Low density lipoprotein-receptor, class A,domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014866 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 10
Homology
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Match: F58H1.7 (NMDA receptor auxiliary protein [Source:UniProtKB/TrEMBL;Acc:G5EEF9]) HSP 1 Score: 77.0258 bits (188), Expect = 2.500e-17 Identity = 49/184 (26.63%), Postives = 88/184 (47.83%), Query Frame = 3 Query: 123 IVFVYVYATEC-FNIFE----KRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPA----IIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGF 620 IV + T C F+I + KR + + CP P+ C + G C+ ++CDG PDC ++YDE+ ++C A RPP ++ ++ + F+ +F K + +A L ++PT D FA + L+ + +++ +VME + +G +L E D ++ +TGF Sbjct: 5 IVLMCAIHTACSFSIRDIINGKRGADAATPCPTWHPFACPS-GECVPIKYLCDGSPDCSDEYDENKSMCTAATRPPVEETQAFLKALMSAHGKDFLVKVFGPKAKAELSGMGGVDKVAVALSQTPTADLFASEMKLDDGETQHMLEVMEGILNGSTDELTSNEA-----ADFRFFVQKLQETGF 182
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Match: F58H1.7 (NMDA receptor auxiliary protein [Source:UniProtKB/TrEMBL;Acc:G5EEF9]) HSP 1 Score: 73.559 bits (179), Expect = 6.798e-16 Identity = 41/154 (26.62%), Postives = 75/154 (48.70%), Query Frame = 3 Query: 198 CPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPA----IIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGF 620 CP P+ C + G C+ ++CDG PDC ++YDE+ ++C A RPP ++ ++ + F+ +F K + +A L ++PT D FA + L+ + +++ +VME + +G +L E D ++ +TGF Sbjct: 37 CPTWHPFACPS-GECVPIKYLCDGSPDCSDEYDENKSMCTAATRPPVEETQAFLKALMSAHGKDFLVKVFGPKAKAELSGMGGVDKVAVALSQTPTADLFASEMKLDDGETQHMLEVMEGILNGSTDELTSNEA-----ADFRFFVQKLQETGF 184
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0083762) HSP 1 Score: 88.5817 bits (218), Expect = 3.121e-21 Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 183 RSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPP----AIIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 + C P+ C GNC+S ++CDG PDC + YDED LC A RPP A ++ I ++ +F K ++ +A L ES TI+DF ++ L + +++R V AV +G L + + + D+ ++V TGF+ Sbjct: 59 KRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKVAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0083763) HSP 1 Score: 88.5817 bits (218), Expect = 3.121e-21 Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 183 RSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPP----AIIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 + C P+ C GNC+S ++CDG PDC + YDED LC A RPP A ++ I ++ +F K ++ +A L ES TI+DF ++ L + +++R V AV +G L + + + D+ ++V TGF+ Sbjct: 59 KRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKVAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Match: CG31221 (gene:FBgn0051221 transcript:FBtr0330030) HSP 1 Score: 88.5817 bits (218), Expect = 7.830e-21 Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 183 RSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPP----AIIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 + C P+ C GNC+S ++CDG PDC + YDED LC A RPP A ++ I ++ +F K ++ +A L ES TI+DF ++ L + +++R V AV +G L + + + D+ ++V TGF+ Sbjct: 59 KRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMRLCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKVAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDSELGDVKFFLEKLVNTGFL 218
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|P85831|PROH4_APIME (Prohormone-4 OS=Apis mellifera OX=7460 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.844e-21 Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 183 RSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPP----AIIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 RSG+ C P+ C C+S ++CDG PDC + YDED+ LC A RPP A ++ + ++ +F K + +A L ES TI+DF ++ L + +++R V AV +G L + + + D+ ++VKTGF+ Sbjct: 42 RSGDACRPYEPFKCPGDDTCISIQYLCDGAPDCQDGYDEDSRLCTAAKRPPVEETASFLQSLLASHGPNYLEKLFGTKARDTLKPLGGVNTVAIALSESQTIEDFGAALHLLRTDLEHLRSVFMAVENGDLGMLKSIGIKDSELGDVKFFLEKLVKTGFL 201
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|E2AX35|PROH4_CAMFO (IDLSRF-like peptide OS=Camponotus floridanus OX=104421 GN=EAG_01737 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.500e-20 Identity = 47/175 (26.86%), Postives = 84/175 (48.00%), Query Frame = 3 Query: 138 VYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPP----AIIMEQFITKWKEWFIPNIFSDKP---------IKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 + A + + ++ + C P+ C G C+S ++CDG PDC + YDED+ LC A RPP A ++ + ++ +F +K ++ +A L ES TI+DF ++ L + +++R V AV +G L + + + D+ ++VKTGF+ Sbjct: 26 IMAIDLSRFYGHINTKRSDACHPYEPFKCPGDGLCISIQYLCDGAPDCQDGYDEDSRLCTAAKRPPVEETATFLQSLLASHGPNYLEKLFGNKARDTLKPLGGVEKVAIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSIGIKDSELGDVKFFLEKLVKTGFL 200
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Match: sp|A0A0F7YYX3|CPROH_CONVC (Neuropeptide prohormone-4 OS=Conus victoriae OX=319920 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.018e-18 Identity = 42/145 (28.97%), Postives = 71/145 (48.97%), Query Frame = 3 Query: 198 CPE----SAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGF 620 CPE ++P+ C+ CL +C+G DC DED ALC A RP ++ +F+ ++W +PN+F+D ++A L E+ ++ D + L +N+R G L+ + MP+RAW ++ L + G Sbjct: 47 CPEDCDIASPFKCEESPTCLRLFQVCNGRWDCEHGSDEDNALCAAVLRPLECMIWEFLEGQRDWILPNLFNDANTDLVAHALHEAYSMGDLQSYLNLTDQNIENIRNSTRGAIVGDPRPLMALGMPDRAWPEVMYLLKELYNLGL 191
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A158QJB1 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS11424 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.121e-54 Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 3 Query: 168 EKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKN 629 E R N CPE+ PWPC+T CL+FDFICDGE DC + YDED LCIAK RPP M QFITK+ +W IP+I + I+A +L+ESPTI+D+A + LNK+Q+ N+ V+E V +++ L+L+ MP AW++LY LF+RI+ +GF+KN Sbjct: 1 EHRNVTLANTCPETRPWPCRTGHRCLAFDFICDGEKDCADGYDEDEELCIAKQRPPVEYMVQFITKYHDWLIPDILGEGSPFILAKMLVESPTIEDYASAAHLNKEQFSNLYSVLEGVYLRKEMQLVLLGMPTGAWSELYYLFNRIITSGFVKN 154
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A158QEM3 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7631 PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.538e-52 Identity = 75/154 (48.70%), Postives = 108/154 (70.13%), Query Frame = 3 Query: 168 EKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKN 629 E R N CPE+ PWPC+T CL+FDFICDGE DC + YDE+ LCIAK RPP + QFITK+ +W IP+I + ++A +L++SPTI+D+A +V LNK+Q+ N+ +E V +++ L+L+ MP AW++LY LF+RI+ +GF+KN Sbjct: 1 EHRNITLANTCPETRPWPCRTGNRCLAFDFICDGEKDCADGYDENEELCIAKQRPPVEYLVQFITKYHDWLIPDILGEGSPLVLAKMLVQSPTIEDYASAVHLNKEQFSNLYSALEGVYLRKEMQLVLLGMPLGAWSELYYLFNRIITSGFVKN 154
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A564Z7Z7 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS12934 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 4.203e-52 Identity = 75/154 (48.70%), Postives = 108/154 (70.13%), Query Frame = 3 Query: 168 EKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKN 629 E R N CPE+ PWPC+T CL+FDFICDGE DC + YDE+ LCIAK RPP + QFITK+ +W IP+I + ++A +L++SPTI+D+A +V LNK+Q+ N+ +E V +++ L+L+ MP AW++LY LF+RI+ +GF+KN Sbjct: 37 EHRNITLANTCPETRPWPCRTGNRCLAFDFICDGEKDCADGYDENEELCIAKQRPPVEYLVQFITKYHDWLIPDILGEGSPLVLAKMLVQSPTIEDYASAVHLNKEQFSNLYSALEGVYLRKEMQLVLLGMPLGAWSELYYLFNRIITSGFVKN 190
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A094ZWF8 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_05853 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 3.011e-50 Identity = 76/167 (45.51%), Postives = 112/167 (67.07%), Query Frame = 3 Query: 129 FVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKN 629 F+ ++AT ++I+ + GN CPES PWPC+TP CLSFDFICDGEPDCP++YDED +C AK RP + FI +++ W +P + +A L+ES T+ D+A++ LN+ Q KN+ K+ME V+ G++++L L+ MP AW++LY LF RI +GF+ N Sbjct: 8 FMKLFATVQYSIYFIQAVERGNDCPESQPWPCRTPRICLSFDFICDGEPDCPDEYDEDPEMCTAKLRPAQEHLAGFIHRYQNWLVPKFLGYGTPEELAAKLVESKTVSDYARAAKLNETQLKNLIKLMEGVKSGKEMELFLLGMPLGAWSELYTLFHRIYISGFLDN 174
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Match: A0A267EU33 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig004733g1 PE=4 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.840e-50 Identity = 78/157 (49.68%), Postives = 105/157 (66.88%), Query Frame = 3 Query: 153 CFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 C+ ++ S GN CP++APWPCK+ G CLSF FICDG DC + YDED ALC AKDRP +II++ FI ++ W IPNI + + +A L E + D+A +VGLNK Q + + VME RDGR +DL+L MPE A+ + Y LF RIV++GF+ Sbjct: 23 CYRQLVRKGSALGNDCPKTAPWPCKS-GQCLSFSFICDGRQDCEDGYDEDTALCTAKDRPASIILKSFIARFHNWLIPNILGEGTPEELAKQLTEQLNVRDYASAVGLNKQQLRKLVLVMEYARDGRILDLILDGMPEEAYREAYALFGRIVESGFL 178
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000033681.1 (SMESG000033681.1) HSP 1 Score: 373.244 bits (957), Expect = 2.185e-133 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 3 Query: 96 MSGYSYFILIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKNNA 635 MSGYSYFILIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKNNA Sbjct: 1 MSGYSYFILIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIKNNA 180
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000021406.1 (SMESG000021406.1) HSP 1 Score: 188.734 bits (478), Expect = 1.335e-60 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 3 Query: 171 KRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIK 626 K SGNGCPES PWPCKTPG CLSFDFICDGEPDCP+KYDED +LC AK+RPP ++++F+ K++ W IP IAT LIES ++++ + L + Q K++ ++ AV++GRQI+L++ MP RAW +LYLLF RI +GF+K Sbjct: 26 KTAKSSGNGCPESQPWPCKTPGQCLSFDFICDGEPDCPDKYDEDQSLCTAKNRPPFEVLDKFLLKYESWLIPKYLGQGTHTQIATYLIESTNAEEYSNKMKLTQQQKKDLMDLLTAVKEGRQIELIMEGMPPRAWNELYLLFGRIASSGFLK 177
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000076971.1 (SMESG000076971.1) HSP 1 Score: 189.119 bits (479), Expect = 1.447e-60 Identity = 89/168 (52.98%), Postives = 119/168 (70.83%), Query Frame = 3 Query: 120 LIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 +I+ V++ + I + + GN CPES PWPCK+ G CLSFDFICD E DCP+KYDED ALCIAK+RPP +++EQF+ KWK+ IP +F + K +A L+ES TI D+ K+ L + Q+KN KVMEAVR RQID L+M +P+RAW D+Y LF R +K+GF+ Sbjct: 13 MILNVHIIILRAYEIEKHMKRNPGNVCPESKPWPCKS-GLCLSFDFICDEEFDCPDKYDEDPALCIAKNRPPVVLLEQFLMKWKDSLIPKVFGNGLPKDLADKLVESLTILDYKKAAHLTESQFKNFYKVMEAVRKNRQIDWLMMGLPDRAWNDMYNLFRRFLKSGFL 179
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000076971.1 (SMESG000076971.1) HSP 1 Score: 188.348 bits (477), Expect = 1.542e-60 Identity = 89/168 (52.98%), Postives = 119/168 (70.83%), Query Frame = 3 Query: 120 LIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFI 623 +I+ V++ + I + + GN CPES PWPCK+ G CLSFDFICD E DCP+KYDED ALCIAK+RPP +++EQF+ KWK+ IP +F + K +A L+ES TI D+ K+ L + Q+KN KVMEAVR RQID L+M +P+RAW D+Y LF R +K+GF+ Sbjct: 1 MILNVHIIILRAYEIEKHMKRNPGNVCPESKPWPCKS-GLCLSFDFICDEEFDCPDKYDEDPALCIAKNRPPVVLLEQFLMKWKDSLIPKVFGNGLPKDLADKLVESLTILDYKKAAHLTESQFKNFYKVMEAVRKNRQIDWLMMGLPDRAWNDMYNLFRRFLKSGFL 167
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Match: SMESG000021406.1 (SMESG000021406.1) HSP 1 Score: 188.348 bits (477), Expect = 1.834e-60 Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 3 Query: 171 KRESRSGNGCPESAPWPCKTPGNCLSFDFICDGEPDCPEKYDEDAALCIAKDRPPAIIMEQFITKWKEWFIPNIFSDKPIKIIATLLIESPTIDDFAKSVGLNKDQYKNVRKVMEAVRDGRQIDLLLMEMPERAWTDLYLLFSRIVKTGFIK 626 K SGNGCPES PWPCKTPG CLSFDFICDGEPDCP+KYDED +LC AK+RPP ++++F+ K++ W IP IAT LIES ++++ + L + Q K++ ++ AV++GRQI+L++ MP RAW +LYLLF RI +GF+K Sbjct: 23 KTAKSSGNGCPESQPWPCKTPGQCLSFDFICDGEPDCPDKYDEDQSLCTAKNRPPFEVLDKFLLKYESWLIPKYLGQGTHTQIATYLIESTNAEEYSNKMKLTQQQKKDLMDLLTAVKEGRQIELIMEGMPPRAWNELYLLFGRIASSGFLK 174 The following BLAST results are available for this feature:
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Low density lipoprotein-receptor, class A,domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014866 ID=SMED30014866|Name=Low density lipoprotein-receptor, class A,domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=714bpback to top protein sequence of SMED30014866-orf-1 >SMED30014866-orf-1 ID=SMED30014866-orf-1|Name=SMED30014866-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=181bp MSGYSYFILIVFVYVYATECFNIFEKRESRSGNGCPESAPWPCKTPGNCLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|