Small heat shock protein p36
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014640 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|P12812|P40_SCHMA (Major egg antigen OS=Schistosoma mansoni OX=6183 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.388e-49 Identity = 120/391 (30.69%), Postives = 193/391 (49.36%), Query Frame = 3 Query: 273 ISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSW------DPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTN-----LVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADA-----CKTQTMDRNQVIVKRNTSGPVVLND-EKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSN----SSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 +SIPVN++ R+ E++R+++ + LE R N + D W S V WI +S KRWD +M R++R MF+L + +++ +PF + + + RQ I+ +R+ M + VP+ S D + YE G+DG++HFK+RF+A+ F P+DI VT + N + + +K T E + + +P SID + +C +T DG+L+LEAPVK S+ E + + + +Q +V + G ++D GKRLH+E+AV+ Y P D V + ++ V GRH + S+ SSSF EFSQ Y IPET+DP+S++ V+ TL++EA Sbjct: 10 VSIPVNREQRSFEKQRRDLLTGLEHG------------GGAHRGNSIAPYTED---------------WPSTVDNWIDSSWKRWDDDMRRLRRGMFAL------LPLDTFSIGILENPFALMHQMD--------RQ---------IQDIRERMGSLDVPSTG------SVNDFLKDAYEVGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGRKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVAVRPKSDNQIKAVPASQALVAKGVHGLSYVDDGSGGKRLHVEVAVDPVYKPEDLFVNVDSNRVVVSGRHHKQKSDQHGRSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEA 344
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Match: sp|Q7YZT0|TSP36_TAESA (Small heat shock protein p36 OS=Taenia saginata OX=6206 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.087e-28 Identity = 91/312 (29.17%), Postives = 151/312 (48.40%), Query Frame = 3 Query: 489 VSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTR-FVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKS----DTNLVE-LHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSI-VPQEKVFADACKTQTMDRNQVIVKRNTSGPVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKG--RHEVKTSNS--SSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEAIVY 1391 V +W + SR+ ++ + R++FSLE PF ++ D+ F E + + ++Q R F P + + D + YE G+DG LHFK+ F KNFK E+I + N L + +KS D + E + +SI +P S+D Q IT D +L++EAPV P+Y +I + EK A + + Q+ VK +V ++ K++HLE+ V+ + P D V A+ K+ V G E KT N+ S +EF + + PE +D ++DG +++EA ++ Sbjct: 35 VFDWAERSRQSLHDDIVNMHRNLFSLE------------PFTAM-------DNAF----------ESVMKEMSAIQPREFHPELEYTQPG--ELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGL--AIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEAPLF 313
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A183W2C5 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS6880 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 3.471e-55 Identity = 121/385 (31.43%), Postives = 194/385 (50.39%), Query Frame = 3 Query: 273 ISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNI-----VVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADA-----CKTQTMDRNQVIVKRNTSGPVVLND-EKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKT----SNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 +SIPVN++ R+ E++R+++ + LE S + + N+ D+W V W+ ++ +RWD +M R++R MF+L D ++ DPF + + I+ +RD M T VP+ S+ D + YE G+DG++HFK+RF+AK F PEDI VT + N L + V+ ++ E + + +P SID+ +C +T DG+L+LEAPVK P+Y S+ E + Q + ++ +V + T GP VL+D GK LH+E+ V+ Y P D V + ++ V GRH + +SSF EFSQ Y IPET+DP+S+ ++ TL++EA Sbjct: 10 VSIPVNREPRSFEKQRRDLLTGLERGGSGSSHSGNS-------------------------ITPYHDDWTGTVDHWVNSAWRRWDEDMRRLRRGMFALLP-VDHFPLSTHDPFALMHQMEHH-----------------IQDIRDRMGTLDVPS------TASASDFLKDAYEVGEDGKVHFKVRFDAKGFDPEDINVTSSDNCLTVHAKKETVKDGGKSIREFCRMVELPRSIDNNHLKCRLTDDGVLMLEAPVKVPEYQSLTLNESGQVGVRPKSDSQLQAVPSSKALVVKGTHGPTVLDDGSGGKLLHVEVPVDPVYKPEDLCVNVDSGRVVVSGRHHKEKHSARGGASSFAEFSQSYAIPETVDPLSVTSQLVGNTLVLEA 345
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: Q5DFS8 (Major egg antigen OS=Schistosoma japonicum OX=6182 GN=EWB00_009262 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 7.527e-52 Identity = 126/409 (30.81%), Postives = 206/409 (50.37%), Query Frame = 3 Query: 261 YRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSW-DPFRSVKRFNEDRDSEFQRQQKIASCSEG-IKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEK-----SDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFAD----------ACKTQTMDRNQVIVKRNTSGPVVLND-EKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGR-HEVKTSNS-----SSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEAIVY*TIASISH 1415 ++ + IP+N++++T E+ R+ + + L+ ++ R RP L N + D W + W+ +S + WD EM R++R MF+L +S DPF + R EG I+ +R+ + VP V + D + YE G+DG+L+FK+ F+AK F P++IKV T N L + +K S T E + I +P +ID + +C +T+DG+L+LEAPVK+PDY SI F D A + Q++ ++++ + SGP +L+D GKRLHLE+ V+ Y P D V + ++ V G+ H+ +S+S SS+ EF+ YEIPET+DP+ + + D L++EA + T ++SH Sbjct: 7 HQKSVVIPINQESKTFEQHRREMLTGLQHRHK-----------GRKRPKLSN--------------TTHIDTWSDVIDNWVDSSWRSWDDEMHRLRRGMFALLPLDTFGQISSIPDPFDLMHRM------------------EGEIEEIRNRIGMSKVPGVG------ALTDFLKDAYEVGEDGKLYFKVHFDAKGFAPDNIKVNSTENRLVVHAKKVSESDSSTQSREFCRMIELPRTIDHNQLKCRLTEDGVLMLEAPVKAPDYESI-----TFTDNRQLGIHPKSANQIQSIPSSKILALKGVSGPTILDDGANGKRLHLEVPVDPVYKPEDLCVNVDSNRVVVSGKIHKTDSSHSNKRSTSSYAEFTHSYEIPETVDPLLVAAQLFDNRLVLEAPLV-TRHTVSH 360
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A5J4N7G0 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0007882 PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 7.006e-51 Identity = 125/397 (31.49%), Postives = 191/397 (48.11%), Query Frame = 3 Query: 252 MSSYRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISS-EDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKS---DTNLV--ELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNS--------IVPQEKVFADACKTQTMDRNQVIVK-RNTSGPVVLND-EKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEV----KTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 M+ E IP+ D RTLE+RR+++ + LE K + D+P NH NWD +V+ WIQ + RW+ ++ R+ R F+L D D PF F + +Q++ S I + + ++ + D + YE G+DG+LHFK+RF+ + F P DI+V+ N L + +KS DT+ E ++I +P S+D +FQCH+T DGIL++EAPVK+PDY S + + K D K T NQ+ ++ GP VL D E G++LH+E+ VE + + V + + V GR + S S KEF++ Y IPET+D S+ + D TLI+EA Sbjct: 1 MTGKEHERVIPITTDARTLEQRRKDMVNNLERKQKS---ASGNLVKLADKPT----CNH---------------NWDDEVNRWIQEAYNRWNEDVGRMARDTFALVPQCD-FDMEPLVPFGMFGPFGHVPSILARMKQQLDSLHRQINAQPHLWSGNALGAITPRQCQTNGILDFLKDAYEIGEDGQLHFKVRFDVRGFGPNDIEVSTAKNRLTVHGKKSARTDTSSSSNEFSRTIYLPDSVDDSQFQCHMTGDGILMVEAPVKAPDYQSLTFDDKRQLAIKPKTGTDVAKAATNKNNQLALQLLGVCGPTVLQDGETGRKLHVEVPVEPGFTSDELRVRMDTNCVVVSGRKNIVEGSGQSQCSHVKEFTRTYTIPETVDTFSVKTQLKDNTLIVEA 374
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A183NBG5 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS25640 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 6.008e-50 Identity = 120/386 (31.09%), Postives = 188/386 (48.70%), Query Frame = 3 Query: 273 ISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSW-DPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTN-----LVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADA-----CKTQTMDRNQVIVKRNTSGPVVLND-EKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSN----SSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 +SIPVN++ R+ E +R+++ + LE R NL+ D W S V WI +S +RWD +M R++R MF+L D W DPF + + + I+ +R+ M + VP+ S D + YE G+DG++HFK+RF+A+ F P+DI VT + N + + +K T E + + +P SID + +C +T DG+L+LEAPVK S+ E + + + +Q +V + G ++D GKRLH+E+ V+ Y P D V + ++ V GRH + S+ SSSF EFSQ Y IPET+DP+S++ V+ TL++EA Sbjct: 10 VSIPVNREQRSFERQRRDLLTGLEHG------------GGTHRGNLIAPYTED---------------WPSTVDSWINSSWRRWDEDMRRLRRGMFALLP-LDNFTHGIWEDPFALMHQMDRH-----------------IQDIRERMGSMDVPSTG------SVSDFLKDAYEIGEDGKVHFKVRFDAQGFAPQDINVTSSENRVTVHAKKETTTDGGKCSREFCRMVQLPKSIDDSQLKCRMTDDGVLMLEAPVKVDQNQSLTLNESGQVGVRPKSDNQIKAVPASQALVAKGVHGLSYVDDGSGGKRLHVEVPVDPVYKPEDLCVNVDSNRVVVSGRHHKQKSDRYGKSSSFAEFSQSYAIPETVDPLSVSAQVVGNTLVLEA 344
BLAST of Small heat shock protein p36 vs. TrEMBL
Match: A0A5K4F2D7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.128e-49 Identity = 124/393 (31.55%), Postives = 196/393 (49.87%), Query Frame = 3 Query: 273 ISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSL-ESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTNLV-----ELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFAD----------ACKTQTMDRNQVIVKRNTSGPVVLNDE-KGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSN------SSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 + IP+N++ +T E+ R+ + + L+ ++ R RP L N + DT W + W+ +S + WD EM R++R MF+L D + + DPF + R + + E R + S GI + D ++ + YE G+DG+L+FK+ F+AK F PEDIKV T + L + +K + E + I +P +I+ + +C +T+DG+L+LEAPVKSPDY SI F D A + Q++ ++ +V + SGP++L+DE G+RLHLEI V+ Y P D V + K++ V G K S SS + EF+ YEIPET+DP+ + +ID L++EA Sbjct: 12 VDIPINQEPKTFEQHRREMLTGLQHRHK-----------GRKRPKLANTPHTDT--------------WSDVIDNWVDSSWRSWDDEMYRLRRGMFALLPLDNFGLRSSYPDPFDLMNRM--ENEIEEIRNRVGMSRVLGIGALNDFLK---------------------DAYEVGEDGKLYFKVHFDAKGFTPEDIKVDSTEHRLTVHAKKVSESDSSKSSREFCRMIELPQTIEHNQLKCRLTEDGVLMLEAPVKSPDYESI-----TFTDNRRLGIHPKSADQIQSVPASKALVVKGVSGPIILDDEVNGRRLHLEIPVDPVYKPEDLCVNVDSKRVVVSGISYQKDSGYFNKKSSSLYAEFTHSYEIPETVDPLLVTAQLIDNRLVLEA 351
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000028601.1 (SMESG000028601.1) HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 3 Query: 252 MSSYRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADACKTQTMDRNQVIVKRNTSGPVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEAIVY 1391 MSSYRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADACKTQTMDRNQVIVKRNTSGPVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEAIVY Sbjct: 1 MSSYRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDFNSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDSMQTRFVPTVNEKEKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADACKTQTMDRNQVIVKRNTSGPVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEAIVY 380
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000033587.1 (SMESG000033587.1) HSP 1 Score: 251.906 bits (642), Expect = 1.830e-78 Identity = 149/390 (38.21%), Postives = 220/390 (56.41%), Query Frame = 3 Query: 261 YRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRPNLLNRINHDTFFDNEKFFKSDFDNWDSDVSEWIQNSRKRWDMEMDRVKRSMFSLESDRDEMDF-NSWDPFRSVKRFNEDRDSEFQRQQKIASCSEGIKRMRDS---MQTRFVPTVNEK-----EKNISSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNI-----VVEKSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQEKVFADACKTQTMDRNQVIVK-RNTSGPVVLNDE-KGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVIDGTLIIEA 1382 Y EI+IPVN+D+R E+RR+++FS LE S +EN ++++ + F +E D WD ++ +W+ S+ WD + ++KR +F LE DF NS SV + QKI + S+G + S T P N + +K ++ D + + YE D +HFK+R + FKPED+KV + + I V + + E K+I +P S+D +KFQCH T DGILILEAP+K + S+ ++ + A + + +VK SGPVV++D GK++HLEI V+ DY P DFSV EL +I +KGRHEVKT+NSSSFKEFS+YYE+PET+DPMS++F ++DGTL++EA Sbjct: 2 YHQEITIPVNRDSRNFEQRRKDMFSKLESSVSTHTTSENKTVATKSQ------------FGHE-------DLWDLEIKDWVSKSKSSWDQDFAKIKRGLFDLEPIEGYGDFSNSDTTHHSVASYT----------QKIVT-SDGKTKTESSKSFHTTSGEPVQNLERQDYSQKCLTGTDFFKDAYEISDDKLVHFKVRLDTLGFKPEDLKVIAQDSKVTINARKETVTANQKSFKEFSKTITVPPSVDIKKFQCHQTNDGILILEAPIKQQENISVTLKDGLGVKAISDRHSTFSNSLVKVTGQSGPVVVDDAIYGKKIHLEIPVDKDYEPSDFSVYTELNQIHIKGRHEVKTANSSSFKEFSRYYEVPETLDPMSVSFHLLDGTLVVEA 361
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000009940.1 (SMESG000009940.1) HSP 1 Score: 54.299 bits (129), Expect = 9.664e-8 Identity = 59/263 (22.43%), Postives = 110/263 (41.83%), Query Frame = 3 Query: 759 SSEDSYHNFYEFGQDGELHFKIRFEAKNFKPEDIKVTCTGNNLNIVVEKS-------------DTNLVELHKSIVIPSSIDSQK-FQCHITQDGILILEAPVKSPDYNSIVP-------------QEKVFADACKTQTMDRNQVIVKRNTSG--------------------------PVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNS-SSFKEFSQYYEIPETIDPMSINFSVID-GTLIIEA 1382 S E S YE +G++ + + F P DI++ GN L I ++S ++ E K I +PS+ID +K + T++G+L + P+ Y+++ P Q+ F T + +TSG PV++ D K K EI ++ + P D ++ + ++ + +HE N ++ KEF+ +++P +DP ++ ++ID G ++IEA Sbjct: 18 SFERSIQPRYEKSTNGDVDYIFTVDVDGFSPSDIRIDQRGNMLAIEAKQSKSGSKKGVHGNTEESEYKEFKKEISLPSNIDMKKEMRSVYTENGLLEIRIPILPQTYSNLYPPIRRPITIQRQSPQQTTFN--ILTPQISSPVYSSSFSTSGMGHRTLNGSLSPFDCSSSSLRSSMRSPVLITD-KSKNYVEEIVIDPIFRPEDLNIKTKGYRVIISAKHEESGPNGYTNMKEFNDEHDLPSNVDPDNLKATLIDNGVVLIEA 277
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Match: SMESG000030562.1 (SMESG000030562.1) HSP 1 Score: 49.6766 bits (117), Expect = 2.492e-6 Identity = 45/201 (22.39%), Postives = 93/201 (46.27%), Query Frame = 3 Query: 840 NFKPEDIKV---TCTGNNLNIVVE---KSDTNLVELHKSIVIPSSIDSQKFQCHITQDGILILEAPVKSPDYNSIVPQE--------KVFADACK-----TQTMDRNQVIVKRNTSGPVVLNDEKGKRLHLEIAVESDYVPGDFSVTAELKKISVKGRHEVKTSNSSSFKEFSQYYEIPETIDPMSINFSVI-DGTLIIEA 1382 ++P ++ + T N I++ +S+ + E+ K + IP ++D + + +++DG+LIL+AP K + + P + ++ + + +D + VIV+ T N G L+ + D+ + + K+I ++ R E KT N S K ++ IP+ ++ + ++ DG LI+EA Sbjct: 43 GYEPSEVAIKEETSNEGNSKIIIHAKHESEDDFSEMKKVVKIPKNVDHEHLRTILSKDGVLILKAPYKESVDSYVQPLKIKRTDTWNGIWGELGRLNEQMNHLIDSHAVIVRPRTEFIADGNGVSG-TWRLKFNIGKDFKSDEIKLRHHNKQIHLEARRETKTDNDYSSKYINEVISIPDEVEADKLKSKLLDDGELIVEA 242 The following BLAST results are available for this feature:
BLAST of Small heat shock protein p36 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of Small heat shock protein p36 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Small heat shock protein p36 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Small heat shock protein p36 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Small heat shock protein p36 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014640 ID=SMED30014640|Name=Small heat shock protein p36|organism=Schmidtea mediterranea sexual|type=transcript|length=1659bpback to top protein sequence of SMED30014640-orf-1 >SMED30014640-orf-1 ID=SMED30014640-orf-1|Name=SMED30014640-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=381bp MSSYRTEISIPVNKDNRTLEERRQNVFSALEEKYSKPNVTENTRISSRDRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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