SMED30014615
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Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014615 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30014615 aligns in the following genomic locations:
Homology
BLAST of SMED30014615 vs. TrEMBL
Match: A0A0B7B729 (MULE domain-containing protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF162021 PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.432e-88 Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = -2
Query: 1045 FILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEITEDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVYENS 1332
F LT+N+R KLADE LLRRYN DPDF LVARMI+ALSFVPIEDLD+A E L+NEI E+LTPILNWFEDVYIGRQN N TRR +LFPP M VYE +
Sbjct: 57 FHLTKNMRKKLADEGLLRRYNMDPDFALVARMIIALSFVPIEDLDVAFEALENEIAEELTPILNWFEDVYIGRQNRNSTRRRALFPPHMWSVYERT 152 HSP 2 Score: 128.642 bits (322), Expect = 1.432e-88 Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = -3
Query: 765 RTVNGEDPTNN*C*SSTSKIASRIW--DGNIWKFIDVIQGVQKWRDLVYEQFIRGKKPPVKRRKYVAADTTIMTIVKSYRKRNIIEYLRELAHNFLMD 1052
RTVNG D TNN ++ ++ + NIWKFID I+GVQK RDLVYEQF+RG +PPVKRRKYVAAD I+TIV+SYR+RNIIEYLR +AHNFLMD
Sbjct: 151 RTVNGLDRTNNYVEAAHRRLQAEFGMDHPNIWKFIDGIRGVQKGRDLVYEQFVRGNQPPVKRRKYVAADIRIITIVESYRERNIIEYLRGIAHNFLMD 248 HSP 3 Score: 98.9821 bits (245), Expect = 1.432e-88 Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = -1
Query: 1325 YALLPNKEAKTYRRLFEAIKEMWSLLNP---SIDFEQAAIGAIL-TFPNCAIHRCLFHF 1489
YALLPNKE +TYRRLFEAIKE+W LLNP SIDFEQAAIGAIL TFPNCAIH CLFH
Sbjct: 1 YALLPNKEGRTYRRLFEAIKELWPLLNPSSISIDFEQAAIGAILTTFPNCAIHGCLFHL 59
BLAST of SMED30014615 vs. TrEMBL
Match: A0A0B7B6F7 (FLYWCH-type domain-containing protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF162024 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 4.553e-78 Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = -1
Query: 1838 IENATSKRGKE*LNHEGYCYVFNKLSADYSKMFWRCELKNECKARLHMTVDDDRVLMQMNQLSNGSDAAQLRVAMIMTGIKRMATVLSKEP 2110
+EN SKRGK+ LNHEGY YVF+K SAD+SK FWRCELKNECKARLH TVD+DRVLMQMNQ S+GSDAAQLR AMIMTGIKR AT ++ P
Sbjct: 1 MENVPSKRGKQKLNHEGYFYVFDKFSADHSKKFWRCELKNECKARLHTTVDNDRVLMQMNQHSHGSDAAQLRAAMIMTGIKRRATETTEIP 91 HSP 2 Score: 132.109 bits (331), Expect = 4.553e-78 Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = -2
Query: 1498 QHVDRA*II-PDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQICVIMAVR-GFVL 1749
Q VDRA II PDAYRMYEV PDQME FLL D GE+DENRILLFGRQSN +W+NLMERL VDGTFS+APALF QI VIMA R GFVL
Sbjct: 133 QPVDRASIIIPDAYRMYEVEPDQMEGFLLWDSGEQDENRILLFGRQSNVEWNNLMERLYVDGTFSIAPALFSQIYVIMAARGGFVL 218 HSP 3 Score: 63.5438 bits (153), Expect = 4.553e-78 Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = -3
Query: 1752 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAP 1859
N AL+GTS AVQ KMPNKDTIRKVIQRSRN NR+AP
Sbjct: 96 NRALQGTSLAVQGKMPNKDTIRKVIQRSRNGNRVAP 131
BLAST of SMED30014615 vs. TrEMBL
Match: A0A1I8BWB6 (Uncharacterized protein OS=Meloidogyne hapla OX=6305 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 7.483e-59 Identity = 89/238 (37.39%), Postives = 132/238 (55.46%), Query Frame = -2
Query: 1054 A*IIPDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQICVIMAVRG-FVLP--FCMLCCQIKK--------LKLTDDCLKPLKKCGHFSILLLTSNKPQLELF*RFRIVQSIDVSFILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEITEDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVY 1734
A +IP Y YE P E+FLL D GE DE RIL+FGR+S DWS+L+ L VDGTF + PALF Q V++A R +VLP +C+L + + ++L L P F + + + + +F I F QN++ L+ E+LL +YN P+F++ +MIV+L+F+P +DL A+ L+N + +L PIL++F + YIGR +N R +F P VY
Sbjct: 140 ALVIPLNYSRYESEPGVYEQFLLADSGEGDEERILIFGRESFQDWSHLIAELYVDGTFLICPALFYQFFVVLARRNDYVLPIFYCLLPNKTENTYRRTFEMIRLIWPLLNPDSISVDFEVAIHNAIRT---VFPESHIRGCF---FHFFQNLKKHLSAENLLNQYNNSPEFSIHCKMIVSLAFIPQQDLIEALTILENYLPMELEPILSYFTNTYIGRIRNNGVRAPPIFVPSSWNVY 371 HSP 2 Score: 79.7221 bits (195), Expect = 7.483e-59 Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -3
Query: 774 DMSTRTVNGEDPTNN*C*SSTSKIASRIWDGN--IWKFIDVIQGVQKWRDLVYEQFIRGKKPPVKRRKYVAADTTIMTIVKSYRKRNIIEYLRELAHNF 1064
++ TRT+N ED TNN C + K+ ++ + IWKF+D ++ V K D YEQF+ G + KRRKY AD I+ IV Y +IEYLR ++HNF
Sbjct: 369 NVYTRTINNEDKTNNFCEAFHRKVQLQLGVSHPTIWKFLDELKKVVKMCDAQYEQFVAGHQATRKRRKYEEADERILNIVNRYEIGTVIEYLRGISHNF 467 HSP 3 Score: 48.1358 bits (113), Expect = 7.483e-59 Identity = 25/90 (27.78%), Postives = 48/90 (53.33%), Query Frame = -1
Query: 1838 SKRGKE*LNHEGYCYVFNKLSADYSKMFWRCELKNE-CKARLHMTVDDDRVLMQM---NQLSNGSDAAQLRVAMIMTGIKRMATVLSKEP 2095
S + E +H GYCYV ++ S+D +FWRC+ + + CK R+ T ++R +++ + S D ++ V +T +++ A + P
Sbjct: 3 SSKNFEKYSHNGYCYVKDRESSDGQIIFWRCDERGKGCKGRIWTTSCENREFIRLVTEHSCSTTGDPVRVAVQQAITTVRQRAATTMENP 92 HSP 4 Score: 33.4982 bits (75), Expect = 7.483e-59 Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = -3
Query: 1746 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAPNN 1859
++ L+G STAV ++ NK +RKV++R R + AP N
Sbjct: 97 SNVLQGVSTAVLGQLQNKSAMRKVVKRIRLQQQEAPRN 134 HSP 5 Score: 62.003 bits (149), Expect = 3.592e-6 Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = -1
Query: 1325 VLYALLPNKEAKTYRRLFEAIKEMWSLLNP---SIDFEQAAIGAILT-FPNCAIHRCLFHF 1495
+ Y LLPNK TYRR FE I+ +W LLNP S+DFE A AI T FP I C FHF
Sbjct: 221 IFYCLLPNKTENTYRRTFEMIRLIWPLLNPDSISVDFEVAIHNAIRTVFPESHIRGCFFHF 281
BLAST of SMED30014615 vs. TrEMBL
Match: A0A2C9LZH9 (MULE domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106073290 PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 1.512e-55 Identity = 113/239 (47.28%), Postives = 145/239 (60.67%), Query Frame = -2
Query: 1051 IPDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQICVIMAVRG-FVLPFCMLCCQIKKLKLTDDCLKPLKKC-------------GHFSILLLTSNKPQLELF*RFRIVQSIDVSFILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEITEDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVYE 1725
IP Y+ Y V+P+ E+FLL D GE D RILLFG++SN WS+ ++L VDGTF ++P++F QI VIMA RG FVLP K+ + + +K+ +I L S P + F LT+N+R KLADE+LL YN DP+F L ARMIVAL+FVPIEDLD+A+ETL NE+ LTPI+NWFED YIGR N +RTR +LFPP M VY+
Sbjct: 120 IPIEYQNYIVSPELTEKFLLYDSGENDNKRILLFGKESNGSWSSQTKKLYVDGTFRISPSIFSQIYVIMAERGGFVLPVLYALLPNKEGETYRRMFEAVKELWQDLNPSSVSMDFEQAAIGALQSTYPLCAIH---------GCLFHLTKNMRKKLADENLLSMYNNDPEFALAARMIVALAFVPIEDLDLAVETLANELPLHLTPIINWFEDTYIGRLNRSRTRXCALFPPPMWSVYQ 349 HSP 2 Score: 50.447 bits (119), Expect = 1.512e-55 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = -3
Query: 1752 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAP 1859
NS+L+GTS AV KMP KD +RKVIQR RN+ + AP
Sbjct: 74 NSSLQGTSAAVHAKMPKKDALRKVIQRKRNEIQGAP 109 HSP 3 Score: 89.7373 bits (221), Expect = 2.031e-15 Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = -1
Query: 1325 VLYALLPNKEAKTYRRLFEAIKEMWSLLNP---SIDFEQAAIGAIL-TFPNCAIHRCLFHF 1495
VLYALLPNKE +TYRR+FEA+KE+W LNP S+DFEQAAIGA+ T+P CAIH CLFH
Sbjct: 198 VLYALLPNKEGETYRRMFEAVKELWQDLNPSSVSMDFEQAAIGALQSTYPLCAIHGCLFHL 258
BLAST of SMED30014615 vs. TrEMBL
Match: A0A2C9KG87 (MULE domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106058662 PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.348e-53 Identity = 120/254 (47.24%), Postives = 158/254 (62.20%), Query Frame = -2
Query: 979 IPDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQICVIMAVRG-FVLPFCMLCCQIKKLKLTDDCLKPLKK-CGHFSILLLTSNKPQLE---LF*RFRIVQSIDVSFILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEITEDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVYENSEWRGSYQQLMLKQHIEDCKPNL 1725
IP Y+ Y V+P+ E+FLL D GE D RILLFG++SN WS+ M++L VDGTF +AP++F QI VIMA RG FVLP K+ + + +K+ C + ++ + Q L + + F LT+N+R KLADE+LL YN DP+F L ARMIVAL+FVPIEDLDMA+ETL NE+ LTPI+NWFED IGR NH+ TRR P + + E+S Q ++ KQHI D KP+L
Sbjct: 33 IPIEYQNYIVSPELTEKFLLYDSGENDNKRILLFGKESNGSWSSQMKKLYVDGTFRIAPSIFSQIYVIMAERGGFVLPVLYALLPNKEGETYRRMFEAVKELCPDLNPSSVSMDFEQAAIGALQSTYPLCAIHGCLFHLTKNMRKKLADENLLSMYNNDPEFALAARMIVALAFVPIEDLDMAVETLANELPLHLTPIINWFEDTSIGRLNHSTTRRC----PPIRSIREHS-MEIIEQTILWKQHIGDYKPSL 281 HSP 2 Score: 83.5741 bits (205), Expect = 8.700e-14 Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = -1
Query: 1325 VLYALLPNKEAKTYRRLFEAIKEMWSLLNP---SIDFEQAAIGAIL-TFPNCAIHRCLFHF 1495
VLYALLPNKE +TYRR+FEA+KE+ LNP S+DFEQAAIGA+ T+P CAIH CLFH
Sbjct: 111 VLYALLPNKEGETYRRMFEAVKELCPDLNPSSVSMDFEQAAIGALQSTYPLCAIHGCLFHL 171
BLAST of SMED30014615 vs. Planmine SMEST
Match: SMESG000073146.1 (SMESG000073146.1) HSP 1 Score: 152.14 bits (383), Expect = 8.644e-43 Identity = 82/136 (60.29%), Postives = 98/136 (72.06%), Query Frame = -2
Query: 952 FILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEITEDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVYE---NSEWR------GSYQQLMLKQHIEDCKPNLGWKHLEIYR 1332
F LT+N+R KL D+ LLRRYN D DF LVA MIVA+SFV IE LD+AIE LDN+ITE+LTPILNWFEDVYIGRQNHNRTRR++LF PQM VYE N E R +Q+L L+ PN+ WK +++ R
Sbjct: 12 FHLTKNMRKKLTDKGLLRRYNIDSDFALVAGMIVAISFVSIEGLDIAIEALDNKITENLTPILNWFEDVYIGRQNHNRTRRHTLFSPQMWSVYERTVNGEHRTNNYVESEHQRLQLQAEFGMDHPNI-WKFIDVIR 146
BLAST of SMED30014615 vs. Planmine SMEST
Match: SMESG000030505.1 (SMESG000030505.1) HSP 1 Score: 112.849 bits (281), Expect = 2.190e-35 Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = -2
Query: 1528 QHVDRA*II-PDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQIC 1749
Q VDRA II DAYRMY+VAPDQMEEFLL D GE+DENRILLFGRQSN DWSNLM+R+ +D TFSLAP LF IC
Sbjct: 77 QPVDRASIIISDAYRMYKVAPDQMEEFLLWDSGEQDENRILLFGRQSNGDWSNLMKRMYIDRTFSLAP-LFTDIC 150 HSP 2 Score: 56.6102 bits (135), Expect = 2.190e-35 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -3
Query: 1752 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAP 1859
NSAL+GTS A Q K+PNKD I KVIQ+SRNDN +AP
Sbjct: 40 NSALQGTSPAFQAKLPNKDAICKVIQQSRNDNLVAP 75 HSP 3 Score: 98.9821 bits (245), Expect = 3.599e-23 Identity = 87/235 (37.02%), Postives = 108/235 (45.96%), Query Frame = -1
Query: 1343 MQMNQLSNGSDAAQLRVAMIMTGIKRMATVLSKEPRLPFK*RCQTKTPFARLFSGVXXXXXXXXXTCRSSLN------------YSGCISDV-----------------RSGTRSDGRISFKRLGRRRRKSHSSLWPTVE**LE*SDGKTVCRRNIQLGSCSFFTDMCNHGSER-IRTAV-LYALLPNKEAKTYRRLFEAIKEMWSLLNP---SIDFEQAAIGAIL-TFPNCAIH 1942
MQMNQ S+G DA QLRVAMI+TGIKR ++ P + Q +P F + + + S N S ISD SG + + RI GR+ S+L + R L FTD+CNH SER IR V +++ KEA+TYRRLFEAIKEMW N SIDFEQA+IGAI TFPN AI+
Sbjct: 1 MQMNQHSHGRDATQLRVAMIVTGIKRRTIETTEIPSVIINSALQGTSP---AFQAKLPNKDAICKVIQQSRNDNLVAPPQPVDRASIIISDAYRMYKVAPDQMEEFLLWDSGEQDENRILL--FGRQSNGDWSNLM-----------KRMYIDRTFSL--APLFTDICNHDSERRIRIDVFVWSAAKYKEARTYRRLFEAIKEMWPFFNSSSVSIDFEQASIGAIRKTFPNYAIY 217
BLAST of SMED30014615 vs. Planmine SMEST
Match: SMESG000026610.1 (SMESG000026610.1) HSP 1 Score: 108.612 bits (270), Expect = 2.565e-35 Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = -2
Query: 1495 IIPDAYRMYEVAPDQMEEFLLRD*GEEDENRILLFGRQSNSDWSNLMERLCVDGTFSLAPALFLQICVIMAVR-GFVLP 1728
II + YRMYEVA DQMEEFLL D GE DENRIL FGRQSN D SNLM++L VDGTF L A+F QI V MA R GFVLP
Sbjct: 76 IILNTYRMYEVAQDQMEEFLLWDSGEHDENRILHFGRQSNGDCSNLMKKLYVDGTFILDSAVFSQIYVFMAARGGFVLP 154 HSP 2 Score: 48.521 bits (114), Expect = 2.565e-35 Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = -3
Query: 1713 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAPNNMSIELKLFRMH 1859
NS L+ TSTAVQ M NKD IRKVIQ S NDNR + I L +RM+
Sbjct: 40 NSTLQVTSTAVQANMSNKDAIRKVIQWSINDNRAS----IIILNTYRMY 84 HSP 3 Score: 32.3426 bits (72), Expect = 2.565e-35 Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = -3
Query: 1326 LRTSRNWSYF-NVSELCNP*MSLSF 1397
+RT+ NWSY NVSEL NP M SF
Sbjct: 187 VRTNLNWSYLNNVSELYNPWMPFSF 211 HSP 4 Score: 77.411 bits (189), Expect = 9.542e-16 Identity = 70/207 (33.82%), Postives = 91/207 (43.96%), Query Frame = -1
Query: 1403 MQMNQLSNGSDAAQLRVAMIMTGIKRMATVLSKEPRLPFK*RCQTKTPFARLFSGVXXXXXXXXXTCRSSLNYSGCISDVRSGTRSDGRISFKRLGRRRRKSHSS-------LWPTVE**LE*SDGKTVCRRNIQL-GSCS-FFTDMCNHGSERIRTAV------------------LYALLPNKEAKTYRRLFEAIKEMWSLLNPS 1942
MQMNQ S+G A QLRV +IMTGIKR AT ++ P + Q + T +++++ I V + +D R S L R + LW + E D + Q G CS + G+ + +AV LYALLPNKEA+TYRRLFEAIKEMW LLNPS
Sbjct: 1 MQMNQHSHGCYAEQLRVTVIMTGIKRRATETTEIPSVILNSTLQVTS-----------------TAVQANMSNKDAIRKVIQWSINDNRASIIILNTYRMYEVAQDQMEEFLLWDSGE-----HDENRILHFGRQSNGDCSNLMKKLYVDGTFILDSAVFSQIYVFMAARGGFVLPVLYALLPNKEARTYRRLFEAIKEMWPLLNPS 185
BLAST of SMED30014615 vs. Planmine SMEST
Match: SMESG000065925.1 (SMESG000065925.1) HSP 1 Score: 98.2117 bits (243), Expect = 9.416e-24 Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = -2
Query: 1018 FILTQNIRMKLADEDLLRRYNTDPDFTLVARMIVALSFVPIEDLDMAIETLDNEIT----EDLTPILNWFEDVYIGRQNHNRTRRNSLFPPQM*YVYENSEWRGSYQQL 1332
F LT+N+ ADE LLR+YNTDPDFTLV RMIVALSFVP EDLD+A+ LDNEIT +L IL +Y ++ + + + + ENSEWRGSYQQL
Sbjct: 36 FHLTKNMHQTFADECLLRQYNTDPDFTLVVRMIVALSFVPFEDLDVAVNALDNEITGRPQANLKLILGC---MYRTLKSQPNSPSCVVSSSNVVCIRENSEWRGSYQQL 141 HSP 2 Score: 55.8398 bits (133), Expect = 4.647e-9 Identity = 49/123 (39.84%), Postives = 59/123 (47.97%), Query Frame = -1
Query: 1100 MWSLLNPS---IDFEQAAIGAI-LTFPNCAIHRCLFHF--DAEHTY--EVSRRR------FTSPI*HRSGLHLGCQNDSRSLLCSNRRP*YGY*DTG**NYGRPHANLKLV*GCLHRTSKSQP 1426
M SL NPS IDFEQAAI +I TFPNC IH CLFH + T+ E R+ FT + L D + + G RP ANLKL+ GC++RT KSQP
Sbjct: 1 MCSLFNPSSVSIDFEQAAIRSIQTTFPNCEIHACLFHLTKNMHQTFADECLLRQYNTDPDFTLVVRMIVALSFVPFEDLDVAVNALDNEITG----------RPQANLKLILGCMYRTLKSQP 113
BLAST of SMED30014615 vs. Planmine SMEST
Match: SMESG000056539.1 (SMESG000056539.1) HSP 1 Score: 54.299 bits (129), Expect = 5.592e-15 Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = -3
Query: 1752 NSALEGTSTAVQVKMPNKDTIRKVIQRSRNDNRIAP 1859
NS L+GTSTA+Q M NKD IRKVIQ SRN NR+ P
Sbjct: 40 NSTLQGTSTAIQAMMSNKDAIRKVIQWSRNGNRVVP 75 HSP 2 Score: 46.2098 bits (108), Expect = 5.592e-15 Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = -2
Query: 1666 QHVDRA*II-PDAYRMYEVAPDQMEEFLL 1749
Q VDR II P+AYRMYEVAPDQMEEFLL
Sbjct: 77 QLVDRISIIFPEAYRMYEVAPDQMEEFLL 105 The following BLAST results are available for this feature:
BLAST of SMED30014615 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30014615 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30014615 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30014615 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30014615 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30014615 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014615 ID=SMED30014615|Name=SMED30014615|organism=Schmidtea mediterranea sexual|type=transcript|length=2200bpback to top protein sequence of SMED30014615-orf-1 >SMED30014615-orf-1 ID=SMED30014615-orf-1|Name=SMED30014615-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=126bp MGKFSKILDDVSFSVTLNNCHDCGICCDIFSALYRRLFSTNELLIYKVTPback to top Annotated Terms
The following terms have been associated with this transcript:
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