SMED30014379
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014379 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Alignments
SMED30014379 aligns in the following genomic locations:
Homology
BLAST of SMED30014379 vs. Ensembl Xenopus
Match: slc35f6 (solute carrier family 35 member F6 [Source:Xenbase;Acc:XB-GENE-5913793]) HSP 1 Score: 47.3654 bits (111), Expect = 4.564e-7 Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = -2 Query: 88 PLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 303 PL +G P +G Q +P ++ Q +PL +G P +G Q P +G Q +PL +G P G Q + Sbjct: 118 PLQLGAQQPPFQLGSQQLPLHLSAQQLPLQLGAQQPPLQLGAQQPPLQLGAQQLPLQLGAQQPPLQQGSQQM 189 HSP 2 Score: 46.9802 bits (110), Expect = 5.855e-7 Identity = 23/74 (31.08%), Postives = 34/74 (45.95%), Query Frame = -2 Query: 88 NMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 309 +PL +G P +G Q P +G Q +PL + P +G Q P +G Q PL +G P +G Q + Sbjct: 62 QLPLQLGAQQPPLQLGAQQTPLQLGAQQLPLQLVAQQPPLQLGAQQPPLQLGAQQPPLQLGAQQPPFQLGSQQL 135 HSP 3 Score: 45.0542 bits (105), Expect = 2.958e-6 Identity = 25/74 (33.78%), Postives = 35/74 (47.30%), Query Frame = -2 Query: 91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312 Q +PL +G P +G Q P +G Q +PL +G P G Q + +G Q PL +G LP +G Q Sbjct: 142 QQLPLQLGAQQPPLQLGAQQPPLQLGAQQLPLQLGAQQPPLQQGSQQMLLQLGPQQPPLQLGTQQLPLQLGAQY 215
BLAST of SMED30014379 vs. TrEMBL
Match: A0A210PKB2 (Coagulation factor V OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT02772 PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 3.611e-11 Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 Q M ++MG + NMG Q V ++G Q + L++G + +MG Q V +MG Q M ++MGG + ++G Q V Sbjct: 49 QYMTIDMGSQYMTVNMGSQYVTVDIGSQCVTLDIGNQYVTVDMGSQRVTVDMGSQYMTVDMGGQYMTVDLGSQYV 123
BLAST of SMED30014379 vs. TrEMBL
Match: A0A433C6K8 (Uncharacterized protein (Fragment) OS=Curvibacter sp. OX=1888168 GN=EKK45_03700 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.435e-11 Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 2 Query: 89 TFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFS 301 T PP + G PP +G PP + GT PP++ G PP +G + PP + GT+ PP + G PP+ + Sbjct: 407 TNVPPAIAGTHVPPAIAGTHVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTYVPPMIA 477 HSP 2 Score: 65.855 bits (159), Expect = 2.693e-10 Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 2 Query: 101 PILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIF 310 P L G PP +G PP + GT PP + G PP+ +G + PP + GT+ PP + G PP +G + Sbjct: 402 PQLAGTNVPPAIAGTHVPPAIAGTHVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTY 471 HSP 3 Score: 56.225 bits (134), Expect = 7.143e-7 Identity = 20/55 (36.36%), Postives = 31/55 (56.36%), Query Frame = 2 Query: 89 TFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGT 253 T PP + G PP+ +G + PP + GT+ PP + G PP +G + PP++ T Sbjct: 425 THVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTYVPPMIAST 479
BLAST of SMED30014379 vs. TrEMBL
Match: A0A210QQR5 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT00772 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.899e-10 Identity = 24/75 (32.00%), Postives = 40/75 (53.33%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 N+ N GG N+ + GG N+ + G N+ + GG N+ + G N+ + GG N+ + GG N+ + GG N+ Sbjct: 231 SNIDRNDGGSNIDRDDGGSNIDRDDAGSNIDRDAGGSNIDRDDAGSNIDRDDGGSNIDRDDGGSNIDRDDGGSNI 305 HSP 2 Score: 62.003 bits (149), Expect = 5.206e-9 Identity = 24/75 (32.00%), Postives = 40/75 (53.33%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 N+ + GG N+ + GG N+ + GG N+ + G N+ N GG N+ + GG N+ + G N+ + GG N+ Sbjct: 195 SNIDRHDGGSNIDRDDGGSNIDRDAGGNNIDRDDGESNIDRNDGGSNIDRDDGGSNIDRDDAGSNIDRDAGGSNI 269
BLAST of SMED30014379 vs. TrEMBL
Match: S4AUM6 (Translation initiation factor IF-2 protein (Fragment) OS=Enterococcus casseliflavus 14-MB-W-14 OX=1259825 GN=D932_02532 PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 6.929e-10 Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QN P N G N P+N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 147 QNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 221 HSP 2 Score: 62.3882 bits (150), Expect = 2.546e-9 Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QN P N G N P+N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 156 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 230 HSP 3 Score: 62.3882 bits (150), Expect = 2.546e-9 Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QN P N G N P+N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 165 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 239 HSP 4 Score: 62.3882 bits (150), Expect = 2.546e-9 Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QN P N G N P+N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 174 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 248 HSP 5 Score: 58.5362 bits (140), Expect = 8.140e-8 Identity = 36/70 (51.43%), Postives = 39/70 (55.71%), Query Frame = -2 Query: 103 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNM 312 QN P N G N P+N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N Sbjct: 183 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQ 252 HSP 6 Score: 57.3806 bits (137), Expect = 1.638e-7 Identity = 36/70 (51.43%), Postives = 38/70 (54.29%), Query Frame = -2 Query: 88 NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 297 N G N P N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 143 NQGQQNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 212 HSP 7 Score: 52.7582 bits (125), Expect = 7.853e-6 Identity = 37/80 (46.25%), Postives = 40/80 (50.00%), Query Frame = -2 Query: 88 NMPLNMGGPNL------PHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 309 N P N G N +N G QN P N G QN P N G N P+N G QN P N G QN P N G N P+N G QN Sbjct: 124 NRPNNQGSHNRVNNQENRNNQGQQNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 203
BLAST of SMED30014379 vs. TrEMBL
Match: A0A242A5R0 (Translation initiation factor IF-2 OS=Enterococcus sp. 8G7_MSG3316 OX=1834191 GN=infB PE=3 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 2.219e-9 Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2 Query: 91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312 QN P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N G QN Sbjct: 166 QNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQN 239 HSP 2 Score: 63.1586 bits (152), Expect = 2.618e-9 Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2 Query: 91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312 QN P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N G QN Sbjct: 157 QNRPTNQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQN 230 HSP 3 Score: 62.7734 bits (151), Expect = 3.371e-9 Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2 Query: 91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312 QN P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N G QN Sbjct: 184 QNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPANQGQQN 257 HSP 4 Score: 62.7734 bits (151), Expect = 3.939e-9 Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2 Query: 91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312 QN P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N G QN Sbjct: 175 QNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQN 248 HSP 5 Score: 59.6918 bits (143), Expect = 4.993e-8 Identity = 37/71 (52.11%), Postives = 37/71 (52.11%), Query Frame = -2 Query: 91 PLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 303 P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N G QN Sbjct: 151 PTNQGQQNRPTNQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQN 221 HSP 6 Score: 58.9214 bits (141), Expect = 1.006e-7 Identity = 36/69 (52.17%), Postives = 36/69 (52.17%), Query Frame = -2 Query: 106 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHN 312 QN P N G N P N G QN P N G QN P N G N P N G QN P N G QN P N G N P N Sbjct: 193 QNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPANQGQQNRPAN 261
BLAST of SMED30014379 vs. Ensembl Nematostella
Match: EDO44181 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWK6]) HSP 1 Score: 48.9062 bits (115), Expect = 3.196e-8 Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = -3 Query: 48 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIW 296 IW+ Y +IW + + LIW + IW+ Y +IW + + LIW + IW+ + Y +IW + LIW + IW Sbjct: 98 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIWQQVRYFLIWQQVRYFLIWQQERYFLIW 180 HSP 2 Score: 48.9062 bits (115), Expect = 3.883e-8 Identity = 25/82 (30.49%), Postives = 41/82 (50.00%), Query Frame = -3 Query: 48 WEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIW 293 W+ + Y +IW + + LIW + IW+ Y +IW + + LIW + IW+ Y +IW + + LIW + IW Sbjct: 72 WQQVRYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIW 153 HSP 3 Score: 47.7506 bits (112), Expect = 7.981e-8 Identity = 24/74 (32.43%), Postives = 38/74 (51.35%), Query Frame = -3 Query: 75 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIW 296 IW+ Y +IW + + LIW + IW+ Y +IW + + LIW + IW+ Y +IW + + LIW Sbjct: 80 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIW 153 HSP 4 Score: 47.7506 bits (112), Expect = 9.792e-8 Identity = 27/93 (29.03%), Postives = 43/93 (46.24%), Query Frame = -3 Query: 18 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIWVIKT*HTVWE 296 IW+ Y +IW + + LIW + IW+ Y +IW + + LIW + IW+ Y +IW + LIW IW + +W+ Sbjct: 89 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIWQQVRYFLIWQQVRYFLIWQQERYFLIWQ 181
BLAST of SMED30014379 vs. Planmine SMEST
Match: SMESG000024267.1 (SMESG000024267.1) HSP 1 Score: 133.65 bits (335), Expect = 4.160e-38 Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QNMP NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQNV Sbjct: 282 QNMPPNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNV 356 HSP 2 Score: 110.538 bits (275), Expect = 1.007e-29 Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 1 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVXXXXXXXXXXXXXXXXNLAHGMGGQNMPP 312 QN P NMGGPNLPHNMGGQN+PPNMGG PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG NL H MGGQN+PP Sbjct: 264 QNHPPNMGGPNLPHNMGGQNMPPNMGG---------PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPP 358 HSP 3 Score: 103.99 bits (258), Expect = 2.823e-27 Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN---------VPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQN +PPNMG NMP NMG N+P NMG N+ Sbjct: 309 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNM 392 HSP 4 Score: 89.7373 bits (221), Expect = 3.475e-22 Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = -2 Query: 112 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLP 312 QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG N+P NMG N+PPNMG NMP NMG N+P Sbjct: 336 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNMPPNMGNTNMP 402
BLAST of SMED30014379 vs. Planmine SMEST
Match: SMESG000024267.1 (SMESG000024267.1) HSP 1 Score: 133.265 bits (334), Expect = 4.423e-38 Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QNMP NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQNV Sbjct: 263 QNMPPNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNV 337 HSP 2 Score: 110.538 bits (275), Expect = 9.176e-30 Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 1 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVXXXXXXXXXXXXXXXXNLAHGMGGQNMPP 312 QN P NMGGPNLPHNMGGQN+PPNMGG PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG NL H MGGQN+PP Sbjct: 245 QNHPPNMGGPNLPHNMGGQNMPPNMGG---------PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPP 339 HSP 3 Score: 103.605 bits (257), Expect = 3.268e-27 Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = -2 Query: 88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN---------VPPNMGGQNMPLNMGGPNLPHNMGGQNV 312 QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQN +PPNMG NMP NMG N+P NMG N+ Sbjct: 290 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNM 373 HSP 4 Score: 89.3521 bits (220), Expect = 3.946e-22 Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = -2 Query: 112 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLP 312 QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG N+P NMG N+PPNMG NMP NMG N+P Sbjct: 317 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNMPPNMGNTNMP 383 The following BLAST results are available for this feature:
BLAST of SMED30014379 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of SMED30014379 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30014379 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30014379 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30014379 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30014379 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30014379 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30014379 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014379 ID=SMED30014379|Name=SMED30014379|organism=Schmidtea mediterranea sexual|type=transcript|length=313bpback to top protein sequence of SMED30014379-orf-1 >SMED30014379-orf-1 ID=SMED30014379-orf-1|Name=SMED30014379-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=104bp QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPback to top Annotated Terms
The following terms have been associated with this transcript:
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