SMED30014580

Overview
NameSMED30014580
Smed IDSMED30014580
Length (bp)1544
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30014580 (SMED30014580) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30014580 (SMED30014580) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30014580 (SMED30014580) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30014580 (SMED30014580) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30014580

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30014580h1SMcG0020870 Contig3068GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30014580h1SMcG0020869 Contig3068GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
nervous systemSMED30014580h1SMcG0020870 dd_Smed_v4_7683_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30014580h1SMcG0020870 dd_Smed_v4_7683_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30014580h1SMcG0020870 dd_Smed_v4_7683_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30014580h1SMcG0020870 dd_Smed_v4_7683_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30014580 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001810:38990..44481 -6594
v31.001810:55077..59044 -4296
Homology
[Close]
BLAST of SMED30014580 vs. Planmine SMEST
Match: SMESG000016968.1 (SMESG000016968.1)

HSP 1 Score: 749.969 bits (1935), Expect = 0.000e+0
Identity = 409/456 (89.69%), Postives = 426/456 (93.42%), Query Frame = 3 
Query:   57 LESMEKYSKIKYQIFKMANDIFEYRSTDVILLESTGIYLENMLDREFLDKNKIIGFNKKFSETPHLKIWERKEGHGYSFLVSFNIPLSHSEYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLLCKVIRREHISNAFKLLLAIADEEFLCEQLKSYYLNENNSDEKKIYSSFILINTEMIAPQFNLMVMDNLINNKREFDKSYLRFSEEKILSDLVKKIVNHLKHCKNSLTDENKEPSLLLTYQISREVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILRXXXXXXXXXXXXXXXXXNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRVSEVILYCLCNIAQDGKLSGMQGWRPILYEYYKECKYSDEIKLASAVSICLLLGNGESQRXXXXXXXXXXXXLNMKKCDLNKSDRTDYLGFTLEEIEGALAMASL 1424
            +ESMEKYSKI YQIFKMANDIF+YR TDVILLESTGIYLENM DREFLDKNKII FNKKFS+T HLK+ ERKEGHGYSFLVSFNIPLSH+EYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLL KVIRREHISNAFKL LAIADEEFLCEQLKS Y     S+EK IYSSFILI T+M APQFNLMVMDNLI+ KR+ +KSYL F EEKILSDLVKKIVNHLKHCK+SLTDENKEPSLLLTYQISR+VINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSR+SEVILYCLCNIAQDGKLS  QGW+PILYEYYKECKYSDEIKLASAVSICLLLGNGESQREYKSEIEEIK YL   K ++NKS R D+LGFTLEEIEGALAMASL
Sbjct:    1 MESMEKYSKITYQIFKMANDIFKYRITDVILLESTGIYLENMRDREFLDKNKIIAFNKKFSKTQHLKMLERKEGHGYSFLVSFNIPLSHAEYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLLRKVIRREHISNAFKLPLAIADEEFLCEQLKSCY-----SNEKNIYSSFILIITKMAAPQFNLMVMDNLIDIKRDCNKSYLGFFEEKILSDLVKKIVNHLKHCKSSLTDENKEPSLLLTYQISRDVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRISEVILYCLCNIAQDGKLSDRQGWKPILYEYYKECKYSDEIKLASAVSICLLLGNGESQREYKSEIEEIKRYLTDIKYNINKSGRIDFLGFTLEEIEGALAMASL 451
[Close]
BLAST of SMED30014580 vs. Planmine SMEST
Match: SMESG000016968.1 (SMESG000016968.1)

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 407/453 (89.85%), Postives = 423/453 (93.38%), Query Frame = 3 
Query:   66 MEKYSKIKYQIFKMANDIFEYRSTDVILLESTGIYLENMLDREFLDKNKIIGFNKKFSETPHLKIWERKEGHGYSFLVSFNIPLSHSEYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLLCKVIRREHISNAFKLLLAIADEEFLCEQLKSYYLNENNSDEKKIYSSFILINTEMIAPQFNLMVMDNLINNKREFDKSYLRFSEEKILSDLVKKIVNHLKHCKNSLTDENKEPSLLLTYQISREVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILRXXXXXXXXXXXXXXXXXNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRVSEVILYCLCNIAQDGKLSGMQGWRPILYEYYKECKYSDEIKLASAVSICLLLGNGESQRXXXXXXXXXXXXLNMKKCDLNKSDRTDYLGFTLEEIEGALAMASL 1424
            MEKYSKI YQIFKMANDIF+YR TDVILLESTGIYLENM DREFLDKNKII FNKKFS+T HLK+ ERKEGHGYSFLVSFNIPLSH+EYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLL KVIRREHISNAFKL LAIADEEFLCEQLKS Y     S+EK IYSSFILI T+M APQFNLMVMDNLI+ KR+ +KSYL F EEKILSDLVKKIVNHLKHCK+SLTDENKEPSLLLTYQISR+VINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSR+SEVILYCLCNIAQDGKLS  QGW+PILYEYYKECKYSDEIKLASAVSICLLLGNGESQREYKSEIEEIK YL   K ++NKS R D+LGFTLEEIEGALAMASL
Sbjct:    1 MEKYSKITYQIFKMANDIFKYRITDVILLESTGIYLENMRDREFLDKNKIIAFNKKFSKTQHLKMLERKEGHGYSFLVSFNIPLSHAEYEFYNNEDITLYELEIPKLFTGLDGIKCTNKHLLRKVIRREHISNAFKLPLAIADEEFLCEQLKSCY-----SNEKNIYSSFILIITKMAAPQFNLMVMDNLIDIKRDCNKSYLGFFEEKILSDLVKKIVNHLKHCKSSLTDENKEPSLLLTYQISRDVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRISEVILYCLCNIAQDGKLSDRQGWKPILYEYYKECKYSDEIKLASAVSICLLLGNGESQREYKSEIEEIKRYLTDIKYNINKSGRIDFLGFTLEEIEGALAMASL 448
[Close]
BLAST of SMED30014580 vs. Planmine SMEST
Match: SMESG000016970.1 (SMESG000016970.1)

HSP 1 Score: 448.743 bits (1153), Expect = 1.074e-152
Identity = 265/362 (73.20%), Postives = 299/362 (82.60%), Query Frame = 3 
Query:  339 YNNEDITLYELEIPKLFTGLDGIKCTNKH--LLCKVIRREHISNAFKLLLAIADEEFLCEQLKSYYLNENNSDEKKIYSSFILINTEMIAPQFNLMVMDNLINNKREFDKSYLRFSEEKILSDLVKKIVNHLKHCKNSLTDENKEPSLLLTYQISREVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILRXXXXXXXXXXXXXXXXXNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRVSEVILYCLCNIAQDGKLSGMQGWRPILYEYYKECKYSDEIKLASAVSICLLLGNGESQRXXXXXXXXXXXXLNMKKCDLNKSDRTDYLGFTLEEIEGALAMA 1418
            +N  D       I +LFT L+GIK TNKH   LC+ I    I NAFK+ +   D++F  E+L+SYY NENNSDE   Y+ FILINT M AP  ++M+++N ++ K + ++SYL FSEE+ILS     I NHL+HCK+SLTD NKEPSLLLTYQISR+V+NVGYKQ EYYERAI +YSMSNL+R KEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASP++A YI DIFATIMKYLEILQPKSNLDMI SR+SEVILYCLCNIAQ GK S  QGWRPILY+YYKECKYSDEIK ASAVSICLLL NGESQREYKSEIEEIKIYLN KK ++NKS RTDYLGFTLEEIEGALAMA
Sbjct:  224 FNITDFPSVASAIQELFTRLEGIKYTNKHGQRLCEAILW-VICNAFKMSVVEIDKKFWFEKLQSYYSNENNSDEINYYALFILINTGMAAPPLSMMLLNNFMDIKEKGNQSYLGFSEEEILSVKAIGITNHLEHCKSSLTDGNKEPSLLLTYQISRDVLNVGYKQNEYYERAINSYSMSNLERLKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPRLASYIGDIFATIMKYLEILQPKSNLDMIASRISEVILYCLCNIAQGGKSSDRQGWRPILYKYYKECKYSDEIKFASAVSICLLLRNGESQREYKSEIEEIKIYLNEKKYNINKSGRTDYLGFTLEEIEGALAMA 584
[Close]
BLAST of SMED30014580 vs. Planmine SMEST
Match: SMESG000016970.1 (SMESG000016970.1)

HSP 1 Score: 448.743 bits (1153), Expect = 1.403e-152
Identity = 265/362 (73.20%), Postives = 299/362 (82.60%), Query Frame = 3 
Query:  339 YNNEDITLYELEIPKLFTGLDGIKCTNKH--LLCKVIRREHISNAFKLLLAIADEEFLCEQLKSYYLNENNSDEKKIYSSFILINTEMIAPQFNLMVMDNLINNKREFDKSYLRFSEEKILSDLVKKIVNHLKHCKNSLTDENKEPSLLLTYQISREVINVGYKQKEYYERAIKNYSMSNLKRFKEKFEQILRXXXXXXXXXXXXXXXXXNIVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRVSEVILYCLCNIAQDGKLSGMQGWRPILYEYYKECKYSDEIKLASAVSICLLLGNGESQRXXXXXXXXXXXXLNMKKCDLNKSDRTDYLGFTLEEIEGALAMA 1418
            +N  D       I +LFT L+GIK TNKH   LC+ I    I NAFK+ +   D++F  E+L+SYY NENNSDE   Y+ FILINT M AP  ++M+++N ++ K + ++SYL FSEE+ILS     I NHL+HCK+SLTD NKEPSLLLTYQISR+V+NVGYKQ EYYERAI +YSMSNL+R KEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASP++A YI DIFATIMKYLEILQPKSNLDMI SR+SEVILYCLCNIAQ GK S  QGWRPILY+YYKECKYSDEIK ASAVSICLLL NGESQREYKSEIEEIKIYLN KK ++NKS RTDYLGFTLEEIEGALAMA
Sbjct:  229 FNITDFPSVASAIQELFTRLEGIKYTNKHGQRLCEAILW-VICNAFKMSVVEIDKKFWFEKLQSYYSNENNSDEINYYALFILINTGMAAPPLSMMLLNNFMDIKEKGNQSYLGFSEEEILSVKAIGITNHLEHCKSSLTDGNKEPSLLLTYQISRDVLNVGYKQNEYYERAINSYSMSNLERLKEKFEQILREKLTILTKLEEKEETTLNIVCNTFTICGQFHASPRLASYIGDIFATIMKYLEILQPKSNLDMIASRISEVILYCLCNIAQGGKSSDRQGWRPILYKYYKECKYSDEIKFASAVSICLLLRNGESQREYKSEIEEIKIYLNEKKYNINKSGRTDYLGFTLEEIEGALAMA 589
The following BLAST results are available for this feature:
BLAST of SMED30014580 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014580 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000016968.10.000e+089.69SMESG000016968.1[more]
SMESG000016968.10.000e+089.85SMESG000016968.1[more]
SMESG000016970.11.074e-15273.20SMESG000016970.1[more]
SMESG000016970.11.403e-15273.20SMESG000016970.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014580 ID=SMED30014580|Name=SMED30014580|organism=Schmidtea mediterranea sexual|type=transcript|length=1544bp
GTTAAATATGATTGAAAAGTGTATTTCAAAATTAATTAAATATTCTGAGA
AATATTTTGGAAAGTATGGAAAAATATTCAAAAATTAAATATCAGATTTT
CAAAATGGCGAATGATATTTTTGAATATCGGAGCACGGATGTGATACTCC
TCGAATCAACAGGGATATATCTCGAGAACATGCTAGACAGGGAGTTTCTG
GACAAAAATAAAATAATTGGATTCAATAAAAAATTCAGCGAAACTCCGCA
TTTAAAGATATGGGAACGAAAGGAGGGACACGGGTATAGCTTCTTGGTAT
CATTTAACATCCCTTTGTCACATTCGGAATATGAATTTTACAATAATGAA
GATATTACACTTTATGAATTGGAGATTCCTAAATTATTTACTGGACTCGA
CGGCATAAAATGCACAAATAAACATCTACTGTGCAAGGTCATTCGGCGTG
AACACATTTCAAACGCTTTCAAATTACTACTAGCAATAGCTGATGAAGAA
TTCTTGTGTGAACAATTGAAAAGTTATTATTTAAATGAAAACAATTCAGA
TGAAAAAAAAATATATTCATCATTTATTCTAATAAACACCGAGATGATAG
CCCCCCAGTTTAATCTGATGGTGATGGATAACCTCATTAATAATAAACGG
GAGTTCGACAAATCTTATCTCAGATTTTCTGAAGAGAAAATATTATCCGA
TCTCGTTAAAAAGATTGTGAATCATTTGAAACATTGCAAAAATTCATTGA
CTGATGAAAACAAAGAGCCAAGTCTGCTGCTCACCTATCAAATATCAAGG
GAAGTCATAAATGTTGGATATAAACAAAAGGAATATTACGAAAGAGCAAT
TAAAAATTATTCAATGTCAAATCTGAAAAGATTTAAAGAAAAATTTGAAC
AAATATTGCGCGAAAAGTTGACGATTCTAACAAAATTGGAGGAGAAAGAG
GAGACAACTTTGAATATCGTGTGCAACACCTTCACCATTTGTGGACAGTT
TCATGCCTCTCCACAAATGGCCCCCTATATTAGTGACATATTTGCAACCA
TAATGAAATATCTGGAAATCCTGCAACCGAAATCAAATCTAGATATGATT
ACGTCACGCGTCAGTGAAGTCATCCTGTATTGCTTATGTAATATAGCTCA
AGACGGCAAATTGAGTGGCATGCAAGGCTGGAGGCCAATTCTTTATGAAT
ATTACAAAGAATGCAAATATTCAGATGAGATCAAACTTGCATCGGCAGTT
TCCATTTGTTTGCTGCTGGGAAATGGGGAGAGTCAACGAGAATATAAATC
CGAAATCGAGGAGATCAAGATATATTTGAATATGAAAAAATGTGATTTAA
ATAAATCCGACAGAACTGATTATTTGGGATTTACACTGGAAGAGATCGAG
GGGGCCTTAGCTATGGCATCATTGTGATTGACTTTCATTTATTTTATATG
GTAATGAATATTTATTCTTTCAGATTATATTTAAACTTGATTATTTTTAA
TCAGAATATTTTGAAAATATATTTCAATGCTTTTTCAAAAAAAA
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protein sequence of SMED30014580-orf-1

>SMED30014580-orf-1 ID=SMED30014580-orf-1|Name=SMED30014580-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=454bp
MEKYSKIKYQIFKMANDIFEYRSTDVILLESTGIYLENMLDREFLDKNKI
IGFNKKFSETPHLKIWERKEGHGYSFLVSFNIPLSHSEYEFYNNEDITLY
ELEIPKLFTGLDGIKCTNKHLLCKVIRREHISNAFKLLLAIADEEFLCEQ
LKSYYLNENNSDEKKIYSSFILINTEMIAPQFNLMVMDNLINNKREFDKS
YLRFSEEKILSDLVKKIVNHLKHCKNSLTDENKEPSLLLTYQISREVINV
GYKQKEYYERAIKNYSMSNLKRFKEKFEQILREKLTILTKLEEKEETTLN
IVCNTFTICGQFHASPQMAPYISDIFATIMKYLEILQPKSNLDMITSRVS
EVILYCLCNIAQDGKLSGMQGWRPILYEYYKECKYSDEIKLASAVSICLL
LGNGESQREYKSEIEEIKIYLNMKKCDLNKSDRTDYLGFTLEEIEGALAM
ASL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 269..289