTLAYLICGLIHHCQFGYNTIAMISEYSMKQGSSTTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRXXXXXXXXXXXXXXXXXXXXXAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWEXXXXXXXXXXXXXXXXXQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL 2016 PSEV KIQISTLAYLICGLIHHCQFGYNTIAMISEYSMKQGS TTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRKKKFNESSSSSNKSIISLENKAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWELSLLSDVLVDNNSSDVVQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL Sbjct: 123 PSEVVKIQISTLAYLICGLIHHCQFGYNTIAMISEYSMKQGSLTTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRKKKFNESSSSSNKSIISLENKAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWELSLLSDVLVDNNSSDVVQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL 687
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Match: SMESG000054304.1 (SMESG000054304.1) HSP 1 Score: 1009.21 bits (2608), Expect = 0.000e+0 Identity = 533/534 (99.81%), Postives = 533/534 (99.81%), Query Frame = 1 Query: 415 MISEYSMKQGSSTTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRXXXXXXXXXXXXXXXXXXXXXAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWEXXXXXXXXXXXXXXXXXQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL 2016 MISEYSMKQGS TTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRKKKFNESSSSSNKSIISLENKAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWELSLLSDVLVDNNSSDVVQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL Sbjct: 1 MISEYSMKQGSLTTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGTINGILAECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGNRKKKFNESSSSSNKSIISLENKAQIYKSNILDLQTSIKQESQCIEEFKDLSLDGYSVLCKKRFKNLNSEHPKEIHTLDYENLCISSNHINNELLSGNLSSPNDIDDWELSLLSDVLVDNNSSDVVQQMVSVYDQSRVTTDDGFSTLINCSSNSEMQTKDCKQEPKCLMHLLTKLIKAKPAEPAFCKYFLKYPNSEQILECLADEIHLIIKFAKKTPGFCERDMNRKLGIIHKYSLNILFIRMIYRSFSCHSNYIQIASNLCVGPQDIPNMEILSPRFYQTMVQLICSFKSLNIDIYELCLIQYVVIEDEEGDLELHDNSPFIQALNNQKRNISQNYLKIYTSTQYPDLPQRWILIMLCLSQIDEASKLFMLDCVELIKANRLPISNEIMKELFSPYL 534
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Match: SMESG000017244.1 (SMESG000017244.1) HSP 1 Score: 98.2117 bits (243), Expect = 3.514e-21 Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTPGN 825 C VC D +TG HY V++CEGCKGFFKRSI+ Y+CR +N C+I K RN CQ CR+++C +GM+ + V+++R N Sbjct: 72 CVVCGDYSTGRHYGVLSCEGCKGFFKRSIRNGSRYRCRGSNGCIITKAFRNRCQHCRLQKCLNEGMRMDWVQNERKMNN 150
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Match: SMESG000019911.1 (SMESG000019911.1) HSP 1 Score: 95.5153 bits (236), Expect = 3.097e-20 Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 Query: 589 CAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRT 816 CA+C D ATG HY V+ CEGCKGFFKR+I+ E Y CR N C I + RN CQ+CR +C ++GMK V+ +R+ Sbjct: 176 CAICTDLATGKHYGVLACEGCKGFFKRTIRKELHYTCREKNMCPITERLRNRCQSCRFNKCLDQGMKIEAVQRERS 251
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Match: SMESG000056421.1 (SMESG000056421.1) HSP 1 Score: 93.9745 bits (232), Expect = 7.525e-20 Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 586 ECAVCQDKATGLHYSVMTCEGCKGFFKRSIQAEKAYKCRNNNNCVINKETRNACQACRIRRCFEKGMKENLVRDDRTP 819 EC VC DK++G HY TCEGCK FFKRS++ Y CR N+NC I+ RN CQ CR ++C + GM++ V+ R P Sbjct: 111 ECVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRNLTYSCRGNHNCPIDIHHRNQCQNCRFQKCLKMGMRKEAVQQGRIP 188 The following BLAST results are available for this feature:
BLAST of Retinoic acid receptor beta vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retinoic acid receptor beta vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retinoic acid receptor beta vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retinoic acid receptor beta vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015041 ID=SMED30015041|Name=Retinoic acid receptor beta|organism=Schmidtea mediterranea sexual|type=transcript|length=2275bpback to top protein sequence of SMED30015041-orf-1 >SMED30015041-orf-1 ID=SMED30015041-orf-1|Name=SMED30015041-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=535bp MISEYSMKQGSSTTDFGVEKLLMREKSEPEKCEVSTRRKPGRPPKIHPPGback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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