Chromatin licensing and DNA replication factor 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014686 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 14
Homology
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Human
Match: CDT1 (chromatin licensing and DNA replication factor 1 [Source:HGNC Symbol;Acc:HGNC:24576]) HSP 1 Score: 59.6918 bits (143), Expect = 1.319e-8 Identity = 44/180 (24.44%), Postives = 86/180 (47.78%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPV-NSPFSESHLGKIITIYHEAYLIKWER-LPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELI--NDYLLNESWHCKFNIDLHVELVDPTPMPGRP 1589 L + + L E+F +D +V ++ + E +++ + + F E ++G+I T+Y +Y + ER +P+ +TI+P L + D + +L +RR IF ++ +EHV ++ FL + ++P ++ D L WH +FN+D V ++P +P P Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEA--------DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLAS--LSPAMVVPEDQLTR--WHPRFNVD-EVPDIEPAALPQPP 352
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Fly
Match: dup (gene:FBgn0000996 transcript:FBtr0087387) HSP 1 Score: 56.6102 bits (135), Expect = 6.804e-8 Identity = 63/234 (26.92%), Postives = 102/234 (43.59%), Query Frame = 3 Query: 297 NSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGM-NHDFNERIFRQILNIFPESYFYE------FNSTPIKLAKYFREQLKLVPNLSFGPAVDCS--PRKLEK-----CLSVAQ--------ITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLI---KVQEWHCKFDLENCVE-EIQPVFLDRNF-KYPIKQTIIKKPESEKVFRNIFKVPT 917 +S ++PLP ++ LLD+F LD V + +++ ++ ++ M +F E QI +I+P+++ + F S + A YF QL + PN+ P S P+ K L+ AQ +T R Q Q+ LL + HD FL + +I + WH +FDLE+C E E+ P+ N KY + I+ RN+F T Sbjct: 310 SSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKTRNFGS--VSKADYF--QLIIAPNVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRFQSLLLDRAMRAHDQFLR-------SQDPPIIIEKALTRWHPQFDLESCPEVELSPLPQPPNVEKYSSAKDIL------STARNLFNCAT 526
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Fly
Match: dup (gene:FBgn0000996 transcript:FBtr0339999) HSP 1 Score: 56.6102 bits (135), Expect = 6.804e-8 Identity = 63/234 (26.92%), Postives = 102/234 (43.59%), Query Frame = 3 Query: 297 NSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGM-NHDFNERIFRQILNIFPESYFYE------FNSTPIKLAKYFREQLKLVPNLSFGPAVDCS--PRKLEK-----CLSVAQ--------ITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLI---KVQEWHCKFDLENCVE-EIQPVFLDRNF-KYPIKQTIIKKPESEKVFRNIFKVPT 917 +S ++PLP ++ LLD+F LD V + +++ ++ ++ M +F E QI +I+P+++ + F S + A YF QL + PN+ P S P+ K L+ AQ +T R Q Q+ LL + HD FL + +I + WH +FDLE+C E E+ P+ N KY + I+ RN+F T Sbjct: 310 SSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKTRNFGS--VSKADYF--QLIIAPNVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRFQSLLLDRAMRAHDQFLR-------SQDPPIIIEKALTRWHPQFDLESCPEVELSPLPQPPNVEKYSSAKDIL------STARNLFNCAT 526
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Xenopus
Match: CDT1 (chromatin licensing and DNA replication factor 1 [Source:NCBI gene;Acc:100379812]) HSP 1 Score: 52.7582 bits (125), Expect = 1.771e-6 Identity = 56/219 (25.57%), Postives = 99/219 (45.21%), Query Frame = 3 Query: 321 LPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKG-MNHDFNERIFRQILNIFPESYFY-EFNSTP-----IKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLENCVEEIQPVFL---DRNFKYPIKQTIIKK------PESEKVFRNI-FKVPTNSG 926 LP +KVL ++F S+D V L + +++ +++ + ++ M F +R QI ++P +Y Y + + P +K Y QL + P + G ++ P LS + + R+Q L IVKQ H +FL +N K+ WH +F+++ V ++ P L + K Q ++ K P+ EK N+ K N+G Sbjct: 211 LPYKYKVLAEMFRSMDTIVGMLFNRSETITFSKVKQGVQDMMRKQFEQRNVGQIKTVYPTAYKYRQEKNIPTFKDGVKKTDY---QLTIDPLIDEGDKLNGRPH-----LSASSLLQRRQLFHRSLTSIVKQHHKVFL---ASLNPPMVVPDDKLTRWHPRFNVDE-VPDVMPSELPLPPQVEKLTTAQEVLSKARGMITPKMEKALANLALKTAENAG 417
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Xenopus
Match: CDT1 (chromatin licensing and DNA replication factor 1 [Source:NCBI gene;Acc:100379812]) HSP 1 Score: 52.7582 bits (125), Expect = 2.045e-6 Identity = 56/219 (25.57%), Postives = 99/219 (45.21%), Query Frame = 3 Query: 321 LPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKG-MNHDFNERIFRQILNIFPESYFY-EFNSTP-----IKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLENCVEEIQPVFL---DRNFKYPIKQTIIKK------PESEKVFRNI-FKVPTNSG 926 LP +KVL ++F S+D V L + +++ +++ + ++ M F +R QI ++P +Y Y + + P +K Y QL + P + G ++ P LS + + R+Q L IVKQ H +FL +N K+ WH +F+++ V ++ P L + K Q ++ K P+ EK N+ K N+G Sbjct: 258 LPYKYKVLAEMFRSMDTIVGMLFNRSETITFSKVKQGVQDMMRKQFEQRNVGQIKTVYPTAYKYRQEKNIPTFKDGVKKTDY---QLTIDPLIDEGDKLNGRPH-----LSASSLLQRRQLFHRSLTSIVKQHHKVFL---ASLNPPMVVPDDKLTRWHPRFNVDE-VPDVMPSELPLPPQVEKLTTAQEVLSKARGMITPKMEKALANLALKTAENAG 464
BLAST of Chromatin licensing and DNA replication factor 1 vs. UniProt/SwissProt
Match: sp|Q9H211|CDT1_HUMAN (DNA replication factor Cdt1 OS=Homo sapiens OX=9606 GN=CDT1 PE=1 SV=3) HSP 1 Score: 59.6918 bits (143), Expect = 6.335e-8 Identity = 44/180 (24.44%), Postives = 86/180 (47.78%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPV-NSPFSESHLGKIITIYHEAYLIKWER-LPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELI--NDYLLNESWHCKFNIDLHVELVDPTPMPGRP 1589 L + + L E+F +D +V ++ + E +++ + + F E ++G+I T+Y +Y + ER +P+ +TI+P L + D + +L +RR IF ++ +EHV ++ FL + ++P ++ D L WH +FN+D V ++P +P P Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEA--------DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLAS--LSPAMVVPEDQLTR--WHPRFNVD-EVPDIEPAALPQPP 352
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Match: A0A0X3PKA8 (DNA replication factor Cdt1 (Fragment) OS=Schistocephalus solidus OX=70667 GN=CDT1 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 7.994e-20 Identity = 89/365 (24.38%), Postives = 165/365 (45.21%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSP-VNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPE--LINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYS--------TNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAM-----------------VSKLRDLVALLYTEFKAVQYKPLALSYLSN--IASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVL 2066 L H+ TL E F D VV ++ + E+C ++ A+ V S F+E+ + + T+Y ++Y ++++ + P + + PNLR+D T+ A SP KG L F +L +RR F + I V ++R FL+NK E L D + WH F +D V + TP+P +P+ + ++TS S+ + + +F ++IC R+S T + + + + K N +K ++ L + AM +S L + ++ E +A+ KP+ L+ ++ S + + + + LI L+P W+E++ P L + + + DV+ Sbjct: 153 LPSHMHTLLEFFRACDLVVSVLHNRSEVCSFDKVKLAVQELVRSDFTEAIVSQFATVYPDSYSFRYDKQLDKVTKLPTSSYVLILIPNLRSDGTQMARDSPSKGHLVFTGNRLIQRRHHFQKSLIARVRRAHREFLVNKLSISESDLPPDSPIKR-WHPAFPLDTAVPTIPSTPLPPKPDANES--KITSASEAVAAFRSRALFR-EAEICERFSPHPQDAKKTYKSVVPSPSQASGSLTKSNAVALKGISESLLARVREREKAMQFSLLTRSPISEKQRLALSCLPTTITQVWRELRALSGKPVPLATVATRLAQSSETGLSQEAALYRIDELISLMPDWLEKVAWAKPHLRLKDMDRPLKDVI 513
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Match: A0A183TKL1 (DNA replication factor Cdt1 OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS17009 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 9.586e-20 Identity = 89/365 (24.38%), Postives = 165/365 (45.21%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSP-VNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPE--LINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYS--------TNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAM-----------------VSKLRDLVALLYTEFKAVQYKPLALSYLSN--IASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVL 2066 L H+ TL E F D VV ++ + E+C ++ A+ V S F+E+ + + T+Y ++Y ++++ + P + + PNLR+D T+ A SP KG L F +L +RR F + I V ++R FL+NK E L D + WH F +D V + TP+P +P+ + ++TS S+ + + +F ++IC R+S T + + + + K N +K ++ L + AM +S L + ++ E +A+ KP+ L+ ++ S + + + + LI L+P W+E++ P L + + + DV+ Sbjct: 175 LPSHMHTLLEFFRACDLVVSVLHNRSEVCSFDKVKLAVQELVRSDFTEAIVSQFATVYPDSYSFRYDKQLDKVTKLPTSSYVLILIPNLRSDGTQMARDSPSKGHLVFTGNRLIQRRHHFQKSLIARVRRAHREFLVNKLSISESDLPPDSPIKR-WHPAFPLDTAVPTIPSTPLPPKPDANES--KITSASEAVAAFRSRALFR-EAEICERFSPHPQDAKKTYKSVVPSPSQASGSLTKSNAVALKGISESLLARVREREKAMQFSLLTRSPISEKQRLALSCLPTTITQVWRELRALSGKPVPLATVATRLAQSSETGLSQEAALYRIDELISLMPDWLEKVAWAKPHLRLKDMDRPLKDVI 535
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Match: A0A5J4NS12 (Chromatin licensing and DNA replication factor 1 OS=Paragonimus westermani OX=34504 GN=DEA37_0005660 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 4.821e-18 Identity = 90/360 (25.00%), Postives = 156/360 (43.33%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPV-NSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCI--TPELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFD----CGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAMVS---------------KLRDLVALLYTEFKAVQYKPLALSYLSNIASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVLSAI 2075 L + L ELF D VV ++ + E+C ++ A+ V F E H+G+ +TIY YL+++E+ + +P + + PNLR D T+ SP KG L F +L +RR F + HV ++R FL K + L ND L WH KF ++ V + PTP+P RP T++ ++TS + + + +F C + LR+ P I + K +P + +++A+ + L+ + L + Q L + SN S+ + D+L L + W+E+L+ P L + +L I +V++++ Sbjct: 137 LPHDFRVLLELFRSCDTVVSMLHNRSEICGFDKLKPAVQEVVRRNFEEMHVGQFLTIYPMVYLLRFEKQLDKYTRRPSGNYVLVLSPNLRTDGTQIGHDSPSKGHLVFTGTRLIQRRNRFHRLLLGHVFRAHREFLHTKLGIDSTGLPNDTELRR-WHPKFCLESMVPPIQPTPLPIRPSATEE--KITSAKDAVRAFQARALFREADICQNVALLRHD-----------PMPTIP--SPTKASACSPRKPTVQSASSIALFTSSAASVPPSSPSVACSLKGVSETLLAKQLINQNNELLMRKNSNFLLDSIRYYSDVVADHLKVLQEFCSTWLEKLDWASPHLRLKNPDLPIGEVIASV 480
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Match: A0A564ZB75 (CDT1 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS14507 PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.061e-17 Identity = 87/368 (23.64%), Postives = 163/368 (44.29%), Query Frame = 3 Query: 1059 RLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNS-PFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIK-----------PNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNK--CITPELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMY---------------KIMKKKN---VFDCGSKICLRYSTNS---------ANIDCKALPQSMIDKVNDNKMKRLAPDL--HVKKGNNNVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSN--IASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQL 2027 RL FH++ LFELF + ++ ++ + E+C +I A+ V+ F++ +G+ + +Y AY +++ K+ID K PNLR D T+ A SP KG L F +L +RR IF + V ++++FL+++ +L +D L WH F +D V V+P +P P + D K +++ + KI K SK L S +S +N++ K + S++ KV D + K+++ L + + A + L + +++ + +P+ ++ +++ + S + L L+ L+P W+E++E P L Sbjct: 212 RLPFHMERLFELFRTCETIISTLHNRSEICSFDKIKPAVQEVSRCDFTDKTVGQFVALYPSAYSFRYD-----------KQIDRITKLQLCSYTLVFIPNLRTDGTQMATDSPMKGHLIFTGTRLIQRRHIFYNALLNRVKDAHKKFLISRFNLSESDLPDDTGLRR-WHPAFALDTAVPEVEPGALPPHPSDGSDTKIISARDAVVAFRARALFREAKVCEKIAAAKGELPATTSRSKSGLEDSPDSGVSSPVKKPSNVELKGISASLLAKVRD-REKQMSLTLLRQLAATPSEKAAFAALPATITQIWSALRGGSGRPVPITQVTSRLVQSSGSGLSPEEANSRLENLLTLMPNWVEKVEWARPHL 566
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Match: A0A0R3U8Z6 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS3383 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.497e-17 Identity = 63/223 (28.25%), Postives = 108/223 (48.43%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPV-NSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPE--LINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDC 1721 L +H++ L ELF + +V ++ + E+C +I A+ V F+E +GK +Y +AY +++ + + + + PNLR DNT+ A SP KG L F +L +RR IF + + V ++R FL+++ E L D L WH F +D V V+P P+P RP + +TS + + + +F + +C + T + C Sbjct: 236 LPYHMERLLELFRTCETIVSTLHNRSEVCSFDKIKPAVQEVVRCEFTEETVGKFAAVYPQAYKFRYDNQLDKLTKLVLSTYTLVLVPNLRTDNTQMARDSPSKGHLVFTGTRLIQRRHIFHKSLLARVLKAHRAFLISRLGVSESDLPGDSALRR-WHPSFALDTAVPEVEPAPLPPRPASSGRDARITSAREAVAAFRARALFR-EANVCEKLVTMPSTSTC 456
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Cavefish
Match: cdt1 (chromatin licensing and DNA replication factor 1 [Source:ZFIN;Acc:ZDB-GENE-070111-1]) HSP 1 Score: 62.3882 bits (150), Expect = 1.239e-9 Identity = 71/337 (21.07%), Postives = 148/337 (43.92%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPV-NSPFSESHLGKIITIYHEAYLIKWER-LPSGNSTKPVKKIDITIKPNLRND-NTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFL--LNKCITPELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSAN---------IDCKALPQSMIDKVNDNKMKRL----APDLHVKKGNN-----NVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSN--IASVSLAVDENYFIDYLCYLIKLVPGWI 1997 L + K L E+F +D +V ++ + E +++ + + + F E+H+G+I T+Y AY + E+ +P+ ++T +T++P + + N ++S +L +RR +F + +E V ++ FL LN + E+ +D + WH +F++D V + P +P +P +T+ + + + + + L+ + S ++ A S + V+ + ++R+ A L V N + M+S+L +L +L F A + L + N +AS ++ +L L +L P W+ Sbjct: 310 LPYKYKLLAEMFRSMDTIVGMLFNRSETVTFAKVKQGVQDMMHKRFEEAHIGQIKTVYPSAYTFRQEKNIPNFSTTAKKSAYQLTVEPVIEEETNGVRPVLS---------ATRLLDRRRMFHQNLVEIVKGHHKVFLAGLNPLV--EVPDDKITR--WHPRFSVD-EVPNIQPGDLP-QPPQTEKLTTAQEVLDRARALMTPKMEKALANMALKTAEASCAKEPEPPAKPVETPAQTPSALKGVSQSLLERIRAKEAQKLQVAMTRNPEQEERLGMMSRLPELARILRNVFVAEKKPALIMEIACNRVVASYRSSLSSGEMEKHLRLLAELAPEWL 631
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Medaka
Match: cdt1 (chromatin licensing and DNA replication factor 1 [Source:NCBI gene;Acc:101175588]) HSP 1 Score: 69.707 bits (169), Expect = 5.752e-12 Identity = 73/331 (22.05%), Postives = 150/331 (45.32%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVN-SPFSESHLGKIITIYHEAYLIKWER-LPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCKFNIDLHVEL-VDPTPMPGRPEETDDFKEMTSFSQMYKIMK-KKNVFDCGSKICLRYSTNSANIDCKALP------------QSMIDKVNDNKMKRLAPDLHVKKGN-NNVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSN--IASVSLAVDENYFIDYLCYLIKLVPGWI 1997 L H + L E+F +D VV +Y + E +++ + + F ++H+ +I T++ EAY +K E+ +P+ +S + +T++P + +D++++ + L L ERR +F + I V ++ FL + + P + + L WH +FN+DL + V P P P E +E+ +++ K +K + ++ R + S A P QS++D++ + ++L + + + M+S+L DL +L F A + L ++ + +AS + A+ ++ L +L W+ Sbjct: 173 LPLHFRLLAEMFRSMDTVVAMLYNRCETATFAKVQQGVQDMTHRRFEQNHVAQIRTVFPEAYALKQEKNIPTFSSGIKKGEYQLTVEPIIVSDHSQA------RPVLSASL--LLERRRVFHQNLISLVKQHHQEFL-SSLVPPVSVPEDRLTR-WHPRFNVDLVPAVPVSPLPEPPHRETLSTAQEVLDRARLLINPKMEKALISAAQQVQPRPAQGSVCAQKAAEPVAPVPGSLKGVSQSLLDRIRAKEAQKLQAVMTRDPAHEERLLMMSRLVDLARILRGIFVAEKKAALTMAAACSRMVASYASALTTGDMEKHVRLLAELAADWL 493 HSP 2 Score: 53.5286 bits (127), Expect = 5.817e-7 Identity = 41/165 (24.85%), Postives = 75/165 (45.45%), Query Frame = 3 Query: 321 LPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNH-DFNERIFRQILNIFPESYFYEFN------STPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLE 794 LPLHF++L ++F S+D V L + ++ ++ + ++ M H F + QI +FPE+Y + S+ IK +Y L+ P + + LS + + R++ L+ +VKQ H FL + E L + WH +F+++ Sbjct: 173 LPLHFRLLAEMFRSMDTVVAMLYNRCETATFAKVQQGVQDMTHRRFEQNHVAQIRTVFPEAYALKQEKNIPTFSSGIKKGEY---------QLTVEPIIVSDHSQARPVLSASLLLERRRVFHQNLISLVKQHHQEFLSSLVPPVSVPEDRLTR---WHPRFNVD 325
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Medaka
Match: cdt1 (chromatin licensing and DNA replication factor 1 [Source:NCBI gene;Acc:101175588]) HSP 1 Score: 66.6254 bits (161), Expect = 5.855e-11 Identity = 73/318 (22.96%), Postives = 142/318 (44.65%), Query Frame = 3 Query: 1062 LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVN-SPFSESHLGKIITIYHEAYLIKWER-LPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCKFNIDLHVEL-VDPTPMPGRPEETDDFKEMTSFSQMYKIMK-KKNVFDCGSKICLRYSTNSANIDCKALP------------QSMIDKVNDNKMKRLAPDLHVKKGN-NNVAMVSKLRDLVALL----YTEFKAVQYKPLALSYLSNIASVSLAVDENYF 1952 L H + L E+F +D VV +Y + E +++ + + F ++H+ +I T++ EAY +K E+ +P+ +S + +T++P + +D++++ + L L ERR +F + I V ++ FL + + P + + L WH +FN+DL + V P P P E +E+ +++ K +K + ++ R + S A P QS++D++ + ++L + + + M+S+L DL +L E KA A S + + +L EN F Sbjct: 223 LPLHFRLLAEMFRSMDTVVAMLYNRCETATFAKVQQGVQDMTHRRFEQNHVAQIRTVFPEAYALKQEKNIPTFSSGIKKGEYQLTVEPIIVSDHSQA------RPVLSASL--LLERRRVFHQNLISLVKQHHQEFL-SSLVPPVSVPEDRLTR-WHPRFNVDLVPAVPVSPLPEPPHRETLSTAQEVLDRARLLINPKMEKALISAAQQVQPRPAQGSVCAQKAAEPVAPVPGSLKGVSQSLLDRIRAKEAQKLQAVMTRDPAHEERLLMMSRLVDLARILRGIFVAEKKAALTMAAACSRMVASYASALTTGENRF 530 HSP 2 Score: 53.5286 bits (127), Expect = 6.626e-7 Identity = 41/165 (24.85%), Postives = 75/165 (45.45%), Query Frame = 3 Query: 321 LPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNH-DFNERIFRQILNIFPESYFYEFN------STPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLE 794 LPLHF++L ++F S+D V L + ++ ++ + ++ M H F + QI +FPE+Y + S+ IK +Y L+ P + + LS + + R++ L+ +VKQ H FL + E L + WH +F+++ Sbjct: 223 LPLHFRLLAEMFRSMDTVVAMLYNRCETATFAKVQQGVQDMTHRRFEQNHVAQIRTVFPEAYALKQEKNIPTFSSGIKKGEY---------QLTVEPIIVSDHSQARPVLSASLLLERRRVFHQNLISLVKQHHQEFLSSLVPPVSVPEDRLTR---WHPRFNVD 375
BLAST of Chromatin licensing and DNA replication factor 1 vs. Planmine SMEST
Match: SMESG000017018.1 (SMESG000017018.1) HSP 1 Score: 1239.94 bits (3207), Expect = 0.000e+0 Identity = 631/642 (98.29%), Postives = 636/642 (99.07%), Query Frame = 3 Query: 207 MMSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHXXXXXXXXXXXXXXXXXXXXXXXXEHSLKQRLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSNIASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVLSAILLSGVSSLGNSDFSNIDTP 2132 MMSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYIN KHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHITNVIPNNNRNINVTSR SSSSNREHSLKQ+LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHC+FNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVA+VSKLRDLVALLYTEFKAVQYKPLA SYLSNIASVSLAVDENYFIDYLCYL+KLVPGWIEEL GPPPQLSIDKSN SIDDVLSAILLSG SSLGNSDFSNI+TP Sbjct: 1 MMSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINDKHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHITNVIPNNNRNINVTSRKSSSSNREHSLKQKLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCEFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAVVSKLRDLVALLYTEFKAVQYKPLAFSYLSNIASVSLAVDENYFIDYLCYLMKLVPGWIEELGGPPPQLSIDKSNFSIDDVLSAILLSGASSLGNSDFSNINTP 642
BLAST of Chromatin licensing and DNA replication factor 1 vs. Planmine SMEST
Match: SMESG000017018.1 (SMESG000017018.1) HSP 1 Score: 1236.86 bits (3199), Expect = 0.000e+0 Identity = 630/641 (98.28%), Postives = 635/641 (99.06%), Query Frame = 3 Query: 210 MSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINGKHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHXXXXXXXXXXXXXXXXXXXXXXXXEHSLKQRLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSNIASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVLSAILLSGVSSLGNSDFSNIDTP 2132 MSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYIN KHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHITNVIPNNNRNINVTSR SSSSNREHSLKQ+LSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHC+FNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVA+VSKLRDLVALLYTEFKAVQYKPLA SYLSNIASVSLAVDENYFIDYLCYL+KLVPGWIEEL GPPPQLSIDKSN SIDDVLSAILLSG SSLGNSDFSNI+TP Sbjct: 1 MSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMNHDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYINDKHEGNLIKVQEWHCKFDLENCVEEIQPVFLDRNFKYPIKQTIIKKPESEKVFRNIFKVPTNSGNQISKDQLNKLIGHITNVIPNNNRNINVTSRKSSSSNREHSLKQKLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCITPELINDYLLNESWHCEFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKRLAPDLHVKKGNNNVAVVSKLRDLVALLYTEFKAVQYKPLAFSYLSNIASVSLAVDENYFIDYLCYLMKLVPGWIEELGGPPPQLSIDKSNFSIDDVLSAILLSGASSLGNSDFSNINTP 641
BLAST of Chromatin licensing and DNA replication factor 1 vs. Planmine SMEST
Match: SMESG000017019.1 (SMESG000017019.1) HSP 1 Score: 197.978 bits (502), Expect = 5.163e-53 Identity = 127/347 (36.60%), Postives = 191/347 (55.04%), Query Frame = 3 Query: 1041 EHSLKQRLSFHLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVNSPFSESHLGKIITIYHEAYLIKWERLPSGNSTKP-VKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLLNKCIT-PELINDYLLNESWHCKFNIDLHVELVDPTPMPGRPEETDDFKEMTSFSQMYKIMKKKNVFDCGSKICLRYSTNSANIDCKALPQSMIDKVNDNKMKR---LAPDLHVKKGNNNVAMVSKLRDLVALLYTEFKAVQYKPLALSYLSNIASVSLAVDENYFIDYLCYLIKLVPGWIEELEGPPPQLSIDKSNLSIDDVL 2066 E LKQ+L HLK L+E F +L+K+++D K +L V LS + F+E LGKI+ +Y EAY ++ + +PS N + KIDI I+PNL + N FL+FDF +K+R FLE C++ V SYR F+LNK I E + +++ E W+C FNI+L V+ V+P PMP + ++ + +FS M K KK FD L+ N +L QS+IDKV NK R +++ M SKL ++ ++ EFK KPL S L N+ SL ++E+ F +YL L ++VPGW+++L P+L+I ++S+D+VL Sbjct: 573 EFVLKQKLPAHLKVLYESFQELEKLIYDNRRKCATTYLRSAVEHLSN-HRQFTECQLGKILAVYPEAYSVRLQHVPSKNGLRSSTNKIDIAIRPNLESSN-----------FLKFDFATMKKRGQKFLENCVQIVVSSYREFILNKSIIHVENVEEHIRTEDWNCDFNIELDVKTVEPVPMPQKSQQKELENARLTFSVMKK-NKKPTEFDSSKVSPLKTGDNHR---LGSLSQSLIDKVRMNKANRSVITGAPATIRRN----FMASKLPEIATIIANEFKMFDNKPLERSQLVNLVCKSLQLNESSFSEYLDMLEQVVPGWVKDLNWAVPRLTIGTPDVSLDEVL 899 HSP 2 Score: 146.362 bits (368), Expect = 4.475e-36 Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 3 Query: 252 KGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFVSLDFAVNKLISSHQSLYINRITEVLKGMN-HDFNERIFRQILNIFPESYFYEFNSTPIKLAKYFREQLKLVPNLSFGPAVDCSPRKLEKCLSVAQITFRKQEMQARLLKIVKQKHDLFLEKIGYIN---GKHEGNLIKVQE-WHCKFDLENCVEEIQPVFLDRN 836 K KK + V + S +N + +P HFK +LD+FVSLD VNKL S+YI+++ EVLK MN ++F+ IF QIL IFPESY YEF+S P+K+ ++++E++K++PN +FG D P+K +K + Q+ R + LL V+++H+ FL IN K E + + + WH F+LE V+ I+P+ LDRN Sbjct: 33 KVKKTCATVSNNDSSYQSLNTILIPAHFKNILDIFVSLDVVVNKLSKQRTSIYIDKVAEVLKEMNINNFDIGIFGQILRIFPESYSYEFDSPPLKVTRHYKEKMKIIPNFNFGNKSDFIPKKSQKVFRLDQLVSRMAHLYECLLGKVQERHNEFL----LINKNLSKEEMEMFTLNKIWHEDFNLETSVQPIEPITLDRN 228 HSP 3 Score: 50.8322 bits (120), Expect = 3.329e-6 Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 1071 HLKTLFELFIKLDKVVHDIYCKGELCFLSRIVSALSPVN-SPFSESHLGKIITIYHEAYLIKWERLPSGNSTKPVKKIDITIKPNLRNDNTKSALMSPDKGFLRFDFVQLKERRLIFLERCIEHVNFSYRRFLL-NKCITPELINDYLLNESWHCKFNIDLHVELVDP 1568 H K + ++F+ LD VV+ + + ++ ++ L +N + F G+I+ I+ E+Y +++ P + +K+ I PN N KS + P K F QL R E + V + FLL NK ++ E + + LN+ WH FN++ V+ ++P Sbjct: 59 HFKNILDIFVSLDVVVNKLSKQRTSIYIDKVAEVLKEMNINNFDIGIFGQILRIFPESYSYEFDSPPLKVTRHYKEKMKII--PNF-NFGNKSDFI-PKKSQKVFRLDQLVSRMAHLYECLLGKVQERHNEFLLINKNLSKEEMEMFTLNKIWHEDFNLETSVQPIEP 222 The following BLAST results are available for this feature:
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of Chromatin licensing and DNA replication factor 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Chromatin licensing and DNA replication factor 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Chromatin licensing and DNA replication factor 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014686 ID=SMED30014686|Name=Chromatin licensing and DNA replication factor 1|organism=Schmidtea mediterranea sexual|type=transcript|length=2152bpback to top protein sequence of SMED30014686-orf-1 >SMED30014686-orf-1 ID=SMED30014686-orf-1|Name=SMED30014686-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=643bp MMSLFENSEHLVEHYKGKKKMSAVKHKVDSNSMMNKMPLPLHFKVLLDLFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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