Thyroglobulin
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30015030 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Thyroglobulin vs. Ensembl Human
Match: TG (thyroglobulin [Source:HGNC Symbol;Acc:HGNC:11764]) HSP 1 Score: 60.4622 bits (145), Expect = 8.626e-10 Identity = 37/124 (29.84%), Postives = 56/124 (45.16%), Query Frame = 2 Query: 347 TAKESPT-YFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNK---------------ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICP 670 T +++P FVP C + GSY+ +QC C+C NS GK + + C E+ + + + C S G + P+QC N+ C+CV+ G A+ G R AI CP Sbjct: 607 TCEQTPERLFVPSCTTEGSYEDVQCFSGECWCVNSWGKELPGSRVRGGQPRCPTDCEKQRARMQSLMGSQPAGSTLFVPACTSEGHFLPVQCFNSECYCVDAEGQAIPG---TRSAIGKPKKCP 727
BLAST of Thyroglobulin vs. Ensembl Xenopus
Match: amd1 (adenosylmethionine decarboxylase 1 [Source:Xenbase;Acc:XB-GENE-484611]) HSP 1 Score: 50.447 bits (119), Expect = 1.564e-6 Identity = 34/129 (26.36%), Postives = 52/129 (40.31%), Query Frame = 2 Query: 353 KESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNC--KCVLERDKNKILR-------------CKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK*KLFSG 694 K S ++P C G Y+ IQC + C+C + G+ I + C KC ER + +R C G + +QC +CFCV+ G + G V + CP +L +G Sbjct: 610 KRSSEIYIPACKEDGRYNDIQCSKAECWCVDDQGREIDRTRTQGTHPRCPTKCEKERYRQTAVRESLPPGAELFIPACDLEGHFLTVQCTGKLCFCVDLEGRIIPGTQKVSGGDIQ---CPSLCQLAAG 735
BLAST of Thyroglobulin vs. Ensembl Mouse
Match: Tg (thyroglobulin [Source:MGI Symbol;Acc:MGI:98733]) HSP 1 Score: 55.8398 bits (133), Expect = 1.828e-8 Identity = 33/113 (29.20%), Postives = 52/113 (46.02%), Query Frame = 2 Query: 335 YNISTAKESP-TYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNC--KCVLERDKNKIL-------------RCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 ++ K+ P +FVP C + GSY+ IQC C+C +S GK + + C KC +R + + L C G + P+QC N+ C+CV+ G + G Sbjct: 603 FSAQACKQMPGKFFVPSCTAGGSYEDIQCYAGECWCVDSRGKELDGSRVRGGRPRCPTKCEKQRAQMQSLASAQPAGSSFFVPTCTREGYFLPVQCFNSECYCVDTEGQVIPG 715 HSP 2 Score: 48.1358 bits (113), Expect = 7.350e-6 Identity = 28/103 (27.18%), Postives = 47/103 (45.63%), Query Frame = 2 Query: 371 FVPICDSFGSYDPIQCRRD--TCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKIL--------------RCKSNGEYKPIQC--ANTMCFCVNRSGIAVQG 625 +VP C GS+ +QC+ D +C+C +S G+ + + C + K +IL +C+ +G Y P+QC C+CV+ G+ V G Sbjct: 49 YVPQCSEDGSFQTVQCQNDGQSCWCVDSDGREVPGSRQLGRPTVCLSFCQLHKQRILLGSYINSTDALYLPQCQDSGNYAPVQCDLQRVQCWCVDTEGMEVYG 151
BLAST of Thyroglobulin vs. UniProt/SwissProt
Match: sp|P01266|THYG_HUMAN (Thyroglobulin OS=Homo sapiens OX=9606 GN=TG PE=1 SV=5) HSP 1 Score: 60.4622 bits (145), Expect = 4.142e-9 Identity = 37/124 (29.84%), Postives = 56/124 (45.16%), Query Frame = 2 Query: 347 TAKESPT-YFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNK---------------ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICP 670 T +++P FVP C + GSY+ +QC C+C NS GK + + C E+ + + + C S G + P+QC N+ C+CV+ G A+ G R AI CP Sbjct: 607 TCEQTPERLFVPSCTTEGSYEDVQCFSGECWCVNSWGKELPGSRVRGGQPRCPTDCEKQRARMQSLMGSQPAGSTLFVPACTSEGHFLPVQCFNSECYCVDAEGQAIPG---TRSAIGKPKKCP 727
BLAST of Thyroglobulin vs. UniProt/SwissProt
Match: sp|P06882|THYG_RAT (Thyroglobulin OS=Rattus norvegicus OX=10116 GN=Tg PE=1 SV=4) HSP 1 Score: 58.151 bits (139), Expect = 2.351e-8 Identity = 34/106 (32.08%), Postives = 49/106 (46.23%), Query Frame = 2 Query: 353 KESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNC--KCVLERDKNKIL-------------RCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 + S +FVP C + GSY+ IQC C+C NS GK + C KC +R + + L C S G + P+QC N+ C+CV+ G + G Sbjct: 610 QTSGRFFVPSCTAEGSYEDIQCYAGECWCVNSQGKEVEGSRVSGGHPRCPTKCEKQRAQMQNLAGAQPAGSSFFVPTCTSEGYFLPVQCFNSECYCVDAEGQVIPG 715
BLAST of Thyroglobulin vs. UniProt/SwissProt
Match: sp|O08710|THYG_MOUSE (Thyroglobulin OS=Mus musculus OX=10090 GN=Tg PE=1 SV=3) HSP 1 Score: 55.8398 bits (133), Expect = 1.279e-7 Identity = 33/113 (29.20%), Postives = 52/113 (46.02%), Query Frame = 2 Query: 335 YNISTAKESP-TYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNC--KCVLERDKNKIL-------------RCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 ++ K+ P +FVP C + GSY+ IQC C+C +S GK + + C KC +R + + L C G + P+QC N+ C+CV+ G + G Sbjct: 603 FSAQACKQMPGKFFVPSCTAGGSYEDIQCYAGECWCVDSRGKELDGSRVRGGRPRCPTKCEKQRAQMQSLASAQPAGSSFFVPTCTREGYFLPVQCFNSECYCVDTEGQVIPG 715
BLAST of Thyroglobulin vs. UniProt/SwissProt
Match: sp|P01267|THYG_BOVIN (Thyroglobulin OS=Bos taurus OX=9913 GN=TG PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 4.102e-7 Identity = 31/117 (26.50%), Postives = 52/117 (44.44%), Query Frame = 2 Query: 365 TYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNK---------------ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICP 670 + FVP C + GSY+ +QC C+C ++ G+ ++ + C E+ + + + C S G + P+QC N+ C+CV+ G Q I R A+ CP Sbjct: 613 SLFVPACTAEGSYEEVQCFAGDCWCVDAQGRELAGSRVRGGRPRCPTECEKQRARMQSLLGSQPAGSSLFVPACTSKGNFLPVQCFNSECYCVDTEG---QPIPGTRSALGEPKKCP 726
BLAST of Thyroglobulin vs. UniProt/SwissProt
Match: sp|F1RRV3|THYG_PIG (Thyroglobulin OS=Sus scrofa OX=9823 GN=TG PE=1 SV=5) HSP 1 Score: 51.2174 bits (121), Expect = 3.883e-6 Identity = 24/102 (23.53%), Postives = 46/102 (45.10%), Query Frame = 2 Query: 365 TYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNK---------------ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 + FVP C + GSY+ +QC C+C ++ G+ ++ + C E+ + + + C G + P+QC ++ C+CV+ G + G Sbjct: 615 SLFVPSCTAEGSYEDVQCFAGECWCVDARGRELAGSRARGGRPRCPTACEKQRERMQSLLGRQPAGSSVFVPSCTREGHFLPVQCFSSDCYCVDADGQPIPG 716
BLAST of Thyroglobulin vs. TrEMBL
Match: A0A1S3J5E7 (equistatin-like OS=Lingula unguis OX=7574 GN=LOC106170269 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.122e-11 Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = 2 Query: 377 PICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSN---CKCVLERDK-------NKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLIC 667 P CD+ G+Y QC+ +CFC N G R+ Y +F + C C + D+ K+ CK NG Y+ QC ++C+CV+ G ++ PV ++ V +L C Sbjct: 26 PTCDADGTYSAKQCKEASCFCVNKDGDRLGDYSARFWEAKDMTCNCARDEDEYQKKGLIGKMYICKENGNYEKYQCTGSVCYCVDEKGSKLESTPPVSISAVKTLNC 132
BLAST of Thyroglobulin vs. TrEMBL
Match: A0A1S3IF36 (uncharacterized protein LOC106163748 OS=Lingula unguis OX=7574 GN=LOC106163748 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 7.316e-9 Identity = 34/107 (31.78%), Postives = 53/107 (49.53%), Query Frame = 2 Query: 377 PICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLS---NCKCVLERDK-------NKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLIC 667 P CD+ G+Y QC +CFC N G R+ Y +F + C C + D+ K+ C NG Y+ QC ++C+CV+ G ++ PV ++ V +L C Sbjct: 124 PTCDADGTYSAKQCIEASCFCVNKDGDRLGDYSARFWEAKDMTCNCARDEDEYQKKGLIGKMYICNENGNYEKYQCTGSVCYCVDEKGSKLESTPPVSISAVKTLNC 230
BLAST of Thyroglobulin vs. TrEMBL
Match: A0A2T7PUN3 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_04128 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.599e-8 Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 2 Query: 371 FVPICDSFGS--YDPIQCRRDTCFCSNSLGKRISSYFDK--FNLSNCKCVLERD-------KNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQ 622 F+P CD+ + Y P+QC C+C +S G R+S Y + NC+C E D + +I C +G Y P +C + CFCVNR G +Q Sbjct: 40 FLPRCDAGNTALYSPLQCHGSVCYCVSSDGTRLSDYSNIPIGTPGNCECAREEDEFRKTGMRGQIFNCAPDGTYSPTRCTGSRCFCVNRDGTRMQ 134
BLAST of Thyroglobulin vs. TrEMBL
Match: B0WKC4 (Uncharacterized protein OS=Culex quinquefasciatus OX=7176 GN=6039563 PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 6.912e-8 Identity = 45/156 (28.85%), Postives = 70/156 (44.87%), Query Frame = 2 Query: 242 GCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDT----CFCSNSLGKRI--SSYFDKFNLSNCKCVLERD-------KNKILRCKSNGEYKPIQCANTMCFCVN-RSGIAVQGITPVRLAIVTSLIC 667 GC C L C G C + ++ C ++ + P CDS G + P+QCR D CFC +S G+RI S + + C C R ++ L C SNG ++P+QC +C+CV ++G + + V ++ T L C Sbjct: 63 GCGALSPCLPGLTCRSGSCVLD--SSSCLSAEHVPPE----VSWTPTCDSSGRFQPVQCRGDLLHGRCFCYSSTGRRIFGSEWRGRATDMTCACSRLRSDLEASGRQDVTLHCSSNGNFEPLQCDGGVCWCVEPKTGQPLPQVPAVLPSMWTKLPC 212
BLAST of Thyroglobulin vs. TrEMBL
Match: A0A1Q3FHF9 (Putative thyroglobulin type i repeat protein OS=Culex tarsalis OX=7177 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 1.056e-7 Identity = 46/156 (29.49%), Postives = 68/156 (43.59%), Query Frame = 2 Query: 245 CKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTY-FVPICDSFGSYDPIQCRRDT----CFCSNSLGKRI--SSYFDKFNLSNCKCVLERD-------KNKILRCKSNGEYKPIQCANTMCFCVN-RSGIAVQGITPVRLAIVTSLIC 667 C C L C C + N ++T P + P CDS G + P+QCR D CFC +S G+RI S + K C C R ++ L C SNG ++P+QC +C+CV ++G + + V ++ T L C Sbjct: 64 CNELSPCLPGLTCTNESCGLDSANC-------LATEHAPPEISWTPSCDSSGHFQPVQCRGDLLSGRCFCYSSTGRRIFGSEWRGKATDMTCACSRLRSDLEASGRQDVTLHCSSNGNFEPLQCDGGVCWCVEPKTGQPLPEVPAVLPSMWTKLPC 212
BLAST of Thyroglobulin vs. Ensembl Cavefish
Match: tg (thyroglobulin [Source:NCBI gene;Acc:103037495]) HSP 1 Score: 55.0694 bits (131), Expect = 2.938e-8 Identity = 32/137 (23.36%), Postives = 62/137 (45.26%), Query Frame = 2 Query: 308 PMNTKCYKNYNISTAKESPT-YFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNK---------------ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICP 670 P+ ++N+++ ++ SP+ ++P C G Y +QC+ C+C++S G+ + C E+++ I +C+ +GEY +QC CFC+++ G+ L +SL CP Sbjct: 603 PLFQAVFQNFDVCSSPASPSSLYLPQCTEDGQYQAVQCQGSECWCADSQGQEVMGSRSIGYRPRCPSRCEKERMMAIAVKASSSAGSEVFIPKCEEDGEYVSLQCLGKSCFCLDQRGVRYS-----TLGSGSSLQCP 734 HSP 2 Score: 51.9878 bits (123), Expect = 2.571e-7 Identity = 33/106 (31.13%), Postives = 47/106 (44.34%), Query Frame = 2 Query: 344 STAKESPTYFVPICDSFGSYDPIQCRRD-TCFCSNSLGKRISSYFDKFNLSNC--KCVLER-------DKNKILRCKSNGEYKPIQCANTM--CFCVNRSGIAVQG 625 S E +P C G Y +QC R C+C NS G I + C C L+R D + RC +GEY+P+QC + C+CV+ G+ + G Sbjct: 70 SVGSEQQNEHIPQCSEDGRYRYVQCNRGGECWCVNSDGTEIPGSRQNDTVVTCLTPCQLQRQRLLLSGDAGVVPRCLDSGEYEPVQCDGALGQCWCVDMEGMEIYG 175
BLAST of Thyroglobulin vs. Ensembl Sea Lamprey
Match: tg (thyroglobulin [Source:ZFIN;Acc:ZDB-GENE-030519-1]) HSP 1 Score: 47.7506 bits (112), Expect = 1.555e-6 Identity = 28/102 (27.45%), Postives = 44/102 (43.14%), Query Frame = 2 Query: 371 FVPIC-DSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLS-NCKCVLERDKNKIL---------------RCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 FV C + G+Y+P+QC C+C ++ G+ I+ C E ++ + L C G+Y+P+QC+ CFCV G V G Sbjct: 606 FVARCGEDGGAYEPVQCHGAACWCVDAHGREIAGTRAVGGAPPRCPSACEGERARALLARRGRPVGTPLFVPECDGAGDYRPVQCSGDRCFCVGAGGAEVPG 707
BLAST of Thyroglobulin vs. Ensembl Nematostella
Match: EDO40369 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7C0]) HSP 1 Score: 48.9062 bits (115), Expect = 3.536e-7 Identity = 35/122 (28.69%), Postives = 53/122 (43.44%), Query Frame = 2 Query: 317 TKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFD-------KFNLSNCK------CVLERD--KNKILRCKSNGEYKPIQC--ANTMCFCVNRSGIAVQG 625 T C + Y +T+ P F P C + GS++ +QC + C+C + G I LS C+ L R + I CKS+G Y+ +QC C+CV+ G+ V G Sbjct: 72 TPCQRRYQEATSSPVPGSFAPRCRADGSFEEVQCHKSQGYCWCVDQFGNEIPRTRSIKPVRCPSPILSPCQRRRLLGTALGRGNVEGYIPHCKSDGRYEEVQCHTGTKYCWCVDEKGVEVWG 193
BLAST of Thyroglobulin vs. Ensembl Nematostella
Match: EDO40364 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7B5]) HSP 1 Score: 46.595 bits (109), Expect = 1.899e-6 Identity = 42/151 (27.81%), Postives = 67/151 (44.37%), Query Frame = 2 Query: 284 VKGECSTNPMNTKCYKN--------YNISTAKESPT---YFVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFDKF---------NLSNCK------CVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIV 652 + G ST P+ KC K + A E+P+ FVP C + G ++ +QC T C+C ++ G I K +L+ C+ V + +C+S+G Y +QC +C+CV++ GI +QG RL I Sbjct: 54 IMGSRSTGPV--KCTKQGVPETECQSQVKQALETPSGKGRFVPRCKADGQFEEVQCNEWTGQCWCVDNSGIEIQGTRTKDFVSCPGQTNSLTVCQYKHQVSSVNAAPGAFVPQCRSDGGYDVVQCRGAVCYCVDKRGIEIQG---TRLPIA 199 HSP 2 Score: 46.2098 bits (108), Expect = 2.907e-6 Identity = 34/124 (27.42%), Postives = 55/124 (44.35%), Query Frame = 2 Query: 317 TKCYKNYN-ISTAKESPTYFVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFDKFNL-------------SNCKCVLERDKNK---ILRCKSNGEYKPIQC--ANTMCFCVNRSGIAVQG 625 T C K + + + P + P C G ++ +QC T C+C +S G+ I + S K LE K + RCK++G+++ +QC C+CV+ SGI +QG Sbjct: 3 TPCQKQKQALGSRRLIPDRYTPTCKPDGRFEEVQCNPATSACWCVDSDGQEIMGSRSTGPVKCTKQGVPETECQSQVKQALETPSGKGRFVPRCKADGQFEEVQCNEWTGQCWCVDNSGIEIQG 126
BLAST of Thyroglobulin vs. Ensembl Nematostella
Match: EDO40373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7C4]) HSP 1 Score: 45.0542 bits (105), Expect = 7.056e-6 Identity = 35/122 (28.69%), Postives = 53/122 (43.44%), Query Frame = 2 Query: 317 TKCYKNYNIS---TAKESPTYFVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFDK--------FNLSNCKCVLERDKNK---------ILRCKSNGEYKPIQCANTM--CFCVNRSG 610 T C K I+ T +P FVP C S G YD +QC T C+C + G I + + LS C+ +R + C S G+Y+ +QC ++ C+CV++ G Sbjct: 56 TMCQKERQIAIGWTGVAAPGSFVPKCKSSGDYDTVQCHGSTGFCWCVDDDGNEIPATRVRGRPMCGLLAGLSQCQQERQRHMGVLGIAPPGRFVPACTSTGQYERVQCHSSTGYCWCVDKFG 177
BLAST of Thyroglobulin vs. Ensembl Nematostella
Match: EDO40372 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7C3]) HSP 1 Score: 44.669 bits (104), Expect = 7.466e-6 Identity = 39/136 (28.68%), Postives = 60/136 (44.12%), Query Frame = 2 Query: 293 ECSTNPMNTKCYKN----YNISTAKESPTYFVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFDKFNLSNCK----CVLERDKNKIL-------------RCKSNGEYKPIQCA--NTMCFCVNRSGIAVQG 625 +CS T C K Y +S + + Y VP CD+ G Y+P+QC T C+C + G I + CK ER++ + L C+ +G Y+ +QC + C+CV+RSG + G Sbjct: 45 DCSARVGLTPCQKQRFNAYGVSESTPADRY-VPRCDASGGYEPVQCLSTTGHCWCVDKDGIEIRGTRRRGVRPVCKQGYNTPCERERYRALGWTGLRVTGLWVPDCRPDGSYESVQCHALSGYCWCVDRSGHELFG 179
BLAST of Thyroglobulin vs. Ensembl Nematostella
Match: EDO40371 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S7C2]) HSP 1 Score: 44.2838 bits (103), Expect = 9.184e-6 Identity = 31/107 (28.97%), Postives = 49/107 (45.79%), Query Frame = 2 Query: 371 FVPICDSFGSYDPIQCRRDT--CFCSNSLGKRISSYFDKFNLSNCK-----CVLERDKNKIL-------------RCKSNGEYKPIQCANT--MCFCVNRSGIAVQG 625 FVP C G+Y+ +QC+ T C+C ++ G + L C V ++D+ + L RC+S+G Y PIQC + C+CV+ G + G Sbjct: 78 FVPRCTLDGAYEDVQCQESTGECWCVDAQGSELDGTR-STELVTCHKHMSPSVCQQDRMQALAWSGRLVVGAFIPRCRSDGSYDPIQCHESPGQCWCVDVHGNELTG 183
BLAST of Thyroglobulin vs. Ensembl Medaka
Match: ENSORLT00000046650.1 (pep primary_assembly:ASM223467v1:16:31876438:31883319:-1 gene:ENSORLG00000030206.1 transcript:ENSORLT00000046650.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 46.595 bits (109), Expect = 3.498e-6 Identity = 33/115 (28.70%), Postives = 49/115 (42.61%), Query Frame = 2 Query: 347 TAKESPTYFVPICDSFGSYDPIQCRRD-TCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKIL-----------RCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVT 655 A E+ + FVP C+ GSY QC++ C+C + G+ + C +KN L +C +G + P+QC T C+CV G V G +L VT Sbjct: 49 AALETSSVFVPTCERGGSYSFTQCQQGGQCWCVDPSGREVPGTRQLGGPLACG-----EKNHPLIANMAAGLQRRQCGPDGSFAPLQCDVTSCWCVTEYGQEVVGTRTPQLTGVT 158
BLAST of Thyroglobulin vs. Planmine SMEST
Match: SMESG000017159.1 (SMESG000017159.1) HSP 1 Score: 312.768 bits (800), Expect = 1.281e-109 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 2 Query: 218 IFSTEFVHGCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK 676 IFSTEFVHGCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK Sbjct: 10 IFSTEFVHGCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK 162
BLAST of Thyroglobulin vs. Planmine SMEST
Match: SMESG000017159.1 (SMESG000017159.1) HSP 1 Score: 282.722 bits (722), Expect = 4.448e-98 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 2 Query: 260 MCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK 676 MCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK Sbjct: 1 MCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLICPEK 139
BLAST of Thyroglobulin vs. Planmine SMEST
Match: SMESG000017161.1 (SMESG000017161.1) HSP 1 Score: 105.531 bits (262), Expect = 4.255e-28 Identity = 57/149 (38.26%), Postives = 79/149 (53.02%), Query Frame = 2 Query: 242 GCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLER-------DKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLIC 667 GC +S+ C VCV G CS NP+ TKCY+ Y+ F+P C + G Y P+QC + C+CS+ GK+IS+YF+ SNCKC L++ I C NG Y+PIQC + C+CV+ G + G V + L C Sbjct: 18 GCNDSKGCTDLEVCVSGNCSKNPLTTKCYQEYDKVMKNLLFGSFIPCCKTNGIYCPVQCPTNICYCSSPDGKKISNYFNINENSNCKCGLDKYLYSLNMAVGIIFNCNENGSYRPIQCLGSSCYCVDAQGKKIPGTISVHIEKANELKC 166
BLAST of Thyroglobulin vs. Planmine SMEST
Match: SMESG000017039.1 (SMESG000017039.1) HSP 1 Score: 100.908 bits (250), Expect = 2.538e-26 Identity = 56/158 (35.44%), Postives = 82/158 (51.90%), Query Frame = 2 Query: 218 IFSTEFVHGCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCV---LERDKNK-----ILRCKSNGEYKPIQCANTMCFCVNRSGIAVQGITPVRLAIVTSLIC 667 I E GC++S C+ P VC+ G+C NP+ TKC++ Y + + T +P CDS G+Y P+QC+ C+CSN G I Y D S+CKC +E +N CK++G Y +QC T CFC + G+ + G V +L+C Sbjct: 10 ILLVEATRGCEDSFDCRPPKVCMSGKCYANPLTTKCFQIYGKAIKSMADT-LIPRCDSNGNYAPVQCQNGKCWCSNRDGITIHDYPDAKKKSHCKCARASIEFKQNSDGPITAFFCKTDGNYGDVQCKQTTCFCTDEDGVRMPGKATVDYEKRKTLLC 166
BLAST of Thyroglobulin vs. Planmine SMEST
Match: SMESG000017157.1 (SMESG000017157.1) HSP 1 Score: 93.2041 bits (230), Expect = 1.973e-23 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 242 GCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNISTAKESPTYFVPICDSFGSYDPIQCRRDTCFCSNSLGKRISSYFDKFNLSNCKCVLERDKNKILRCKSNGEYKPIQCANTMCFCVNRSGIAVQG 625 GC+ S CK PLVCV+G C NP++T CYK+ + + F+P CDS G Y IQC C+C + G R+ + ++ S CKC D + +C+ +G +K C + C+C+N +G V G Sbjct: 18 GCEESSDCKQPLVCVEGICGLNPLSTTCYKDLDSAIKSILIGRFMPRCDSKGLYFRIQCTNKLCYCYHREGYRLQMFSQVYDNSKCKCAQLVDYSTFNKCRKDGSFKSYWCNTSQCWCINENGKIVSG 145 The following BLAST results are available for this feature:
BLAST of Thyroglobulin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Thyroglobulin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Thyroglobulin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Thyroglobulin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Thyroglobulin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Thyroglobulin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Thyroglobulin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Thyroglobulin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Thyroglobulin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Thyroglobulin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Thyroglobulin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Thyroglobulin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Thyroglobulin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Thyroglobulin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30015030 ID=SMED30015030|Name=Thyroglobulin|organism=Schmidtea mediterranea sexual|type=transcript|length=747bpback to top protein sequence of SMED30015030-orf-1 >SMED30015030-orf-1 ID=SMED30015030-orf-1|Name=SMED30015030-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=163bp MSVLLVLLVIFSTEFVHGCKNSRMCKTPLVCVKGECSTNPMNTKCYKNYNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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