SMED30014379

Overview
NameSMED30014379
Smed IDSMED30014379
Length (bp)313
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30014379 (SMED30014379) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30014379 (SMED30014379) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30014379

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 13

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30014379h1SMcG0021131 dd_Smed_v4_2069_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30014379h1SMcG0021131 dd_Smed_v4_2069_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30014379h1SMcG0021131 dd_Smed_v4_2069_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30014379h1SMcG0021131 dd_Smed_v4_3842_3_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30014379h1SMcG0021131 dd_Smed_v4_3842_3_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30014379h1SMcG0021131 dd_Smed_v4_3842_3_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30014379h1SMcG0021131 dd_Smed_v4_3842_3_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30014379h1SMcG0012966 OX_Smed_1.0.11088ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
head regionSMED30014379h1SMcG0021131 OX_Smed_1.0.11088ox_Smed_v2PMID:24238224
Kao et al., 2013
whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30014379h1SMcG0021131 Contig37979uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30014379h1SMcG0021131 Contig37979newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30014379h1SMcG0022045 Contig37979uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30014379h1SMcG0022045 Contig37979newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30014379 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002019:20185..20496 +1302
v31.002019:20113..20443 -1127
v31.002019:20266..20541 +1048
v31.002019:20348..20675 -636
v31.002019:20002..20279 +539
Homology
BLAST of SMED30014379 vs. Ensembl Xenopus
Match: slc35f6 (solute carrier family 35 member F6 [Source:Xenbase;Acc:XB-GENE-5913793])

HSP 1 Score: 47.3654 bits (111), Expect = 4.564e-7
Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = -2
Query:   88 PLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 303
            PL +G    P  +G Q +P ++  Q +PL +G    P  +G Q  P  +G Q +PL +G    P   G Q +
Sbjct:  118 PLQLGAQQPPFQLGSQQLPLHLSAQQLPLQLGAQQPPLQLGAQQPPLQLGAQQLPLQLGAQQPPLQQGSQQM 189          

HSP 2 Score: 46.9802 bits (110), Expect = 5.855e-7
Identity = 23/74 (31.08%), Postives = 34/74 (45.95%), Query Frame = -2
Query:   88 NMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 309
             +PL +G    P  +G Q  P  +G Q +PL +     P  +G Q  P  +G Q  PL +G    P  +G Q +
Sbjct:   62 QLPLQLGAQQPPLQLGAQQTPLQLGAQQLPLQLVAQQPPLQLGAQQPPLQLGAQQPPLQLGAQQPPFQLGSQQL 135          

HSP 3 Score: 45.0542 bits (105), Expect = 2.958e-6
Identity = 25/74 (33.78%), Postives = 35/74 (47.30%), Query Frame = -2
Query:   91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312
            Q +PL +G    P  +G Q  P  +G Q +PL +G    P   G Q +   +G Q  PL +G   LP  +G Q 
Sbjct:  142 QQLPLQLGAQQPPLQLGAQQPPLQLGAQQLPLQLGAQQPPLQQGSQQMLLQLGPQQPPLQLGTQQLPLQLGAQY 215          
BLAST of SMED30014379 vs. TrEMBL
Match: A0A210PKB2 (Coagulation factor V OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT02772 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.611e-11
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            Q M ++MG   +  NMG Q V  ++G Q + L++G   +  +MG Q V  +MG Q M ++MGG  +  ++G Q V
Sbjct:   49 QYMTIDMGSQYMTVNMGSQYVTVDIGSQCVTLDIGNQYVTVDMGSQRVTVDMGSQYMTVDMGGQYMTVDLGSQYV 123          
BLAST of SMED30014379 vs. TrEMBL
Match: A0A433C6K8 (Uncharacterized protein (Fragment) OS=Curvibacter sp. OX=1888168 GN=EKK45_03700 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.435e-11
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 2
Query:   89 TFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFS 301
            T  PP + G   PP  +G   PP + GT  PP++ G   PP  +G + PP + GT+ PP + G   PP+ +
Sbjct:  407 TNVPPAIAGTHVPPAIAGTHVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTYVPPMIA 477          

HSP 2 Score: 65.855 bits (159), Expect = 2.693e-10
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  101 PILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIF 310
            P L G   PP  +G   PP + GT  PP + G   PP+ +G + PP + GT+ PP + G   PP  +G +
Sbjct:  402 PQLAGTNVPPAIAGTHVPPAIAGTHVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTY 471          

HSP 3 Score: 56.225 bits (134), Expect = 7.143e-7
Identity = 20/55 (36.36%), Postives = 31/55 (56.36%), Query Frame = 2
Query:   89 TFCPPILCGKLGPPIFSGIFWPPILGGTFCPPILCGKLGPPIFSGIFWPPILGGT 253
            T  PP + G   PP+ +G + PP + GT+ PP + G   PP  +G + PP++  T
Sbjct:  425 THVPPAIAGTHVPPVIAGTYVPPAIAGTYVPPAIAGTYVPPAIAGTYVPPMIAST 479          
BLAST of SMED30014379 vs. TrEMBL
Match: A0A210QQR5 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT00772 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.899e-10
Identity = 24/75 (32.00%), Postives = 40/75 (53.33%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
             N+  N GG N+  + GG N+  +  G N+  + GG N+  +  G N+  + GG N+  + GG N+  + GG N+
Sbjct:  231 SNIDRNDGGSNIDRDDGGSNIDRDDAGSNIDRDAGGSNIDRDDAGSNIDRDDGGSNIDRDDGGSNIDRDDGGSNI 305          

HSP 2 Score: 62.003 bits (149), Expect = 5.206e-9
Identity = 24/75 (32.00%), Postives = 40/75 (53.33%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
             N+  + GG N+  + GG N+  + GG N+  + G  N+  N GG N+  + GG N+  +  G N+  + GG N+
Sbjct:  195 SNIDRHDGGSNIDRDDGGSNIDRDAGGNNIDRDDGESNIDRNDGGSNIDRDDGGSNIDRDDAGSNIDRDAGGSNI 269          
BLAST of SMED30014379 vs. TrEMBL
Match: S4AUM6 (Translation initiation factor IF-2 protein (Fragment) OS=Enterococcus casseliflavus 14-MB-W-14 OX=1259825 GN=D932_02532 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.929e-10
Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QN P N G  N P+N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  147 QNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 221          

HSP 2 Score: 62.3882 bits (150), Expect = 2.546e-9
Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QN P N G  N P+N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  156 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 230          

HSP 3 Score: 62.3882 bits (150), Expect = 2.546e-9
Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QN P N G  N P+N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  165 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 239          

HSP 4 Score: 62.3882 bits (150), Expect = 2.546e-9
Identity = 39/75 (52.00%), Postives = 42/75 (56.00%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QN P N G  N P+N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  174 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 248          

HSP 5 Score: 58.5362 bits (140), Expect = 8.140e-8
Identity = 36/70 (51.43%), Postives = 39/70 (55.71%), Query Frame = -2
Query:  103 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNM 312
            QN P N G  N P+N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N 
Sbjct:  183 QNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQ 252          

HSP 6 Score: 57.3806 bits (137), Expect = 1.638e-7
Identity = 36/70 (51.43%), Postives = 38/70 (54.29%), Query Frame = -2
Query:   88 NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 297
            N G  N P N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  143 NQGQQNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 212          

HSP 7 Score: 52.7582 bits (125), Expect = 7.853e-6
Identity = 37/80 (46.25%), Postives = 40/80 (50.00%), Query Frame = -2
Query:   88 NMPLNMGGPNL------PHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 309
            N P N G  N        +N G QN P N G QN P N G  N P+N G QN P N G QN P N G  N P+N G QN 
Sbjct:  124 NRPNNQGSHNRVNNQENRNNQGQQNRPTNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNRPNNQGQQNR 203          
BLAST of SMED30014379 vs. TrEMBL
Match: A0A242A5R0 (Translation initiation factor IF-2 OS=Enterococcus sp. 8G7_MSG3316 OX=1834191 GN=infB PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.219e-9
Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2
Query:   91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312
            QN P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N G QN
Sbjct:  166 QNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQN 239          

HSP 2 Score: 63.1586 bits (152), Expect = 2.618e-9
Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2
Query:   91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312
            QN P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N G QN
Sbjct:  157 QNRPTNQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQN 230          

HSP 3 Score: 62.7734 bits (151), Expect = 3.371e-9
Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2
Query:   91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312
            QN P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N G QN
Sbjct:  184 QNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPANQGQQN 257          

HSP 4 Score: 62.7734 bits (151), Expect = 3.939e-9
Identity = 39/74 (52.70%), Postives = 39/74 (52.70%), Query Frame = -2
Query:   91 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 312
            QN P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N G QN
Sbjct:  175 QNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQN 248          

HSP 5 Score: 59.6918 bits (143), Expect = 4.993e-8
Identity = 37/71 (52.11%), Postives = 37/71 (52.11%), Query Frame = -2
Query:   91 PLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN 303
            P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N G QN
Sbjct:  151 PTNQGQQNRPTNQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQN 221          

HSP 6 Score: 58.9214 bits (141), Expect = 1.006e-7
Identity = 36/69 (52.17%), Postives = 36/69 (52.17%), Query Frame = -2
Query:  106 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHN 312
            QN P N G  N P N G QN P N G QN P N G  N P N G QN P N G QN P N G  N P N
Sbjct:  193 QNRPTNQGQQNRPANQGQQNRPANQGQQNRPTNQGQQNRPANQGQQNRPANQGQQNRPANQGQQNRPAN 261          
BLAST of SMED30014379 vs. Ensembl Nematostella
Match: EDO44181 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWK6])

HSP 1 Score: 48.9062 bits (115), Expect = 3.196e-8
Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = -3
Query:   48 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIW 296
            IW+   Y +IW  + + LIW  +    IW+   Y +IW  + + LIW  +    IW+ + Y +IW    + LIW  +    IW
Sbjct:   98 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIWQQVRYFLIWQQVRYFLIWQQERYFLIW 180          

HSP 2 Score: 48.9062 bits (115), Expect = 3.883e-8
Identity = 25/82 (30.49%), Postives = 41/82 (50.00%), Query Frame = -3
Query:   48 WEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIW 293
            W+ + Y +IW  + + LIW  +    IW+   Y +IW  + + LIW  +    IW+   Y +IW  + + LIW  +    IW
Sbjct:   72 WQQVRYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIW 153          

HSP 3 Score: 47.7506 bits (112), Expect = 7.981e-8
Identity = 24/74 (32.43%), Postives = 38/74 (51.35%), Query Frame = -3
Query:   75 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIW 296
            IW+   Y +IW  + + LIW  +    IW+   Y +IW  + + LIW  +    IW+   Y +IW  + + LIW
Sbjct:   80 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIW 153          

HSP 4 Score: 47.7506 bits (112), Expect = 9.792e-8
Identity = 27/93 (29.03%), Postives = 43/93 (46.24%), Query Frame = -3
Query:   18 IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGAKICH*IWEVLIYHIIWVGKTFLLIWGVKICHRIWVIKT*HTVWE 296
            IW+   Y +IW  + + LIW  +    IW+   Y +IW  + + LIW  +    IW+   Y +IW    + LIW       IW  +    +W+
Sbjct:   89 IWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQQERYFLIWQRERYFLIWQQVRYFLIWQQVRYFLIWQQERYFLIWQ 181          
BLAST of SMED30014379 vs. Planmine SMEST
Match: SMESG000024267.1 (SMESG000024267.1)

HSP 1 Score: 133.65 bits (335), Expect = 4.160e-38
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QNMP NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQNV
Sbjct:  282 QNMPPNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNV 356          

HSP 2 Score: 110.538 bits (275), Expect = 1.007e-29
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = -2
Query:    1 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVXXXXXXXXXXXXXXXXNLAHGMGGQNMPP 312
            QN P NMGGPNLPHNMGGQN+PPNMGG         PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG  NL H MGGQN+PP
Sbjct:  264 QNHPPNMGGPNLPHNMGGQNMPPNMGG---------PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPP 358          

HSP 3 Score: 103.99 bits (258), Expect = 2.823e-27
Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN---------VPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQN         +PPNMG  NMP NMG  N+P NMG  N+
Sbjct:  309 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNM 392          

HSP 4 Score: 89.7373 bits (221), Expect = 3.475e-22
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = -2
Query:  112 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLP 312
            QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG  N+P NMG  N+PPNMG  NMP NMG  N+P
Sbjct:  336 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNMPPNMGNTNMP 402          
BLAST of SMED30014379 vs. Planmine SMEST
Match: SMESG000024267.1 (SMESG000024267.1)

HSP 1 Score: 133.265 bits (334), Expect = 4.423e-38
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QNMP NMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQNV
Sbjct:  263 QNMPPNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNV 337          

HSP 2 Score: 110.538 bits (275), Expect = 9.176e-30
Identity = 85/104 (81.73%), Postives = 88/104 (84.62%), Query Frame = -2
Query:    1 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVXXXXXXXXXXXXXXXXNLAHGMGGQNMPP 312
            QN P NMGGPNLPHNMGGQN+PPNMGG         PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG  NL H MGGQN+PP
Sbjct:  245 QNHPPNMGGPNLPHNMGGQNMPPNMGG---------PNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPP 339          

HSP 3 Score: 103.605 bits (257), Expect = 3.268e-27
Identity = 63/84 (75.00%), Postives = 67/84 (79.76%), Query Frame = -2
Query:   88 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQN---------VPPNMGGQNMPLNMGGPNLPHNMGGQNV 312
            QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMPLNMGGPNLPHNMGGQN         +PPNMG  NMP NMG  N+P NMG  N+
Sbjct:  290 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNM 373          

HSP 4 Score: 89.3521 bits (220), Expect = 3.946e-22
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = -2
Query:  112 QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLP 312
            QNMPLNMGGPNLPHNMGGQNVPPN+GGQNMP NMG  N+P NMG  N+PPNMG  NMP NMG  N+P
Sbjct:  317 QNMPLNMGGPNLPHNMGGQNVPPNIGGQNMPPNMGNTNMPPNMGNTNMPPNMGNTNMPPNMGNTNMP 383          
The following BLAST results are available for this feature:
BLAST of SMED30014379 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
slc35f64.564e-731.94solute carrier family 35 member F6 [Source:Xenbase... [more]
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BLAST of SMED30014379 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A210PKB23.611e-1136.00Coagulation factor V OS=Mizuhopecten yessoensis OX... [more]
A0A433C6K86.435e-1136.62Uncharacterized protein (Fragment) OS=Curvibacter ... [more]
A0A210QQR53.899e-1032.00Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
S4AUM66.929e-1052.00Translation initiation factor IF-2 protein (Fragme... [more]
A0A242A5R02.219e-952.70Translation initiation factor IF-2 OS=Enterococcus... [more]
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BLAST of SMED30014379 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO441813.196e-831.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30014379 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30014379 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000024267.14.160e-3897.33SMESG000024267.1[more]
SMESG000024267.14.423e-3897.33SMESG000024267.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014379 ID=SMED30014379|Name=SMED30014379|organism=Schmidtea mediterranea sexual|type=transcript|length=313bp
TGGTGGCATATTTTGGCCTCCCATACCGTGTGCTAAGTTTTGATTACCCA
TATTCGGTGGCATATTTTGACCCCCCATATTAGGAGGAACGTTTTGCCCA
CCCATATTATGTGGTAAATTAGGACCTCCCATATTCAGTGGCATATTTTG
GCCCCCCATATTAGGAGGAACGTTTTGCCCACCCATATTATGTGGTAAAT
TAGGACCTCCCATATTCAGTGGCATATTTTGGCCCCCCATATTAGGAGGA
ACGTTTTGCCCACCCATATTATGTGGTAAATTAGGACCTCCCATATTCAG
TGGCATATTTTGG
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protein sequence of SMED30014379-orf-1

>SMED30014379-orf-1 ID=SMED30014379-orf-1|Name=SMED30014379-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=104bp
QNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPLNMGGPNLPHNMGGQNVPP
NMGGQNMPLNMGGPNLPHNMGGQNVPPNMGGQNMPPNMGNQNLAHGMGGQ
NMPP
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head