RNA binding protein MEX3B

Overview
NameRNA binding protein MEX3B
Smed IDSMED30014382
Length (bp)2766
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA binding protein MEX3B (SMED30014382) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding protein MEX3B (SMED30014382) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding protein MEX3B (SMED30014382) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA binding protein MEX3B (SMED30014382) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30014382

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30014382SMESG000062702.1 dd_Smed_v4_7864_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30014382SMESG000062702.1 dd_Smed_v4_7864_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3B (mex-3 RNA binding family member B [Source:HGNC Symbol;Acc:HGNC:25297])

HSP 1 Score: 57.7658 bits (138), Expect = 8.049e-8
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 2 
Query:  872 DSSSKKTYLQL--GVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            DS  +K  + +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M+R +
Sbjct:   56 DSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV--------------TGRKEDVAMARRE 126
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 56.9954 bits (136), Expect = 1.305e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRKEDVEMAKRE 239
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 56.6102 bits (135), Expect = 1.434e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:    7 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRKEDVEMAKRE 63
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040])

HSP 1 Score: 55.8398 bits (133), Expect = 3.036e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +F++                R ED+ M++ +
Sbjct:   66 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV--------------TGRKEDVAMAKRE 122
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Match: MEX3C (mex-3 RNA binding family member C [Source:HGNC Symbol;Acc:HGNC:28040])

HSP 1 Score: 55.8398 bits (133), Expect = 3.199e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +F++                R ED+ M++ +
Sbjct:  236 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV--------------TGRKEDVAMAKRE 292
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 55.4546 bits (132), Expect = 1.189e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   ED +F++
Sbjct:   51 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVV 94
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Match: mex-3 (Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3])

HSP 1 Score: 55.4546 bits (132), Expect = 1.207e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   ED +F++
Sbjct:   82 VEVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVV 125
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310539)

HSP 1 Score: 57.7658 bits (138), Expect = 4.504e-8
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:  815 IQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            I + P+ ++          D S K   +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   96 IPSAPNCLLLPNAGAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 170
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310540)

HSP 1 Score: 57.7658 bits (138), Expect = 4.504e-8
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:  815 IQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            I + P+ ++          D S K   +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   96 IPSAPNCLLLPNAGAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 170
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0310541)

HSP 1 Score: 57.7658 bits (138), Expect = 4.504e-8
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:  815 IQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            I + P+ ++          D S K   +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   96 IPSAPNCLLLPNAGAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 170
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Match: CG11360 (gene:FBgn0039920 transcript:FBtr0089091)

HSP 1 Score: 57.7658 bits (138), Expect = 4.504e-8
Identity = 30/75 (40.00%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:  815 IQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFII 1039
            I + P+ ++          D S K   +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++
Sbjct:   96 IPSAPNCLLLPNAGAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV 170
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: mex3b (mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628])

HSP 1 Score: 57.7658 bits (138), Expect = 5.499e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M+R +
Sbjct:   62 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTG--------------RREDVAMARRE 118
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Match: FO082781.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:100332760])

HSP 1 Score: 56.225 bits (134), Expect = 1.445e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF+I                R ED+ ++R +
Sbjct:  122 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLI--------------TGRKEDVALARRE 178
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: MEX3B (mex-3 RNA binding family member B [Source:NCBI gene;Acc:100490923])

HSP 1 Score: 57.7658 bits (138), Expect = 6.935e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M+R +
Sbjct:   63 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV--------------TGRKEDVAMARRE 119
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 57.3806 bits (137), Expect = 1.041e-7
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 2 
Query:  905 GVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            GV VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +FI+                R ED+ M++ +
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIV--------------TGRKEDVEMAKRE 296
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: mex3d (mex-3 RNA binding family member D [Source:NCBI gene;Acc:100144717])

HSP 1 Score: 57.3806 bits (137), Expect = 1.090e-7
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 2 
Query:  905 GVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            GV VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +FI+                R ED+ M++ +
Sbjct:  239 GVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPIRGEEPIFIV--------------TGRKEDVEMAKRE 296
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Match: atp6ap2 (ATPase, H+ transporting, lysosomal accessory protein 2 [Source:Xenbase;Acc:XB-GENE-964301])

HSP 1 Score: 56.6102 bits (135), Expect = 1.553e-7
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M++ +
Sbjct:   80 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV--------------TGRKEDVAMAKRE 136
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3b (mex3 RNA binding family member B [Source:MGI Symbol;Acc:MGI:1918252])

HSP 1 Score: 57.7658 bits (138), Expect = 5.967e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M+R +
Sbjct:   77 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV--------------TGRKEDVAMARRE 133
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3d (mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847])

HSP 1 Score: 57.7658 bits (138), Expect = 6.681e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  238 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRKEDVEMAKRE 294
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3c (mex3 RNA binding family member C [Source:MGI Symbol;Acc:MGI:2652843])

HSP 1 Score: 55.8398 bits (133), Expect = 2.040e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +F++                R ED+ M++ +
Sbjct:  229 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV--------------TGRKEDVAMAKRE 285
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Match: Mex3a (mex3 RNA binding family member A [Source:MGI Symbol;Acc:MGI:1919890])

HSP 1 Score: 53.9138 bits (128), Expect = 8.023e-7
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIV 1261
            V VP+ EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+  +R +         +   +R  N+S AA G+  A    V    R++VP  +V
Sbjct:  136 VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMV--------------TGRREDVATARREIISAAEHFSMIRASR--NKSGAAFGVAPALPGQVTI--RVRVPYRVV 235
[Close]
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q6ZN04|MEX3B_HUMAN (RNA-binding protein MEX3B OS=Homo sapiens OX=9606 GN=MEX3B PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.865e-7
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 2 
Query:  872 DSSSKKTYLQL--GVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            DS  +K  + +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ M+R +
Sbjct:   56 DSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVV--------------TGRKEDVAMARRE 126
[Close]
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|A1L3F4|MEX3B_XENLA (RNA-binding protein MEX3B OS=Xenopus laevis OX=8355 GN=mex3b PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.404e-7
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V+VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++                R ED+ ++R +
Sbjct:   63 VQVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTG--------------RKEDVALARRE 119
[Close]
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q86XN8|MEX3D_HUMAN (RNA-binding protein MEX3D OS=Homo sapiens OX=9606 GN=MEX3D PE=1 SV=3)

HSP 1 Score: 56.9954 bits (136), Expect = 6.268e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  183 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRKEDVEMAKRE 239
[Close]
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q3UE17|MEX3D_MOUSE (RNA-binding protein MEX3D OS=Mus musculus OX=10090 GN=Mex3d PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 6.901e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  164 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRKEDVEMAKRE 220
[Close]
BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Match: sp|Q05A36|MEX3C_MOUSE (RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus OX=10090 GN=Mex3c PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 1.427e-6
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ +F++                R ED+ M++ +
Sbjct:  229 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVV--------------TGRKEDVAMAKRE 285
[Close]
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3UGA8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6241 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 6.478e-61
Identity = 165/391 (42.20%), Postives = 216/391 (55.24%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRR----SSCP--------------ITNNNRPSNRSP---------------------------------AASGITQAGS--KVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            AQK G+IVG ELE +K  S RS   +T  RI   F++RYG++++ +K +Y+QLGVRVPSK+HVSEIVGK G KIK IRE+TGALITTPGE EDHVFIIEAPP  ALHVA+++  RA++IT S+   S RR    SS P                +N R  NRSP                                  +SG    GS  +++LA  +I VP+ +VG+IIGTQGSIITTIQ+DTGTEI+SPPKE  +  ++ ++FEI  YQ+  +T    A+ RV  AKQLI H+ M Q E+  +EE           +    G       N  G     N    SR+S   G              W+W DV +++   A+EV++RIL ES
Sbjct:  222 AQKRGYIVGAELERIKENSRRST-SHTYGRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERRRGSTSSIPGCMALFSMNSINGSAPSNGRLMNRSPDDLPTGSLPSPAPLLKTNVNSGSDAATFAFSNGLSSGNNVGGSSGRILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-----------LDEGGGCSGKPRANSTGDDCDENGSASSRNSKTVG--------------WMWPDVAQMDSTEAREVLDRILAES 586
[Close]
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A0R3SVM1 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS9634 PE=4 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.515e-57
Identity = 163/398 (40.95%), Postives = 223/398 (56.03%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSR-NQESRRRSS------C-------------------------------------------PITNNNRPSNR----SPAASGITQAGS------KVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            A+  GFIVG ELE++K  S RS   +T  RI   F++RYG++++ +K +YLQLGVRVP+K+HVSEIVGK G KIK IRE+TGALITTPGE EDHVFIIEAPP  AL VA+++ NRA +IT S+ N   RRR S      C                                           P+TN    SN     S   +G++  GS      + +LA  +I VP+ +VG+IIGTQGSIITTIQ+DTGTEI+SPPKE  +  ++ ++FEI  YQ+  +T + +A+ RV  AKQLI H+ M Q E+  +EE   +N        T NG  +   +N  G+   + D N    +        +         W+W DV++++   AQ+V++RIL ES
Sbjct:  182 ARSKGFIVGQELEHIKENSRRST-SHTYGRISVYFRNRYGETEAKTKASYLQLGVRVPTKDHVSEIVGKGGQKIKLIREETGALITTPGENEDHVFIIEAPPEIALKVAELIANRALEITQSKANASERRRGSTNSIPGCASLFNGNGITSATTINGGQRLISRSPDDLPNATIPSPSPLLKSPLTNGGNYSNENGFFSSNGNGLSNGGSNNSGTTRTLLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSQGMT-VQDAEARVQQAKQLIGHLVMRQFERRYSEELDDNN--------TGNGSSAKSRNNSNGE---DFDGNSGGKTTTNNTTSGV--------AWMWPDVQQMDAKEAQDVLDRILAES 558
[Close]
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: U6J6B3 (RNA-binding protein MEX3B OS=Echinococcus granulosus OX=6210 GN=EGR_08517 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.896e-38
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRR 1135
            AQK G+IVG ELE +K  S RS   +T  RI   F++RYG++++ +K +Y+QLGVRVPSK+HVSEIVGK G KIK IRE+TGALITTPGE EDHVFIIEAPP  ALHVA+++  RA++IT S+   S RR
Sbjct:  210 AQKRGYIVGPELERIKENSRRST-SHTYGRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERR 338

HSP 2 Score: 91.2781 bits (225), Expect = 6.586e-15
Identity = 72/182 (39.56%), Postives = 105/182 (57.69%), Query Frame = 2 
Query: 1214 KVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            +++LA  +I VP+ +VG+IIGTQGSIITTIQ+DTGTEI+SPPKE  +  ++ ++FEI  YQ+  +T    A+ RV  AKQLI H+ M Q E+  +EE               +G   S     AGK   N+  +E+  S  +           K   W+W DV +++ + A+EV++RIL ES
Sbjct:  445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------------LEDGPAGSSN---AGKSRSNSAGDEAEESKTS-----------KTVAWMWPDVAQMDSDEAREVLDRILAES 599
[Close]
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A068XYZ9 (RNA binding protein MEX3B OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000495700 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.138e-38
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRR 1135
            AQK G+IVG ELE +K  S RS   +T  RI   F++RYG++++ +K +Y+QLGVRVPSK+HVSEIVGK G KIK IRE+TGALITTPGE EDHVFIIEAPP  ALHVA+++  RA++IT S+   S RR
Sbjct:  210 AQKRGYIVGPELERIKENSRRST-SHTYGRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERR 338

HSP 2 Score: 91.2781 bits (225), Expect = 7.277e-15
Identity = 72/182 (39.56%), Postives = 105/182 (57.69%), Query Frame = 2 
Query: 1214 KVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            +++LA  +I VP+ +VG+IIGTQGSIITTIQ+DTGTEI+SPPKE  +  ++ ++FEI  YQ+  +T    A+ RV  AKQLI H+ M Q E+  +EE               +G   S     AGK   N+  +E+  S  +           K   W+W DV +++ + A+EV++RIL ES
Sbjct:  445 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEE-------------LEDGPAGSSN---AGKSRSNSAGDEAEESKTS-----------KTVAWMWPDVAQMDSDEAREVLDRILAES 599
[Close]
BLAST of RNA binding protein MEX3B vs. TrEMBL
Match: A0A158R706 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1243 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.469e-38
Identity = 81/130 (62.31%), Postives = 101/130 (77.69%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRR 1135
            AQK G+IVG ELE +K  S RS   +T  RI   F++RYG++++ +K +Y+QLGVRVPSK+HVSEIVGK G KIK IRE+TGALITTPGE EDHVFIIEAPP  ALHVA+++  RA++IT S+   S RR
Sbjct:  210 AQKRGYIVGPELERIKENSRRST-SHTYGRISAHFRNRYGETEAKTKASYMQLGVRVPSKDHVSEIVGKGGQKIKLIREETGALITTPGEYEDHVFIIEAPPEIALHVAELISTRAQEITQSKMSASERR 338

HSP 2 Score: 93.9745 bits (232), Expect = 1.008e-15
Identity = 72/182 (39.56%), Postives = 105/182 (57.69%), Query Frame = 2 
Query: 1214 KVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            +++LA  +I VP+ +VG+IIGTQGSIITTIQ+DTGTEI+SPPKE  +  ++ ++FEI  YQ+  +T    A+ RV  AKQLI H+ M Q E+  +EE                 +  S   N AGK   N+  +E+  S  +           K   W+W DV +++ + A+EV++RIL ES
Sbjct:  444 RILLARSKISVPQDMVGKIIGTQGSIITTIQKDTGTEIKSPPKEAARGPSATSEFEISAYQSLGMTSNQAAECRVQQAKQLIGHLVMRQFERRASEEL----------------EDGSAGGNNAGKTRSNSAGDEAEESRAS-----------KAVVWMWPDVAQMDSDEAREVLDRILAES 598
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: mex3b (mex-3 RNA binding family member B [Source:NCBI gene;Acc:103046405])

HSP 1 Score: 59.3066 bits (142), Expect = 1.514e-8
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 2 
Query:  854 DRYGQSDSSSKKTYLQL--GVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITM---SRNQESRRRSSCPI 1150
            D  G  D+  +K  + +   V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF++           + + + AE  +M   SRN+ S    S P+
Sbjct:   42 DESGAYDNEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAEHFSMIRASRNKNSSLNGSTPV 145
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: ENSAMXT00000025356.2 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000037.1:51923:60658:1 gene:ENSAMXG00000024633.2 transcript:ENSAMXT00000025356.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 56.6102 bits (135), Expect = 9.588e-8
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF+I                R ED+ ++R +
Sbjct:  113 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLI--------------TGRKEDVALARRE 169
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Match: MEX3D (mex-3 RNA binding family member D [Source:HGNC Symbol;Acc:HGNC:16734])

HSP 1 Score: 55.4546 bits (132), Expect = 1.924e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:   45 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRREDVEMAKRE 101
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Match: EDO32414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV60])

HSP 1 Score: 57.3806 bits (137), Expect = 3.197e-9
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   ED VF++                R ED+T+++ +
Sbjct:   10 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEDPVFVVTG--------------RKEDVTLAKRE 66
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000028704.1 (mex-3 RNA binding family member A [Source:NCBI gene;Acc:111948930])

HSP 1 Score: 56.225 bits (134), Expect = 1.225e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VF+I                R ED+ ++R +
Sbjct:  176 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFLI--------------TGRKEDVALARRE 232
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: ENSORLT00000006291.2 (RNA-binding protein MEX3B [Source:NCBI gene;Acc:101170521])

HSP 1 Score: 55.4546 bits (132), Expect = 2.570e-7
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E  VF++                R ED+ M++ +
Sbjct:  199 VAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVV--------------TGRKEDVAMAKRE 255
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 55.0694 bits (131), Expect = 2.803e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRREDVEMAKRE 208
[Close]
BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Match: MEX3D (mex-3 RNA binding family member D [Source:NCBI gene;Acc:101171527])

HSP 1 Score: 55.0694 bits (131), Expect = 2.864e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  908 VRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQ 1120
            V VPS EHV+EIVG+QG KIK +R KT   I TP   E+ VFI+                R ED+ M++ +
Sbjct:  152 VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV--------------TGRREDVEMAKRE 208
[Close]
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 1501.49 bits (3886), Expect = 0.000e+0
Identity = 782/784 (99.74%), Postives = 784/784 (100.00%), Query Frame = 2 
Query:  224 MPIDEESCFYFEKDSTMPSQMSGINTTNRYSINNLSKFTKIENNSISDLTHIYQPSETSQIKTDXXXXXXXXXXXXXEQGMSDLCNLSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESXXXXXXRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQXXXXXXXXXXXXXXXXXXGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT 2575
            MPIDEESCFYFEKDSTMPSQMSGINTTNRYSINNLSKFTKI+NNSISDLTHIYQPSETSQIKTDSILMNNNISLSIIEQGMSDLC+LSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQYSVSNPNNISNNNYSIVNGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT
Sbjct:    1 MPIDEESCFYFEKDSTMPSQMSGINTTNRYSINNLSKFTKIDNNSISDLTHIYQPSETSQIKTDSILMNNNISLSIIEQGMSDLCHLSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQYSVSNPNNISNNNYSIVNGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT 784
[Close]
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000062702.1 (SMESG000062702.1)

HSP 1 Score: 1466.83 bits (3796), Expect = 0.000e+0
Identity = 766/768 (99.74%), Postives = 768/768 (100.00%), Query Frame = 2 
Query:  272 MPSQMSGINTTNRYSINNLSKFTKIENNSISDLTHIYQPSETSQIKTDXXXXXXXXXXXXXEQGMSDLCNLSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESXXXXXXRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQXXXXXXXXXXXXXXXXXXGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT 2575
            MPSQMSGINTTNRYSINNLSKFTKI+NNSISDLTHIYQPSETSQIKTDSILMNNNISLSIIEQGMSDLC+LSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQYSVSNPNNISNNNYSIVNGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT
Sbjct:    1 MPSQMSGINTTNRYSINNLSKFTKIDNNSISDLTHIYQPSETSQIKTDSILMNNNISLSIIEQGMSDLCHLSTPINSANGGVLDDYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSDPTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRIIGTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPTIETIRPRHSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFINRRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQKLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSGTTTQQVQSNATYFPFDNSHWSYNPAGFQYSVSNPNNISNNNYSIVNGSIKSYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT 768
[Close]
BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 313.153 bits (801), Expect = 2.338e-95
Identity = 209/409 (51.10%), Postives = 272/409 (66.50%), Query Frame = 2 
Query:  650 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPK--NSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESXXXXXXRSEPSIYDDNTKGLFTLDETESFP 1849
            G+N+ F +  S   W    VD + K  DF       EAQ  GFIVG ELENVKAKS RS++Q   + I   F+  YG+ ++  ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P  AL VA+++K+RA +IT++R +E+ ++ S  +  +NR     P  A S +     + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+   P   N  A FEILVYQ  N  D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S         SS E NL       +D N      +  +++KLL  QM+   W+W+D+++LED +A EVV RILEESKKK+K  S+  IYD +   + ++D  E  P
Sbjct:   16 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKS--------ISSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPS--AMSSIDRYEELP 395
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BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000071674.1 (SMESG000071674.1)

HSP 1 Score: 313.153 bits (801), Expect = 2.721e-95
Identity = 209/409 (51.10%), Postives = 272/409 (66.50%), Query Frame = 2 
Query:  650 GINRGFSDPTSQTQWSHDLVD-ENKVRDFC----ALEAQKIGFIVGDELENVKAKSHRSVIQNTPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSP--AASGITQAGSKVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPK--NSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEESXXXXXXRSEPSIYDDNTKGLFTLDETESFP 1849
            G+N+ F +  S   W    VD + K  DF       EAQ  GFIVG ELENVKAKS RS++Q   + I   F+  YG+ ++  ++ Y Q+GVRVP+KEHVSEIVGKQG KIK+IREKTGALI TPGE EDHVFIIEA P  AL VA+++K+RA +IT++R +E+ ++ S  +  +NR     P  A S +     + +LA+G I+VPK IVGRIIGT GSIITTIQ+DTGTEIRSPPK+   P   N  A FEILVYQ  N  D+ EA QR+ NAKQLIAHVAMHQ+E+IRAEE+P+SNY+++S         SS E NL       +D N      +  +++KLL  QM+   W+W+D+++LED +A EVV RILEESKKK+K  S+  IYD +   + ++D  E  P
Sbjct:   21 GLNQKFLEIKSI--WQEVNVDYDKKSVDFTYSDYIQEAQTDGFIVGLELENVKAKSRRSLMQQMSNHISINFQSLYGKENNGVRQNYFQIGVRVPTKEHVSEIVGKQGLKIKEIREKTGALIITPGESEDHVFIIEALPGIALTVARLIKDRANEITINRQRENNQKVSLLMNISNRFGTVKPYNAISSL-----RPILATGIIEVPKNIVGRIIGTHGSIITTIQKDTGTEIRSPPKD-NNPSHNNCKAKFEILVYQRNNTIDVQEAVQRIKNAKQLIAHVAMHQMERIRAEESPFSNYRLKS--------ISSWEKNLPA-----SDGN------VFADKEKLLNYQMQSISWLWTDIDRLEDQMADEVVLRILEESKKKSKLHSDYKIYDPS--AMSSIDRYEELP 400
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BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Match: SMESG000025422.1 (SMESG000025422.1)

HSP 1 Score: 184.882 bits (468), Expect = 3.217e-48
Identity = 139/340 (40.88%), Postives = 190/340 (55.88%), Query Frame = 2 
Query:  746 AQKIGFIVGDELENVKAKSHRSVIQNT-PDRIINTFKDRYGQSDSS-SKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQIREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQESRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVXXXXXXXXXXXXXXXXDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHEAKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDEDNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNLAQEVVNRILEES 1759
            A K+GF+VG +L+ V  +S  + ++N+   RI N FK ++G S S  ++K YL LGVRVPSKEHVSEIVGK+G KIK IR+ TGALI TP E+EDHVF+IEA P TA+ V QI++  A+ IT  RN    +  +       RP  RSP        G++  LA+  I VP+ +VG++IGTQGSIITT+Q++TGTEI+SPPK+  +     ADFEI VY+   +     A  ++  AKQLIAH+ M   ++      P                 SSDE N                                P EWIW +V +++D  A+E+++RIL  S
Sbjct:  195 ASKMGFLVGQDLDEVLNRS--ATMKNSNSSRISNFFKHKHGSSGSHLTQKQYLVLGVRVPSKEHVSEIVGKEGKKIKTIRQTTGALIATPNEKEDHVFLIEAVPETAIKVGQIIQQLADQIT--RN----KLGNIAGLMGERP--RSPP-----MLGNRTPLATATIGVPQRLVGKVIGTQGSIITTVQKETGTEIKSPPKDELRAPGDTADFEISVYENGTVNSEETAWLQIHRAKQLIAHLVMRVWDQQPRNSTP-----------------SSDEGNCTPNTC-------------------------SP-EWIWPEVSRMDDGDAKEIIDRILRSS 476
The following BLAST results are available for this feature:
BLAST of RNA binding protein MEX3B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
MEX3B8.049e-838.82mex-3 RNA binding family member B [Source:HGNC Sym... [more]
MEX3D1.305e-742.25mex-3 RNA binding family member D [Source:HGNC Sym... [more]
MEX3D1.434e-742.25mex-3 RNA binding family member D [Source:HGNC Sym... [more]
MEX3C3.036e-739.44mex-3 RNA binding family member C [Source:HGNC Sym... [more]
MEX3C3.199e-739.44mex-3 RNA binding family member C [Source:HGNC Sym... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mex-31.189e-754.55Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3... [more]
mex-31.207e-754.55Muscle EXcess [Source:UniProtKB/TrEMBL;Acc:V6CKQ3... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
CG113604.504e-840.00gene:FBgn0039920 transcript:FBtr0310539[more]
CG113604.504e-840.00gene:FBgn0039920 transcript:FBtr0310540[more]
CG113604.504e-840.00gene:FBgn0039920 transcript:FBtr0310541[more]
CG113604.504e-840.00gene:FBgn0039920 transcript:FBtr0089091[more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mex3b5.499e-842.25mex-3 RNA binding family member B [Source:ZFIN;Acc... [more]
FO082781.11.445e-742.25mex-3 RNA binding family member A [Source:NCBI gen... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
MEX3B6.935e-842.25mex-3 RNA binding family member B [Source:NCBI gen... [more]
mex3d1.041e-741.67mex-3 RNA binding family member D [Source:NCBI gen... [more]
mex3d1.090e-741.67mex-3 RNA binding family member D [Source:NCBI gen... [more]
atp6ap21.553e-740.85ATPase, H+ transporting, lysosomal accessory prote... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Mex3b5.967e-842.25mex3 RNA binding family member B [Source:MGI Symbo... [more]
Mex3d6.681e-842.25mex3 RNA binding family member D [Source:MGI Symbo... [more]
Mex3c2.040e-739.44mex3 RNA binding family member C [Source:MGI Symbo... [more]
Mex3a8.023e-733.90mex3 RNA binding family member A [Source:MGI Symbo... [more]
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BLAST of RNA binding protein MEX3B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q6ZN04|MEX3B_HUMAN3.865e-738.82RNA-binding protein MEX3B OS=Homo sapiens OX=9606 ... [more]
sp|A1L3F4|MEX3B_XENLA4.404e-740.85RNA-binding protein MEX3B OS=Xenopus laevis OX=835... [more]
sp|Q86XN8|MEX3D_HUMAN6.268e-742.25RNA-binding protein MEX3D OS=Homo sapiens OX=9606 ... [more]
sp|Q3UE17|MEX3D_MOUSE6.901e-742.25RNA-binding protein MEX3D OS=Mus musculus OX=10090... [more]
sp|Q05A36|MEX3C_MOUSE1.427e-639.44RNA-binding E3 ubiquitin-protein ligase MEX3C OS=M... [more]
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BLAST of RNA binding protein MEX3B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3UGA86.478e-6142.20Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A0R3SVM11.515e-5740.95Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
U6J6B31.896e-3862.31RNA-binding protein MEX3B OS=Echinococcus granulos... [more]
A0A068XYZ92.138e-3862.31RNA binding protein MEX3B OS=Echinococcus multiloc... [more]
A0A158R7062.469e-3862.31Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
mex3b1.514e-836.54mex-3 RNA binding family member B [Source:NCBI gen... [more]
ENSAMXT00000025356.29.588e-842.25pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
MEX3D1.924e-742.25mex-3 RNA binding family member D [Source:HGNC Sym... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA binding protein MEX3B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA binding protein MEX3B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO324143.197e-942.25Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA binding protein MEX3B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ENSORLT00000028704.11.225e-742.25mex-3 RNA binding family member A [Source:NCBI gen... [more]
ENSORLT00000006291.22.570e-740.85RNA-binding protein MEX3B [Source:NCBI gene;Acc:10... [more]
MEX3D2.803e-742.25mex-3 RNA binding family member D [Source:NCBI gen... [more]
MEX3D2.864e-742.25mex-3 RNA binding family member D [Source:NCBI gen... [more]
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BLAST of RNA binding protein MEX3B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000062702.10.000e+099.74SMESG000062702.1[more]
SMESG000062702.10.000e+099.74SMESG000062702.1[more]
SMESG000071674.12.338e-9551.10SMESG000071674.1[more]
SMESG000071674.12.721e-9551.10SMESG000071674.1[more]
SMESG000025422.13.217e-4840.88SMESG000025422.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014382 ID=SMED30014382|Name=RNA binding protein MEX3B|organism=Schmidtea mediterranea sexual|type=transcript|length=2766bp
CAAGGATTTTGATTGGTCGGATATCAAACCAATCACAATCAGTAATATTC
ACGTCAATACTTGAATCATTATTTTGGCAATAAAATTATTCTCATGATTT
GAAAGTGTTGGATTGGGGTTTTAATTTCATACACTTTGTTTTGTGATTAT
CATTTTTAATTATAAAAAAAATTATCGTGAGTGACAAACAAAAGAAAAAA
TATATTTTTCTCTTTGAAATCATATGCCAATTGACGAAGAGAGTTGTTTT
TATTTTGAAAAGGACTCAACAATGCCATCACAGATGTCGGGAATCAACAC
AACAAATCGATATTCAATTAACAACTTAAGCAAATTCACAAAAATTGAAA
ATAACAGTATTTCTGATTTGACTCATATCTATCAACCCTCCGAGACTTCA
CAGATTAAAACAGATTCTATTTTGATGAATAACAACATTTCTTTAAGTAT
CATTGAACAAGGAATGAGTGATTTGTGCAACCTTTCGACACCAATAAACA
GTGCAAATGGGGGAGTTCTTGATGATTATCGAATGCGATTATCGGCAGAA
GAAGTCCGTGGAATTTGCCAACCTAGAGGACAGCCGTTTTTTCGACGAGC
TAGCAATGGAAGTAGTGACACACTAACGAGTTCTGATATGACTTATATCG
GTATTAATAGAGGATTTTCTGATCCAACTTCACAAACTCAATGGAGTCAT
GATTTAGTTGACGAAAATAAAGTTCGTGATTTTTGTGCATTAGAAGCACA
GAAAATTGGATTTATTGTTGGAGATGAATTGGAAAATGTAAAAGCTAAAT
CTCATCGGTCAGTTATTCAGAATACTCCAGATAGGATAATCAACACTTTT
AAAGATCGATATGGACAATCTGATTCGAGCAGCAAGAAAACTTATTTACA
ATTGGGGGTAAGAGTACCATCAAAGGAACATGTTTCAGAAATCGTAGGAA
AACAAGGGTCAAAAATTAAACAAATTCGTGAAAAAACCGGTGCATTAATC
ACAACTCCTGGTGAACAAGAAGATCACGTTTTCATCATTGAAGCTCCGCC
TAGAACTGCTTTGCATGTGGCTCAAATTCTAAAAAACCGTGCCGAAGACA
TCACGATGAGTAGAAACCAAGAAAGTCGTAGACGAAGTTCATGCCCTATC
ACTAATAACAACCGACCTTCAAACCGAAGCCCAGCAGCAAGCGGAATTAC
TCAGGCTGGTTCCAAAGTGGTTCTTGCTTCCGGTAGAATTCAGGTGCCAA
AAATAATTGTCGGAAGAATCATTGGCACACAAGGCTCTATTATAACTACG
ATTCAAAGAGATACCGGAACGGAAATTCGAAGTCCTCCAAAAGAAATTGG
TAAACCGAAAAACTCAATGGCCGATTTCGAAATCTTAGTTTATCAAACTA
CAAATTTAACCGATCTTCATGAAGCCAAGCAGCGAGTTTTGAATGCAAAA
CAACTGATTGCTCATGTTGCTATGCATCAGCTTGAAAAGATCCGTGCTGA
AGAAGCGCCTTATTCAAATTATCAAGTCCAGTCACACGTGTCCACATCCA
ATGGAGATCAGAGTAGTGACGAGGATAATTTAGCCGGTAAAATGGCAATG
AATAATGACCATAATGAATCGAGGCATTCGTTAATAACTGGAAATCGCGA
CAAACTTTTGTTGGATCAAATGAAACCACACGAATGGATCTGGAGTGATG
TAGAGAAATTGGAAGATAATTTAGCTCAAGAGGTCGTAAACAGAATTTTA
GAGGAATCGAAAAAGAAGACGAAGACAAGATCTGAGCCAAGCATATATGA
TGACAATACCAAAGGTCTATTCACACTGGATGAAACCGAATCATTTCCAA
CTATTGAAACGATTCGTCCAAGACACTCTCTTCCAGAAACTCGAGGCAGT
ACTCACGTAGAGTCATTCTATAGATCAGATCCTCAAACGTCACTTCCGTA
TTCCAATGACAACTATCTGGTTACCGATTCAGATTCAGATTTCCACAGTT
CTCCGAATATATCATTCATAAACCGGCGGGATTTAAATTCTCGTCAAGAA
TCCTGCGAGCATGATATGTTGGAATTCAAATCACAAGATTTTGTAGATAA
TTATTCTTATAATGGCAGCGATTTTATTAATGGATTTTATCAAATGTCTA
AATCTCGAGAAATCTCCGATCAGAAATTGATGCAGCAACTATTCGTCGGT
GGATCAGAAATCGGAGGAAACCTGAATCCACAACTGGTAAGAGAGCCATC
AAATCATTTTTATAACCGATACATAATGGAGCAAAATTTTCTTAACGGAA
ACTATAGCAAATCTGATTCTGGAACGACAACTCAACAGGTCCAGTCGAAT
GCCACCTATTTTCCTTTTGACAATAGCCATTGGAGTTATAATCCAGCGGG
ATTTCAATACTCAGTTTCCAACCCTAACAATATCAGCAACAATAACTACA
GCATAGTTAATGGATCCATCAAGTCATACGCTGATAGTGTCAAACCGCTA
ATGAATGATTTCAGCACCAATCATGGCACTATTGGTGATCATTTGAAAAA
AAGTCCTTCAAATCACTTTAAGACATAAATAAAAATATAATTTTATTTTT
CAAAAAAATATGTTACACAAAAATAATAATTTATAAGATTATCTATTTGA
ATATGATCAAATAGTTTATTATTGATGTTAACTCTGATATTTAAAAAATT
TATATATCGAATATTTATTTATATTTATTTAATTATTATTATTTATTAAT
ATTAATTGTGTGATTG
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protein sequence of SMED30014382-orf-1

>SMED30014382-orf-1 ID=SMED30014382-orf-1|Name=SMED30014382-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=785bp
MPIDEESCFYFEKDSTMPSQMSGINTTNRYSINNLSKFTKIENNSISDLT
HIYQPSETSQIKTDSILMNNNISLSIIEQGMSDLCNLSTPINSANGGVLD
DYRMRLSAEEVRGICQPRGQPFFRRASNGSSDTLTSSDMTYIGINRGFSD
PTSQTQWSHDLVDENKVRDFCALEAQKIGFIVGDELENVKAKSHRSVIQN
TPDRIINTFKDRYGQSDSSSKKTYLQLGVRVPSKEHVSEIVGKQGSKIKQ
IREKTGALITTPGEQEDHVFIIEAPPRTALHVAQILKNRAEDITMSRNQE
SRRRSSCPITNNNRPSNRSPAASGITQAGSKVVLASGRIQVPKIIVGRII
GTQGSIITTIQRDTGTEIRSPPKEIGKPKNSMADFEILVYQTTNLTDLHE
AKQRVLNAKQLIAHVAMHQLEKIRAEEAPYSNYQVQSHVSTSNGDQSSDE
DNLAGKMAMNNDHNESRHSLITGNRDKLLLDQMKPHEWIWSDVEKLEDNL
AQEVVNRILEESKKKTKTRSEPSIYDDNTKGLFTLDETESFPTIETIRPR
HSLPETRGSTHVESFYRSDPQTSLPYSNDNYLVTDSDSDFHSSPNISFIN
RRDLNSRQESCEHDMLEFKSQDFVDNYSYNGSDFINGFYQMSKSREISDQ
KLMQQLFVGGSEIGGNLNPQLVREPSNHFYNRYIMEQNFLNGNYSKSDSG
TTTQQVQSNATYFPFDNSHWSYNPAGFQYSVSNPNNISNNNYSIVNGSIK
SYADSVKPLMNDFSTNHGTIGDHLKKSPSNHFKT*
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Aliases
The feature 'RNA binding protein MEX3B' has the following synonyms
Synonym
mex3-2
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000101muscle cell
PLANA:0003001lateral region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 333..410
e-value: 0.016
score: 24.3
coord: 223..291
e-value: 5.1E-8
score: 42.6
IPR036612K Homology domain, type 1 superfamilyGENE3DG3DSA:3.30.1370.10coord: 325..421
e-value: 7.8E-9
score: 37.0
IPR036612K Homology domain, type 1 superfamilyGENE3DG3DSA:3.30.1370.10coord: 226..288
e-value: 9.0E-9
score: 37.1
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 338..407
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 232..295
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 229..283
e-value: 4.8E-8
score: 32.7
coord: 338..374
e-value: 3.9E-7
score: 29.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..326
NoneNo IPR availablePANTHERPTHR23285RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1coord: 226..373
NoneNo IPR availablePANTHERPTHR23285:SF17MEX-3 RNA BINDING FAMILY MEMBER Acoord: 226..373
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 334..405
score: 10.42
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 234..286
score: 10.127
NoneNo IPR availableCDDcd00105KH-Icoord: 229..272
e-value: 2.60747E-7
score: 46.3991
NoneNo IPR availableCDDcd00105KH-Icoord: 338..378
e-value: 2.88446E-6
score: 43.3175