DNA-directed RNA polymerase subunit beta
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014584 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A151IM57 (Uncharacterized protein (Fragment) OS=Cyphomyrmex costatus OX=456900 GN=ALC62_03109 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.930e-77 Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAIK 3086 +M++SQF L P E+ GLRD+C F V L++K WF TAP++DL FL++LI +E ++ ++AA K HLWY++EELVGLA FD +S+ TK ++V+A+K Sbjct: 299 YMYKSQFQLTPQELSGLRDVCIFIVQLFVKAWF------TAPNHDLQFLKSLIRFENINKKAAQAAVKKFTGHLWYLNEELVGLAFFDSTVSSDTKEKMVAALK 396 HSP 2 Score: 93.9745 bits (232), Expect = 5.930e-77 Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 2 Query: 2582 GSRNKLLEFAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 S++ ++ F QL+ QPR+DYREFLEL IIFLG +P+RGI F A GA+H ARWMSK LYSLK+Y+ Sbjct: 234 NSKDDIIAFCIDQLKKTQPREDYREFLELVIIFLGGIPSRGILFRAPGAVHDARWMSKALYSLKIYM 300 HSP 3 Score: 88.9669 bits (219), Expect = 5.930e-77 Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 1937 RTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGKET-IDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 R +SDRK ++++ AK+LG + D++++RSTI+RQR+ R S +++ F+ D LVVHWDGK+L + +G +D+L I VSG KLL L+ STG+AQA+A Sbjct: 17 RCNISDRKGAFIISACAKALGCTLDDISISRSTIKRQREKARTESSVLIKQNFKP--DEWLVVHWDGKILPETSGTSIHVDKLAITVSGANSDKLLGIISLERSTGEAQADA 126 HSP 4 Score: 80.1073 bits (196), Expect = 5.930e-77 Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 3 Query: 2310 ESHVI*HEFQHRSAN-----GACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMG-PSSAPEVLMFKRFQSCWQFIDQASYSTGMDAKDVAAVLMD 2585 ES +I F +AN GACVL+E L +LL LACRHH++ELV+ ++F+ + P + P V ++KRFQ W ID ++ TG+ ++A+VL + Sbjct: 137 ESRIIAMSFDTTAANTGPYNGACVLIESQLKSDLLYLACRHHMYELVLRSIFEASIKTPVNGPNVGLYKRFQQSWSNIDTMAFETGISEINIASVLSN 234
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: J9M593 (Uncharacterized protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 5.073e-75 Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 2 Query: 1937 RTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGKETIDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 R K+SDR AV+++ TA+S G ++ +L +NR+++ RQ R+ LR F P VVHWDGK+L L+ K+ +DRLPI++S KGI +LL +L S TG+ QA A Sbjct: 216 RCKISDRDAVHILLATAESFGININELIINRTSVNSIRQRFRKNRIEALRVNFNPSQIGPCVVHWDGKLLPSLSEKKLVDRLPIIISYKGIEQLLGVPELISGTGENQATA 326 HSP 2 Score: 89.3521 bits (220), Expect = 5.073e-75 Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 2 Query: 2588 RNKLLEFAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 +++LL F +QL+ QPRDDY+E LEL+IIFLG+ P GI F G +HHARWMSK +YS+K+++ Sbjct: 435 KDELLIFCINQLKQYQPRDDYKELLELTIIFLGQTPPNGIFFKVPGPIHHARWMSKAIYSIKIFL 499 HSP 3 Score: 87.4261 bits (215), Expect = 5.073e-75 Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAIKVID 3095 F+FR++F L E LRD+C F V +Y+K WF A AA AP+ DL F++ +I YEV+ ISK+A KM HLWY++ E LA FD +S+ TK ++V A++ D Sbjct: 498 FLFRNEFKLTLKENNALRDLCIFIVRIYIKQWFCARAAALAPNMDLQFIKDIILYEVIDEQISKSALKKMCGHLWYLTPEATSLAFFDDKVSSQTKIKMVKAMQSRD 604 HSP 4 Score: 73.1738 bits (178), Expect = 5.073e-75 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3 Query: 2355 GACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMD 2555 GAC+LLEQ L +L L CRHHI E+V+ + F+ + +SAP+V +FKRFQ CW I+ ++ G++ Sbjct: 357 GACILLEQKLEREILYLPCRHHILEVVLRSAFEIKIDIASAPDVPIFKRFQKCWPNINVNNFHIGLE 423 HSP 5 Score: 30.0314 bits (66), Expect = 5.073e-75 Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 2278 ALNEWGIADRVRAMSFDTS-SNTG 2346 AL WG+ D V+A+ DT+ SNTG Sbjct: 330 ALENWGLTDNVQALCCDTTASNTG 353 HSP 6 Score: 93.2041 bits (230), Expect = 1.079e-18 Identity = 47/131 (35.88%), Postives = 78/131 (59.54%), Query Frame = 1 Query: 1234 STRSKTKVYLLESYTEVLTGGKLPSLRQVLGLLLHEHKENGKTIREASTIAIESTAKFWQKGRIPTRAVQHCQAKVESEFVVWRLRLLKKNASRKAETQKAKKAAFCSRLDDLFDIAHADALKNIKIEEDR 1626 + R K++L+ + + G KLPS++QVL +L ++ +R+++ + I FW+K RIP R H KVES + W R L+K+++RK+ + + F ++L+D+FDIAHA AL +KIE D+ Sbjct: 8 NLRDSNKIFLVGHISNQIIGSKLPSIKQVLSVLFFNMRKVNLNLRDSAKLVIREVIIFWEKARIPVREEYHLLKKVESLYNEW--RNLQKHSTRKSAKDRKNEEIFVNKLNDIFDIAHARALDIMKIECDK 136 HSP 7 Score: 32.3426 bits (72), Expect = 1.079e-18 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 1625 EFLLAQREKGRRGSMLGLD 1681 +FL+AQR KGR G +LG+D Sbjct: 137 QFLIAQRTKGRPGCLLGID 155
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A151ICQ4 (Uncharacterized protein OS=Cyphomyrmex costatus OX=456900 GN=ALC62_11109 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.715e-70 Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 2 Query: 2588 RNKLLEFAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 ++++L F + LQI QPRDDY+E LEL+IIFLG++P GI+F GA+HHARW+SK +Y LK+Y+ Sbjct: 442 KDEILNFTLNFLQIRQPRDDYKELLELTIIFLGKLPPNGIKFKIPGAVHHARWLSKAIYGLKMYL 506 HSP 2 Score: 89.7373 bits (221), Expect = 5.715e-70 Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 1913 PWVSCNAGRTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGK-ETIDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 P V R KVSDR A++++ K+L ++ D+ L+RSTI R+R RE I+ L+E + V LVVHWDGK+L D K + +DRLP+++SG +LL KL S TGK Q+E+ Sbjct: 216 PEVVAALDRGKVSDRNAMHIICALTKALNVNINDVNLSRSTIYRRRIKIREQIANDLKENLQ--VAAFLVVHWDGKLLPDDIFKFKKVDRLPVVISGLDTEQLLGVPKLDSGTGKKQSES 333 HSP 3 Score: 83.5741 bits (205), Expect = 5.715e-70 Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAI 3083 ++FR +F L EV L + C F V+ Y+K W+ AP A AP+NDL +Q I YE ++ I KA+ K+A HLWY+SE L G+AL D + KR+++ A+ Sbjct: 505 YLFREEFRLTNYEVTALCEFCLFIVTFYIKWWYTAPFAIQAPYNDLMMIQDFITYEAINDKILKASQCKLANHLWYLSENLAGIALMDDRVPNELKRKMIKAM 607 HSP 4 Score: 74.3294 bits (181), Expect = 5.715e-70 Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 3 Query: 2355 GACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMDAKDVAAVLMD 2585 G CVL+E+ L L L CRHHI ELV+ VFQ Y +SAP V +F RFQ W ID + G++ ++ VL D Sbjct: 364 GTCVLIEKSLKRKLFYLGCRHHILELVLKNVFQIYWPATSAPTVSIFIRFQENWDRIDVTKFKPGINDPKISQVLSD 440
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: A0A151IND4 (Uncharacterized protein OS=Cyphomyrmex costatus OX=456900 GN=ALC62_02431 PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.174e-68 Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 2 Query: 1937 RTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGKETIDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 R+KVS+R AVY++A T K+L D++D+ L+ T+RR RQ++R ++ LVVHWD KML+ L K+ +DRL +LVSGKG KLL ++S TG AQA+A Sbjct: 238 RSKVSNRSAVYILAATCKALQCDIRDINLSAETVRRSRQNYRHHTMQDVKNSLPTAAS--LVVHWDSKMLKSLKSKDLVDRLAVLVSGKGNIKLLGIPIIESGTGAAQAQA 346 HSP 2 Score: 80.8777 bits (198), Expect = 2.174e-68 Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 2355 GACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMDAKDVAAVL 2579 G C LLE LG +LL+L CRHHI EL + AVF G S+ PE+ +F+RFQ W ID++ Y +G+ +++ ++ Sbjct: 377 GTCTLLENKLGKSLLALPCRHHILELPLSAVFNFLFGASNGPEIKLFQRFQKAWSTIDKSQYESGLQDSNLSYLI 451 HSP 3 Score: 80.1073 bits (196), Expect = 2.174e-68 Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAI 3083 ++FR QF + +E+ LR F+V +Y+K W+ A AP NDL ++ L++Y+ V+ +S+ A A M++H WY+SE+L+ LA FD + KR +VS++ Sbjct: 518 YLFRKQFPITKSELAALRQFNIFTVGIYLKNWYTCQNATLAPVNDLQLMKDLLEYKTVNTKVSEIAFATMSRHTWYLSEKLIALAFFDSSVPVEIKRAMVSSL 620 HSP 4 Score: 74.7146 bits (182), Expect = 2.174e-68 Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 2588 RNKLLEFAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 R L+ F ++Q+++ QPRDDY+E L+L+++F+G + + A GA+H ARWM+K +Y LK+Y+ Sbjct: 455 REDLVIFIQNQMKMFQPRDDYKELLQLALLFMGENSIKPVNIRAPGAVHRARWMAKTIYCLKIYL 519
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Match: J9M4P2 (Uncharacterized protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-67 Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 2 Query: 1937 RTKVSDRKAVYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGKETIDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 + KVSDR AV+L+ A+ +V D A+NRS+++R R+ R IS ++ F VVHWD K+L +L G E +DRLP++++ + +LL L S TGK + A Sbjct: 332 KCKVSDRDAVHLLIACAEVFNVNVNDYAINRSSVKRSREGFRYQISSEIKTAFHQLNLNFAVVHWDSKILPNLIGTENVDRLPVIITAPNVEQLLGVPHLSSGTGKEISSA 442 HSP 2 Score: 81.6481 bits (200), Expect = 2.779e-67 Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 2352 NGACVLLEQMLGINLLSLACRHHIFELVIGAVFQ-TYMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMDAKDVAAVL 2579 NG+CVLLEQML +L LACRHHIFE+++ +VF + + S PE+ +FKRF++ W IDQ Y+T + +V +L Sbjct: 472 NGSCVLLEQMLNRPILFLACRHHIFEIILQSVFSYSKLTTMSGPEIPIFKRFKNNWNQIDQTKYNTWVSDNEVKKIL 548 HSP 3 Score: 77.411 bits (189), Expect = 2.779e-67 Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAIKVID*LLDVYLTYVI 3128 ++F+ QF L E+ L+ IC F V Y++ WF +P A AP+ND+ FL+ L DY+ +++ A K HLWY+ EE +LFD + K+++ + D L + LT I Sbjct: 615 YIFQEQFKLTKAEITSLKTICCFIVKCYIEFWFRSPNAIEAPYNDVLFLRKLEDYKSDDKKVAELAIKKFINHLWYLGEETACFSLFDDRIENHVKKQMAQQLLENDDLQEDELTTEI 732 HSP 4 Score: 77.0258 bits (188), Expect = 2.779e-67 Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 2 Query: 2606 FAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 F + L PRDDY+EFLEL IIFLG VP + I F GA H ARWM K +Y LK+Y+ Sbjct: 558 FCKDTLNQNLPRDDYKEFLELVIIFLGGVPPKSIHFKRPGAYHLARWMCKGIYCLKIYI 616 HSP 5 Score: 25.0238 bits (53), Expect = 2.779e-67 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 2278 ALNEWGIADRVRAMSFDTS-SNTG 2346 L +W + ++V+A FDT+ SN+G Sbjct: 446 TLKDWSMLEKVQAFVFDTTASNSG 469 HSP 6 Score: 79.7221 bits (195), Expect = 7.550e-13 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 1285 LTGGKLPSLRQVLGLLLHEHKENGKTIREASTIAIESTAKFWQKGRIPTRAVQHCQA--KVESEFVVWRLRLLKKNASRKAETQKAKKAAFCSRLDDLFDIAHADALKNIKIEEDR 1626 +TG KLPS +L + + + ++S + + FW+K RIPT+ HC K+++ + WR L KN +RK+ TQ+ K+ F + L++LFDIAH DA IKI+EDR Sbjct: 118 ITGNKLPSNGDCFRVLFYNMRVVNLNLNDSSGLVADECLLFWKKARIPTQY--HCDIVRKIKNLYESWRS--LDKNKTRKSATQQCKENNFKNSLNNLFDIAHKDAFNIIKIDEDR 229 HSP 7 Score: 26.1794 bits (56), Expect = 7.550e-13 Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 1625 EFLLAQREKGRRGSMLGLD 1681 +FL QR++GR G M G+D Sbjct: 230 QFLTLQRQEGRVGYMAGVD 248
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000028508.1 (SMESG000028508.1) HSP 1 Score: 184.111 bits (466), Expect = 3.581e-119 Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 3 Query: 2775 FMFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQALIDYEVVHPXXXXXXXXXXXXHLWYISEELVGLALFDKDLSTVTKRELVSAIK 3086 +MFRSQFDLRPTEVKGLRDICTFSVSLY+KVWF APCAAT P NDLTFLQALIDYEVVHPAISKAASAKMAKHLWYISEELVGLALFDKDLST TKRELVSAIK Sbjct: 903 YMFRSQFDLRPTEVKGLRDICTFSVSLYIKVWFTAPCAATGPRNDLTFLQALIDYEVVHPAISKAASAKMAKHLWYISEELVGLALFDKDLSTTTKRELVSAIK 1006 HSP 2 Score: 158.303 bits (399), Expect = 3.581e-119 Identity = 75/79 (94.94%), Postives = 75/79 (94.94%), Query Frame = 3 Query: 2349 ANGACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMGPSSAPEVLMFKRFQSCWQFIDQASYSTGMDAKDVAAVLMD 2585 ANGACVLLEQMLGINLLSLACRHHIFELVIGAVFQT MGPSSA EVLMFKRFQSCWQFID ASYSTGMD KDVAAVLMD Sbjct: 760 ANGACVLLEQMLGINLLSLACRHHIFELVIGAVFQTCMGPSSAQEVLMFKRFQSCWQFIDPASYSTGMDDKDVAAVLMD 838 HSP 3 Score: 129.798 bits (325), Expect = 3.581e-119 Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 2 Query: 2585 SRNKLLEFAESQLQIMQPRDDYREFLELSIIFLGRVPARGIRFIASGAMHHARWMSKVLYSLKVYV 2782 +RNKLLEFAESQLQIMQPRDDYREFLELSIIFLG VPARGIRFIA GAM HARWMSKVLYSLKVY+ Sbjct: 839 TRNKLLEFAESQLQIMQPRDDYREFLELSIIFLGGVPARGIRFIAPGAMQHARWMSKVLYSLKVYM 904 HSP 4 Score: 239.965 bits (611), Expect = 2.913e-109 Identity = 119/136 (87.50%), Postives = 124/136 (91.18%), Query Frame = 1 Query: 1219 TFRMNSTRSKTKVYLLESYTEVLTGGKLPSLRQVLGLLLHEHKENGKTIREASTIAIESTAKFWQKGRIPTRAVQHCQAKVESEFVVWRLRLLKKNASRKAETQKAKKAAFCSRLDDLFDIAHADALKNIKIEEDR 1626 + ++NSTRSKTKVYLLESYTEVLTG KLPSL QVLGL LHEHKENGKTIR ASTIAIESTAKFWQK RIPTRAV HCQAK+ESEF W RLLKKNASRKAETQKAK+AAFCSRLDDLFDIAHADA KNIKIEEDR Sbjct: 484 SLKINSTRSKTKVYLLESYTEVLTGRKLPSLLQVLGLFLHEHKENGKTIRVASTIAIESTAKFWQKARIPTRAVHHCQAKLESEFDAW--RLLKKNASRKAETQKAKEAAFCSRLDDLFDIAHADAHKNIKIEEDR 617 HSP 5 Score: 114.005 bits (284), Expect = 2.913e-109 Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 3 Query: 1686 EQRASEARDKLAARRHRAVCDQQQLDAKAXXXXXXXXXXXXXXXXXXXXXXMQGATGGVHTPVRSQRKRGRLEVVSPGLAAML 1934 EQRASEARDKLAARRHRAVCDQQQLDAKAELSELDSHSNSSTSES ESGDEMQG TG VHTPVRSQRKRGRLEVVSPGLAAML Sbjct: 643 EQRASEARDKLAARRHRAVCDQQQLDAKAELSELDSHSNSSTSESYESGDEMQGTTGRVHTPVRSQRKRGRLEVVSPGLAAML 725 HSP 6 Score: 64.3142 bits (155), Expect = 2.913e-109 Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 Query: 1913 PWVSCNAGRTKVSDRKAVYLVAETAKSLGQDVKDLALNRS 2032 P ++ RTKVSDRKAVYLVAETAKSLGQD+KDLALNRS Sbjct: 719 PGLAAMLDRTKVSDRKAVYLVAETAKSLGQDMKDLALNRS 758 HSP 7 Score: 41.9726 bits (97), Expect = 2.913e-109 Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 2 Query: 1625 EFLLAQREKGRRGSMLGLDV 1684 +FL+AQREKGRRGSMLGLDV Sbjct: 618 KFLIAQREKGRRGSMLGLDV 637
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000034492.1 (SMESG000034492.1) HSP 1 Score: 147.902 bits (372), Expect = 3.212e-44 Identity = 86/141 (60.99%), Postives = 101/141 (71.63%), Query Frame = 3 Query: 3870 LVFHFYNQTIKVTRHAKLNQRSVLYYFGKLQSVLVGENKSQILGFRRLSSRSTSKLVFIKIKYYQRYLFFDLWKLTSVENK---RPNSA--------SNHFIRTSPSANEIKSSYINVXXXXXXXXXXXXXDNEMACGTLF 4259 + F ++NQ+IKVTRHA LNQR+V+YYFGK+QSVL GENKSQ+L FRRLSS TSKL+F+KIKYY+ YLF DLWKL VE+K PN SN IRT SANE SY NV+I + KTIS + DNE AC TLF Sbjct: 1 MTFDYFNQSIKVTRHANLNQRAVIYYFGKIQSVLEGENKSQMLTFRRLSSTLTSKLLFVKIKYYRGYLFSDLWKLIFVEDKLVQTPNHGIENKCLPESNQVIRTPKSANETNFSYSNVSIPNNKTISLTLNDNEFACITLF 141 HSP 2 Score: 52.373 bits (124), Expect = 3.212e-44 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 1 Query: 4264 LLYESQLISKSSTNQSRTPRPWSGYEETFV 4353 +LYES+L+SKSS NQ RTP PW GYEETFV Sbjct: 158 VLYESRLLSKSSVNQIRTPMPWIGYEETFV 187
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000031866.1 (SMESG000031866.1) HSP 1 Score: 151.369 bits (381), Expect = 2.694e-41 Identity = 88/147 (59.86%), Postives = 104/147 (70.75%), Query Frame = 3 Query: 3837 QII*LINETNQLVFHFYNQTIKVTRHAKLNQRSVLYYFGKLQSVLVGENKSQILGFRRLSSRSTSKLVFIKIKYYQRYLFFDLWKLTSVENKRPN-----------SASNHFIRTSPSANEIKSSYINVXXXXXXXXXXXXXDNEMA 4244 Q+I LINETN + F + NQ+I+VTRHA LNQ +VLYYFG++Q VL GENKSQ+L FRR SS STSKLVF+KIKYY+RYLF DLWK+ VE+K SN IRT PSANEI SY NV+I + K ISS + DNE A Sbjct: 248 QVIRLINETNLVTFGYLNQSIQVTRHANLNQSAVLYYFGRIQLVLEGENKSQLLTFRRFSSTSTSKLVFVKIKYYRRYLFSDLWKIIFVEDKLVQISHHSIENKYLPESNQVIRTPPSANEINLSYTNVSIPNNKIISSTLNDNEFA 394 HSP 2 Score: 39.2762 bits (90), Expect = 2.694e-41 Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 1 Query: 3772 EKSVYENRTDSDNKGVKIHSNHKL 3843 EKSVYEN TDSDN+ VKIHSN ++ Sbjct: 226 EKSVYENGTDSDNQWVKIHSNQQV 249
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000011497.1 (SMESG000011497.1) HSP 1 Score: 92.4337 bits (228), Expect = 3.461e-21 Identity = 42/86 (48.84%), Postives = 64/86 (74.42%), Query Frame = 3 Query: 3849 LINETNQLVFHFYNQTIKVTRHAKLNQRSVLYYFGKLQSVLVGENKSQILGFRRLSSRSTSKLVFIKIKYYQRYLFFDLWKLTSVE 4106 LINETN+++FH+ NQTI VTR NQ++V+YY GK Q+ L +N ++++ F +L S+STSK + IKI++Y+R +LW+LT V+ Sbjct: 3 LINETNRVIFHYDNQTITVTRKTDSNQKAVIYYCGKTQATLSDKNDTKVIKFYQLRSKSTSKRILIKIQHYRRKTISNLWRLTLVD 88
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Match: SMESG000014243.1 (SMESG000014243.1) HSP 1 Score: 71.633 bits (174), Expect = 1.859e-18 Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 2 Query: 1964 VYLVAETAKSLGQDVKDLALNRSTIRRQRQDHREMISGRLREEFRADVDVPLVVHWDGKMLRDLTGK--ETIDRLPILVSGKGISKLLVAAKLQSSTGKAQAEA 2269 +++VA K++G D+ L+L S+I R R+ R+ ++ +E F PL+ H+DGK+L D G+ E +DR+PI+VSG I KLL KL STG+ A Sbjct: 1 MHIVAPALKAVGVDIDTLSLPTSSIYRARKPVRKSLAQTQKELFVPTT--PLITHFDGKLLPDNDGRTEELVDRMPIVVSGLSIEKLLAIPKLPVSTGELMGNA 102 HSP 2 Score: 41.9726 bits (97), Expect = 1.859e-18 Identity = 21/53 (39.62%), Postives = 31/53 (58.49%), Query Frame = 3 Query: 2355 GACVLLEQMLGINLLSLACRHHIFELVIGAVFQTYMGPSSAPEVLMFKRFQSC 2513 GA ++++ LL LACRHHI E+V AVF + SS P++ +F +S Sbjct: 134 GAINVIQRAFDKRLLFLACRHHILEIVSAAVFDKFFK-SSGPQIALFAASKSS 185 The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit beta vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014584 ID=SMED30014584|Name=DNA-directed RNA polymerase subunit beta|organism=Schmidtea mediterranea sexual|type=transcript|length=4577bpback to top protein sequence of SMED30014584-orf-1 >SMED30014584-orf-1 ID=SMED30014584-orf-1|Name=SMED30014584-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp MFRSQFDLRPTEVKGLRDICTFSVSLYMKVWFIAPCAATAPHNDLTFLQAback to top protein sequence of SMED30014584-orf-2 >SMED30014584-orf-2 ID=SMED30014584-orf-2|Name=SMED30014584-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=151bp MNSTRSKTKVYLLESYTEVLTGGKLPSLRQVLGLLLHEHKENGKTIREASback to top Annotated Terms
The following terms have been associated with this transcript:
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