SMED30014569

Overview


Name	SMED30014569
Smed ID	SMED30014569
Length (bp)	728

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30014569 (SMED30014569) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30014569 (SMED30014569) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30014569 (SMED30014569) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30014569 (SMED30014569) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30014569

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30014569	SMESG000021079.1	SmedASXL_011123	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30014569	SMESG000021079.1	SmedASXL_011123	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
posterior side	SMED30014569	SMESG000021079.1	dd_Smed_v4_5027_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
posterior muscle cell	SMED30014569	SMESG000021079.1	dd_Smed_v4_5027_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30014569 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000842:40933..41836 -	3484

Homology

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BLAST of SMED30014569 vs. Ensembl Human
Match: EXOSC4 (exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189])

HSP 1 Score: 67.0106 bits (162), Expect = 1.132e-12
Identity = 39/134 (29.10%), Postives = 67/134 (50.00%), Query Frame = -1

Query:  249 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRF--------APFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDIL 620
            K+     +F+ ADGS+++E G TK +  VY P E+R     ++  R         A FS   R +  + +     +   ++ +  +AI    H  S+I+IY+ VL  DG   +A +  A+LA++DA + M D +
Sbjct:   24 KIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFV 157

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BLAST of SMED30014569 vs. Ensembl Human
Match: EXOSC6 (exosome component 6 [Source:HGNC Symbol;Acc:HGNC:19055])

HSP 1 Score: 56.9954 bits (136), Expect = 4.538e-9
Identity = 43/146 (29.45%), Postives = 73/146 (50.00%), Query Frame = -1

Query:  243 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIE--------------------LRSEEQLSVTVRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG 617
            ++  + + S A GS+++E G TKV+C V  P +                    LR   +L    R APF+   R       + R +A  +Q +L  A+    +  +++E+  ++L D G A +A +T A+LAL DA V+MYD+++G
Sbjct:   39 VYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRG--RLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVG 182

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BLAST of SMED30014569 vs. Ensembl Celegans
Match: exos-4.1 (Putative exosome complex component RRP41 [Source:UniProtKB/Swiss-Prot;Acc:Q17533])

HSP 1 Score: 62.003 bits (149), Expect = 2.408e-11
Identity = 38/122 (31.15%), Postives = 67/122 (54.92%), Query Frame = -1

Query:  252 NADGSSFVEYGETKVVCTVYSPIELRS----EEQLSVTVRFAPFSQPSRLKYVNDT-----DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDI 590
            NA+GS ++E+G TKV+C VY P E +S    E++ ++  +++  ++ S L+  N T      T I++ ++ +  S I       S+++I+  V+  DG   +A +   SLAL DA + M  I
Sbjct:   31 NAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSA-TKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGI 151

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BLAST of SMED30014569 vs. Ensembl Fly
Match: Ski6 (gene:FBgn0032487 transcript:FBtr0334755)

HSP 1 Score: 62.3882 bits (150), Expect = 2.014e-11
Identity = 41/125 (32.80%), Postives = 66/125 (52.80%), Query Frame = -1

Query:  246 SIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSV---TVRFAPFSQPSRLKYVNDTDTRIAKF---VQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILI 602
             +F   DGS+++E G TKV+  VY P + +  +  SV       A FS   R K     D +  +F   +Q +L +AI    +  S+I+IY+ VL DDG   +  +  A+LALIDA + + + ++
Sbjct:   31 GVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER-KNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIV 154

[Close]

BLAST of SMED30014569 vs. Ensembl Fly
Match: Ski6 (gene:FBgn0032487 transcript:FBtr0080483)

HSP 1 Score: 62.3882 bits (150), Expect = 2.014e-11
Identity = 41/125 (32.80%), Postives = 66/125 (52.80%), Query Frame = -1

Query:  246 SIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSV---TVRFAPFSQPSRLKYVNDTDTRIAKF---VQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILI 602
             +F   DGS+++E G TKV+  VY P + +  +  SV       A FS   R K     D +  +F   +Q +L +AI    +  S+I+IY+ VL DDG   +  +  A+LALIDA + + + ++
Sbjct:   31 GVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFSTAER-KNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIV 154

[Close]

BLAST of SMED30014569 vs. Ensembl Fly
Match: Mtr3 (gene:FBgn0036916 transcript:FBtr0074918)

HSP 1 Score: 59.3066 bits (142), Expect = 4.428e-10
Identity = 34/131 (25.95%), Postives = 68/131 (51.91%), Query Frame = -1

Query:  243 FVNSSIFSNADGSSFVEYGETKVVCTVYSPIEL-RSEEQ------LSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG 614
            F+ + + +   GS+++EYG TKV+  V  P EL R+  +      L+  V FA FS    L  V + +  ++  +  ++   +  +   + +++I +++L+DDG   S  I C  +AL++  +  YD++  
Sbjct:   51 FIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCYVNFAAFST-GDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAINCCGVALVECGISTYDLITA 180

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BLAST of SMED30014569 vs. Ensembl Zebrafish
Match: exosc6 (exosome component 6 [Source:NCBI gene;Acc:326786])

HSP 1 Score: 95.5153 bits (236), Expect = 3.260e-23
Identity = 67/241 (27.80%), Postives = 121/241 (50.21%), Query Frame = -1

Query:   15 ESISNFHYVKKSDD--KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIEL-RSEE------QLSVTVRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQS--------------ISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDAL-KMYEVVKIHLKKSVEIK 662
            ++ S+   V+ + D   +F    + S A GS+++E G TK++C+VY P E  R +E      +L    R APFS   R  ++  ++ R ++  +  SL   +    +  S+I++ +MVL +DG   +  +TCAS+AL DA ++MYDI++G  +    N    + +  +               +++A+LPNL Q++ L +    G    + L +      D   K+Y VV+  L ++V+ K
Sbjct:   28 KAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNAD---GEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKK 265

[Close]

Query:   15 ESISNFHYVKKSDD--KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIEL-RSEE------QLSVTVRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQS--------------ISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDAL-KMYEVVKIHLKKSVEIK 662
            ++ S+   V+ + D   +F    + S A GS+++E G TK++C+VY P E  R +E      +L    R APFS   R  ++  ++ R ++  +  SL   +    +  S+I++ +MVL +DG   +  +TCAS+AL DA ++MYDI++G  +    N    + +  +               +++A+LPNL Q++ L +    G    + L +      D   K+Y VV+  L ++V+ K
Sbjct:   28 KAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNAD---GEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKK 265

[Close]

BLAST of SMED30014569 vs. Ensembl Zebrafish
Match: exosc4 (exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1702])

HSP 1 Score: 67.0106 bits (162), Expect = 6.933e-13
Identity = 40/132 (30.30%), Postives = 69/132 (52.27%), Query Frame = -1

Query:  255 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVR--------FAPFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYD 620
            K+    S+F+ ADGS+++E G TK +  VY P E+R     S+  R         A FS   R +  + +   + ++  ++ +  +A+    +  S+I+IY+ +L  DG   SA +  A+LAL+DA + M D
Sbjct:   24 KVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGNYSACVNAATLALVDAGIPMRD 155

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BLAST of SMED30014569 vs. Ensembl Zebrafish
Match: exosc5 (exosome component 5 [Source:ZFIN;Acc:ZDB-GENE-060503-675])

HSP 1 Score: 49.6766 bits (117), Expect = 7.208e-7
Identity = 31/123 (25.20%), Postives = 59/123 (47.97%), Query Frame = -1

Query:  240 NSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 608
              S+ S  DGSS    G+T ++  VY P E++  +++          QP ++   +  +    + V+ +  +A+  + H  S + + L V++DDG   S  +  A +AL+DA + M  +   V
Sbjct:   20 EQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQP-KMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSV 141

[Close]

Query:  240 NSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 608
              S+ S  DGSS    G+T ++  VY P E++  +++          QP ++   +  +    + V+ +  +A+  + H  S + + L V++DDG   S  +  A +AL+DA + M  +   V
Sbjct:   20 EQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQP-KMGLPSVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSV 141

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BLAST of SMED30014569 vs. Ensembl Xenopus
Match: ttyh1 (tweety family member 1 [Source:Xenbase;Acc:XB-GENE-940450])

HSP 1 Score: 83.5741 bits (205), Expect = 1.521e-18
Identity = 55/180 (30.56%), Postives = 95/180 (52.78%), Query Frame = -1

Query:  138 LFVNSSIFSNADGSSFVEYGE--TKVVCTVYSPIEL-----RSEEQ--LSVTVRFAPFSQ--PSRLKYVNDTDTRIAKF-VQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXX--------XXXXXXNQSISVAVLPNLRQIANLM 617
            +FV + + S A GS+++E G   TKV+C V+ P E      R+E +  L   +R+APFS+  P           R A   +Q SL  A+    +  +++ ++++VL D G A  A ++CASLAL DA ++M+D+ +G  ++     E        E       ++S+++LP L Q++ L+
Sbjct:   43 VFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPTLNQVSGLI 222

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BLAST of SMED30014569 vs. Ensembl Xenopus
Match: ENSXETT00000012729.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:63608713:63610133:1 gene:ENSXETG00000005067.1 transcript:ENSXETT00000012729.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.5286 bits (127), Expect = 5.051e-8
Identity = 35/132 (26.52%), Postives = 68/132 (51.52%), Query Frame = -1

Query:  135 QLSVTVRFAPFS---QPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXX------XXXXXNQSISVAVLPNLRQIANLMS 503
            +L   +R+APFS     S       +  +    +Q SL  A+   ++  +++ ++++VL D G A  A ++CASLAL DA ++M+++ +G  ++     E           R  ++S+++LP L Q++   S
Sbjct:   76 RLFCDLRWAPFSCHVPWSGSCPAGPSPHQAGLQLQESLEPAVQLDHYPRAEVIVWVLVLEDRGSALPAPVSCASLALADAGIEMFNLALGCGLSCSPGGELLLDPDDEEAGRGGTMSLSLLPTLNQVSAWAS 207

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BLAST of SMED30014569 vs. Ensembl Xenopus
Match: EXOSC5 (exosome component 5 [Source:NCBI gene;Acc:100170617])

HSP 1 Score: 47.7506 bits (112), Expect = 3.841e-6
Identity = 31/122 (25.41%), Postives = 57/122 (46.72%), Query Frame = -1

Query:  240 SIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQP-SRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 602
            S+ S  DGS+    G+T V+  VY P E++   ++          +P + L  + + +    + ++ +  S I  S H  + I I L +++D G   S  +  A + L+DA + M  +  GV
Sbjct:   16 SLLSRPDGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNQE--QLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRALFCGV 135

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BLAST of SMED30014569 vs. Ensembl Xenopus
Match: kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2 [Source:Xenbase;Acc:XB-GENE-943535])

HSP 1 Score: 46.595 bits (109), Expect = 8.781e-6
Identity = 24/96 (25.00%), Postives = 49/96 (51.04%), Query Frame = -1

Query:  240 SEEQLSVTVRFAPFSQPSRLKY-----VNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 512
            +   L   + +APFS+  R  +        +  +    +Q SL  A+    +   ++ ++++VL D G    A ++CASL L DA ++M+++++G 
Sbjct:   37 TRGHLLCDLHWAPFSR--RGPWSGSCPAGPSPHQAGLQLQESLELAMRLDRYPRGEVIVWVLVLEDRGSVLPATVSCASLPLADAGIEMFNLVLGC 130

[Close]

BLAST of SMED30014569 vs. Ensembl Mouse
Match: Exosc4 (exosome component 4 [Source:MGI Symbol;Acc:MGI:1923576])

HSP 1 Score: 66.6254 bits (161), Expect = 9.110e-13
Identity = 39/134 (29.10%), Postives = 67/134 (50.00%), Query Frame = -1

Query:  249 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRF--------APFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDIL 620
            K+     +F+ ADGS+++E G TK +  VY P E+R     ++  R         A FS   R +  + +     +   ++ +  +AI    H  S+I+IY+ VL  DG   +A +  A+LA++DA + M D +
Sbjct:   24 KIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFV 157

[Close]

BLAST of SMED30014569 vs. Ensembl Mouse
Match: Exosc6 (exosome component 6 [Source:MGI Symbol;Acc:MGI:1919794])

HSP 1 Score: 60.8474 bits (146), Expect = 1.306e-10
Identity = 51/198 (25.76%), Postives = 90/198 (45.45%), Query Frame = -1

Query:  111 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ------------------LSVTVRFAPFSQPSRL--KYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXX---------XXXXNQSISVAVLPNLRQIANLMSTYRCGLAE 617
            ++  + + S A GS+++E G TKV+C V  P +    E+                  L    R APFS   R   +     D  +   +Q +L  A+    +  +++E+  ++L D G A +A +T A+LAL DA V+MYD+++G  ++                   +    ++VA++P L Q+A L+ +   G  E
Sbjct:   39 VYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGRLLCDFRRAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGSGEGGQTE 236

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BLAST of SMED30014569 vs. Ensembl Mouse
Match: Exosc5 (exosome component 5 [Source:MGI Symbol;Acc:MGI:107889])

HSP 1 Score: 47.3654 bits (111), Expect = 5.420e-6
Identity = 35/130 (26.92%), Postives = 61/130 (46.92%), Query Frame = -1

Query:  240 IFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ------LSVTVR----FAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 599
            + S  DGS+    G+T V+  VY P E++  ++      L V +R        ++ SR + V +T        ++ +L A+    H  + I + L V++D G   +  +  A +AL+DA V M  +  GV
Sbjct:   37 LLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNT-------CEAVVLGAL----HPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGV 155

[Close]

Query:  240 IFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ------LSVTVR----FAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 599
            + S  DGS+    G+T V+  VY P E++  ++      L V +R        ++ SR + V +T        ++ +L A+    H  + I + L V++D G   +  +  A +AL+DA V M  +  GV
Sbjct:   37 LLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNT-------CEAVVLGAL----HPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGV 155

[Close]

BLAST of SMED30014569 vs. UniProt/SwissProt
Match: sp|Q6P0I8|EXOS6_DANRE (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.461e-22
Identity = 67/241 (27.80%), Postives = 121/241 (50.21%), Query Frame = -1

Query:   15 ESISNFHYVKKSDD--KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIEL-RSEE------QLSVTVRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQS--------------ISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDAL-KMYEVVKIHLKKSVEIK 662
            ++ S+   V+ + D   +F    + S A GS+++E G TK++C+VY P E  R +E      +L    R APFS   R  ++  ++ R ++  +  SL   +    +  S+I++ +MVL +DG   +  +TCAS+AL DA ++MYDI++G  +    N    + +  +               +++A+LPNL Q++ L +    G    + L +      D   K+Y VV+  L ++V+ K
Sbjct:   28 KAPSSRQGVRGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNAD---GEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKK 265

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BLAST of SMED30014569 vs. UniProt/SwissProt
Match: sp|Q28F19|EXOS6_XENTR (Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.059e-18
Identity = 55/180 (30.56%), Postives = 95/180 (52.78%), Query Frame = -1

Query:  138 LFVNSSIFSNADGSSFVEYGE--TKVVCTVYSPIEL-----RSEEQ--LSVTVRFAPFSQ--PSRLKYVNDTDTRIAKF-VQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXX--------XXXXXXNQSISVAVLPNLRQIANLM 617
            +FV + + S A GS+++E G   TKV+C V+ P E      R+E +  L   +R+APFS+  P           R A   +Q SL  A+    +  +++ ++++VL D G A  A ++CASLAL DA ++M+D+ +G  ++     E        E       ++S+++LP L Q++ L+
Sbjct:   43 VFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPTLNQVSGLI 222

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BLAST of SMED30014569 vs. UniProt/SwissProt
Match: sp|O26779|RRP41_METTH (Exosome complex component Rrp41 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp41 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.417e-17
Identity = 60/210 (28.57%), Postives = 102/210 (48.57%), Query Frame = -1

Query:   30 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIE-----LRSEEQLSVTVRF--APFSQPSRLKYVNDTDT-RIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQ------SISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKK 617
            L + + I   ADGSS++E+G  K++  VY P E     L+  ++  +  R+  APFS   R +   D  +  I+K    +L  A+       S I++++ VL  +G    A IT AS+AL DA + M D+++        ++   + +  +       + VA+LP  R+I  L S       E+E  L  D  ++  L+++EV K  L+K
Sbjct:   29 LKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERAL--DLAVEGCLRIHEVQKEALRK 236

[Close]

BLAST of SMED30014569 vs. UniProt/SwissProt
Match: sp|A1RST0|RRP41_PYRIL (Exosome complex component Rrp41 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) OX=384616 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.370e-17
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = -1

Query:  240 VNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSE-----EQLSVTVRF--APFSQPSRLKYVNDT--DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 611
            +   I SNADGS+ V YG T  V  VY P E+        ++  + VR+  APFS     K    T  +  I+K ++ +L  A+    +  S+I++++ +L  DG    A +T ASLAL DA V M D++IGV
Sbjct:   28 ITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGV 160

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BLAST of SMED30014569 vs. UniProt/SwissProt
Match: sp|B1Y978|RRP41_PYRNV (Exosome complex component Rrp41 OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) OX=444157 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.778e-16
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = -1

Query:  240 VNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSE-----EQLSVTVRF--APFSQPSRLKYVNDT--DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 611
            ++  + SNADGS+ V YG T  V  VY P E+        ++  + VR+  APFS     K    +  +  I+K ++ +L  A+    +  S+I++++ +L  DG    A +T ASLAL DA + M D++IGV
Sbjct:   28 ISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGV 160

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BLAST of SMED30014569 vs. TrEMBL
Match: V9L4C5 (Exosome complex component MTR3 (Fragment) OS=Callorhinchus milii OX=7868 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.063e-25
Identity = 65/225 (28.89%), Postives = 121/225 (53.78%), Query Frame = -1

Query:   15 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVT-------VRFAPFSQPSRLKYVNDT-DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQ-------------SISVAVLPNLRQIANLMSTYRCGLAEYEELLQWD---GPLKDALKMYEVVKIHLKKSVEIK 617
            +F  + + S ADGS + E G +K++C VY P E   +E+ S++       +RFAPFS   R  ++  + +   +  ++ SL  A+    +  S+IE+Y+MVL +DG    A +TCAS+AL +A ++M+D+++G ++    +    +    +             S++VA+LP L QI+ L+S+      E++E +  +     ++   K+Y VV+  L +SV+ +
Sbjct:   16 VFARAGLLSQADGSVYAECGRSKLLCAVYGPRESERKEERSMSRANLLCELRFAPFSCKKRSAWIQGSLEKEYSSILEQSLRPAVCLHKYPRSQIEVYVMVLENDGSTLGAALTCASMALAEAGIEMFDVVVGCSLRQAGDVSLLDPTALEEYNAADCKGINNGSLTVALLPTLNQISGLVSS-----GEWKEQISVEAIKACIEGCQKLYSVVQQCLTRSVKKR 235

[Close]

BLAST of SMED30014569 vs. TrEMBL
Match: H3CEF3 (Exosome component 6 OS=Tetraodon nigroviridis OX=99883 PE=4 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.177e-25
Identity = 66/214 (30.84%), Postives = 110/214 (51.40%), Query Frame = -1

Query:   21 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMS-------TYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVE 617
            +FV   + S A GS+++E G TK++C VY P E   +++       L+  VRFAPFS P R  ++  +  R  +  +  SL  A+    +  S+IE++L+VL + G   +  +TCAS+AL DA + MYD+++G ++         +    + ++VA LP+L QI+ L S       T R G+            ++   K+Y VV+  L + V 
Sbjct:   36 VFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVRFAPFSCPERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVLAHAVTCASVALADAGIQMYDLVLGCSLRQDGASFVADPTYAEELTVAFLPSLNQISGLRSDGEMAEDTLRAGVRTC---------IEGCYKLYPVVRQVLSRCVR 240

[Close]

BLAST of SMED30014569 vs. TrEMBL
Match: A0A3P9J1Y9 (Exosome component 6 OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.140e-24
Identity = 68/217 (31.34%), Postives = 112/217 (51.61%), Query Frame = -1

Query:   24 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDT-DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG-----------VXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSV 617
            +FV   + S A GS+++E G+TK++C+VY P E   +++       L+  +RFAPFS P R  ++  + D   +  +Q SL  A+    +  S+IE+ +MVL + G   +  ITCASLAL DA ++MYD+++G           V+          +      ++VA LP+L Q++ L S     +AE          ++   K+Y VV+  L K+V
Sbjct:   48 VFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSCEHQGGLTVAFLPSLNQVSGLQSDGE--MAEETLTAGIRTCIEGCYKLYPVVQQALVKAV 262

[Close]

BLAST of SMED30014569 vs. TrEMBL
Match: A0A3P9L787 (RNase_PH domain-containing protein OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.971e-24
Identity = 67/217 (30.88%), Postives = 113/217 (52.07%), Query Frame = -1

Query:   24 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDT-DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG-----------VXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSV 617
            +FV   + S A GS+++E G+TK++C+VY P E   +++       L+  +RFAPFS P R  ++  + D   +  +Q SL  A+    +  S+IE+ +MVL + G   +  ITCASLAL DA ++MYD+++G           V+          ++     ++VA LP+L Q++ L S     +AE          ++   K+Y V++  L K+V
Sbjct:   48 VFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQGGLTVAFLPSLNQVSGLQSDGE--MAEETLTAGIRTCIEGCYKLYPVIQQALVKAV 262

[Close]

BLAST of SMED30014569 vs. TrEMBL
Match: H2MDQ1 (Exosome component 6 OS=Oryzias latipes OX=8090 GN=exosc6 PE=4 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.971e-24
Identity = 67/217 (30.88%), Postives = 113/217 (52.07%), Query Frame = -1

Query:   24 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDT-DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG-----------VXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSV 617
            +FV   + S A GS+++E G+TK++C+VY P E   +++       L+  +RFAPFS P R  ++  + D   +  +Q SL  A+    +  S+IE+ +MVL + G   +  ITCASLAL DA ++MYD+++G           V+          ++     ++VA LP+L Q++ L S     +AE          ++   K+Y V++  L K+V
Sbjct:   48 VFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQGGLTVAFLPSLNQVSGLQSDGE--MAEETLTAGIRTCIEGCYKLYPVIQQALVKAV 262

[Close]

BLAST of SMED30014569 vs. Ensembl Cavefish
Match: exosc6 (exosome component 6 [Source:NCBI gene;Acc:326786])

HSP 1 Score: 94.7449 bits (234), Expect = 7.084e-23
Identity = 46/133 (34.59%), Postives = 76/133 (57.14%), Query Frame = -1

Query:  243 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVT-------VRFAPFSQPSRLKYVNDTDTR-IAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG 617
            LF    + S A GSS++E G TK++C+VY P E    ++  V        +R APFS   R  ++  +  R ++  +  SL  A+    +  ++IE+ +MVL +DG   +  +TCAS+AL DA ++MYD+++G
Sbjct:   45 LFARCGLVSQAKGSSYLEAGNTKILCSVYGPREPERRDEAGVRSGRLLCDLRLAPFSCGKRGAWIQGSGERDLSLALSESLHPAVCLHRYPRAQIEVNVMVLENDGSVLAHAVTCASMALADAGIEMYDVVLG 177

[Close]

BLAST of SMED30014569 vs. Ensembl Cavefish
Match: exosc4 (exosome component 4 [Source:NCBI gene;Acc:103035194])

HSP 1 Score: 66.6254 bits (161), Expect = 7.667e-13
Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = -1

Query:  255 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVR--------FAPFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYD 620
            KL     +F+ ADGS+++E G TK +  VY P E+R     ++  R         A FS   R +  + +   + ++  ++ +  +A+    +  S+I+IY+ +L  DG   SA +  A+LAL+DA + M D
Sbjct:   24 KLQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVRGSRSRTLHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTQLYPRSQIDIYVKILQSDGGNYSACVNAATLALVDAGIPMRD 155

[Close]

BLAST of SMED30014569 vs. Ensembl Cavefish
Match: exosc5 (exosome component 5 [Source:NCBI gene;Acc:103039313])

HSP 1 Score: 46.9802 bits (110), Expect = 5.056e-6
Identity = 35/130 (26.92%), Postives = 59/130 (45.38%), Query Frame = -1

Query:  240 IFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQP----------SRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 599
            + S  DGS+    G+T V+  VY P E++  +++          QP          +R + V +T        ++ LLS +    H  S + + L V++DDG   S  +  A +AL+DA + M  +  GV
Sbjct:   21 LLSKPDGSATFLQGDTSVLAGVYGPAEVKVNKEIYDRATLEVVVQPKVGMSSVRERAREQCVRET-------CEAVLLSTL----HPRSSLTLILQVVHDDGSLLSCCLNAACMALMDAGLPMGRLFCGV 139

[Close]

BLAST of SMED30014569 vs. Ensembl Sea Lamprey
Match: exosc4 (exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1702])

HSP 1 Score: 66.2402 bits (160), Expect = 2.012e-13
Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = -1

Query:  255 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVR--------FAPFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYD 620
            K+     +F+ ADGS++VE G TK +  VY P E+R     ++  R         A FS   R +  + +     ++  ++ +  +AI    +  S+I+IY+ +L  DG    A +  A+LAL+DA + + D
Sbjct:   24 KIACRMGVFAQADGSAYVEQGNTKALAVVYGPHEMRGNRGKAMHDRALVNCQYSMATFSTGERKRRPHGDRKSIEMSMHLRQTFEAAIMTQQYPRSQIDIYVQILQSDGGNYCACVNAATLALVDAGIPLKD 155

[Close]

BLAST of SMED30014569 vs. Ensembl Yeast
Match: SKI6 (Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4) [Source:SGD;Acc:S000003427])

HSP 1 Score: 62.003 bits (149), Expect = 4.384e-12
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = -1

Query:  240 ADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSA----INFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 587
            ADGSS++E G  K++  V  P E R + Q       L+V+V    FS+  R K  +  + R+ + +Q+SL+      +  + +  + I+I + VL  DG    ++I   +LALIDA + M+D + G+
Sbjct:   36 ADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLE-IQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGI 161

[Close]

BLAST of SMED30014569 vs. Ensembl Nematostella
Match: EDO46254 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQ94])

HSP 1 Score: 85.1149 bits (209), Expect = 7.388e-20
Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = -1

Query:  249 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVR------FAPFSQPSRLKYVNDTDTRIAKF-VQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDIL 617
            +F+ + + S A GS+++E   TKV+C +Y P E    ++ S+  R      FAPFS   R K++ D + +   + V  +L  A+       ++++IY+ VL +DG A SA I CAS+AL  A ++M D++
Sbjct:   48 MFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTCEFKFAPFSCIYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDGSALSAGIICASVALAMAGIEMLDLV 177

[Close]

BLAST of SMED30014569 vs. Ensembl Nematostella
Match: EDO42491 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1D9])

HSP 1 Score: 67.3958 bits (163), Expect = 1.782e-13
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = -1

Query:  255 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYV--NDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYD 620
            K+     + S ADGS+++E G TK + TVY P E++++ +       L+V    A FS   R K    +   T ++  V+ +  +AI  + +  S+I+IY+ VL  DG    A I   +LALI+A + + D
Sbjct:   24 KMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQADGGNHVACINAVTLALINAGIPLKD 154

[Close]

BLAST of SMED30014569 vs. Ensembl Nematostella
Match: EDO43013 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZV7])

HSP 1 Score: 48.521 bits (114), Expect = 5.897e-7
Identity = 29/130 (22.31%), Postives = 62/130 (47.69%), Query Frame = -1

Query:  240 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQL----SVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 617
            +F    +   ADGSS    G+T+V+   Y P+E++  ++L    ++ V F P     ++     ++  +   +++S    +  + H  + + I + V+ + G   S  +  A LA++DA   M  ++ G+
Sbjct:   18 MFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRP-----KIGIPGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVNAACLAMMDAGFPMRCMMCGI 142

[Close]

BLAST of SMED30014569 vs. Ensembl Medaka
Match: exosc6 (exosome component 6 [Source:NCBI gene;Acc:101155271])

HSP 1 Score: 107.071 bits (266), Expect = 1.495e-27
Identity = 67/217 (30.88%), Postives = 113/217 (52.07%), Query Frame = -1

Query:   24 LFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQ-------LSVTVRFAPFSQPSRLKYVNDT-DTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIG-----------VXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSV 617
            +FV   + S A GS+++E G+TK++C+VY P E   +++       L+  +RFAPFS P R  ++  + D   +  +Q SL  A+    +  S+IE+ +MVL + G   +  ITCASLAL DA ++MYD+++G           V+          ++     ++VA LP+L Q++ L S     +AE          ++   K+Y V++  L K+V
Sbjct:   48 VFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGRLTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQGGLTVAFLPSLNQVSGLQSDGE--MAEETLTAGIRTCIEGCYKLYPVIQQALVKAV 262

[Close]

BLAST of SMED30014569 vs. Ensembl Medaka
Match: exosc4 (exosome component 4 [Source:NCBI gene;Acc:101170622])

HSP 1 Score: 64.3142 bits (155), Expect = 5.011e-12
Identity = 38/132 (28.79%), Postives = 67/132 (50.76%), Query Frame = -1

Query:  255 KLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVR--------FAPFSQPSRLK--YVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYD 620
            K+     +F+ ADGS+++E G TK +  VY P E+R     ++  R         A FS   R +  + +   T ++  ++ +  +A+    +  S+I+IY+ +L  DG   S  +  A+LA+IDA + M D
Sbjct:   24 KVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARSRALHDRAIINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRD 155

[Close]

BLAST of SMED30014569 vs. Ensembl Medaka
Match: exosc5 (exosome component 5 [Source:NCBI gene;Acc:101161262])

HSP 1 Score: 51.9878 bits (123), Expect = 7.461e-8
Identity = 33/124 (26.61%), Postives = 59/124 (47.58%), Query Frame = -1

Query:  240 VNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGV 611
               S+ S  DGS+    G+T V+  VY P E++  +++          QP ++   +  +    + V+ +   A+  + H  S + + L VL+DDG   S  +  A +AL+DA + M  +  GV
Sbjct:   16 CEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQP-KVGLPSVRERSQEQCVRETCEEALLLTLHPRSSLTLVLQVLHDDGSLLSCCLNAACMALMDAGLPMSCLFCGV 138

[Close]

BLAST of SMED30014569 vs. Planmine SMEST
Match: SMESG000021079.1 (SMESG000021079.1)

HSP 1 Score: 430.254 bits (1105), Expect = 4.566e-155
Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = -1

Query:   15 MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK 701
            MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVNINPRVNREE NNNRNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK
Sbjct:    1 MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVNINPRVNREEQNNNRNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK 229

[Close]

BLAST of SMED30014569 vs. Planmine SMEST
Match: SMESG000021079.1 (SMESG000021079.1)

HSP 1 Score: 414.075 bits (1063), Expect = 6.346e-149
Identity = 211/229 (92.14%), Postives = 212/229 (92.58%), Query Frame = -1

Query:   15 MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDILIGVXXXXXXXXXXXXXXXNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK 701
            MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDM +                NNNRNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK
Sbjct:    1 MHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADGSSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMEE---------------QNNNRNQSISVAVLPNLRQIANLMSTYRCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK 214

[Close]

BLAST of SMED30014569 vs. Planmine SMEST
Match: SMESG000040844.1 (SMESG000040844.1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.342e-7
Identity = 35/125 (28.00%), Postives = 60/125 (48.00%), Query Frame = -1

Query:  249 SNADGSSFVEYGETKVVCTVYSPIELRSEEQLS-----VTVRF-----APFSQPSRLKYVNDTDTRIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALIDANVDMYDIL 593
            S  DG   +E G TKV+ ++Y P E R+  +       ++ ++     A F+   R    ++     A  V+S +   I    +  S+I+I ++VL  DG   + +I   SLAL+DA + M D +
Sbjct:   32 SGDDGYVCLEQGNTKVIASIYGPHECRNHSEAKHDVAIISCKYSKCPTANFNAGRRYGKRDNISDLNADCVKSIMEKVIELHWYGESQIDINILVLQSDGSELAVVINAVSLALMDAGIRMKDFV 156

The following BLAST results are available for this feature:

BLAST of SMED30014569 vs. Ensembl Human
BLAST of SMED30014569 vs. Ensembl Celegans
BLAST of SMED30014569 vs. Ensembl Fly
BLAST of SMED30014569 vs. Ensembl Zebrafish
BLAST of SMED30014569 vs. Ensembl Xenopus
BLAST of SMED30014569 vs. Ensembl Mouse
BLAST of SMED30014569 vs. UniProt/SwissProt
BLAST of SMED30014569 vs. TrEMBL
BLAST of SMED30014569 vs. Ensembl Cavefish
BLAST of SMED30014569 vs. Ensembl Sea Lamprey
BLAST of SMED30014569 vs. Ensembl Yeast
BLAST of SMED30014569 vs. Ensembl Nematostella
BLAST of SMED30014569 vs. Ensembl Medaka
BLAST of SMED30014569 vs. Planmine SMEST

BLAST of SMED30014569 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2


Match Name	E-value	Identity	Description
EXOSC4	1.132e-12	29.10	exosome component 4 [Source:HGNC Symbol;Acc:HGNC:1...	[more]
EXOSC6	4.538e-9	29.45	exosome component 6 [Source:HGNC Symbol;Acc:HGNC:1...	[more]

BLAST of SMED30014569 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
exos-4.1	2.408e-11	31.15	Putative exosome complex component RRP41 [Source:...	[more]

BLAST of SMED30014569 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Ski6	2.014e-11	32.80	gene:FBgn0032487 transcript:FBtr0334755	[more]
Ski6	2.014e-11	32.80	gene:FBgn0032487 transcript:FBtr0080483	[more]
Mtr3	4.428e-10	25.95	gene:FBgn0036916 transcript:FBtr0074918	[more]

BLAST of SMED30014569 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
exosc6	3.260e-23	27.80	exosome component 6 [Source:NCBI gene;Acc:326786]	[more]
exosc6	3.260e-23	27.80	exosome component 6 [Source:NCBI gene;Acc:326786]	[more]
exosc4	6.933e-13	30.30	exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-0404...	[more]
exosc5	7.208e-7	25.20	exosome component 5 [Source:ZFIN;Acc:ZDB-GENE-0605...	[more]
exosc5	7.208e-7	25.20	exosome component 5 [Source:ZFIN;Acc:ZDB-GENE-0605...	[more]

BLAST of SMED30014569 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ttyh1	1.521e-18	30.56	tweety family member 1 [Source:Xenbase;Acc:XB-GENE...	[more]
ENSXETT00000012729.1	5.051e-8	26.52	pep primary_assembly:Xenopus_tropicalis_v9.1:1:636...	[more]
EXOSC5	3.841e-6	25.41	exosome component 5 [Source:NCBI gene;Acc:10017061...	[more]
kdelr2	8.781e-6	25.00	KDEL endoplasmic reticulum protein retention recep...	[more]

BLAST of SMED30014569 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Exosc4	9.110e-13	29.10	exosome component 4 [Source:MGI Symbol;Acc:MGI:192...	[more]
Exosc6	1.306e-10	25.76	exosome component 6 [Source:MGI Symbol;Acc:MGI:191...	[more]
Exosc5	5.420e-6	26.92	exosome component 5 [Source:MGI Symbol;Acc:MGI:107...	[more]
Exosc5	5.420e-6	26.92	exosome component 5 [Source:MGI Symbol;Acc:MGI:107...	[more]

BLAST of SMED30014569 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q6P0I8\|EXOS6_DANRE	2.461e-22	27.80	Exosome complex component MTR3 OS=Danio rerio OX=7...	[more]
sp\|Q28F19\|EXOS6_XENTR	8.059e-18	30.56	Exosome complex component MTR3 OS=Xenopus tropical...	[more]
sp\|O26779\|RRP41_METTH	2.417e-17	28.57	Exosome complex component Rrp41 OS=Methanothermoba...	[more]
sp\|A1RST0\|RRP41_PYRIL	9.370e-17	36.09	Exosome complex component Rrp41 OS=Pyrobaculum isl...	[more]
sp\|B1Y978\|RRP41_PYRNV	3.778e-16	33.83	Exosome complex component Rrp41 OS=Pyrobaculum neu...	[more]

BLAST of SMED30014569 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
V9L4C5	1.063e-25	28.89	Exosome complex component MTR3 (Fragment) OS=Callo...	[more]
H3CEF3	1.177e-25	30.84	Exosome component 6 OS=Tetraodon nigroviridis OX=9...	[more]
A0A3P9J1Y9	2.140e-24	31.34	Exosome component 6 OS=Oryzias latipes OX=8090 PE=...	[more]
A0A3P9L787	3.971e-24	30.88	RNase_PH domain-containing protein OS=Oryzias lati...	[more]
H2MDQ1	3.971e-24	30.88	Exosome component 6 OS=Oryzias latipes OX=8090 GN=...	[more]

BLAST of SMED30014569 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
exosc6	7.084e-23	34.59	exosome component 6 [Source:NCBI gene;Acc:326786]	[more]
exosc4	7.667e-13	29.55	exosome component 4 [Source:NCBI gene;Acc:10303519...	[more]
exosc5	5.056e-6	26.92	exosome component 5 [Source:NCBI gene;Acc:10303931...	[more]

BLAST of SMED30014569 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
exosc4	2.012e-13	28.79	exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-0404...	[more]

BLAST of SMED30014569 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
SKI6	4.384e-12	31.50	Exosome non-catalytic core component; involved in ...	[more]

BLAST of SMED30014569 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO46254	7.388e-20	33.85	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42491	1.782e-13	32.06	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43013	5.897e-7	22.31	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30014569 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
exosc6	1.495e-27	30.88	exosome component 6 [Source:NCBI gene;Acc:10115527...	[more]
exosc4	5.011e-12	28.79	exosome component 4 [Source:NCBI gene;Acc:10117062...	[more]
exosc5	7.461e-8	26.61	exosome component 5 [Source:NCBI gene;Acc:10116126...	[more]

BLAST of SMED30014569 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000021079.1	4.566e-155	99.56	SMESG000021079.1	[more]
SMESG000021079.1	6.346e-149	92.14	SMESG000021079.1	[more]
SMESG000040844.1	1.342e-7	28.00	SMESG000040844.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30014569 ID=SMED30014569|Name=SMED30014569|organism=Schmidtea mediterranea sexual|type=transcript|length=728bp
TGAGAAAAATATTATTTTATTTCAACAGATTTCTTTAAATGGATTTTGAC
GACCTCGTACATTTTCAGCGCGTCCTTTAACGGGCCGTCCCACTGGAGTA
ATTCCTCATATTCCGCGAGGCCGCATCGATATGTCGACATGAGATTTGCA
ATTTGTCGTAAATTCGGCAAAACTGCAACTGATATCGATTGGTTTCTGTT
ATTATTTGGTTCTTCCCTATTAACACGTGGATTGATATTGACACCGATCA
ATATGTCATACATGTCAACATTAGCATCAATCAAGGCCAATGATGCACAT
GTAATCATCGCACTTGTTGCGTGACCGTCATCATTTAAAACCATTAAATA
AATTTCGATTTTTGAATGGGCATGATTAGAAAAATTAATAGCCGATAGCA
AAGAACTTTGAACAAATTTAGCGATTCGAGTATCTGTATCATTTACATAT
TTTAGACGAGATGGTTGAGAGAATGGTGCAAATCTAACAGTTACAGACAA
CTGCTCTTCTGATCGCAGCTCTATGGGACTATAAACAGTGCAAACAACTT
TAGTTTCACCATATTCAACAAAACTTGACCCATCAGCATTGGAAAATATT
GATGAATTAACAAATAATTTATCATCAGATTTCTTCACGTAGTGAAAATT
AGAAATAGATTCCAAATCTAATGTGTCTGAAGGTCCAAAATTTCTGTGCA
TTTTTAAAAATATTAACCAGACGCCCAT

protein sequence of SMED30014569-orf-1

>SMED30014569-orf-1 ID=SMED30014569-orf-1|Name=SMED30014569-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=239bp
MGVWLIFLKMHRNFGPSDTLDLESISNFHYVKKSDDKLFVNSSIFSNADG
SSFVEYGETKVVCTVYSPIELRSEEQLSVTVRFAPFSQPSRLKYVNDTDT
RIAKFVQSSLLSAINFSNHAHSKIEIYLMVLNDDGHATSAMITCASLALI
DANVDMYDILIGVNINPRVNREEPNNNRNQSISVAVLPNLRQIANLMSTY
RCGLAEYEELLQWDGPLKDALKMYEVVKIHLKKSVEIK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000101	muscle cell
PLANA:0000142	posterior region of the whole animal
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR027408	PNPase/RNase_PH_dom_sf
IPR001247	ExoRNase_PH_dom1
IPR020568	Ribosomal_S5_D2-typ_fold

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 36..152 e-value: 3.4E-25 score: 89.1
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	G3DSA:3.30.230.70		coord: 10..231 e-value: 1.5E-37 score: 131.1
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 35..210
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 35..210
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 36..162