RNA polymerase II-associated protein 1

Overview
NameRNA polymerase II-associated protein 1
Smed IDSMED30014357
Length (bp)3618
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA polymerase II-associated protein 1 (SMED30014357) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA polymerase II-associated protein 1 (SMED30014357) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA polymerase II-associated protein 1 (SMED30014357) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA polymerase II-associated protein 1 (SMED30014357) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30014357

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30014357SMESG000050104.1 SMESG000046101.1 SMESG000046100.1 SmedASXL_016537SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30014357SMESG000050104.1 SMESG000046101.1 SMESG000046100.1 SmedASXL_016537SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Human
Match: RPAP1 (RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:HGNC:24567])

HSP 1 Score: 86.2705 bits (212), Expect = 3.280e-16
Identity = 106/477 (22.22%), Postives = 202/477 (42.35%), Query Frame = 3 
Query:  183 NSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN---LKIKRLKKETNEMKMLKKIKDICNEKP------EEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVL---------DKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT------------ASMLRLVRCLCQASESIAHKL 1514
            N   +   +       ++++G    + +A++     HE+N ++L   +  EI Q +  +     P  +  +++    + +  +  + E +      ++  E+P       E    +K+E     +     LP++P   +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  +++++   E        +V   L+D G +FL R+ +D+       +  A+  L A+L      +  + T +W  Y  A   P +  Q               KA+   S  E+S+   D L   D++  L+  T    RL ++L   +       +   + ++ R+ARHS+E A  V  +   L+ T++   L +  +               A+ ++L+R L  A  +IA +L
Sbjct:  192 NQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALA----LPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAG-SVLSLLLDAGFLFLLRFSLDD--RVDGVIATAIRALRALLVAPGDEELLDSTFSW--YHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK-SPEEESRPPPD-LARHDVIKGLLA-TSLLPRLRYVLEVTYPG--PAVVLDILAVLIRLARHSLESATRVL-ECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARL 639

HSP 2 Score: 59.6918 bits (143), Expect = 4.312e-8
Identity = 48/185 (25.95%), Postives = 85/185 (45.95%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ +  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  + +  Y  P E ++ L+  Y+  L    +      +LY + + H+N F+F+Q  +SS    E        +Q+  +LA    E  R+  + H KL    +    E Y++LP  R  +L +L
Sbjct: 1204 LTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQDPQSS---DEVKAARRSMLQKTWLLA---DEGLRQHLL-HYKLPNSTLPEGFELYSQLPPLRQHYLQRL 1381
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Human
Match: RPAP1 (RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:HGNC:24567])

HSP 1 Score: 85.5001 bits (210), Expect = 4.701e-16
Identity = 106/479 (22.13%), Postives = 202/479 (42.17%), Query Frame = 3 
Query:  183 NSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN---LKIKRLKKETNEMKMLKKIKDICNEKP------EEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVL-----------DKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT------------ASMLRLVRCLCQASESIAHKL 1514
            N   +   +       ++++G    + +A++     HE+N ++L   +  EI Q +  +     P  +  +++    + +  +  + E +      ++  E+P       E    +K+E     +     LP++P   +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  +++++   E        +V   L+D G +FL R+ +D+       +  A+  L A+L      +  + T +W  Y  A   P +  Q               K K +   S  E+S+   D L   D++  L+  T    RL ++L   +       +   + ++ R+ARHS+E A  V  +   L+ T++   L +  +               A+ ++L+R L  A  +IA +L
Sbjct:  192 NQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALA----LPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAG-SVLSLLLDAGFLFLLRFSLDD--RVDGVIATAIRALRALLVAPGDEELLDSTFSW--YHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK---SPEEESRPPPD-LARHDVIKGLLA-TSLLPRLRYVLEVTYPG--PAVVLDILAVLIRLARHSLESATRVL-ECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARL 639
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Human
Match: RPAP1 (RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:HGNC:24567])

HSP 1 Score: 84.7297 bits (208), Expect = 8.834e-16
Identity = 105/465 (22.58%), Postives = 199/465 (42.80%), Query Frame = 3 
Query:  219 INASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN---LKIKRLKKETNEMKMLKKIKDICNEKP------EEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ---------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTEC------------TASMLRLVRCLCQASESIAHKL 1514
                ++++G    + +A++     HE+N ++L   +  EI Q +  +     P  +  +++    + +  +  + E +      ++  E+P       E    +K+E     +     LP++P   +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  +++++   E        +V   L+D G +FL R+ +D+       +  A+  L A+L      +  + T +W  Y  A   P +  Q               KA+   S  E+S+   D L   D++  L+  T    RL ++L   +       +   + ++ R+ARHS+E A  V  +   L+ T++   L +  +               A+ ++L+R L  A  +IA +L
Sbjct:  204 FQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALA----LPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAG-SVLSLLLDAGFLFLLRFSLDD--RVDGVIATAIRALRALLVAPGDEELLDSTFSW--YHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK-SPEEESRPPPD-LARHDVIKGLLA-TSLLPRLRYVLEVTYPG--PAVVLDILAVLIRLARHSLESATRVL-ECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARL 639
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Fly
Match: CG32104 (gene:FBgn0052104 transcript:FBtr0075986)

HSP 1 Score: 71.2478 bits (173), Expect = 5.425e-12
Identity = 88/317 (27.76%), Postives = 139/317 (43.85%), Query Frame = 3 
Query:  534 LSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLK-----SIRFHISGAGLPPXXXXXXXXLFDKPPT-EFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQ-QHLHQALE----------LLD--------------AVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAE-DIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAND 1388
            +  L  S   N++N N +E  KL WM+  D  A+ S+LK     + RF   G  LP         L D+  + + D     L+ HGEE  R GY + ELF LARS  L QR  A   +  + +       +Y+        SL    I FL R+ +D+    Q + + +AL           LLD               VL NG+  + ++   N     +AF    +         +A +    SE     DD  +AE D++ CL+ +T+  +R+ F+LV   +  D  T+   ++++ RIAR S ++A  +AN+
Sbjct:  277 IELLQESDKGNWLNFNLVEEHKLAWMR--DIPAKISELKPGEQFNARFDWKGVLLP-------HTLKDQDASKQID--ERELYLHGEEADRPGYALQELFRLARSTVLQQRLSAFGAIAGIFS-------IYNQGFYDQVLSLPISKIFFLLRFGLDDNAPAQLEVVSRALSNLFYNETDEVLLDHVHDNAYCHWQPTLEVLGNGSDGNGEDTDTN----SIAFLQRYMKLLTTSKSVRAEVDEDESESRTSMDDFQLAETDLMDCLL-RTNILQRIRFILVS--VKPDNSTVESCLKLLIRIARTSTKVARQLANE 568

HSP 2 Score: 59.6918 bits (143), Expect = 1.953e-8
Identity = 33/112 (29.46%), Postives = 54/112 (48.21%), Query Frame = 3 
Query: 3030 IDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLN 3365
            +D ++   L+    E + + S  D L ++LVL P A ++  K+RR LW  + + +R I  D S  +  +  YL+P E +  L+  Y D L    +      + Y I  HH N
Sbjct: 1095 VDKARFEPLYYLFVEHFEAASYGDELFSSLVLVPLAQKYDNKWRRRLWSEHVQAVRFINCDESMLMGGLFAYLEPVEEEPSLVKLYGDALAQKMV--RPGSIAYRIAQHHFN 1204
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Zebrafish
Match: rpap1 (RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1])

HSP 1 Score: 86.6557 bits (213), Expect = 1.556e-16
Identity = 66/260 (25.38%), Postives = 121/260 (46.54%), Query Frame = 3 
Query:  198 CNSTEKLINASSVISGMRAENIDADKLLNNSHEKNS-QLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRL-KKETNEMKMLKK-----------IKDICNEKPEEDETIEKME-------IVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVY 911
            C S    +    ++SG      ++   +   HE+N  +L   S  +I + + ++     P  ++ +++ K +R    ET+   + +K             +I + +  ++ T+E+ E       +V   + +   LPI P   +++M+ +E +KLEW + +      S  K++  RF  +G  +PP              T+  P    LHHHG+EP   GY++ ELF L+RS    QR+LA+STL N+L K+   E ++
Sbjct:  237 CGSFTDSVGGPLLLSGKGLGIANSTVEMMKIHEENQMKLQAMSQSQILEEQKKVLAQLDPRLVDFVRSRKAQRTPGSETSSSPVQRKDFLKEPSANSASPEIIDTRKAKESTMEEDEEYGDGQLLVQSPISE-EELPIRPQKEWVHMDKVEPEKLEWTRDLPAPKRSSTKKAMQARFDFAGTLIPP--------------TKDLPTHLGLHHHGDEPELAGYSLQELFLLSRSKLNQQRNLAISTLANVLTKARAGEFIF 481

HSP 2 Score: 64.6994 bits (156), Expect = 7.726e-10
Identity = 76/290 (26.21%), Postives = 122/290 (42.07%), Query Frame = 3 
Query: 2598 PIDQSILELLLEFLPNIRTLY-------ESFVPGFRQMENPKPGFIQP-----INSRFVPIDWFDYPFTKQCKKN---VNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNH---KVVPITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNF--LTQYFANISQIDI-------SKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            P   ++L   L  LP+IR  Y       E  V   R     +  FI+      +    +P DW   P     +++   V    E++ L  S QS   CL ++  LE+     H    V P+    RL C  L ++D    L +PV       F  LTQ  A +  +D+       +    L+ +L  QY +VS  D L    VL P   R+ V  +  ++  +   LR + V L +  IP+ ++  P E  + L+  Y+  L    +  +   +LY + + HLN F+F+Q
Sbjct: 1088 PAVSALLRDALHHLPSIRGCYLSHLAHMEPSVHSSRDRYLGQTPFIKSHLLPELTGPSLPSDWPFLPLISLYERSGLSVGQQVESLPLG-SVQSATHCLQWLLLLESWR--EHTLAAVPPVARFARLACVFLCSSDLF--LERPVQEFTWALFRRLTQP-AQLEALDLGSPPPGLASFHDLYSALLAQYEAVSFGDPLFGCFVLLPLQRRYSVTMKLAVFGEHVGMLRSLGVSLQQLPIPLEKFTSPMEDSLPLLRLYFRALVTGALKRNWCPVLYVVAVAHLNAFIFSQ 1371
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Zebrafish
Match: rpap1 (RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1])

HSP 1 Score: 85.1149 bits (209), Expect = 4.122e-16
Identity = 62/229 (27.07%), Postives = 111/229 (48.47%), Query Frame = 3 
Query:  291 HEKNS-QLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRL-KKETNEMKMLKK-----------IKDICNEKPEEDETIEKME-------IVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVY 911
            HE+N  +L   S  +I + + ++     P  ++ +++ K +R    ET+   + +K             +I + +  ++ T+E+ E       +V   + +   LPI P   +++M+ +E +KLEW + +      S  K++  RF  +G  +PP              T+  P    LHHHG+EP   GY++ ELF L+RS    QR+LA+STL N+L K+   E ++
Sbjct:  235 HEENQMKLQAMSQSQILEEQKKVLAQLDPRLVDFVRSRKAQRTPGSETSSSPVQRKDFLKEPSANSASPEIIDTRKAKESTMEEDEEYGDGQLLVQSPISE-EELPIRPQKEWVHMDKVEPEKLEWTRDLPAPKRSSTKKAMQARFDFAGTLIPP--------------TKDLPTHLGLHHHGDEPELAGYSLQELFLLSRSKLNQQRNLAISTLANVLTKARAGEFIF 448

HSP 2 Score: 65.0846 bits (157), Expect = 5.208e-10
Identity = 76/290 (26.21%), Postives = 122/290 (42.07%), Query Frame = 3 
Query: 2598 PIDQSILELLLEFLPNIRTLY-------ESFVPGFRQMENPKPGFIQP-----INSRFVPIDWFDYPFTKQCKKN---VNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNH---KVVPITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNF--LTQYFANISQIDI-------SKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            P   ++L   L  LP+IR  Y       E  V   R     +  FI+      +    +P DW   P     +++   V    E++ L  S QS   CL ++  LE+     H    V P+    RL C  L ++D    L +PV       F  LTQ  A +  +D+       +    L+ +L  QY +VS  D L    VL P   R+ V  +  ++  +   LR + V L +  IP+ ++  P E  + L+  Y+  L    +  +   +LY + + HLN F+F+Q
Sbjct: 1055 PAVSALLRDALHHLPSIRGCYLSHLAHMEPSVHSSRDRYLGQTPFIKSHLLPELTGPSLPSDWPFLPLISLYERSGLSVGQQVESLPLG-SVQSATHCLQWLLLLESWR--EHTLAAVPPVARFARLACVFLCSSDLF--LERPVQEFTWALFRRLTQP-AQLEALDLGSPPPGLASFHDLYSALLAQYEAVSFGDPLFGCFVLLPLQRRYSVTMKLAVFGEHVGMLRSLGVSLQQLPIPLEKFTSPMEDSLPLLRLYFRALVTGALKRNWCPVLYVVAVAHLNAFIFSQ 1338
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Zebrafish
Match: rpap1 (RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1])

HSP 1 Score: 85.1149 bits (209), Expect = 4.122e-16
Identity = 62/229 (27.07%), Postives = 111/229 (48.47%), Query Frame = 3 
Query:  291 HEKNS-QLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRL-KKETNEMKMLKK-----------IKDICNEKPEEDETIEKME-------IVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVY 911
            HE+N  +L   S  +I + + ++     P  ++ +++ K +R    ET+   + +K             +I + +  ++ T+E+ E       +V   + +   LPI P   +++M+ +E +KLEW + +      S  K++  RF  +G  +PP              T+  P    LHHHG+EP   GY++ ELF L+RS    QR+LA+STL N+L K+   E ++
Sbjct:  235 HEENQMKLQAMSQSQILEEQKKVLAQLDPRLVDFVRSRKAQRTPGSETSSSPVQRKDFLKEPSANSASPEIIDTRKAKESTMEEDEEYGDGQLLVQSPISE-EELPIRPQKEWVHMDKVEPEKLEWTRDLPAPKRSSTKKAMQARFDFAGTLIPP--------------TKDLPTHLGLHHHGDEPELAGYSLQELFLLSRSKLNQQRNLAISTLANVLTKARAGEFIF 448

HSP 2 Score: 65.0846 bits (157), Expect = 5.208e-10
Identity = 76/290 (26.21%), Postives = 122/290 (42.07%), Query Frame = 3 
Query: 2598 PIDQSILELLLEFLPNIRTLY-------ESFVPGFRQMENPKPGFIQP-----INSRFVPIDWFDYPFTKQCKKN---VNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNH---KVVPITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNF--LTQYFANISQIDI-------SKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            P   ++L   L  LP+IR  Y       E  V   R     +  FI+      +    +P DW   P     +++   V    E++ L  S QS   CL ++  LE+     H    V P+    RL C  L ++D    L +PV       F  LTQ  A +  +D+       +    L+ +L  QY +VS  D L    VL P   R+ V  +  ++  +   LR + V L +  IP+ ++  P E  + L+  Y+  L    +  +   +LY + + HLN F+F+Q
Sbjct: 1055 PAVSALLRDALHHLPSIRGCYLSHLAHMEPSVHSSRDRYLGQTPFIKSHLLPELTGPSLPSDWPFLPLISLYERSGLSVGQQVESLPLG-SVQSATHCLQWLLLLESWR--EHTLAAVPPVARFARLACVFLCSSDLF--LERPVQEFTWALFRRLTQP-AQLEALDLGSPPPGLASFHDLYSALLAQYEAVSFGDPLFGCFVLLPLQRRYSVTMKLAVFGEHVGMLRSLGVSLQQLPIPLEKFTSPMEDSLPLLRLYFRALVTGALKRNWCPVLYVVAVAHLNAFIFSQ 1338
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Match: gdf9 (growth differentiation factor 9 [Source:Xenbase;Acc:XB-GENE-478149])

HSP 1 Score: 94.7449 bits (234), Expect = 6.143e-19
Identity = 74/256 (28.91%), Postives = 129/256 (50.39%), Query Frame = 3 
Query:  243 GMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGE 998
            G+ A   +A K+    HE+N  +L   S  EI Q + ++     P+ +  +K+ K K+    +++ +K  ++ + +  ++P+     +  E+   +  DL   P+ P   +++M+ +E +KLEWMK +    +    K +  RF + G  +PPD E          PT        LHHHGEE  R GY++ ELF L+RS F+ QR+L++  L  ++ K+   E        +V Q L+D G +FL R+ ID+  +
Sbjct:  205 GISAGQEEARKI----HEENMEKLRSLSKEEILQEQEQLLSQLDPKLVAFLKSKKGKKTTDGDSSNVKASQEPRPVHLKEPQYLSEEDTSEMSPRRTDDL---PVKPQKEWVHMDAVEFEKLEWMKNLPLARQNKTKKGMQARFSLKGDLIPPDSEI---------PTHM-----GLHHHGEEAERAGYSLQELFHLSRSQFIQQRTLSLQILGRIVQKAKQGEFSAALK-GSVLQLLLDAGFLFLLRFSIDDTAD 438

HSP 2 Score: 64.6994 bits (156), Expect = 9.707e-10
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = 3 
Query: 3030 IDISKISGLFD---SLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            + +  ++  +D    L EQ+ SVS  D L    VL P   RF V+ R+ ++      LR + V L E  +P+  Y  P E +++L+  Y+  L    + ++   +LY + + H+N F+F+Q
Sbjct: 1130 VPVPGLASFYDFYMDLLEQFESVSFGDPLFGTFVLLPLQRRFSVQLRQAVFGERVSCLRSLAVSLKELPVPLALYTSPSEDNLDLLHLYFRTLVTGALRQTWCPVLYVVAVAHVNSFIFSQ 1250
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Match: gdf9 (growth differentiation factor 9 [Source:Xenbase;Acc:XB-GENE-478149])

HSP 1 Score: 94.7449 bits (234), Expect = 7.200e-19
Identity = 75/262 (28.63%), Postives = 132/262 (50.38%), Query Frame = 3 
Query:  243 GMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKDICNEKPE--EDETIEKMEIVDDKVKDLSF----LPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGE 998
            G+ A   +A K+    HE+N  +L   S  EI Q + ++     P+ +  +K+ K K+    +++ +K  ++ + +  ++P+   +E   +M     + K+ +     LP+ P   +++M+ +E +KLEWMK +    +    K +  RF + G  +PPD E          PT        LHHHGEE  R GY++ ELF L+RS F+ QR+L++  L  ++ K+   E        +V Q L+D G +FL R+ ID+  +
Sbjct:  218 GISAGQEEARKI----HEENMEKLRSLSKEEILQEQEQLLSQLDPKLVAFLKSKKGKKTTDGDSSNVKASQEPRPVHLKEPQYLSEEDTSEMSPRRSEEKESAVAADDLPVKPQKEWVHMDAVEFEKLEWMKNLPLARQNKTKKGMQARFSLKGDLIPPDSEI---------PTHM-----GLHHHGEEAERAGYSLQELFHLSRSQFIQQRTLSLQILGRIVQKAKQGEFSAALK-GSVLQLLLDAGFLFLLRFSIDDTAD 460

HSP 2 Score: 71.633 bits (174), Expect = 8.853e-12
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 3 
Query: 3030 IDISKISGLFD---SLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKH-FVNSTV--EFYAELPDKRVQHL 3581
            + +  ++  +D    L EQ+ SVS  D L    VL P   RF V+ R+ ++      LR + V L E  +P+  Y  P E +++L+  Y+  L    + ++   +LY + + H+N F+F+Q     + A E D      +++  +L   D         +HL  YK  F +S V  E Y +LP  R ++L
Sbjct: 1234 VPVPGLASFYDFYMDLLEQFESVSFGDPLFGTFVLLPLQRRFSVQLRQAVFGERVSCLRSLAVSLKELPVPLALYTSPSEDNLDLLHLYFRTLVTGALRQTWCPVLYVVAVAHVNSFIFSQ----DQVAQEVDAARKSMLRKIYLLVDQD-------LRRHLLFYKQLFSDSPVGFELYEQLPPIRERYL 1412
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Match: gdf9 (growth differentiation factor 9 [Source:Xenbase;Acc:XB-GENE-478149])

HSP 1 Score: 93.2041 bits (230), Expect = 7.351e-19
Identity = 75/262 (28.63%), Postives = 132/262 (50.38%), Query Frame = 3 
Query:  243 GMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKDICNEKPE--EDETIEKMEIVDDKVKDLSF----LPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGE 998
            G+ A   +A K+    HE+N  +L   S  EI Q + ++     P+ +  +K+ K K+    +++ +K  ++ + +  ++P+   +E   +M     + K+ +     LP+ P   +++M+ +E +KLEWMK +    +    K +  RF + G  +PPD E          PT        LHHHGEE  R GY++ ELF L+RS F+ QR+L++  L  ++ K+   E        +V Q L+D G +FL R+ ID+  +
Sbjct:  218 GISAGQEEARKI----HEENMEKLRSLSKEEILQEQEQLLSQLDPKLVAFLKSKKGKKTTDGDSSNVKASQEPRPVHLKEPQYLSEEDTSEMSPRRSEEKESAVAADDLPVKPQKEWVHMDAVEFEKLEWMKNLPLARQNKTKKGMQARFSLKGDLIPPDSEI---------PTHM-----GLHHHGEEAERAGYSLQELFHLSRSQFIQQRTLSLQILGRIVQKAKQGEFSAALKG-SVLQLLLDAGFLFLLRFSIDDTAD 460
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Match: gdf9 (growth differentiation factor 9 [Source:Xenbase;Acc:XB-GENE-478149])

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 81/272 (29.78%), Postives = 135/272 (49.63%), Query Frame = 3 
Query:  243 GMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKDICNEKP----EED-------ETIEKMEIVDDKV----KDLSF-LPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGE 998
            G+ A   +A K+    HE+N  +L   S  EI Q + ++     P+ +  +K+ K K+    +++ +K  ++ + +  ++P    EED        + EK   V   +    +DLS  LP+ P   +++M+ +E +KLEWMK +    +    K +  RF + G  +PPD E          PT        LHHHGEE  R GY++ ELF L+RS F+ QR+L++  L  ++ K+   E        +V Q L+D G +FL R+ ID+  +
Sbjct:  191 GISAGQEEARKI----HEENMEKLRSLSKEEILQEQEQLLSQLDPKLVAFLKSKKGKKTTDGDSSNVKASQEPRPVHLKEPQYLSEEDTSEMSPRRSEEKESAVAGNLSLVWQDLSDDLPVKPQKEWVHMDAVEFEKLEWMKNLPLARQNKTKKGMQARFSLKGDLIPPDSEI---------PTHM-----GLHHHGEEAERAGYSLQELFHLSRSQFIQQRTLSLQILGRIVQKAKQGEFSAALK-GSVLQLLLDAGFLFLLRFSIDDTAD 443

HSP 2 Score: 64.6994 bits (156), Expect = 9.820e-10
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = 3 
Query: 3030 IDISKISGLFD---SLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            + +  ++  +D    L EQ+ SVS  D L    VL P   RF V+ R+ ++      LR + V L E  +P+  Y  P E +++L+  Y+  L    + ++   +LY + + H+N F+F+Q
Sbjct: 1146 VPVPGLASFYDFYMDLLEQFESVSFGDPLFGTFVLLPLQRRFSVQLRQAVFGERVSCLRSLAVSLKELPVPLALYTSPSEDNLDLLHLYFRTLVTGALRQTWCPVLYVVAVAHVNSFIFSQ 1266
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Match: gdf9 (growth differentiation factor 9 [Source:Xenbase;Acc:XB-GENE-478149])

HSP 1 Score: 87.8113 bits (216), Expect = 1.017e-16
Identity = 75/263 (28.52%), Postives = 133/263 (50.57%), Query Frame = 3 
Query:  243 GMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKDICNEKPE--EDETIEKMEIVDDKVKDLSF----LPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNK-SSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGE 998
            G+ A   +A K+    HE+N  +L   S  EI Q + ++     P+ +  +K+ K K+    +++ +K  ++ + +  ++P+   +E   +M     + K+ +     LP+ P   +++M+ +E +KLEWMK +    +    K +  RF + G  +PPD E          PT        LHHHGEE  R GY++ ELF L+RS F+ QR+L++  L  +  + S+ L+        +V Q L+D G +FL R+ ID+  +
Sbjct:  187 GISAGQEEARKI----HEENMEKLRSLSKEEILQEQEQLLSQLDPKLVAFLKSKKGKKTTDGDSSNVKASQEPRPVHLKEPQYLSEEDTSEMSPRRSEEKESAVAADDLPVKPQKEWVHMDAVEFEKLEWMKNLPLARQNKTKKGMQARFSLKGDLIPPDSEI---------PTHM-----GLHHHGEEAERAGYSLQELFHLSRSQFIQQRTLSLQILGRIQGEFSAALKG-------SVLQLLLDAGFLFLLRFSIDDTAD 424

HSP 2 Score: 72.0182 bits (175), Expect = 6.351e-12
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 3 
Query: 3030 IDISKISGLFD---SLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKH-FVNSTV--EFYAELPDKRVQHL 3581
            + +  ++  +D    L EQ+ SVS  D L    VL P   RF V+ R+ ++      LR + V L E  +P+  Y  P E +++L+  Y+  L    + ++   +LY + + H+N F+F+Q     + A E D      +++  +L   D         +HL  YK  F +S V  E Y +LP  R ++L
Sbjct: 1182 VPVPGLASFYDFYMDLLEQFESVSFGDPLFGTFVLLPLQRRFSVQLRQAVFGERVSCLRSLAVSLKELPVPLALYTSPSEDNLDLLHLYFRTLVTGALRQTWCPVLYVVAVAHVNSFIFSQ----DQVAQEVDAARKSMLRKIYLLVDQD-------LRRHLLFYKQLFSDSPVGFELYEQLPPIRERYL 1360
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Mouse
Match: Rpap1 (RNA polymerase II associated protein 1 [Source:MGI Symbol;Acc:MGI:1916175])

HSP 1 Score: 90.1225 bits (222), Expect = 1.224e-17
Identity = 112/493 (22.72%), Postives = 218/493 (44.22%), Query Frame = 3 
Query:  168 PYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN-------LKIKRLKKETNEMK--MLKKIKDICNEKPEEDETIEKME-----IVDDKVKD-------LSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ-------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT------------ASMLRLVRCLCQASESIAHKL 1514
            P  RD S N+        +  ++++G    +  A++ +   HE+N ++L      EI + + ++     P  +  +++          K  KK++ +    ++ K + + + +  E  T +K+E      V+DK++D          LP++P+ ++++M+T+E+DKL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V + L+D G +FL R+ +D+  +    +  A+  L  +L      +  + T +W  Y  A   P +  Q          + +  ++     E+       L   D++  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +               AS ++L+R L  A  +IA +L
Sbjct:  188 PSFRDRS-NQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDDRVD--SVIAAAVRALRTLLVAPGDEELLDRTFSW--YHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLA-TNLLPRLRYVL---EVTCPGPSVILDILAVLIRLARHSLESAMRVL-ECPRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARL 655
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Mouse
Match: Rpap1 (RNA polymerase II associated protein 1 [Source:MGI Symbol;Acc:MGI:1916175])

HSP 1 Score: 90.5077 bits (223), Expect = 1.226e-17
Identity = 112/493 (22.72%), Postives = 218/493 (44.22%), Query Frame = 3 
Query:  168 PYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN-------LKIKRLKKETNEMK--MLKKIKDICNEKPEEDETIEKME-----IVDDKVKD-------LSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ-------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTEC------------TASMLRLVRCLCQASESIAHKL 1514
            P  RD S N+        +  ++++G    +  A++ +   HE+N ++L      EI + + ++     P  +  +++          K  KK++ +    ++ K + + + +  E  T +K+E      V+DK++D          LP++P+ ++++M+T+E+DKL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V + L+D G +FL R+ +D+  +    +  A+  L  +L      +  + T +W  Y  A   P +  Q          + +  ++     E+       L   D++  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +               AS ++L+R L  A  +IA +L
Sbjct:  188 PSFRDRS-NQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDDRVD--SVIAAAVRALRTLLVAPGDEELLDRTFSW--YHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLA-TNLLPRLRYVL---EVTCPGPSVILDILAVLIRLARHSLESAMRVL-ECPRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARL 655

HSP 2 Score: 62.3882 bits (150), Expect = 4.390e-9
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESS---RTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ S  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  +P+  Y +P E  + L+  Y+  L    +      +LY + + H+N F+F Q  +SS   +TA  S       +QR  +L     E  R+  + H KL    +    E Y++LP  R Q L  L
Sbjct: 1220 LTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRS------MLQRTWLLT---DEGLRQHLL-HYKLPNSSLPEGFELYSQLPRLRQQCLQTL 1397
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Mouse
Match: Rpap1 (RNA polymerase II associated protein 1 [Source:MGI Symbol;Acc:MGI:1916175])

HSP 1 Score: 90.5077 bits (223), Expect = 1.226e-17
Identity = 112/493 (22.72%), Postives = 218/493 (44.22%), Query Frame = 3 
Query:  168 PYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN-------LKIKRLKKETNEMK--MLKKIKDICNEKPEEDETIEKME-----IVDDKVKD-------LSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ-------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTEC------------TASMLRLVRCLCQASESIAHKL 1514
            P  RD S N+        +  ++++G    +  A++ +   HE+N ++L      EI + + ++     P  +  +++          K  KK++ +    ++ K + + + +  E  T +K+E      V+DK++D          LP++P+ ++++M+T+E+DKL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V + L+D G +FL R+ +D+  +    +  A+  L  +L      +  + T +W  Y  A   P +  Q          + +  ++     E+       L   D++  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +               AS ++L+R L  A  +IA +L
Sbjct:  188 PSFRDRS-NQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDDRVD--SVIAAAVRALRTLLVAPGDEELLDRTFSW--YHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLA-TNLLPRLRYVL---EVTCPGPSVILDILAVLIRLARHSLESAMRVL-ECPRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARL 655

HSP 2 Score: 62.3882 bits (150), Expect = 4.390e-9
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESS---RTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ S  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  +P+  Y +P E  + L+  Y+  L    +      +LY + + H+N F+F Q  +SS   +TA  S       +QR  +L     E  R+  + H KL    +    E Y++LP  R Q L  L
Sbjct: 1220 LTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRS------MLQRTWLLT---DEGLRQHLL-HYKLPNSSLPEGFELYSQLPRLRQQCLQTL 1397
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Mouse
Match: Rpap1 (RNA polymerase II associated protein 1 [Source:MGI Symbol;Acc:MGI:1916175])

HSP 1 Score: 90.5077 bits (223), Expect = 1.226e-17
Identity = 112/493 (22.72%), Postives = 218/493 (44.22%), Query Frame = 3 
Query:  168 PYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN-------LKIKRLKKETNEMK--MLKKIKDICNEKPEEDETIEKME-----IVDDKVKD-------LSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ-------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTEC------------TASMLRLVRCLCQASESIAHKL 1514
            P  RD S N+        +  ++++G    +  A++ +   HE+N ++L      EI + + ++     P  +  +++          K  KK++ +    ++ K + + + +  E  T +K+E      V+DK++D          LP++P+ ++++M+T+E+DKL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V + L+D G +FL R+ +D+  +    +  A+  L  +L      +  + T +W  Y  A   P +  Q          + +  ++     E+       L   D++  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +               AS ++L+R L  A  +IA +L
Sbjct:  188 PSFRDRS-NQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDDRVD--SVIAAAVRALRTLLVAPGDEELLDRTFSW--YHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLA-TNLLPRLRYVL---EVTCPGPSVILDILAVLIRLARHSLESAMRVL-ECPRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARL 655

HSP 2 Score: 62.3882 bits (150), Expect = 4.390e-9
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESS---RTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ S  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  +P+  Y +P E  + L+  Y+  L    +      +LY + + H+N F+F Q  +SS   +TA  S       +QR  +L     E  R+  + H KL    +    E Y++LP  R Q L  L
Sbjct: 1220 LTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRS------MLQRTWLLT---DEGLRQHLL-HYKLPNSSLPEGFELYSQLPRLRQQCLQTL 1397
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Match: sp|Q80TE0|RPAP1_MOUSE (RNA polymerase II-associated protein 1 OS=Mus musculus OX=10090 GN=Rpap1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.579e-17
Identity = 112/493 (22.72%), Postives = 218/493 (44.22%), Query Frame = 3 
Query:  168 PYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN-------LKIKRLKKETNEMK--MLKKIKDICNEKPEEDETIEKME-----IVDDKVKD-------LSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQ-------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTEC------------TASMLRLVRCLCQASESIAHKL 1514
            P  RD S N+        +  ++++G    +  A++ +   HE+N ++L      EI + + ++     P  +  +++          K  KK++ +    ++ K + + + +  E  T +K+E      V+DK++D          LP++P+ ++++M+T+E+DKL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V + L+D G +FL R+ +D+  +    +  A+  L  +L      +  + T +W  Y  A   P +  Q          + +  ++     E+       L   D++  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +               AS ++L+R L  A  +IA +L
Sbjct:  188 PSFRDRS-NQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPRTGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSKDWLHMDTVELDKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALQVLSQIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDDRVD--SVIAAAVRALRTLLVAPGDEELLDRTFSW--YHGASVFPLMPSQDDKEDEDEDEELETEKVKRKTPEEGSRPPPDLARHDVIKGLLA-TNLLPRLRYVL---EVTCPGPSVILDILAVLIRLARHSLESAMRVL-ECPRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARL 655

HSP 2 Score: 62.3882 bits (150), Expect = 3.071e-8
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESS---RTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ S  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  +P+  Y +P E  + L+  Y+  L    +      +LY + + H+N F+F Q  +SS   +TA  S       +QR  +L     E  R+  + H KL    +    E Y++LP  R Q L  L
Sbjct: 1220 LTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGTLRARWCPILYTVAVAHVNSFIFCQDPKSSDEVKTARRS------MLQRTWLLT---DEGLRQHLL-HYKLPNSSLPEGFELYSQLPRLRQQCLQTL 1397
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Match: sp|Q9BWH6|RPAP1_HUMAN (RNA polymerase II-associated protein 1 OS=Homo sapiens OX=9606 GN=RPAP1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.575e-15
Identity = 106/477 (22.22%), Postives = 202/477 (42.35%), Query Frame = 3 
Query:  183 NSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKN---LKIKRLKKETNEMKMLKKIKDICNEKP------EEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVL---------DKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT------------ASMLRLVRCLCQASESIAHKL 1514
            N   +   +       ++++G    + +A++     HE+N ++L   +  EI Q +  +     P  +  +++    + +  +  + E +      ++  E+P       E    +K+E     +     LP++P   +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  +++++   E        +V   L+D G +FL R+ +D+       +  A+  L A+L      +  + T +W  Y  A   P +  Q               KA+   S  E+S+   D L   D++  L+  T    RL ++L   +       +   + ++ R+ARHS+E A  V  +   L+ T++   L +  +               A+ ++L+R L  A  +IA +L
Sbjct:  192 NQGCQLPGSSHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALA----LPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAG-SVLSLLLDAGFLFLLRFSLDD--RVDGVIATAIRALRALLVAPGDEELLDSTFSW--YHGALTFPLMPSQEDKEDEDEDEECPAGKAKRK-SPEEESRPPPD-LARHDVIKGLLA-TSLLPRLRYVLEVTYPG--PAVVLDILAVLIRLARHSLESATRVL-ECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARL 639

HSP 2 Score: 59.6918 bits (143), Expect = 2.071e-7
Identity = 48/185 (25.95%), Postives = 85/185 (45.95%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ +  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  + +  Y  P E ++ L+  Y+  L    +      +LY + + H+N F+F+Q  +SS    E        +Q+  +LA    E  R+  + H KL    +    E Y++LP  R  +L +L
Sbjct: 1204 LTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQDPQSS---DEVKAARRSMLQKTWLLA---DEGLRQHLL-HYKLPNSTLPEGFELYSQLPPLRQHYLQRL 1381
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Match: sp|A0JN53|RPAP1_BOVIN (RNA polymerase II-associated protein 1 OS=Bos taurus OX=9913 GN=RPAP1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.115e-14
Identity = 107/463 (23.11%), Postives = 200/463 (43.20%), Query Frame = 3 
Query:  234 VISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKE---TNEMKMLKKIKDICNEK---PEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDE----VTLNWPDYRVAFAL---------PQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELT-------------ECTASMLRLVRCLCQASESIAHKL 1514
            +++G   +  +A++     HE+N ++L   +  EI Q +  +     P  +  +K+    R + E   T E +  +   ++  ++   P       +   ++ +   L+ LP++P   +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L  ++ ++   E      + +V   L+D G +FL R+ +D+       +   +      L        DE     T +W    + FAL             ++   +K K +   S  E ++   D L   DI+  L+  T+   RL ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +              C  +M +L+R L  AS +IA +L
Sbjct:  209 LVTGKGLKGQEAEQEAQTIHEENVARLQALAPEEILQEQQRLLAQLDPSLVAFLKSHSCTREQAEEKATREQRPGRPSAEVIGKEAIAPTSASVPRQENELEPETPALA-LPVTPQKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPDMDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVIGRAQAGEFGDRL-VGSVLHLLLDAGFLFLLRFSLDD------RVDGVIAAAVRALRALLVAPGDEELLDSTFSWYHGALMFALMPSQEDKEDEDEDEEPPAEKAKTK---SPEEGNRPPSD-LARHDIIKGLLA-TNLLPRLRYVL---EVTCPGPSVVLDILTVLIRLARHSLESATRVL-ECPRLVETVVREFLPTSWSPMGSGPTSSLHRVPCAPAM-KLLRVLASASRNIAARL 639

HSP 2 Score: 62.003 bits (149), Expect = 3.568e-8
Identity = 54/211 (25.59%), Postives = 92/211 (43.60%), Query Frame = 3 
Query: 2973 VARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPIC---IQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI 3596
            +ARL     L+    +     ++    L+ +  E + +VS  D L   L+L P   RF V  R  L+  +   LR + + L++  + +  Y  P E ++ L+  Y+  L    +      +LY + + H+N F+F+Q          SD     C   +Q+  +L     E  R+  + H KL    +    E Y +LP  R Q+L KL+I
Sbjct: 1184 LARLCQPEVLSNLNLDCPLPGLTSFPDLYANFLEHFEAVSFGDHLFGALILLPLQRRFSVTLRLALFGEHVGALRALGLPLTQLPVSLECYTAPPEDNLALLQLYFRALVTGALRPRWCPVLYAVAVAHVNSFIFSQD------PNNSDEIKAACRSMLQKTWLLT---DEGLRQHLL-HYKLPNSALPEGFELYPQLPPLRQQYLQKLRI 1384
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Match: sp|Q3T1I9|RPAP1_RAT (RNA polymerase II-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Rpap1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.951e-14
Identity = 113/470 (24.04%), Postives = 203/470 (43.19%), Query Frame = 3 
Query:  234 VISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPET---LEAIKNLKIKRLKKETNEMKMLKKIKDICNEKP------EEDETIEKME-IVDDKVKDLSF---LPISPNNNYINMNTLEMDKLEWMKYID--EKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDE----VTLNWPDYRVAFALPQLIDQ---------AVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGL-FIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELT-------------ECTASMLRLVRCLCQASESIAHKL 1514
            +I+G    +  A + +   HE+N ++L      EI + + ++     P     L A  + + +   K T E    +    +  E+P       E  T +K+E  ++DK++  +    LP++PN  +++M+T+E++KL W + +    + +  +    RF + G  L PD +          PT        LHHHGEE  R GY++ ELF L RS    QR+LA+  L +++ ++   E      + +V + L+D G +FL R+ +D+       +   +      L        DE     T +W  Y  A   P +              L K+K     +  E S+   D L   D++  L+  T+   R  ++L    +     ++ L  + ++ R+ARHS+E A  V  +   L+ T++   L +  +              C A+M +L+R L  A  +IA +L
Sbjct:  209 LITGKGLRSQAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRAHNHTREQTETKATKEQNPERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLEPDVDL---------PTHL-----GLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRL-VGSVLRLLLDAGFLFLLRFSLDD------RIDSVIAAAVRALRALLVAPGDEELLDSTFSW--YHGASVFPMMPSHDDKEDEDEDEELTKEKVNRK-TPEEGSRPPPD-LARHDVIKGLLA-TNLLPRFRYVL---EVTCPGPSVVLDILAVLIRLARHSLESAMRVL-ECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAM-KLLRVLASAGRNIAARL 647

HSP 2 Score: 62.3882 bits (150), Expect = 2.589e-8
Identity = 50/185 (27.03%), Postives = 83/185 (44.86%), Query Frame = 3 
Query: 3036 ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++    L+ S  + + +VS  D L   LVL P   RF V  R  L+  +   LR + + L++  +P+  Y +P E  + L+  Y+  L    +      +LY + + H+N F+F Q  +SS    E        +Q+  +LA  D     +  + H KL    +    E Y +LP  R Q+L  L
Sbjct: 1211 LTSFPDLYASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECYTEPAEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVNSFVFCQDPKSS---DEVKAARRSMLQKVWLLADKD----LRQHLLHYKLPNSSLPEGFELYPQLPRLRQQYLQTL 1388
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Match: sp|Q04418|RBA50_YEAST (RNA polymerase II-associated protein RBA50 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RBA50 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.853e-7
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 3 
Query:  588 EMDKLEWMKYIDEKAEKS----KLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNK 887
            E+DKL+WM+ + +K +K+     +   RF  +G  +PP  + D                  LHHH + P   GYTI EL  LARS F  QR +A+ TL  +L K
Sbjct:  264 EVDKLKWMQPVQQKTDKNYIIEDVSECRFDFNGDLVPPTRQIDST------------IHSGLHHHSDSPELAGYTIVELEHLARSTFPSQRCIAIQTLGRILYK 355
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Match: A0A0L8IF79 (Laminin IV type B domain-containing protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22007683mg PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.407e-27
Identity = 131/488 (26.84%), Postives = 219/488 (44.88%), Query Frame = 3 
Query:  186 SSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDE-KAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLN--KSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAND-------YEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIQLLTV 1616
            +S KCN      +  S+++G      +A+K     H +N ++L G + +EI   R ++     P  +  +K  K + L  ET    +  K          +D    ++++V    KD   LP+ P++  ++M+ +E +KL WMK +    A  +K K  RF   G  +P D E               P    LHHHGEE  R GYT+ ELF L RS    QR+ A+ TL  ++   KS   E         +  S+++ GIVFL RW +D+  +    L  A+  L A+L+N    ++ + T  W   R   A  Q+ ++       A+  L F E  ++ D   +  D+V  LV + +   RL FLL     ++   +I   + I+ RI+ HS + A +V          +++LL ++       +      S L+L++ LCQA  S+A  +    +++  L   I    +  + S+  A +L TV
Sbjct:  133 ASTKCNLESSYTSHQSIVTGFGLSASNAEKEAKAIHAENVNKLSGMTEKEILMERQKLLSMLDPSLINFLKTRKSENLDSETTSTSIENK----------DDSDKSELKLVHKLSKDE--LPVKPDSQLVHMDNVEYEKLAWMKDLPPVNARSTKGKPARFDFQGFIIPEDAEI--------------PVDLGLHHHGEEAERAGYTLDELFHLCRSLNSQQRTFALKTLGCIITNAKSGMFEESIE---GAIIPSVINAGIVFLLRWALDD--KITTVLISAVFCLHALLTNSADENSLQFTFCWYRGR-EVAAHQVAEET---SNAAKEKLDFLETVEVTDADEVQADVVRALVNRMNLLPRLRFLL--EVWDISPESIKCILEILSRISHHSKQDAYNVYKCPRLMEFIFKELLPSVCSTD--DKTVSSIISTLKLIKVLCQAGRSMATDIVTKYKLMDKLLLYIAPQPSEMNLSENVADELQTV 581

HSP 2 Score: 74.7146 bits (182), Expect = 1.285e-9
Identity = 79/307 (25.73%), Postives = 125/307 (40.72%), Query Frame = 3 
Query: 2679 FRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQ--SIVACLAFISFLEAG--NIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFAN--ISQIDISK-ISGLFD------SLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELP 3560
            F  +E      +  +    +P DW   P   Q   + +  E   +    +Q   I   L FI  LE    +I++     +   + +C  L +N+      +PV R  L   +  Y     +  ++  + I GL+          +QY SVS  D +  + +L P      V  R+ +W+ N   LR + V + + +IPI  YL PEE + EL+      L  + + E    +LY I +HH NRFMF Q         E + +         VL  S+   Q K  + H K+Y    N  +E Y  LP
Sbjct: 1003 FAYVEEIHSFLVGKLGETLLPRDWIFMPLVHQYSLSNSLPENEHEQCSPQQINKITHALKFIYLLETQRPSIMDGLSASLKISRLMCVYLTDNNI---FLEPVVRSYLAGLMRIYSKENILDSMNFDESIPGLYSFYDFFIEFLKQYTSVSFGDFVFGSYLLLPLQQMHNVFLRKAIWEENSTVLRTLRVSIQDHLIPIHRYLVPEETNPELLKLLILALLRESVSEKWCPVLYLITVHHCNRFMFRQD------GYEDNLRQ---FMFSHVLKCSNS--QLKEHLLHYKMYNATSNHHIELYQNLP 1295
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Match: A0A437C3X8 (Uncharacterized protein OS=Oryzias javanicus OX=123683 GN=OJAV_G00214540 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.063e-27
Identity = 141/557 (25.31%), Postives = 245/557 (43.99%), Query Frame = 3 
Query:  294 EKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLK-KETNEMKMLKKIKD--------ICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSK------LQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT------------ASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIQLLT---VFIAREIHAGPIGTIIPSIVDQLSNQLDSE---CYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQCPLAPP 1859
            E  ++L   S  EI + + ++     P  +E +++ K + +  KETNE +   +            C E   E++      I + +      LP+ P   +I+M+ LE +KLEWMK +    +K   K++  RF  +G  +PP              TE  P    LHHHGEEP R GY++ ELF L+RS  + QRSLA+STL N+L+K+   E+        VT +L+D G+VFL R+ +D+  E    +  A+  L A+L      +  + T +W  Y+   + P L      ++++      F +++       + D  +  +D+V  L+ K     RL ++L    +    R +   ++I+ R+ARHS+  A  V N    L+ T++   L +  +  +            AS ++L+R L  +   I  +L     + + L  L+            EA+++ T    F A     G    +   +   L N L S       + A+    +  L+  +S ++ V+ T     E    V+ ++  +CP  PP
Sbjct:  225 ENQAKLRAMSQSEIIEEQKKLLSQLDPRLVEFVRSRKDQSVPPKETNEKEDTPEKAGGHSSSGPAFCCEGSMEEKKSPSAVITEAE------LPVKPQKEWIHMDKLEPEKLEWMKDLPPPRKKGTEKAMQARFDFAGTLIPP--------------TEDLPTHLGLHHHGEEPERAGYSLQELFLLSRSQLIQQRSLALSTLANILSKARAGEYASALK-GAVTSTLLDAGLVFLLRFALDDGVE--AVMSSAVHALRALLVCSEDEECMDSTFSW--YQGLASFPLLPSSQENEEEEDEGVEGFMKETAKEKEENMSDFDVTQQDVVKGLL-KMKLLPRLRYIL--EVMRPSPRVVQDVLQILTRVARHSLSSATQVLN-CPRLMETVMSEFLPTSWSASSSPNPQSIYGVPVASAMKLLRVLATSGRHICARLLNSLGVKERLSRLLSAEPAELVLEPSEAVRITTEAYRFWAVAAGYGQACQLYIDLYSALLNSLQSGHRLAPPSDALRPLQLQRLSALLSLLTQVTHTAGCHQELQAGVLSAQGEECPPPPP 752
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Match: A0A1B6CGL5 (Uncharacterized protein OS=Clastoptera arizonana OX=38151 GN=g.18072 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.733e-26
Identity = 242/1096 (22.08%), Postives = 448/1096 (40.88%), Query Frame = 3 
Query:  222 NASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYIN----MNTLEMDKLEWMKYIDEKAEKSKL--KSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQK---ARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKI-EAIQLLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSECYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQCPLAPPSHHPIMGSMLHLIN---NFLSHQFTRHDLSTHSVATNVWKNFISVFLASPLLGQLLQKLPDSSVLGYEHRNSGHEFI-CLDLVNLLHNSTRLAVKTRNPKFIDFQPSFINLDPSFSVLSGICHTISLIFSTHISIRFLSDFPLFPNSNSFPHLMRFINFVAETPID-KVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHLSSIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGS----------------MKIPIDQSILELLLEFLPNIRTLYESF--VPGFR--QMENPKPGFIQPINSR--FVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGI-----KRLCHLLVNNDWIDNL--WQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFM 3374
            + S VI+G  AE+I         H +N ++L   +++EI + RN++     P     I  LK K+   + N  ++   I D  N KP+      +M++ +    +L     +P  N +N    M+ +E +KL+WM+ +            + RF   G  LP           ++ P       D L+HHGEEP R GYT+ EL  L+RS  L QR  +++TL N+  K+S  ++ Y    P + Q L++  I  L R+ +D++      + Q +      +SN        + +N+ D      L +L+  A   KQ     +L L   +  +L+D  L+  D++   + +T    R S++L KN       TI L ++ + RI+RHS+E A S+AN     L+  +   L  E     +  L+L R +   S ++A +L  +  ++  +   I   +  +  S + E+     V +   +      T  P I   L   ++    +T+   H   T+L   +S++S++    Y+     +  ++   L+          I  +M  LI    N  +   ++ + ++  V   V K     FL SP        L  SS L +E+ N+  E + CL +V               P   D          +F +++G+   +  +    +S +F+S             +  ++  + +  I+ K  +  A   I          ++ ++++  Q V M  D   S  I++ A+ +LP +      +L  DL N  IFN    G+                     + ++  +L E + N+  + + +  V G     +  P P     +      +P DW   P  +     + NSE +      E++ +  L  + ++    ++  ++V  T I     +  C  L  ND   ++  W     ++L  + +Q   +     ++     F  L E + +VS  + +    +L P   R   KYR+ +W      LR++   L + IIP+  +L P E DI+++  Y   L    + E    +LY + +HH+  F+
Sbjct:   42 DKSYVITGQDAESI---------HNENVTKLSALTSKEIEEERNKLLLEMDPAL---INFLKTKKANTKCNAQEV---IPDETN-KPD----TYRMDLKNSTDINLRGCANNPTMNLVNKWPHMDIVEPEKLKWMEELPPPKPPPAGVPYNARFSFDGTLLP---------YIEEIP------QDGLYHHGEEPERPGYTLQELLQLSRSSVLQQRITSINTLANIFLKAS--DYTYCLEKPLLPQ-LLESEIFLLLRFSLDDS------IRQVVVASIIAISN--------LLVNYADES---CLERLLGVATGLKQPLFYVKLDLKTEDIVELKDPQLLKIDVIKGAL-RTQILPRFSYIL-KNLRIEPSETISL-LKCLVRISRHSLESALSIANC--PGLLPAVRNLLNKENEFNFSEALKLFRVIASHSHTLAEQLVNNYELLDPIQRYISGEQREELMSLVLESFYTWQVLLTYNLTTEMFLTFSPVIQRLLLAHVEHTSIFTNNGDHEHATAL---ISTLSVILHADYNRGRQFLPTLELCALKWLTQISFASNITWTMCKLIGATLNCAAIVASKGEYNSKDVMIKVLK-----FLDSPNFMHCSNNLRKSSWLLFEYENTKVENLPCLGVV--------------PPTVYDVS--------TFPLVAGLVSYLRTVADMKLSEKFISS----------TEIHNYLQDIIKANIEVKAQHWYARQEIY---------VLFNIIHIHQHV-MSFDE--SSYIHEVALVLLPTIQND-DRYLLPDLFNTFIFNKKYFGTDISTFVSEFTNLNLANNSAVQNANVKHMLSEAIKNLDAISDCYNSVLGVNNFNLTFPPPSLTATVQGEESALPTDWQFIPLLQ-----LYNSEGS-----GEKAGLIALTSLQWILILEMLRPEIVSATSISARYCRVACTFLAGNDLFRDVTTWLETILIVLLKYNSQLDFDQPIPGLTSFYDFFRQLMEHFSAVSYGNPVFGQYLLIPLQQRHNPKYRKIIWSEQAGILRILSTSLDQLIIPLENFLDPCETDIDILSTYLGSLAKGQVREKWCPVLYKVAVHHVAVFI 1014
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Match: A0A3P9M437 (RNA polymerase II associated protein 1 OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.012e-25
Identity = 109/401 (27.18%), Postives = 188/401 (46.88%), Query Frame = 3 
Query:  234 VISGMRAENIDAD-KLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKD----------ICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFAL---PQLIDQAVLDKQKARLALSFSEQSKLQDDI-LMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAN 1385
            ++SG     +D   + L    E  ++L   S  EI + + ++     P  +E +++ K + ++ E    K   + K            C    EE+E      I+ +       LP+ P   +++M+ LE +KLEWMK +    +K   K++  RF  +G  +PP              TE  P    LHHHGEEP R GY++ ELF L+RS  + QRSLA++TL N+L+K+   E+       TVT +L+D G++FL R+ +D+  E    +  A+  L A+L +    +  + T +W     +F L    Q  ++   +     +  +  E+ + + D  +  +D+V  L+ K     RL ++L    +    R +   ++I+ R+ARHS+  A  V N
Sbjct:  213 LVSGQGLGVLDGSTETLRIHMENQAKLRVMSQSEILEEQKKLLSQLDPRLVEFVRSQKAQSVQSEETNKKEDAREKAGGPPSSVPGFYCERSMEEEEPQPPSAIITEVE-----LPVKPQKEWVHMDKLEPEKLEWMKDLPPPRKKGTEKAMQARFDFAGTLMPP--------------TEDLPTHLGLHHHGEEPERAGYSLQELFLLSRSQLIQQRSLALNTLANILSKARAGEYASALK-GTVTSTLLDAGVLFLLRFALDDGVEGV--MSAAVHALKALLVSSEDEECMDSTFSWYLGLASFPLLPSSQEDEEEEDEGVDGCMKQTAKEKEEQKSDFDVTQQDVVKGLL-KMKLLPRLRYIL--EVMRPSPRVVQDVLQILTRVARHSLSSATEVLN 588

HSP 2 Score: 65.855 bits (159), Expect = 7.197e-7
Identity = 92/354 (25.99%), Postives = 146/354 (41.24%), Query Frame = 3 
Query: 2481 YKAAIRILPHLGPCLYHHLGADLLNKIIFNPAII-------------GSMKI---------PIDQSILELLLEF---LPNIRTLY-------ESFVPGFRQM---ENP--KPGFIQPINSRFVPIDWFDYPFTK---QCKKNVNNSEETIDLVLSE-QSIVACLAFISFLEAGNIVNHKVVP-ITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQID----------ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            ++ A+ +LP L P    +L  +LL+ +IFN   I             G +K+         P  Q++  LL E    LP+IR  +       E  V   R+     NP      +  +    +P DW   P  K   Q   +        +L     Q+ V CL ++  LE     + KVVP +  + RL C  L ++D    L +PV +L  T  L +     S++D          ++    L+ +L  QY SVS  D L    VL P   R+    R  ++  +   LR + V L +  IPI  +  P E  + L+  Y+  L    +  S   +LY + + H+N F+F+Q
Sbjct:  983 HQVALVLLPWLLPG-SEYLAHELLSTVIFNKDFISEGHSGGPEAVELGELKLHDDVRLHTTPSLQTVGALLREACVQLPSIRGCFLTHLAYLEPSVIASRKALLGRNPWISSHLLPELTGPTLPSDWPFLPLIKLYEQTGVSGGGGLAVEELPAGALQAAVHCLQWLLLLEVWREESLKVVPPVAKLARLSCVFLCSSDLF--LERPVQKL--TWGLFRLLTRASRLDSLDLDVPPPGLASFQDLYSALLAQYESVSFGDQLFGCWVLLPLQRRYSASMRLAVFGEHVGMLRSLGVTLEQLSIPIERFTSPPEDSLPLLRLYFRSLVTGSLKLSWCPVLYVVALSHVNSFIFSQ 1331
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Match: A0A3P9KNS2 (RNA polymerase II associated protein 1 OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.106e-25
Identity = 109/401 (27.18%), Postives = 188/401 (46.88%), Query Frame = 3 
Query:  234 VISGMRAENIDAD-KLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKD----------ICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFAL---PQLIDQAVLDKQKARLALSFSEQSKLQDDI-LMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAN 1385
            ++SG     +D   + L    E  ++L   S  EI + + ++     P  +E +++ K + ++ E    K   + K            C    EE+E      I+ +       LP+ P   +++M+ LE +KLEWMK +    +K   K++  RF  +G  +PP              TE  P    LHHHGEEP R GY++ ELF L+RS  + QRSLA++TL N+L+K+   E+       TVT +L+D G++FL R+ +D+  E    +  A+  L A+L +    +  + T +W     +F L    Q  ++   +     +  +  E+ + + D  +  +D+V  L+ K     RL ++L    +    R +   ++I+ R+ARHS+  A  V N
Sbjct:  213 LVSGQGLGVLDGSTETLRIHMENQAKLRVMSQSEILEEQKKLLSQLDPRLVEFVRSQKAQSVQSEETNKKEDAREKAGGPPSSVPGFYCERSMEEEEPQPPSAIITEVE-----LPVKPQKEWVHMDKLEPEKLEWMKDLPPPRKKGTEKAMQARFDFAGTLMPP--------------TEDLPTHLGLHHHGEEPERAGYSLQELFLLSRSQLIQQRSLALNTLANILSKARAGEYASALK-GTVTSTLLDAGVLFLLRFALDDGVEGV--MSAAVHALKALLVSSEDEECMDSTFSWYLGLASFPLLPSSQEDEEEEDEGVDGCMKQTAKEKEEQKSDFDVTQQDVVKGLL-KMKLLPRLRYIL--EVMRPSPRVVQDVLQILTRVARHSLSSATEVLN 588

HSP 2 Score: 65.855 bits (159), Expect = 8.094e-7
Identity = 105/425 (24.71%), Postives = 172/425 (40.47%), Query Frame = 3 
Query: 2481 YKAAIRILPHLGPCLYHHLGADLLNKIIFNPAII-------------GSMKI---------PIDQSILELLLEF---LPNIRTLY-------ESFVPGFRQM---ENP--KPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNS------EETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVP-ITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQID----------ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++ A+ +LP L P    +L  +LL+ +IFN   I             G +K+         P  Q++  LL E    LP+IR  +       E  V   R+     NP      +  +    +P DW   P  K  ++   +       EE     L  Q+ V CL ++  LE     + KVVP +  + RL C  L ++D    L +PV +L  T  L +     S++D          ++    L+ +L  QY SVS  D L    VL P   R+    R  ++  +   LR + V L +  IPI  +  P E  + L+  Y+  L    +  S   +LY + + H+N F+F+Q   +              I RK +  ++D   +    +   +L +       + YAELP  R + L+ +
Sbjct:  983 HQVALVLLPWLLPG-SEYLAHELLSTVIFNKDFISEGHSGGPEAVELGELKLHDDVRLHTTPSLQTVGALLREACVQLPSIRGCFLTHLAYLEPSVIASRKALLGRNPWISSHLLPELTGPTLPSDWPFLPLIKLYEQTGVSGGGGLAVEELPAGAL--QAAVHCLQWLLLLEVWREESLKVVPPVAKLARLSCVFLCSSDLF--LERPVQKL--TWGLFRLLTRASRLDSLDLDVPPPGLASFQDLYSALLAQYESVSFGDQLFGCWVLLPLQRRYSASMRLAVFGEHVGMLRSLGVTLEQLSIPIERFTSPPEDSLPLLRLYFRSLVTGSLKLSWCPVLYVVALSHVNSFIFSQDAAAQEVEAARHS-----ILRK-IYYLTDEVLRNHLLL--FRLPQPHTQLGFDTYAELPPIRAKRLESV 1392
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Cavefish
Match: rpap1 (RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1])

HSP 1 Score: 100.908 bits (250), Expect = 5.703e-21
Identity = 109/431 (25.29%), Postives = 194/431 (45.01%), Query Frame = 3 
Query:  138 NLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSF-------------LPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNL-PTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFAL---PQLIDQAVLDKQKARLALSFSEQSKLQDDILMAE-DIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVE---RIARHSV 1361
            N +N+     P R  + S +  S       S ++SG       A + L    E  ++L   S  EI   + ++     P  ++ +++ K ++    +   ++    + I   KP E E  E  ++V D  ++                LP+ P   +++M+ LE +KLEW + +    ++S  +++  RF  SG+ +PP              T+  P    LHHHGEEP   GY++ ELF L+RS    QR+LA++TL  +L+K+     VY   L  +V  SL+D G++FL R+ +D+  E    +  A+  L A+L + +  +  +    W     AF L    Q  ++   +     + L+  E+   + D  +A  D++  L+ K    +RL ++     L +     G+ + ++E   RIARHS 
Sbjct:  184 NSKNDPKIIIPQR--SGSTRDASGAAAAPGSLLVSGQGLGPDSAAETLRIHQENQARLENMSQSEIVDEQKKLLAQLDPRLVDFVRSRKSQK-ASSSGPSRLQSPDQLITKGKPAEPEP-ESQDVVMDADEEEGETQPEAQPPIREEDLPVRPQKEWVHMDKLEPEKLEWTRDLPAPRKQSTKQAMQARFDFSGSVIPP--------------TQDLPTHLGLHHHGEEPELAGYSLQELFLLSRSQLTQQRTLALNTLAQILSKAR--AGVYCNTLKGSVLSSLLDAGLIFLLRFSLDDGVE--SVMSAAVHALRALLVSPDDEECLDRMFPWLMGMAAFPLLPSGQEEEEEDDEGLDESMKLTAKEKELRKTDHDVARVDVIKGLL-KMQVLQRLRYI-----LEVVRPAPGVVLDVLEVLIRIARHSA 586

HSP 2 Score: 60.4622 bits (145), Expect = 1.132e-8
Identity = 68/284 (23.94%), Postives = 110/284 (38.73%), Query Frame = 3 
Query: 2613 ILELLLEFLPNIRTLYESFV----PGFRQMENPKPG--------FIQPINSRFVPIDWFDYPF------TKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEA--GNIVNHKVVPITGIKRL-CHLLVNNDWI------DNLWQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            +L L L  LP+IR  Y +F+    P      +   G         +  ++   +P DW   P       T  C+             L  Q++V CL ++  +E+  G  ++  V P   + RL C  L + D        D  W    RL     L           ++    L+ +L  QY +VS  D L    VL P   R+    R  ++  +   LR + V L +   P+  +  P E  + L+  Y+  L    +  S   +LY + + HLN F+F+Q
Sbjct: 1036 LLRLSLSHLPSIRGCYLTFLSHLEPAVLSSRDRHLGRTPWLTSQLLPELSGPSLPSDWPFLPLISLYERTGVCEGRGQQVGSVPAGAL--QAVVQCLQWLLLVESWRGRALS-AVPPGAKLARLSCVFLCSTDLFLERPVQDLTWALFRRLTGPTCLQDLDLGTPPPGLASFHDLYSALLVQYEAVSFGDPLFGCFVLLPLQRRYSATMRLAVFGEHVGILRSLGVSLQQLPFPLENFTSPPEDSLPLLRLYFRALVTGALRRSWCPVLYVVAVAHLNAFIFSQ 1316
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Sea Lamprey
Match: rpap1 (RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1])

HSP 1 Score: 102.449 bits (254), Expect = 3.895e-22
Identity = 111/490 (22.65%), Postives = 208/490 (42.45%), Query Frame = 3 
Query:  189 SNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKN-SQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPE-----------EDETIEKMEIV----------DDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKS----IRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQS--------------KLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECT-----------ASMLRLVRCLCQASESIA 1505
            + K      L+  + +  G      +A+K+    H++N  +L   S  EIA+ R+ +     P+ +  +++   +R     ++ K ++ ++   N K             E  T E  E +          +DK   L  LPI P   +++M+ +E +K+EWM+ + + + K +        RF   G  +PPD +               P    LHHHG EP R GY++ ELF L RS  + QR+LA+  L  +L ++   E      + ++ ++L+D G+VFL R+ +D++ E    +  A+  L A+LS     +  +   +W     +F L    ++   D  +   +   ++ +              K  D ++   DI+  L+ KT    RL +++    +      +   + I+ RIARHS   A  +  +   L+ +L+   L +                 A+ ++L R LCQA  +++
Sbjct:  204 AGKRGGGRGLVTGTGLAVG--CAEAEAEKI----HKENVERLKAMSREEIAEERSRLLAQIDPKLVAFLRSTSARRDSTGRHQAKRVRFVEPGDNVKAARMQVAPADTITEKGTGESSESLVTDSDMDTEEEDKTSTLDGLPIKPQKEWMHMDKVESEKMEWMRELPKPSPKRRKTKQEMQARFDFHGQLVPPDSDV--------------PSYLGLHHHGAEPERAGYSLEELFHLCRSQVIQQRTLALQLLARILMRARQGEFAGELRV-SLLRTLMDAGLVFLLRYALDDSAE--GVIAAAVLSLQALLSCPAEEEALDQVFSWYQGSSSFPLAPTEEEEDADGDEDEDSDGEAKSAEEGEESVKRKAKDEKKPDPLVARHDIIKGLL-KTGMLRRLRYIV--EVVRPVPAVVLAVLHILTRIARHSAHAASQIV-ECPRLVESLVSEFLPTAWQPTGGPVGVVYGLPLAAAMKLARVLCQAGRNMS 666

HSP 2 Score: 73.559 bits (179), Expect = 2.312e-13
Identity = 97/449 (21.60%), Postives = 175/449 (38.98%), Query Frame = 3 
Query: 2403 TQLIISVVNACQWVNMPIDHLSSIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSMKIPIDQSI-LELLLEF-----------------------------LPNIRTLYESFVPGFRQ--MENPKPGFIQ-----------PINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHL----LVNNDWIDNLWQPVARLMLTNFLTQYFANISQIDISKISG----------LFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYK---HFVNSTVEFYAELPDKR 3569
             ++ +S   A + V  P+ H+ ++A+     R+LP        HL   LL+ I+FNP      ++   ++  LE +L                               L  IR  Y + + G  +  +E  +  ++            P+     P DW   P  +  + + + S   +D      + VA L ++  LE     +  +  I+   +LC L    L ++  +     P  R  L   L  Y      +D  ++ G          L+  L EQ+ + S  D+L    VL P   RF V+ +  L+  +   LR + V + +  + +  Y +P E  + L+  Y+ +L    +  +   +LY + +HH+N F+F+Q         E    D + ++++M+  I+    Q K    HL LYK      N   + Y +LP  R
Sbjct: 1001 ARMAVSFSEAARRV-APLCHMVALALVG---RLLPG-----SEHLAQQLLSGILFNPDFTPEGRVGGPEAADLEAMLSLKEDRGPEPLGSQGGEVQGGGELLTAAWKDLAGIRACYLALLLGGEEKALERSQARYLGQTKHIASLLLPPMQGPLYPADWAFLPLVRLYQASADASAVPVD---PRAASVAALRWLLLLE--TWRHGALAGISAAAKLCRLTCVFLADDGSL--FLDPPVRAGLAALLGLY-CRPRALDALRLDGPVAGVPAFYDLYVELLEQFEAASFGDALFGAFVLLPLQRRFDVRLKLVLFGEHEGALRSLGVPIKQFPVGLGRYTEPAETHVGLLRLYFRMLVTGSLRTAWCPVLYAVALHHVNAFIFSQ---------EHGDHDILKMKKRMLRQIN--ALQDKVLRSHLLLYKLPNASDNLGFDLYEQLPPIR 1421
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Yeast
Match: RBA50 (Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1 [Source:SGD;Acc:S000002935])

HSP 1 Score: 58.9214 bits (141), Expect = 2.668e-9
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 3 
Query:  588 EMDKLEWMKYIDEKAEKS----KLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNK 887
            E+DKL+WM+ + +K +K+     +   RF  +G  +PP  + D                  LHHH + P   GYTI EL  LARS F  QR +A+ TL  +L K
Sbjct:  264 EVDKLKWMQPVQQKTDKNYIIEDVSECRFDFNGDLVPPTRQIDST------------IHSGLHHHSDSPELAGYTIVELEHLARSTFPSQRCIAIQTLGRILYK 355
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Nematostella
Match: EDO48627 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJ67])

HSP 1 Score: 112.464 bits (280), Expect = 5.309e-25
Identity = 121/458 (26.42%), Postives = 200/458 (43.67%), Query Frame = 3 
Query:  213 KLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEE-------------DETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKA--EKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFD-PFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVL-SNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIV 1535
            KL+    +  G    + D++ +    HE   +L G S  EI   R  +  +  P  L  +++       K+T E K+ + I +     PE+             +  +E++E V + V+  +         +++M+ LE DKLEWMK     +  ++ +    RF   G+            L  K   E D P +  LHHHG++P   GYT+ ELF L+RS FL QR LA+ TL  ++ K +  E       P +  +L+D G++FL RW +D++      +  A+  L AVL    + V  D+V     ++     +P L     ++ + AR      E   L D  L+ +D++  LV +     RL ++L     N    TI     I+ RIARHS E A  VA     + +TL +      L    A  ++++R +C A    A  +     ++
Sbjct:    2 KLVTGEGLPRGQAQTSQDSEAV-RIHHENVERLAGVSHEEIIAERERLMTSLDPALLAFLQSRT-----KQTTEPKLNQAIPEPDRSGPEKHVHFANDVSVVSVEGGVEQLESVRELVQQTA------KQRWVHMDGLEPDKLEWMKDCPPPSAFDQKQGNQARFTFDGS------------LVTK---EADLPVSLGLHHHGDDPGAAGYTLEELFILSRSSFLQQRVLALQTLSRIIAKENAGEFRDTLRSPPL-PTLLDAGVLFLLRWALDDSTAAV--MAAAIHGLAAVLVYPADEVSADQVC----EWYCGLEVPALTP---VESETAR---DKDEDRPLTDAELLKQDVIKGLV-RMKLLPRLRYIL--EMCNPQPDTIICIFDILTRIARHSAESAYKVAMCPRLMEVTLGEFLTVDGLMLPNA--MKMIRVVCTAGRHTAATMVSSHDVM 414

HSP 2 Score: 61.2326 bits (147), Expect = 2.398e-9
Identity = 60/239 (25.10%), Postives = 103/239 (43.10%), Query Frame = 3 
Query: 2724 NSRFVPIDWFDYPFTKQCKKNVNNSEE--TIDLV-LSEQSIVACLAFISFLEAGNIVNHKVVPITGI-------KRLCHLLVNNDWIDNLWQPVARLM--LTNFLTQYFANISQIDISK-ISGL------FDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            +   VP+DW   P        +N+ ++   +D V +S  ++V C    +      +   + V +TG+       + +C  +   D    L   V R M  L +  TQ    I+Q+D S+ + GL      + SL   + +VS  DSL    V+ P       +YR  LW+ +   LR + +   +  +P+  +L P E +  L+  Y   L N  +      L Y + +HHLN F+F +
Sbjct:  860 HGALVPVDWMFTPIVDLHNHIINSEQKGRALDEVPVSMVTLVKC----TLQLLLLLEEKRPVSLTGVTMVARVARLMCIFMTGFDLF--LHTTVHRYMSCLLHIYTQSH-RIAQLDFSQPVPGLSSFYDLYSSLLTHFSAVSYGDSLFGKFVVLPLTQAQNSRYRLLLWEEHVGSLRSLSLSPCQVPVPLENFLYPIEQEEALLKLYLRALANQVVRPQWCPLFYLLAVHHLNAFIFQR 1091
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Medaka
Match: rpap1 (RNA polymerase II associated protein 1 [Source:NCBI gene;Acc:101156541])

HSP 1 Score: 127.102 bits (318), Expect = 4.692e-29
Identity = 112/401 (27.93%), Postives = 187/401 (46.63%), Query Frame = 3 
Query:  234 VISGMRAENIDAD-KLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMK--MLKKIKD--------ICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFA-LPQLIDQAVLDKQKARLALSFSEQSKLQ---DDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAN 1385
            ++SG     +D   + L    E  ++L   S  EI + + ++     P  +E +++ K + ++ E    K   L+K            C    EE+E      I+ +       LP+ P   +++M+ LE +KLEWMK +    +K   K++  RF  +G  +PP              TE  P    LHHHGEEP R GY++ ELF L+RS  + QRSLA++TL N+L+K+   E+       TVT +L+D G++FL R+ +D+  E    +  A+  L A+L +    +  + T +W     +F  LP   D    D +     +  + + K +   D  +  +D+V  L+ K     RL ++L    +    R     ++I+ R+ARHS+  A  V N
Sbjct:  213 LVSGQGLGVLDGSTETLRIHMENQAKLRVMSQSEILEEQKKLLSQLDPRLVEFVRSHKAQSVQSEETNKKEDALEKAGGPPSSGPVFYCERSMEEEEPQPPSAIITEVE-----LPVKPQKEWVHMDKLEPEKLEWMKDLPPPRKKGTEKAMQARFDFAGTLMPP--------------TEDLPTHLGLHHHGEEPERAGYSLQELFLLSRSQLIQQRSLALNTLANILSKARAGEYASALR-GTVTSTLLDAGVLFLLRFALDDGVEGV--MSAAVHALKALLVSSEDEECMDSTFSWYLGLASFPLLPSSQDDEEEDYEGVDGCMKQTAKEKEEQKSDFDVTQQDVVKGLL-KMKLLPRLRYIL--EVMRPSPRVAQDVLQILTRVARHSLSSATEVLN 588

HSP 2 Score: 67.0106 bits (162), Expect = 1.172e-10
Identity = 105/425 (24.71%), Postives = 173/425 (40.71%), Query Frame = 3 
Query: 2481 YKAAIRILPHLGPCLYHHLGADLLNKIIFNPAII-------------GSMKI---------PIDQSILELLLEF---LPNIRTLY-------ESFVPGFRQM---ENP--KPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNS------EETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVP-ITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQID----------ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKL 3590
            ++ A+ +LP L P    +L  +LL+ +IFN   I             G +K+         P  Q++  LL E    LP+IR  +       E  V   R+     NP      +  +    +P DW   P  K  ++   +       EE     L  Q+ V CL ++  LE     + KVVP +  + RL C  L ++D    L +PV +L  T  L +     S++D          ++    L+ +L  QY SVS  D L    VL P   R+    R  ++  +   LR + V L +  IPI ++  P E  + L+  Y+  L    +  S   +LY + + H+N F+F+Q   +              I RK +  ++D   +    +   +L +       + YAELP  R + L+ +
Sbjct:  983 HQVALVLLPWLLPG-SEYLAHELLSTVIFNKDFISEGHSGGPEAVELGELKLHDDVRLHPSPSLQTVGALLREACVQLPSIRGCFLTHLAYLEPSVIASRKALLGRNPWISSHLLPEVTGPTLPSDWPFLPLIKLYEQTGVSGGGGLAVEELPAGAL--QAAVHCLQWLLLLEVWREESLKVVPPVAKLARLSCVFLCSSDLF--LERPVQKL--TWGLFRLLTRASRLDSLDLDVPPPGLASFQDLYSALLAQYESVSFGDQLFGCWVLLPLQRRYSASLRLAVFGEHVGMLRSLGVTLEQLSIPIEQFTSPPEDSLPLLRLYFRSLVTGSLKLSWCPVLYVVALSHVNSFIFSQDAAAQEVEAARHS-----ILRK-IYYLTDEVLRNHLLL--FRLPQPHTQLGFDTYAELPPIRAKRLESV 1392
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Medaka
Match: rpap1 (RNA polymerase II associated protein 1 [Source:NCBI gene;Acc:101156541])

HSP 1 Score: 127.102 bits (318), Expect = 5.264e-29
Identity = 112/401 (27.93%), Postives = 187/401 (46.63%), Query Frame = 3 
Query:  234 VISGMRAENIDAD-KLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMK--MLKKIKD--------ICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSI--RFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFA-LPQLIDQAVLDKQKARLALSFSEQSKLQ---DDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVAN 1385
            ++SG     +D   + L    E  ++L   S  EI + + ++     P  +E +++ K + ++ E    K   L+K            C    EE+E      I+ +       LP+ P   +++M+ LE +KLEWMK +    +K   K++  RF  +G  +PP              TE  P    LHHHGEEP R GY++ ELF L+RS  + QRSLA++TL N+L+K+   E+       TVT +L+D G++FL R+ +D+  E    +  A+  L A+L +    +  + T +W     +F  LP   D    D +     +  + + K +   D  +  +D+V  L+ K     RL ++L    +    R     ++I+ R+ARHS+  A  V N
Sbjct:  213 LVSGQGLGVLDGSTETLRIHMENQAKLRVMSQSEILEEQKKLLSQLDPRLVEFVRSHKAQSVQSEETNKKEDALEKAGGPPSSGPVFYCERSMEEEEPQPPSAIITEVE-----LPVKPQKEWVHMDKLEPEKLEWMKDLPPPRKKGTEKAMQARFDFAGTLMPP--------------TEDLPTHLGLHHHGEEPERAGYSLQELFLLSRSQLIQQRSLALNTLANILSKARAGEYASALR-GTVTSTLLDAGVLFLLRFALDDGVEGV--MSAAVHALKALLVSSEDEECMDSTFSWYLGLASFPLLPSSQDDEEEDYEGVDGCMKQTAKEKEEQKSDFDVTQQDVVKGLL-KMKLLPRLRYIL--EVMRPSPRVAQDVLQILTRVARHSLSSATEVLN 588

HSP 2 Score: 66.6254 bits (161), Expect = 1.716e-10
Identity = 92/354 (25.99%), Postives = 147/354 (41.53%), Query Frame = 3 
Query: 2481 YKAAIRILPHLGPCLYHHLGADLLNKIIFNPAII-------------GSMKI---------PIDQSILELLLEF---LPNIRTLY-------ESFVPGFRQM---ENP--KPGFIQPINSRFVPIDWFDYPFTK---QCKKNVNNSEETIDLVLSE-QSIVACLAFISFLEAGNIVNHKVVP-ITGIKRL-CHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQID----------ISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQ 3383
            ++ A+ +LP L P    +L  +LL+ +IFN   I             G +K+         P  Q++  LL E    LP+IR  +       E  V   R+     NP      +  +    +P DW   P  K   Q   +        +L     Q+ V CL ++  LE     + KVVP +  + RL C  L ++D    L +PV +L  T  L +     S++D          ++    L+ +L  QY SVS  D L    VL P   R+    R  ++  +   LR + V L +  IPI ++  P E  + L+  Y+  L    +  S   +LY + + H+N F+F+Q
Sbjct:  983 HQVALVLLPWLLPG-SEYLAHELLSTVIFNKDFISEGHSGGPEAVELGELKLHDDVRLHPSPSLQTVGALLREACVQLPSIRGCFLTHLAYLEPSVIASRKALLGRNPWISSHLLPEVTGPTLPSDWPFLPLIKLYEQTGVSGGGGLAVEELPAGALQAAVHCLQWLLLLEVWREESLKVVPPVAKLARLSCVFLCSSDLF--LERPVQKL--TWGLFRLLTRASRLDSLDLDVPPPGLASFQDLYSALLAQYESVSFGDQLFGCWVLLPLQRRYSASLRLAVFGEHVGMLRSLGVTLEQLSIPIEQFTSPPEDSLPLLRLYFRSLVTGSLKLSWCPVLYVVALSHVNSFIFSQ 1331
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Planmine SMEST
Match: SMESG000050104.1 (SMESG000050104.1)

HSP 1 Score: 2410.56 bits (6246), Expect = 0.000e+0
Identity = 1184/1192 (99.33%), Postives = 1189/1192 (99.75%), Query Frame = 3 
Query:   21 MVTPNLNNIKFSITEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIQLLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSECYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQCPLAPPSHHPIMGSMLHLINNFLSHQFTRHDLSTHSVATNVWKNFISVFLASPLLGQLLQKLPDSSVLGYEHRNSGHEFICLDLVNLLHNSTRLAVKTRNPKFIDFQPSFINLDPSFSVLSGICHTISLIFSTHISIRFLSDFPLFPNSNSFPHLMRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHLSSIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSMKIPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI 3596
            MVTPNLNNIKFSI EKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGLPPDDEDDQEELFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAI+LLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSECYWTSAVAHSFITSLAVFVSSM IVSLTLYSSIESLVSVMQSKLLQCPLAPPSHHPIMGSMLHLINNFLSHQFTRHDLSTHSVATNVWKNFISVFLASPLLGQLLQKLPDSSVLGYEH NSGHEFICLDLVNLLHNSTRLAVKTRNPKFIDFQPSFINLDPSFSVLSGICHTISLIFSTHISIRFLSDFPLFPNSNSFPHLMRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHL+SIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSM+IPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKL+MIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAIS+PEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI
Sbjct:    1 MVTPNLNNIKFSIIEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGLPPDDEDDQEELFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIRLLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSECYWTSAVAHSFITSLAVFVSSMFIVSLTLYSSIESLVSVMQSKLLQCPLAPPSHHPIMGSMLHLINNFLSHQFTRHDLSTHSVATNVWKNFISVFLASPLLGQLLQKLPDSSVLGYEHHNSGHEFICLDLVNLLHNSTRLAVKTRNPKFIDFQPSFINLDPSFSVLSGICHTISLIFSTHISIRFLSDFPLFPNSNSFPHLMRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHLASIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSMEIPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLQMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISNPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI 1192
[Close]
BLAST of RNA polymerase II-associated protein 1 vs. Planmine SMEST
Match: SMESG000046100.1 (SMESG000046100.1)

HSP 1 Score: 1164.83 bits (3012), Expect = 0.000e+0
Identity = 587/621 (94.52%), Postives = 591/621 (95.17%), Query Frame = 3 
Query:   21 MVTPNLNNIKFSITEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGLPPXXXXXXXXLFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIQLLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSECYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQC-PLAP--PSHHPI 1874
            MVTPNLNNIKFSITEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGL PDDEDDQEELFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARS                       EHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLL+TLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAI+LLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSE YWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQC P +P  PS+H I
Sbjct:    1 MVTPNLNNIKFSITEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFPYRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGWSAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICNEKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYIDEKAEKSKLKSIRFHISGAGLSPDDEDDQEELFDKPPTEFDPFADSLHHHGEEPSRKGYTISELFWLARS-----------------------EHVYHFNLPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDNDEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAEDIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMACSVANDYEDLLITLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTRDQRIVQCLYTLIVNTETGDDCSKIEAIRLLTVFIAREIHAGPIGTIIPSIVDQLSNQLDSEWYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSVMQSKLLQCPPRSPITPSYHGI 598
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BLAST of RNA polymerase II-associated protein 1 vs. Planmine SMEST
Match: SMESG000046101.1 (SMESG000046101.1)

HSP 1 Score: 876.7 bits (2264), Expect = 0.000e+0
Identity = 424/430 (98.60%), Postives = 429/430 (99.77%), Query Frame = 3 
Query: 2307 MRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHLSSIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSMKIPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISDPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI 3596
            MRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHL+SIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSM+IPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQ+DISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSR ATESDPKDPICIQRKMVLAIS+PEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKR+QHLDKLKI
Sbjct:    1 MRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIISVVNACQWVNMPIDHLASIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFNPAIIGSMEIPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQPINSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLEAGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFANISQMDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTLWKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIESRNELLYWICIHHLNRFMFNQSLESSRAATESDPKDPICIQRKMVLAISNPEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRIQHLDKLKI 430
The following BLAST results are available for this feature:
BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RPAP13.280e-1622.22RNA polymerase II associated protein 1 [Source:HGN... [more]
RPAP14.701e-1622.13RNA polymerase II associated protein 1 [Source:HGN... [more]
RPAP18.834e-1622.58RNA polymerase II associated protein 1 [Source:HGN... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG321045.425e-1227.76gene:FBgn0052104 transcript:FBtr0075986[more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rpap11.556e-1625.38RNA polymerase II associated protein 1 [Source:ZFI... [more]
rpap14.122e-1627.07RNA polymerase II associated protein 1 [Source:ZFI... [more]
rpap14.122e-1627.07RNA polymerase II associated protein 1 [Source:ZFI... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
gdf96.143e-1928.91growth differentiation factor 9 [Source:Xenbase;Ac... [more]
gdf97.200e-1928.63growth differentiation factor 9 [Source:Xenbase;Ac... [more]
gdf97.351e-1928.63growth differentiation factor 9 [Source:Xenbase;Ac... [more]
gdf92.420e-1829.78growth differentiation factor 9 [Source:Xenbase;Ac... [more]
gdf91.017e-1628.52growth differentiation factor 9 [Source:Xenbase;Ac... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Rpap11.224e-1722.72RNA polymerase II associated protein 1 [Source:MGI... [more]
Rpap11.226e-1722.72RNA polymerase II associated protein 1 [Source:MGI... [more]
Rpap11.226e-1722.72RNA polymerase II associated protein 1 [Source:MGI... [more]
Rpap11.226e-1722.72RNA polymerase II associated protein 1 [Source:MGI... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q80TE0|RPAP1_MOUSE8.579e-1722.72RNA polymerase II-associated protein 1 OS=Mus musc... [more]
sp|Q9BWH6|RPAP1_HUMAN1.575e-1522.22RNA polymerase II-associated protein 1 OS=Homo sap... [more]
sp|A0JN53|RPAP1_BOVIN6.115e-1423.11RNA polymerase II-associated protein 1 OS=Bos taur... [more]
sp|Q3T1I9|RPAP1_RAT6.951e-1424.04RNA polymerase II-associated protein 1 OS=Rattus n... [more]
sp|Q04418|RBA50_YEAST1.853e-735.58RNA polymerase II-associated protein RBA50 OS=Sacc... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0L8IF791.407e-2726.84Laminin IV type B domain-containing protein (Fragm... [more]
A0A437C3X84.063e-2725.31Uncharacterized protein OS=Oryzias javanicus OX=12... [more]
A0A1B6CGL56.733e-2622.08Uncharacterized protein OS=Clastoptera arizonana O... [more]
A0A3P9M4371.012e-2527.18RNA polymerase II associated protein 1 OS=Oryzias ... [more]
A0A3P9KNS21.106e-2527.18RNA polymerase II associated protein 1 OS=Oryzias ... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpap15.703e-2125.29RNA polymerase II associated protein 1 [Source:ZFI... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpap13.895e-2222.65RNA polymerase II associated protein 1 [Source:ZFI... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
RBA502.668e-935.58Protein involved in transcription; interacts with ... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO486275.309e-2526.42Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpap14.692e-2927.93RNA polymerase II associated protein 1 [Source:NCB... [more]
rpap15.264e-2927.93RNA polymerase II associated protein 1 [Source:NCB... [more]
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BLAST of RNA polymerase II-associated protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000050104.10.000e+099.33SMESG000050104.1[more]
SMESG000046100.10.000e+094.52SMESG000046100.1[more]
SMESG000046101.10.000e+098.60SMESG000046101.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014357 ID=SMED30014357|Name=RNA polymerase II-associated protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=3618bp
TTCCGATCTTTTAAATTATAATGGTTACTCCCAATTTGAATAATATTAAG
TTTTCAATTACTGAAAAACCTTTAGTTAAAACTATTCTTCCTAAATTGGA
TCTTAAACAGGTTCATAAGCCACACGCTTTGTCATTTAATCTTGAAAATG
AAGAAAATTTTTCTTTTCCATATAGACGTGATAATTCCTCTAATAAATGC
AATTCTACTGAAAAACTAATTAATGCATCTTCAGTTATTAGTGGAATGAG
AGCTGAAAATATAGATGCTGATAAACTTTTAAACAACTCACATGAGAAAA
ACTCACAATTGCCTGGTTGGAGTGCACGAGAAATTGCACAATACAGAAAT
GAAATACAGCAAAACTTTAAACCAGAAACTTTGGAAGCAATTAAAAATCT
AAAGATTAAAAGATTAAAAAAAGAAACAAACGAAATGAAGATGTTGAAAA
AAATCAAGGACATTTGTAATGAGAAACCCGAAGAAGATGAAACAATTGAG
AAAATGGAAATCGTCGATGATAAAGTAAAGGATTTATCATTCCTTCCAAT
CAGCCCGAATAATAATTATATCAATATGAATACGCTGGAGATGGACAAAT
TGGAATGGATGAAATACATTGATGAAAAAGCCGAGAAATCAAAACTGAAA
TCTATCCGTTTCCACATCAGTGGAGCGGGCTTGCCTCCGGATGATGAGGA
CGATCAAGAGGAATTATTCGATAAACCTCCCACAGAATTCGATCCATTCG
CCGACTCCCTCCATCACCATGGGGAGGAACCGTCAAGAAAAGGTTACACG
ATCAGCGAATTATTTTGGCTGGCAAGAAGCGGTTTTTTAATGCAAAGGAG
TCTTGCCGTATCGACACTGATAAATATGCTGAATAAATCATCCAATCTAG
AGCACGTATACCATTTCAATCTGCCAACCGTCACACAGAGTCTCGTTGAT
TGTGGAATCGTATTTCTCGCTCGTTGGCTGATTGATGAAGCTGGTGAACG
CCAGCAGCACTTGCATCAAGCACTGGAATTGCTGGACGCTGTACTCTCCA
ATGGCAACCGTGTCGATAACGATGAAGTGACACTCAATTGGCCCGATTAT
CGAGTCGCGTTTGCTCTGCCACAATTGATCGATCAGGCCGTGCTCGACAA
ACAGAAGGCTCGATTAGCACTGTCATTTTCGGAACAGTCGAAACTGCAGG
ACGATATCCTGATGGCGGAAGATATCGTGACCTGTTTGGTAACCAAGACG
CATTTTTTCGAACGGCTTTCGTTTTTGCTGGTTAAGAACCATTTAAATCT
CGACGAAAGAACGATTGGGCTATTCATTCGGATAGTTGAACGGATCGCTC
GGCACTCTGTGGAAATGGCGTGTTCAGTTGCCAATGACTATGAGGATCTA
CTAATGACCCTCATCGATGCTCACCTGTTTTCTGAGCTTACTGAATGCAC
AGCAAGCATGCTACGACTCGTCCGATGCCTCTGTCAAGCTAGTGAATCGA
TCGCTCACAAATTGACCCGGGATCAACGGATCGTCCAATGTCTCTACACA
TTGATCGTCAATACGGAAACTGGAGATGATTGTAGTAAAATTGAAGCCAT
CCAATTGTTGACCGTTTTTATTGCTCGCGAAATCCACGCTGGCCCGATTG
GCACAATCATTCCGTCCATTGTCGACCAGTTGAGCAATCAACTCGATTCC
GAGTGTTATTGGACATCCGCAGTCGCTCATTCCTTCATTACCAGTCTAGC
GGTGTTCGTGTCGAGTATGTCTATCGTTTCTCTCACTCTTTATTCCTCAA
TCGAATCACTGGTTTCTGTTATGCAATCAAAACTGCTGCAGTGCCCCCTC
GCTCCCCCATCACACCATCCGATCATGGGATCCATGCTCCACCTAATAAA
TAATTTCCTCTCCCACCAATTCACTCGACATGATCTCTCTACTCATTCTG
TAGCCACAAATGTTTGGAAGAATTTCATTTCAGTCTTCCTCGCATCTCCC
TTGCTAGGCCAATTGCTCCAGAAGTTACCAGATTCCTCTGTCCTAGGCTA
TGAGCATCGCAATTCAGGACATGAATTCATTTGCCTCGATTTGGTGAATC
TGCTCCACAATTCAACCCGCCTAGCAGTCAAAACTCGCAATCCGAAATTC
ATTGACTTCCAGCCCTCTTTTATCAATCTCGATCCGAGTTTCTCCGTTCT
ATCTGGGATTTGCCACACAATTTCCCTGATTTTCTCTACTCATATTTCCA
TTAGATTCTTATCAGATTTCCCCCTCTTTCCAAATTCGAATTCGTTTCCT
CACTTAATGAGATTTATCAATTTCGTTGCCGAAACTCCAATCGATAAAGT
GGCCAACGTTTCTGCTCATTCAGCGATTGTCCAGTTGCAGTTGGAAGCCA
CCACCCAATTGATTATCTCTGTGGTCAATGCGTGCCAATGGGTAAACATG
CCTATCGATCATCTCTCATCGATCGCCATTTACAAGGCGGCAATCAGAAT
CCTGCCCCATTTGGGCCCGTGCCTCTATCACCATCTTGGCGCAGACCTCC
TCAACAAGATCATATTCAATCCAGCTATTATCGGGTCGATGAAAATCCCG
ATCGATCAATCGATATTGGAACTGTTATTGGAGTTCCTTCCGAATATCAG
AACACTATATGAAAGCTTTGTTCCGGGATTTCGACAAATGGAAAATCCGA
AGCCCGGTTTCATTCAACCAATCAACAGTCGATTTGTACCAATCGATTGG
TTTGATTATCCATTCACCAAGCAGTGCAAGAAAAATGTAAATAATTCCGA
AGAAACGATCGATTTGGTGTTATCAGAACAATCGATAGTGGCCTGCTTGG
CATTCATCTCGTTCCTGGAAGCCGGCAACATCGTTAATCACAAAGTCGTT
CCGATTACAGGAATAAAGCGGCTGTGCCACCTCCTGGTCAACAATGATTG
GATCGATAACCTATGGCAACCGGTTGCCAGGCTGATGCTCACAAATTTCC
TGACTCAATATTTTGCCAACATCTCACAGATCGATATTTCCAAGATTTCA
GGTCTGTTCGATTCTCTGTGCGAGCAATATTTCTCTGTGTCTTCGTGTGA
CTCCTTATTAGCCAATCTCGTGCTGTTCCCATGCGCCATGAGATTCCCCG
TGAAATACCGGCGAACATTGTGGAAAAACAACTGCGAAAAATTGCGAATG
ATTGTTGTCGACTTGTCCGAAAGTATCATACCGATCATCGAGTATTTGCA
ACCGGAAGAGATCGATATTGAGCTTATTCTCTATTATTGGGATGTGCTGT
GGAATGATTTCATTATAGAATCCAGAAACGAGCTCTTGTATTGGATTTGT
ATTCACCACTTGAATCGGTTTATGTTCAATCAATCACTTGAGTCATCACG
GACAGCAACCGAGTCTGATCCCAAGGATCCGATATGCATCCAGCGCAAAA
TGGTCCTTGCAATCAGCGATCCTGAGTGGCAACGCAAACCGTTTATCAAG
CATTTAAAACTGTACAAGCATTTTGTAAATTCTACAGTGGAATTTTACGC
TGAACTTCCAGATAAACGCGTTCAGCATCTCGACAAATTGAAGATTTAAA
TATATAAATTTTTGTTTT
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protein sequence of SMED30014357-orf-1

>SMED30014357-orf-1 ID=SMED30014357-orf-1|Name=SMED30014357-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1193bp
MVTPNLNNIKFSITEKPLVKTILPKLDLKQVHKPHALSFNLENEENFSFP
YRRDNSSNKCNSTEKLINASSVISGMRAENIDADKLLNNSHEKNSQLPGW
SAREIAQYRNEIQQNFKPETLEAIKNLKIKRLKKETNEMKMLKKIKDICN
EKPEEDETIEKMEIVDDKVKDLSFLPISPNNNYINMNTLEMDKLEWMKYI
DEKAEKSKLKSIRFHISGAGLPPDDEDDQEELFDKPPTEFDPFADSLHHH
GEEPSRKGYTISELFWLARSGFLMQRSLAVSTLINMLNKSSNLEHVYHFN
LPTVTQSLVDCGIVFLARWLIDEAGERQQHLHQALELLDAVLSNGNRVDN
DEVTLNWPDYRVAFALPQLIDQAVLDKQKARLALSFSEQSKLQDDILMAE
DIVTCLVTKTHFFERLSFLLVKNHLNLDERTIGLFIRIVERIARHSVEMA
CSVANDYEDLLMTLIDAHLFSELTECTASMLRLVRCLCQASESIAHKLTR
DQRIVQCLYTLIVNTETGDDCSKIEAIQLLTVFIAREIHAGPIGTIIPSI
VDQLSNQLDSECYWTSAVAHSFITSLAVFVSSMSIVSLTLYSSIESLVSV
MQSKLLQCPLAPPSHHPIMGSMLHLINNFLSHQFTRHDLSTHSVATNVWK
NFISVFLASPLLGQLLQKLPDSSVLGYEHRNSGHEFICLDLVNLLHNSTR
LAVKTRNPKFIDFQPSFINLDPSFSVLSGICHTISLIFSTHISIRFLSDF
PLFPNSNSFPHLMRFINFVAETPIDKVANVSAHSAIVQLQLEATTQLIIS
VVNACQWVNMPIDHLSSIAIYKAAIRILPHLGPCLYHHLGADLLNKIIFN
PAIIGSMKIPIDQSILELLLEFLPNIRTLYESFVPGFRQMENPKPGFIQP
INSRFVPIDWFDYPFTKQCKKNVNNSEETIDLVLSEQSIVACLAFISFLE
AGNIVNHKVVPITGIKRLCHLLVNNDWIDNLWQPVARLMLTNFLTQYFAN
ISQIDISKISGLFDSLCEQYFSVSSCDSLLANLVLFPCAMRFPVKYRRTL
WKNNCEKLRMIVVDLSESIIPIIEYLQPEEIDIELILYYWDVLWNDFIIE
SRNELLYWICIHHLNRFMFNQSLESSRTATESDPKDPICIQRKMVLAISD
PEWQRKPFIKHLKLYKHFVNSTVEFYAELPDKRVQHLDKLKI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR039913RPAP1/Rba50
IPR013929RNA_pol_II_AP1_C
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0016740transferase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: cellular component
TermDefinition
GO:0005634nucleus
Vocabulary: biological process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039913RNA polymerase II-associated protein RPAP1/Rba50PANTHERPTHR21483FAMILY NOT NAMEDcoord: 75..362