Trafficking protein particle complex subunit 6b
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014486 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Human
Match: TRAPPC6B (trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:HGNC:23066]) HSP 1 Score: 50.447 bits (119), Expect = 3.184e-7 Identity = 33/99 (33.33%), Postives = 48/99 (48.48%), Query Frame = 2 Query: 578 ESVEFNSGSGL-RRYSLSVLAYIGSLSIWFCSFDCEIVYVPKYA------QLNHD*L*SIGL*FQFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 E++ F G GL R++ + L I F C+ + + + NH Q+L CG+I+G L+NLGI S VTAEV ++P CKF Sbjct: 37 ENMGFRVGQGLIERFTKDTARFKDELDI--MKFICKDFWTTVFKKQIDNLRTNH----------QYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKF 123
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Human
Match: TRAPPC6B (trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:HGNC:23066]) HSP 1 Score: 46.9802 bits (110), Expect = 6.867e-6 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 ++L CG+I+G L+NLGI S VTAEV ++P CKF Sbjct: 117 KYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Fly
Match: Trs33 (gene:FBgn0266722 transcript:FBtr0083116) HSP 1 Score: 51.6026 bits (122), Expect = 8.360e-8 Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 +F+ CG+++GAL+NLGI S VTAEVQ+IP CKF Sbjct: 111 KFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKF 145
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Zebrafish
Match: trappc6bl (trafficking protein particle complex 6b-like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]) HSP 1 Score: 46.595 bits (109), Expect = 6.629e-6 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 ++L CG+I+GAL+NLG+ S VTAEV +P CKF Sbjct: 120 KYLAFSCGMIRGALSNLGLESVVTAEVSLMPSCKF 154
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Zebrafish
Match: trappc6bl (trafficking protein particle complex 6b-like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]) HSP 1 Score: 46.595 bits (109), Expect = 6.629e-6 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 ++L CG+I+GAL+NLG+ S VTAEV +P CKF Sbjct: 120 KYLAFSCGMIRGALSNLGLESVVTAEVSLMPSCKF 154
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Mouse
Match: Trappc6b (trafficking protein particle complex 6B [Source:MGI Symbol;Acc:MGI:1925482]) HSP 1 Score: 46.9802 bits (110), Expect = 1.659e-6 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 ++L CG+I+G L+NLGI S VTAEV ++P CKF Sbjct: 55 KYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKF 89
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Mouse
Match: Trappc6b (trafficking protein particle complex 6B [Source:MGI Symbol;Acc:MGI:1925482]) HSP 1 Score: 46.9802 bits (110), Expect = 4.670e-6 Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKF 853 ++L CG+I+G L+NLGI S VTAEV ++P CKF Sbjct: 117 KYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Match: A0A2B4SIV5 (Uncharacterized protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene6913 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.523e-17 Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = -1 Query: 41 LTKSYHLIKTHKDGPSIKIRPIASNTNGPTTKASWLLSKILKPLLNSVPYHLQSSDCLMARLNKSGKATHNEFNYTFSLDVVALYTSIDPCEAI 322 L + YH++KTHK GP I+IRPI SN NGPT SWLL+ +LKP+L +VP HL+SS L+ + T+ + Y S DVV+LYT I EAI Sbjct: 66 LPRFYHVVKTHKAGPDIEIRPIVSNINGPTQCISWLLANVLKPMLKNVPAHLESSLELIRCIEAGDLTTNKQLPYPCSFDVVSLYTPIPIQEAI 159
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Match: A0A016W2Z7 (Uncharacterized protein OS=Ancylostoma ceylanicum OX=53326 GN=Acey_s0002.g754 PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.442e-11 Identity = 57/184 (30.98%), Postives = 86/184 (46.74%), Query Frame = -1 Query: 41 NLSKPYVYLPSDKGGQFCVIEK------SRYCEAHSNPYKKISGMSPNTIETKIRKTGKEIAAKMNLKEKLTKS----------YHLIKTHK----------DGPSIKIRPIASNTNGPTTKASWLLSKILKPLLNSVPYHLQSSDCLMARLNKSGKATHNEFNYTFSLDVVALYTSIDPCEAI 514 NL K Y SDKGG F V+ + SR + + Y++ S + + +R T K + K+ E + + Y LIKTHK D IK+RPI S+ GP+ + SW L K+L PLL+ V H+ + ++ LN + Y S D V+LYT+++ EA+ Sbjct: 29 NLRKELRYSVSDKGGDFVVLTQTLDKKISRDNISDTTLYERSSLRDFDKVSNDLRSTIKRVLGKIMNTETVKRFIPTFPTVPTYYALIKTHKIPAGIDSQNMDERGIKVRPIISSCGGPSDRISWFLVKLLSPLLHHVAAHITNVQGFISALNNC--ELPKDVCYA-SFDAVSLYTNVNNDEAV 209
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Match: A0A016VEW2 (Reverse transcriptase domain-containing protein OS=Ancylostoma ceylanicum OX=53326 GN=Acey_s0011.g1482 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.836e-10 Identity = 58/184 (31.52%), Postives = 86/184 (46.74%), Query Frame = -1 Query: 41 NLSKPYVYLPSDKGGQFCVIEK------SRYCEAHSNPYKKISGMSPNTIETKIRKTGKEIAAK-MNLKE---------KLTKSYHLIKTHK----------DGPSIKIRPIASNTNGPTTKASWLLSKILKPLLNSVPYHLQSSDCLMARLNKSGKATHNEFNYTFSLDVVALYTSIDPCEAI 514 NL K Y SDKGG F V+ + SR + + Y++ S + + +R T K + K MN + + Y LIKTHK D IK+RPI S+ GP+ + SW L K+L PLL+ V H+ + ++ LN + Y S D V+LYT+++ EA+ Sbjct: 88 NLRKELRYSVSDKGGDFVVLTQTLDKKISRDNISDTTLYERSSLRDFDKVSNDLRSTIKRVLGKIMNTRTVKRFIPTFPTVPTYYALIKTHKIPAGIDSQNMDERGIKVRPIISSCGGPSDRISWFLVKLLSPLLHHVAAHITNVQGFISALNNC--ELPKDVCYA-SFDAVSLYTNVNNDEAV 268
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Match: A0A016VF89 (Uncharacterized protein OS=Ancylostoma ceylanicum OX=53326 GN=Acey_s0011.g1482 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.218e-10 Identity = 58/184 (31.52%), Postives = 86/184 (46.74%), Query Frame = -1 Query: 41 NLSKPYVYLPSDKGGQFCVIEK------SRYCEAHSNPYKKISGMSPNTIETKIRKTGKEIAAK-MNLKE---------KLTKSYHLIKTHK----------DGPSIKIRPIASNTNGPTTKASWLLSKILKPLLNSVPYHLQSSDCLMARLNKSGKATHNEFNYTFSLDVVALYTSIDPCEAI 514 NL K Y SDKGG F V+ + SR + + Y++ S + + +R T K + K MN + + Y LIKTHK D IK+RPI S+ GP+ + SW L K+L PLL+ V H+ + ++ LN + Y S D V+LYT+++ EA+ Sbjct: 88 NLRKELRYSVSDKGGDFVVLTQTLDKKISRDNISDTTLYERSSLRDFDKVSNDLRSTIKRVLGKIMNTRTVKRFIPTFPTVPTYYALIKTHKIPAGIDSQNMDERGIKVRPIISSCGGPSDRISWFLVKLLSPLLHHVAAHITNVQGFISALNNC--ELPKDVCYA-SFDAVSLYTNVNNDEAV 268
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Match: A0A016S753 (Uncharacterized protein OS=Ancylostoma ceylanicum OX=53326 GN=Acey_s0283.g1299 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.003e-9 Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = -1 Query: 35 YLPSDKGGQFCVIEKS------RYCEAHSNPYKKISGMSPNTIETKIRKTGKEIAAK-MNLKE---------KLTKSYHLIKTHK----------DGPSIKIRPIASNTNGPTTKASWLLSKILKPLLNSVPYHLQSSDCLMARLNKSGKATHNEFNYTFSLDVVALYTSIDPCEAIEC 493 Y SDK G F V+ ++ + + +N Y+K S + + + +R T + I K MN K + Y L+KTHK +K RPI S+ GP+ + SW L+K+L PLL +V H+ + + ++ LN +N + S D V+LYT+I+ EAIE Sbjct: 120 YSVSDKSGDFVVLTQAMDKKLVKQDLSDTNTYEKSSKTAFDKVSNNLRSTARRILGKIMNAKTIKRFIVTFPAVPTYYALVKTHKIPEDVDLQKLTEKEMKTRPIISSCGGPSDRVSWFLTKLLSPLLRNVAAHVINVEEFISALNHCDLPDNNCYA---SFDAVSLYTNINNDEAIEA 295
BLAST of Trafficking protein particle complex subunit 6b vs. Planmine SMEST
Match: SMESG000065056.1 (SMESG000065056.1) HSP 1 Score: 88.9669 bits (219), Expect = 3.486e-21 Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2 Query: 749 QFLILPCGIIQGALANLGIISQVTAEVQNIPHCKFTFKLCNP 874 +FLILPCGIIQGALANLGIISQVTAEVQNIPHCKFTFKLCNP Sbjct: 121 KFLILPCGIIQGALANLGIISQVTAEVQNIPHCKFTFKLCNP 162 The following BLAST results are available for this feature:
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Trafficking protein particle complex subunit 6b vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Trafficking protein particle complex subunit 6b vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014486 ID=SMED30014486|Name=Trafficking protein particle complex subunit 6b|organism=Schmidtea mediterranea sexual|type=transcript|length=1006bpback to top protein sequence of SMED30014486-orf-1 >SMED30014486-orf-1 ID=SMED30014486-orf-1|Name=SMED30014486-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp MSPNTIETKIRKTGKEIAAKMNLKEKLTKSYHLIKTHKDGPSIKIRPIASback to top Annotated Terms
The following terms have been associated with this transcript:
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