LIM domain only protein 7

Overview
NameLIM domain only protein 7
Smed IDSMED30014355
Length (bp)4324
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of LIM domain only protein 7 (SMED30014355) t-SNE clustered cells

Violin plots show distribution of expression levels for LIM domain only protein 7 (SMED30014355) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of LIM domain only protein 7 (SMED30014355) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for LIM domain only protein 7 (SMED30014355) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30014355

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30014355h1SMcG0018057 Contig4210newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30014355h1SMcG0018057 Contig4210uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
protonephridiaSMED30014355h1SMcG0018057 dd_Smed_v4_10011_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30014355h1SMcG0018057 dd_Smed_v4_10011_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30014355h1SMcG0018057 dd_Smed_v4_10011_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Human
Match: LMO7 (LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646])

HSP 1 Score: 97.0561 bits (240), Expect = 1.514e-19
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
            DFR SL +G++LC+L+N LKPG IK+IN++ST I+G DN+  FL+ CE   GL    LF   DL+DLS ++   Q ++++R++ VL+ L+ L +  +++
Sbjct:   34 DFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSN 131
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Human
Match: LMO7 (LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646])

HSP 1 Score: 95.5153 bits (236), Expect = 6.035e-19
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
            DFR SL +G++LC+L+N LKPG IK+IN++ST I+G DN+  FL+ CE   GL    LF   DL+DLS ++   Q ++++R++ VL+ L+ L +  +++
Sbjct:   34 DFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSN 131

HSP 2 Score: 56.6102 bits (135), Expect = 3.980e-7
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query: 3859 ISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            I + CNN L   G    M+IE L L +HL CF C  C+  LG   +  +VRIR  +L+C  CY
Sbjct: 1561 ICSYCNNIL---GKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCY 1620
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Human
Match: LMO7 (LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646])

HSP 1 Score: 95.5153 bits (236), Expect = 6.207e-19
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
            DFR SL +G++LC+L+N LKPG IK+IN++ST I+G DN+  FL+ CE   GL    LF   DL+DLS ++   Q ++++R++ VL+ L+ L +  +++
Sbjct:   86 DFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSN 183

HSP 2 Score: 56.9954 bits (136), Expect = 3.446e-7
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query: 3859 ISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            I + CNN L   G    M+IE L L +HL CF C  C+  LG   +  +VRIR  +L+C  CY
Sbjct: 1279 ICSYCNNIL---GKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCY 1338
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Human
Match: LMO7 (LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646])

HSP 1 Score: 95.1301 bits (235), Expect = 7.968e-19
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
            DFR SL +G++LC+L+N LKPG IK+IN++ST I+G DN+  FL+ CE   GL    LF   DL+DLS ++   Q ++++R++ VL+ L+ L +  +++
Sbjct:   71 DFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSN 168

HSP 2 Score: 56.6102 bits (135), Expect = 4.131e-7
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query: 3859 ISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            I + CNN L   G    M+IE L L +HL CF C  C+  LG   +  +VRIR  +L+C  CY
Sbjct: 1598 ICSYCNNIL---GKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCY 1657
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Human
Match: LIMCH1 (LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191])

HSP 1 Score: 87.8113 bits (216), Expect = 1.323e-16
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNIILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKSLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 72.4034 bits (176), Expect = 5.623e-12
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C  P G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct:  987 CSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCY 1045
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Celegans
Match: lim-8 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q95QI2])

HSP 1 Score: 72.4034 bits (176), Expect = 1.954e-12
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            +C +C +  G    M++E LNL +HL CF C  CK  LG G T  DVR+R  +LHC  CY
Sbjct:  799 RCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCY 858
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Celegans
Match: lim-8 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q95QI2])

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            +C +C +  G    M++E LNL +HL CF C  CK  LG G T  DVR+R  +LHC  CY
Sbjct:  935 RCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCY 994
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Celegans
Match: lim-8 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q95QI2])

HSP 1 Score: 72.4034 bits (176), Expect = 2.049e-12
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            +C +C +  G    M++E LNL +HL CF C  CK  LG G T  DVR+R  +LHC  CY
Sbjct: 1030 RCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCY 1089
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Fly
Match: smash (gene:FBgn0263346 transcript:FBtr0308853)

HSP 1 Score: 72.0182 bits (175), Expect = 3.186e-12
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C    G    M+IE L L +H+ CF C  C VQLGDG   TDVR+R  KLHC  CY
Sbjct:  819 KCSHCGDELGRGAAMIIESLLLFYHINCFKCCVCHVQLGDGLNGTDVRVRNHKLHCQNCY 878
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Fly
Match: smash (gene:FBgn0263346 transcript:FBtr0308855)

HSP 1 Score: 72.0182 bits (175), Expect = 4.581e-12
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C    G    M+IE L L +H+ CF C  C VQLGDG   TDVR+R  KLHC  CY
Sbjct: 1463 KCSHCGDELGRGAAMIIESLLLFYHINCFKCCVCHVQLGDGLNGTDVRVRNHKLHCQNCY 1522
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Fly
Match: smash (gene:FBgn0263346 transcript:FBtr0308857)

HSP 1 Score: 65.855 bits (159), Expect = 3.045e-10
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 
Query: 3910 MVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            M+IE L L +H+ CF C  C VQLGDG   TDVR+R  KLHC  CY
Sbjct: 1485 MIIESLLLFYHINCFKCCVCHVQLGDGLNGTDVRVRNHKLHCQNCY 1530
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Fly
Match: Chd64 (gene:FBgn0035499 transcript:FBtr0310531)

HSP 1 Score: 53.9138 bits (128), Expect = 1.230e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            +F + L DG++LC L N L+PG+IK+IN+        +N+  FL C + +FG+ +   F+  DL +             + L  V++CL  L +   N
Sbjct:   38 NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAK-NFGVPTQETFQSVDLWE------------RQNLNSVVICLQSLGRKASN 122
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Fly
Match: Chd64 (gene:FBgn0035499 transcript:FBtr0073270)

HSP 1 Score: 53.9138 bits (128), Expect = 1.239e-7
Identity = 30/98 (30.61%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            +F + L DG++LC L N L+PG+IK+IN+        +N+  FL C + +FG+ +   F+  DL +             + L  V++CL  L +   N
Sbjct:   51 NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAK-NFGVPTQETFQSVDLWE------------RQNLNSVVICLQSLGRKASN 135
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Match: lmo7b (LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242])

HSP 1 Score: 84.3445 bits (207), Expect = 2.750e-18
Identity = 39/97 (40.21%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            FR +L DG++LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C+   GL+   LF   DL+D+S ++   + ++ +RL+ VL+ ++ L +  ++
Sbjct:   35 FRVALEDGVLLCDLINTLKPGIIKRLNRLSTPIAGLDNVNVFLKACK-KLGLNEAQLFHPGDLQDVSTRVTVRREETNRRLKNVLITIYWLGRKAQS 130
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Match: CR788257.1 (pep chromosome:GRCz11:CHR_ALT_CTG1_1_37:34428368:34446241:-1 gene:ENSDARG00000111361.1 transcript:ENSDART00000184405.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR788257.1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.371e-18
Identity = 39/97 (40.21%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            FR +L DG++LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C+   GL+   LF   DL+D+S ++   + ++ +RL+ VL+ ++ L +  ++
Sbjct:   35 FRVALEDGVLLCDLINTLKPGIIKRLNRLSTPIAGLDNVNVFLKACK-KLGLNEAQLFHPGDLQDVSTRVTVRREETNRRLKNVLITIYWLGRKAQS 130
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Match: lmo7b (LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242])

HSP 1 Score: 87.8113 bits (216), Expect = 9.025e-17
Identity = 39/97 (40.21%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            FR +L DG++LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C+   GL+   LF   DL+D+S ++   + ++ +RL+ VL+ ++ L +  ++
Sbjct:   20 FRVALEDGVLLCDLINTLKPGIIKRLNRLSTPIAGLDNVNVFLKACK-KLGLNEAQLFHPGDLQDVSTRVTVRREETNRRLKNVLITIYWLGRKAQS 115

HSP 2 Score: 61.6178 bits (148), Expect = 8.409e-9
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDG-KTDTDVRIRRSKLHCAICY 4047
            C+ C QP G    MVI+ L L FH+ CF C  C+ +LG G ++   VR+R  +L C  CY
Sbjct: 1103 CSRCEQPLGKGAAMVIDSLELCFHIGCFKCVSCRTELGRGPESGAQVRVRHRQLFCNTCY 1162
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Match: lmo7b (LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242])

HSP 1 Score: 87.4261 bits (215), Expect = 9.920e-17
Identity = 39/97 (40.21%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVEN 498
            FR +L DG++LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C+   GL+   LF   DL+D+S ++   + ++ +RL+ VL+ ++ L +  ++
Sbjct:   35 FRVALEDGVLLCDLINTLKPGIIKRLNRLSTPIAGLDNVNVFLKACK-KLGLNEAQLFHPGDLQDVSTRVTVRREETNRRLKNVLITIYWLGRKAQS 130

HSP 2 Score: 61.6178 bits (148), Expect = 8.536e-9
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDG-KTDTDVRIRRSKLHCAICY 4047
            C+ C QP G    MVI+ L L FH+ CF C  C+ +LG G ++   VR+R  +L C  CY
Sbjct: 1314 CSRCEQPLGKGAAMVIDSLELCFHIGCFKCVSCRTELGRGPESGAQVRVRHRQLFCNTCY 1373
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Match: lmo7a (LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74])

HSP 1 Score: 86.6557 bits (213), Expect = 2.370e-16
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAK 486
            ++FR SL +G++LC+L+N +KPG IK++N+ ST I+G DN+  FL+ C    GL    LF   DL+DLS ++     +S +RL+ VL+ ++ L +
Sbjct:   33 SNFRSSLENGLLLCDLINKIKPGIIKKLNRFSTPIAGLDNINLFLKACA-KLGLKEAQLFHPGDLQDLSTRVTVKHQESSRRLKNVLITIYWLGR 126

HSP 2 Score: 65.855 bits (159), Expect = 4.321e-10
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L L +HL CF CS+C+  LG  +   +VRIR  +L+C +CY
Sbjct: 1757 CSFCDTPLGKGAAMIIESLGLCYHLTCFKCSDCRSDLGGSQAGAEVRIRNQQLYCNVCY 1815
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Match: tom1l2 (target of myb1 like 2 membrane trafficking protein [Source:Xenbase;Acc:XB-GENE-1012167])

HSP 1 Score: 85.1149 bits (209), Expect = 8.644e-16
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +  +   D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTARNSDCNRKLRNVLITVYWLGKAA 137

HSP 2 Score: 71.633 bits (174), Expect = 1.131e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1387 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCY 1445
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Match: tom1l2 (target of myb1 like 2 membrane trafficking protein [Source:Xenbase;Acc:XB-GENE-1012167])

HSP 1 Score: 84.7297 bits (208), Expect = 9.689e-16
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +  +   D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTARNSDCNRKLRNVLITVYWLGKAA 137

HSP 2 Score: 71.633 bits (174), Expect = 1.142e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1300 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCY 1358
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Match: tom1l2 (target of myb1 like 2 membrane trafficking protein [Source:Xenbase;Acc:XB-GENE-1012167])

HSP 1 Score: 84.7297 bits (208), Expect = 1.219e-15
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +  +   D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTARNSDCNRKLRNVLITVYWLGKAA 137

HSP 2 Score: 71.633 bits (174), Expect = 1.239e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1825 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCY 1883
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Match: tom1l2 (target of myb1 like 2 membrane trafficking protein [Source:Xenbase;Acc:XB-GENE-1012167])

HSP 1 Score: 84.3445 bits (207), Expect = 1.280e-15
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +  +   D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTARNSDCNRKLRNVLITVYWLGKAA 137

HSP 2 Score: 71.2478 bits (173), Expect = 1.226e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1026 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCY 1084
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Match: tom1l2 (target of myb1 like 2 membrane trafficking protein [Source:Xenbase;Acc:XB-GENE-1012167])

HSP 1 Score: 84.3445 bits (207), Expect = 1.294e-15
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +  +   D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTARNSDCNRKLRNVLITVYWLGKAA 137

HSP 2 Score: 71.2478 bits (173), Expect = 1.200e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1011 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCY 1069
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Match: Lmo7 (LIM domain only 7 [Source:MGI Symbol;Acc:MGI:1353586])

HSP 1 Score: 97.4413 bits (241), Expect = 1.069e-19
Identity = 44/100 (44.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
             DFR SL +G++LC+L+N LKPG +K+IN++ST I+G DN+  FLR CE   GL    LF   DL+DLS ++   Q ++++RL+ VL+ L+ L +  +++
Sbjct:   33 TDFRASLENGVLLCDLINKLKPGVVKKINRLSTPIAGLDNINVFLRACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRLKNVLITLYWLGRKAQSN 131

HSP 2 Score: 56.225 bits (134), Expect = 3.726e-7
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            CNN L   G    M+IE L L +HL CF C  C   LG   +  +VRIR  +L+C  CY
Sbjct: 1633 CNNIL---GKGAAMIIETLGLSYHLHCFKCVSCGCDLGGSSSGAEVRIRNHQLYCNDCY 1688
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Match: Limch1 (LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819])

HSP 1 Score: 86.6557 bits (213), Expect = 1.673e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN   FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 69.707 bits (169), Expect = 2.553e-11
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C    G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct:  987 CSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 1045
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Match: Limch1 (LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819])

HSP 1 Score: 86.6557 bits (213), Expect = 1.994e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN   FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 69.707 bits (169), Expect = 3.119e-11
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C    G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct: 1441 CSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 1499
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Match: Limch1 (LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819])

HSP 1 Score: 86.6557 bits (213), Expect = 2.027e-16
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN   FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 69.707 bits (169), Expect = 2.542e-11
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C    G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct:  998 CSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 1056
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Match: Limch1 (LIM and calponin homology domains 1 [Source:MGI Symbol;Acc:MGI:1924819])

HSP 1 Score: 62.3882 bits (150), Expect = 1.080e-11
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1 
Query: 3910 MVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct:    3 MIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 48
[Close]
BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Match: sp|Q8WWI1|LMO7_HUMAN (LIM domain only protein 7 OS=Homo sapiens OX=9606 GN=LMO7 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.211e-18
Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENH 501
            DFR SL +G++LC+L+N LKPG IK+IN++ST I+G DN+  FL+ CE   GL    LF   DL+DLS ++   Q ++++R++ VL+ L+ L +  +++
Sbjct:   86 DFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACE-QIGLKEAQLFHPGDLQDLSNRVTVKQEETDRRVKNVLITLYWLGRKAQSN 183

HSP 2 Score: 56.6102 bits (135), Expect = 1.987e-6
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 
Query: 3859 ISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            I + CNN L   G    M+IE L L +HL CF C  C+  LG   +  +VRIR  +L+C  CY
Sbjct: 1613 ICSYCNNIL---GKGAAMIIESLGLCYHLHCFKCVACECDLGGSSSGAEVRIRNHQLYCNDCY 1672
[Close]
BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Match: sp|Q9UPQ0|LIMC1_HUMAN (LIM and calponin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=LIMCH1 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 6.659e-16
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNIILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKSLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 72.4034 bits (176), Expect = 2.893e-11
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C  P G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct: 1013 CSSCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCY 1071
[Close]
BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Match: sp|Q3UH68|LIMC1_MOUSE (LIM and calponin homology domains-containing protein 1 OS=Mus musculus OX=10090 GN=Limch1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.170e-15
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN   FLR C+ + GL    LF  SDL+D S ++    LD  ++L+ VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILFLRGCK-ELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAA 137

HSP 2 Score: 69.707 bits (169), Expect = 1.786e-10
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C    G    M+IE LNL+FH++CF C  CK QLGD  + TDVRIR   L+C  CY
Sbjct:  987 CSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCY 1045
[Close]
BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Match: sp|Q3KQW7|LIMC1_XENLA (LIM and calponin homology domains-containing protein 1 OS=Xenopus laevis OX=8355 GN=limch1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.084e-14
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSV 492
            DFR  L +GI+LC L+N +KPG +K+IN++ T I+G DN+  FLR C+ + GL    LF   DL+D + +      D  ++L  VL+ ++ L K+ 
Sbjct:   43 DFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNITLFLRGCK-ELGLKESQLFDPGDLQDTANRTTGRTSDCNRKLRNVLVTVYWLGKAA 137

HSP 2 Score: 72.0182 bits (175), Expect = 3.858e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C+ C  P G    M+IE L+L+FH++CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct: 1013 CSTCGLPLGKGAAMIIETLSLYFHIQCFKCGLCKGQLGDATTGTDVRIRNGLLNCNDCY 1071
[Close]
BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Match: sp|Q15417|CNN3_HUMAN (Calponin-3 OS=Homo sapiens OX=9606 GN=CNN3 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 7.122e-7
Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:  193 IYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKI 519
            I PN F+  L DGI+LC L+N L+PG++K++N+ S      +N+G F++  +  +G+    +F+ +DL         ++  +  +++  L+ L  LAK+   H TT+ I
Sbjct:   44 IGPN-FQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQ-AYGMKPHDIFEANDL---------FENGNMTQVQTTLVALAGLAKTKGFH-TTIDI 140
[Close]
BLAST of LIM domain only protein 7 vs. TrEMBL
Match: A0A1S3HGF6 (trichohyalin isoform X6 OS=Lingula unguis OX=7574 GN=LOC106154675 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.402e-22
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:  187 KFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPS----YQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLK 549
            KF YP+D RKSL +G++LC L+NCL+PG+++RIN++ T I+G DNL  FL  CE+  GL +  LF  S+L+DLS +  +     + + EKRL  V + ++ L K+VE      ++D + F  L+K
Sbjct:   44 KFAYPDDPRKSLENGVLLCELLNCLRPGSVRRINRLPTPIAGIDNLNVFLEACEEQVGLKNSQLFNPSELQDLSTRAIADTDQIKQEIEKRLRSVAITVYWLGKTVEGTYNGPQLDFSAFTGLIK 168
[Close]
BLAST of LIM domain only protein 7 vs. TrEMBL
Match: A0A1S3HEW0 (LIM and calponin homology domains-containing protein 1 isoform X5 OS=Lingula unguis OX=7574 GN=LOC106154675 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.268e-21
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:  187 KFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPS----YQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLK 549
            KF YP+D RKSL +G++LC L+NCL+PG+++RIN++ T I+G DNL  FL  CE+  GL +  LF  S+L+DLS +  +     + + EKRL  V + ++ L K+VE      ++D + F  L+K
Sbjct:   12 KFAYPDDPRKSLENGVLLCELLNCLRPGSVRRINRLPTPIAGIDNLNVFLEACEEQVGLKNSQLFNPSELQDLSTRAIADTDQIKQEIEKRLRSVAITVYWLGKTVEGTYNGPQLDFSAFTGLIK 136

HSP 2 Score: 72.4034 bits (176), Expect = 9.090e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C +  G    MVIE LNL +H++CF C  C   LG+G T  DVR+R SKLHC  CY
Sbjct: 1653 KCSHCNKELGRGAAMVIESLNLFYHVQCFRCCVCHAALGNGSTGADVRVRVSKLHCKNCY 1712
[Close]
BLAST of LIM domain only protein 7 vs. TrEMBL
Match: A0A1S3HHU2 (LIM and calponin homology domains-containing protein 1 isoform X4 OS=Lingula unguis OX=7574 GN=LOC106154675 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-21
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:  187 KFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPS----YQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLK 549
            KF YP+D RKSL +G++LC L+NCL+PG+++RIN++ T I+G DNL  FL  CE+  GL +  LF  S+L+DLS +  +     + + EKRL  V + ++ L K+VE      ++D + F  L+K
Sbjct:   44 KFAYPDDPRKSLENGVLLCELLNCLRPGSVRRINRLPTPIAGIDNLNVFLEACEEQVGLKNSQLFNPSELQDLSTRAIADTDQIKQEIEKRLRSVAITVYWLGKTVEGTYNGPQLDFSAFTGLIK 168

HSP 2 Score: 72.4034 bits (176), Expect = 9.030e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C +  G    MVIE LNL +H++CF C  C   LG+G T  DVR+R SKLHC  CY
Sbjct: 1668 KCSHCNKELGRGAAMVIESLNLFYHVQCFRCCVCHAALGNGSTGADVRVRVSKLHCKNCY 1727
[Close]
BLAST of LIM domain only protein 7 vs. TrEMBL
Match: A0A1S3HGE9 (LIM and calponin homology domains-containing protein 1 isoform X1 OS=Lingula unguis OX=7574 GN=LOC106154675 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.402e-21
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:  187 KFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPS----YQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLK 549
            KF YP+D RKSL +G++LC L+NCL+PG+++RIN++ T I+G DNL  FL  CE+  GL +  LF  S+L+DLS +  +     + + EKRL  V + ++ L K+VE      ++D + F  L+K
Sbjct:   44 KFAYPDDPRKSLENGVLLCELLNCLRPGSVRRINRLPTPIAGIDNLNVFLEACEEQVGLKNSQLFNPSELQDLSTRAIADTDQIKQEIEKRLRSVAITVYWLGKTVEGTYNGPQLDFSAFTGLIK 168

HSP 2 Score: 72.4034 bits (176), Expect = 8.897e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C +  G    MVIE LNL +H++CF C  C   LG+G T  DVR+R SKLHC  CY
Sbjct: 1685 KCSHCNKELGRGAAMVIESLNLFYHVQCFRCCVCHAALGNGSTGADVRVRVSKLHCKNCY 1744
[Close]
BLAST of LIM domain only protein 7 vs. TrEMBL
Match: A0A1S3HER7 (LIM and calponin homology domains-containing protein 1 isoform X3 OS=Lingula unguis OX=7574 GN=LOC106154675 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.411e-21
Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:  187 KFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPS----YQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLK 549
            KF YP+D RKSL +G++LC L+NCL+PG+++RIN++ T I+G DNL  FL  CE+  GL +  LF  S+L+DLS +  +     + + EKRL  V + ++ L K+VE      ++D + F  L+K
Sbjct:   44 KFAYPDDPRKSLENGVLLCELLNCLRPGSVRRINRLPTPIAGIDNLNVFLEACEEQVGLKNSQLFNPSELQDLSTRAIADTDQIKQEIEKRLRSVAITVYWLGKTVEGTYNGPQLDFSAFTGLIK 168

HSP 2 Score: 72.7886 bits (177), Expect = 8.594e-9
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query: 3868 KCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            KC++C +  G    MVIE LNL +H++CF C  C   LG+G T  DVR+R SKLHC  CY
Sbjct: 1677 KCSHCNKELGRGAAMVIESLNLFYHVQCFRCCVCHAALGNGSTGADVRVRVSKLHCKNCY 1736
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000031649.1 (pep primary_assembly:Astyanax_mexicanus-2.0:12:7709746:7727247:1 gene:ENSAMXG00000040175.1 transcript:ENSAMXT00000031649.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 82.8037 bits (203), Expect = 7.745e-18
Identity = 38/98 (38.78%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            ++FR +L +G++LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C    GL+   LF   DL+D+S ++   + ++ +RL+ VL+ ++ L +  +
Sbjct:   33 SNFRSALENGVLLCDLLNKLKPGIIKRVNRLSTPIAGLDNVNVFLKAC-GKLGLNDAQLFHPGDLQDVSTRVTVRREETTRRLKNVLITIYWLGRKAQ 129
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Match: lmo7a (LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74])

HSP 1 Score: 87.0409 bits (214), Expect = 1.314e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            FR SL +G++LC+LVN +KPG I+R+N+ ST I+G DN+  FL+ C    GL    LF   DL+DLS ++     ++ +RL+ VL+ ++ L +  +
Sbjct:   34 FRSSLENGVLLCDLVNKIKPGIIRRVNRHSTPIAGLDNVNIFLKAC-GKLGLKEAQLFHPGDLQDLSTRVTVKHQETSRRLKNVLITIYWLGRKAQ 128
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Match: lmo7a (LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74])

HSP 1 Score: 87.0409 bits (214), Expect = 1.322e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            FR SL +G++LC+LVN +KPG I+R+N+ ST I+G DN+  FL+ C    GL    LF   DL+DLS ++     ++ +RL+ VL+ ++ L +  +
Sbjct:   34 FRSSLENGVLLCDLVNKIKPGIIRRVNRHSTPIAGLDNVNIFLKAC-GKLGLKEAQLFHPGDLQDLSTRVTVKHQETSRRLKNVLITIYWLGRKAQ 128
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Match: lmo7a (LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74])

HSP 1 Score: 86.2705 bits (212), Expect = 2.353e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            FR SL +G++LC+LVN +KPG I+R+N+ ST I+G DN+  FL+ C    GL    LF   DL+DLS ++     ++ +RL+ VL+ ++ L +  +
Sbjct:   34 FRSSLENGVLLCDLVNKIKPGIIRRVNRHSTPIAGLDNVNIFLKAC-GKLGLKEAQLFHPGDLQDLSTRVTVKHQETSRRLKNVLITIYWLGRKAQ 128

HSP 2 Score: 65.0846 bits (157), Expect = 5.668e-10
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C  C  P G    M+IE L L +HL CF C ECK  LG  +   +VRIR  +L+C  CY
Sbjct: 1449 CTFCAMPLGKGAAMIIESLGLCYHLTCFKCFECKTDLGGTEAGAEVRIRNKQLYCNSCY 1507
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Match: lmo7a (LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74])

HSP 1 Score: 86.2705 bits (212), Expect = 2.390e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  208 FRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            FR SL +G++LC+LVN +KPG I+R+N+ ST I+G DN+  FL+ C    GL    LF   DL+DLS ++     ++ +RL+ VL+ ++ L +  +
Sbjct:   34 FRSSLENGVLLCDLVNKIKPGIIRRVNRHSTPIAGLDNVNIFLKAC-GKLGLKEAQLFHPGDLQDLSTRVTVKHQETSRRLKNVLITIYWLGRKAQ 128

HSP 2 Score: 65.0846 bits (157), Expect = 5.840e-10
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C  C  P G    M+IE L L +HL CF C ECK  LG  +   +VRIR  +L+C  CY
Sbjct: 1367 CTFCAMPLGKGAAMIIESLGLCYHLTCFKCFECKTDLGGTEAGAEVRIRNKQLYCNSCY 1425
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Match: lmo7b (LIM domain only protein 7 [Source:NCBI gene;Acc:101172063])

HSP 1 Score: 91.2781 bits (225), Expect = 6.042e-18
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            +DFR +L +GI+LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C    GL+   LF   DL+DLS ++     +S +RL+ VL+ ++ L +  +
Sbjct:   64 SDFRAALENGILLCDLINQLKPGIIKRMNRLSTPIAGLDNVNVFLKAC-GKLGLNESQLFHPGDLQDLSTRVTLRHEESRRRLKNVLITIYWLGRKAQ 160
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Match: lmo7b (LIM domain only protein 7 [Source:NCBI gene;Acc:101172063])

HSP 1 Score: 90.8929 bits (224), Expect = 7.152e-18
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            +DFR +L +GI+LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C    GL+   LF   DL+DLS ++     +S +RL+ VL+ ++ L +  +
Sbjct:   64 SDFRAALENGILLCDLINQLKPGIIKRMNRLSTPIAGLDNVNVFLKAC-GKLGLNESQLFHPGDLQDLSTRVTLRHEESRRRLKNVLITIYWLGRKAQ 160
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Match: lmo7b (LIM domain only protein 7 [Source:NCBI gene;Acc:101172063])

HSP 1 Score: 90.8929 bits (224), Expect = 7.375e-18
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            +DFR +L +GI+LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C    GL+   LF   DL+DLS ++     +S +RL+ VL+ ++ L +  +
Sbjct:   64 SDFRAALENGILLCDLINQLKPGIIKRMNRLSTPIAGLDNVNVFLKAC-GKLGLNESQLFHPGDLQDLSTRVTLRHEESRRRLKNVLITIYWLGRKAQ 160
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Match: lmo7b (LIM domain only protein 7 [Source:NCBI gene;Acc:101172063])

HSP 1 Score: 90.8929 bits (224), Expect = 8.250e-18
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  202 NDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVE 495
            +DFR +L +GI+LC+L+N LKPG IKR+N++ST I+G DN+  FL+ C    GL+   LF   DL+DLS ++     +S +RL+ VL+ ++ L +  +
Sbjct:   64 SDFRAALENGILLCDLINQLKPGIIKRMNRLSTPIAGLDNVNVFLKAC-GKLGLNESQLFHPGDLQDLSTRVTLRHEESRRRLKNVLITIYWLGRKAQ 160
[Close]
BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Match: limch1b (LIM and calponin homology domains 1 [Source:NCBI gene;Acc:101156235])

HSP 1 Score: 90.1225 bits (222), Expect = 1.130e-17
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 1 
Query:  205 DFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVK---IDSAPFNILLKSNHFREMKKKKVVTKS 597
            DFR +L +GI LC L++ +KPG +K+IN++ T I+G DNL  FLR CE + GL    LF   DL+D S +  +   D  +RL+ VL+ ++ L ++  N  T+     +D   F  LL      +M+K+  VT+S
Sbjct:   43 DFRGNLENGIFLCELLSSIKPGLVKKINRLPTPIAGLDNLTAFLRGCE-ELGLKGSQLFDPGDLQDTSTRPTAKGSDCSRRLKNVLITVYWLGRAA-NSFTSYSGPTLDLKEFEALLS-----QMQKEAEVTES 169

HSP 2 Score: 75.485 bits (184), Expect = 3.834e-13
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 
Query: 3871 CNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            C++C QP G    M+IE L+L+FH+ CF C  CK QLGD  T TDVRIR   L+C  CY
Sbjct:  981 CSSCTQPLGKGAAMIIETLSLYFHIHCFKCGLCKGQLGDTTTGTDVRIRNGLLNCHQCY 1039
[Close]
BLAST of LIM domain only protein 7 vs. Planmine SMEST
Match: SMESG000039067.1 (SMESG000039067.1)

HSP 1 Score: 2390.15 bits (6193), Expect = 0.000e+0
Identity = 1269/1289 (98.45%), Postives = 1270/1289 (98.53%), Query Frame = 1 
Query:  181 NQKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKXXXXXXXXXXXXXXLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDNLHNVADRAEVEPNSQTHLKECNINSMATVDIEEIGHINMNLKSLQNFPNIINEISETANNKLEKATTTYETVENRRNYGEESLYSVNNISHMDSEIPEITNRDTNETDREFQLSVQAKIAKFECQNVMTXXXXXXXXXXXXXXXQNTEFAVNNSKYGHRASCEGLVWNSDNVVAKVPETNHSSISNLYHYWETEAPKSSSSNPNLINKNSSVLQTSIHSLVNEKDRDDKCLLETAELNLSTSNVNVVRPWKNGRXXXXXXXXXXXXALNETVEMSQYGSWNKSVKRNLEKSLNDNEKTSSNLCLTKELSSVTSDLITIEDKVLGSEINPSTRTNVSTGIQANIQSRQQPVYTTITTAFESQSRKSLSNSTSKVSEVDTCSVSSSKFHGNIESLIGNLTPASEMGQPIKSLHLSWLPQSNKNDMSKDLTLISPSVVRQENQQNEVDFSSTRTNGFTLGSLENNEKSIEVEVSIIPKLFPMKNKTLFSKPVDEKYRNHKISDPIPVTRSLDDDETALKSSFIKVTDLDDIISPVRSKPNFSRQLDNNSGSPSKTGDIIYSDITKEDEVHNQTPIYQHNISSSDRLSTELLESNIDVEPTISTVPVPTLFKGSHNSDNTISVGMTLSKSENFNPMXXXXXXXXXXXXXXXXXXXELQYKRSSSSKEIRYSQRENPNDAGKSNINYRDNPSSNTTNSRKRSPSQVTFSXXXXXXXXXXXXXXXFSIEKSTKTTPIXXXXXXXXXXXXXXXXXQPEISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 4047
            +QKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKTSFTSDSDPSTSTPLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDNLHNVADRAEVEPNSQTHLKECNINSMATVDIEEIGHINMNLKSLQNFPNIINEISETANNKLEKATTTYETVENRRNYGEESLYSVNNISHMDSEIPEITNRDTNETDREFQLSVQAKIAKFECQNVMTNSLNLNSSLNISKSNQNTEFAVNNSKYGHRASCEGLVWNSDNVVAKVPETNHSSISNLYHYWETEAPKSSSSNPNLINKNSSVLQTSIHSLVNEKDRDDKCLLETAELNLSTSNVNVVRPWKNGRSSCNSSTSDDVSALNETVEMSQYGSWNKSVKRNLEKSLNDNEKTSSNLCLTKELSSVTSDLITIEDKVLGSEINPSTRTNVSTGIQANIQSRQQPVYTTITTAFESQSRKSLSNSTSKVSEVDTCSVSSSKFHGNIESLIGNLTPASEMGQPIKSLHLSWLPQSNKNDMSKDLTLISPSVVRQENQQNEVDFSSTRTNGFTLGSLENNEKSIEVEVSIIPKLFPMKNKTLFSKPVDEKYRNHKISDPIPVTRSLDDDETALKSSFIKVTDLDDIISPVRSKPNFSRQLDNNSGSPSKTGDIIYSDITKEDEVHNQTPIYQHNISSSDRLSTELLESNIDVEPTISTVPVPTLFKGSHNSDNTISVGMTLSKSENFNPMKNESVSSTKKSKNSHSKPNELQYKRSSSSKEIRYSQRENPNDAGKSNINYRDNPSSNTTNSRKRSPSQ                   FSIEKSTKTTPISFSKEKKKSKSQNKKSSQPEISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY
Sbjct:   41 DQKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKTSFTSDSDPSTSTPLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDNLHNVADRAEVEPNSQTHLKECNINSMATVDIEEIGHINMNLKSLQNFPNIINEISETANNKLEKATTTYETVENRRNYGEESLYSVNNISHMDSEIPEITNRDTNETDREFQLSVQAKIAKFECQNVMTNSLNLNSSLNISKSNQNTEFAVNNSKYGHRASCEGLVWNSDNVVAKVPETNHSSISNLYHYWETEAPKSSSSNPNLINKNSSVLQTSIHSLVNEKDRDDKCLLETAELNLSTSNVNVVRPWKNGRSSCNSSTSDDVSALNETVEMSQYGSWNKSVKRNLEKSLNDNEKTSSNLCLTKELSSVTSDLITIEDKVLGSEINPSTRTNVSTGIQANIQSRQQPVYTTITTAFESQSRKSLSNSTSKVSEVDTCSVSSSKFHGNIESLIGNLTPASEMGQPIKSLHLSWLPQSNKNDMSKDLTLISPSVVRQENQQNEVDFSSTRTNGFTLGSLENNEKSIEVEVSIIPKLFPMKNKTLFSKPVDEKYRNHKISDPIPVTRSLDDDETALKSSFIKVTDLDDIISPVRSKPNFSRQLDNNSGSPSKTGDIIYSDITKEDEVHNQTPIYQHNISSSDRLSTELLESNIDVEPTISTVPVPTLFKGSHNSDNTISVGMTLSKSENFNPMKNESVSSTKKSKNSHSKPNELQYKRSSSSKEIRYSQRENPNDAGKSNINYRDNPSSNTTNSRKRSPSQT------------------FSIEKSTKTTPISFSKEKKKSKSQNKKSSQPEISTKCNNCLQPAGSEDLMVIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICY 1311
[Close]
BLAST of LIM domain only protein 7 vs. Planmine SMEST
Match: SMESG000039067.1 (SMESG000039067.1)

HSP 1 Score: 924.85 bits (2389), Expect = 0.000e+0
Identity = 474/475 (99.79%), Postives = 475/475 (100.00%), Query Frame = 1 
Query:  181 NQKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKXXXXXXXXXXXXXXLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDN 1605
            +QKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKTSFTSDSDPSTSTPLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDN
Sbjct:   41 DQKFIYPNDFRKSLADGIVLCNLVNCLKPGAIKRINKISTTISGYDNLGKFLRCCEDDFGLSSLILFKLSDLEDLSEKLPSYQLDSEKRLERVLMCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSILESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENWREKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNSISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKTSFTSDSDPSTSTPLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNPFADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILVSKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPTECITLSLRRLKNDEEDEDFLCSDFSEALEDN 515
The following BLAST results are available for this feature:
BLAST of LIM domain only protein 7 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
LMO71.514e-1943.43LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646][more]
LMO76.035e-1943.43LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646][more]
LMO76.207e-1943.43LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646][more]
LMO77.968e-1943.43LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646][more]
LIMCH11.323e-1642.71LIM and calponin homology domains 1 [Source:HGNC S... [more]
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BLAST of LIM domain only protein 7 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3
Match NameE-valueIdentityDescription
lim-81.954e-1246.67LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q9... [more]
lim-82.043e-1246.67LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q9... [more]
lim-82.049e-1246.67LIM domain family [Source:UniProtKB/TrEMBL;Acc:Q9... [more]
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BLAST of LIM domain only protein 7 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
smash3.186e-1251.67gene:FBgn0263346 transcript:FBtr0308853[more]
smash4.581e-1251.67gene:FBgn0263346 transcript:FBtr0308855[more]
smash3.045e-1058.70gene:FBgn0263346 transcript:FBtr0308857[more]
Chd641.230e-730.61gene:FBgn0035499 transcript:FBtr0310531[more]
Chd641.239e-730.61gene:FBgn0035499 transcript:FBtr0073270[more]
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BLAST of LIM domain only protein 7 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo7b2.750e-1840.21LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242... [more]
CR788257.16.371e-1840.21pep chromosome:GRCz11:CHR_ALT_CTG1_1_37:34428368:3... [more]
lmo7b9.025e-1740.21LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242... [more]
lmo7b9.920e-1740.21LIM domain 7b [Source:ZFIN;Acc:ZDB-GENE-060825-242... [more]
lmo7a2.370e-1641.05LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74][more]
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BLAST of LIM domain only protein 7 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tom1l28.644e-1639.58target of myb1 like 2 membrane trafficking protein... [more]
tom1l29.689e-1639.58target of myb1 like 2 membrane trafficking protein... [more]
tom1l21.219e-1539.58target of myb1 like 2 membrane trafficking protein... [more]
tom1l21.280e-1539.58target of myb1 like 2 membrane trafficking protein... [more]
tom1l21.294e-1539.58target of myb1 like 2 membrane trafficking protein... [more]
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BLAST of LIM domain only protein 7 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Lmo71.069e-1944.00LIM domain only 7 [Source:MGI Symbol;Acc:MGI:13535... [more]
Limch11.673e-1642.71LIM and calponin homology domains 1 [Source:MGI Sy... [more]
Limch11.994e-1642.71LIM and calponin homology domains 1 [Source:MGI Sy... [more]
Limch12.027e-1642.71LIM and calponin homology domains 1 [Source:MGI Sy... [more]
Limch11.080e-1158.70LIM and calponin homology domains 1 [Source:MGI Sy... [more]
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BLAST of LIM domain only protein 7 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q8WWI1|LMO7_HUMAN4.211e-1843.43LIM domain only protein 7 OS=Homo sapiens OX=9606 ... [more]
sp|Q9UPQ0|LIMC1_HUMAN6.659e-1642.71LIM and calponin homology domains-containing prote... [more]
sp|Q3UH68|LIMC1_MOUSE1.170e-1542.71LIM and calponin homology domains-containing prote... [more]
sp|Q3KQW7|LIMC1_XENLA1.084e-1439.58LIM and calponin homology domains-containing prote... [more]
sp|Q15417|CNN3_HUMAN7.122e-731.19Calponin-3 OS=Homo sapiens OX=9606 GN=CNN3 PE=1 SV... [more]
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BLAST of LIM domain only protein 7 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3HGF68.402e-2242.40trichohyalin isoform X6 OS=Lingula unguis OX=7574 ... [more]
A0A1S3HEW01.268e-2142.40LIM and calponin homology domains-containing prote... [more]
A0A1S3HHU21.385e-2142.40LIM and calponin homology domains-containing prote... [more]
A0A1S3HGE91.402e-2142.40LIM and calponin homology domains-containing prote... [more]
A0A1S3HER71.411e-2142.40LIM and calponin homology domains-containing prote... [more]
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BLAST of LIM domain only protein 7 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000031649.17.745e-1838.78pep primary_assembly:Astyanax_mexicanus-2.0:12:770... [more]
lmo7a1.314e-1640.63LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74][more]
lmo7a1.322e-1640.63LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74][more]
lmo7a2.353e-1640.63LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74][more]
lmo7a2.390e-1640.63LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74][more]
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BLAST of LIM domain only protein 7 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of LIM domain only protein 7 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of LIM domain only protein 7 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of LIM domain only protein 7 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo7b6.042e-1842.86LIM domain only protein 7 [Source:NCBI gene;Acc:10... [more]
lmo7b7.152e-1842.86LIM domain only protein 7 [Source:NCBI gene;Acc:10... [more]
lmo7b7.375e-1842.86LIM domain only protein 7 [Source:NCBI gene;Acc:10... [more]
lmo7b8.250e-1842.86LIM domain only protein 7 [Source:NCBI gene;Acc:10... [more]
limch1b1.130e-1738.06LIM and calponin homology domains 1 [Source:NCBI g... [more]
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BLAST of LIM domain only protein 7 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000039067.10.000e+098.45SMESG000039067.1[more]
SMESG000039067.10.000e+099.79SMESG000039067.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014355 ID=SMED30014355|Name=LIM domain only protein 7|organism=Schmidtea mediterranea sexual|type=transcript|length=4324bp
CAAATTTAGAGTAATCAATCTAAAGAATAATTCAAAAATCTACTTTATAA
TTGCAAACTTTTTTATTTTGATGATAGATTTTAAGCAATTGAATGATTTA
GAAATTATTGCTATTAGCGAAGAAGAAAGTTTAATAAAGGAGCTACAACC
TGCTTTTAATTCTATTAGAAATTGGATAGAAATCAAAAATTTATATATCC
CAATGATTTTCGCAAATCGCTTGCCGATGGTATTGTGTTATGCAACCTTG
TCAATTGCCTAAAACCTGGAGCCATAAAAAGGATTAATAAAATCTCAACA
ACTATTTCTGGTTATGATAATCTCGGAAAATTTTTACGTTGTTGTGAAGA
TGATTTTGGCCTTAGTTCTTTGATTTTATTTAAATTATCAGACTTAGAAG
ATTTATCAGAAAAGCTACCGAGCTATCAACTCGATTCTGAGAAACGTTTG
GAAAGAGTGTTGATGTGCTTATTTCACTTAGCGAAATCTGTAGAAAATCA
TTTAACAACTGTAAAAATAGATTCGGCTCCCTTTAATATTCTCTTAAAAA
GTAACCATTTTCGGGAAATGAAAAAGAAAAAAGTTGTCACCAAGTCTGAA
GATTCGATTTTAGAATCTCCAGTTCCAGAGTTAATTCAAAAACAAATTCC
CAGTTATTTAGCTCATAAGGCTGAAGAAACATTGAAACAGACAAAAATAA
ATAATGATATTCTACACAAGTCTATGGAAAATGACGATTGGCAAGAGAGT
CTTGAAAATTGGAGAGAAAAACGTCGACAAGTTCTTTCGCAATCAATGGT
TGAAACTTCTACTGATGATTATACTAATGAGGACAGTAAAGATTTAGTAA
AGTTAAGAGAAAAGGCTCGTAAAATGAAACAACTCCGTGACCAGATCAAA
GATCAAAATTCTATCTCTTCAAACGATCAAATGGATTCTAAGTCGAATGT
TGCGGTTCCTGATATTGACGATGAGATGAAAGCAATGATTGAACGAGTTA
AAATGAAAAAGCTTGCCGAAGAACAGAAAAGACAATTTTCAGTTTCATCT
CCACTCAAGACATCATTCACATCAGACAGTGACCCAAGTACATCAACACC
TCTTGAAAAGTTAGAGGACGAATCCATAAGTGTATCAGAAAACAATGAAT
TAGACCGTTCTTTGTCCTGTGTTGACAACCAATTGCCAGTGGAAGTTAGT
AGAAACAATCCATTTGCCGATGATAAAATCCAAACTCTGAATAAACCTCT
AGAAAATAATAATGTGCGCCTGATACAAATCAAACTAAGTCAGGTTTCAA
AACAAAACAGTGATCAGTTGTGGGGTATGGAATTAATAAGTAAAGGCGGC
TCCATTTTGGTTTCCAAAGTTAAAATAGGAAGCAGCTCTGATGTCTGTGA
TGTACAAAAAGGGGATGAAATAGTTTCTATCAATTCAATAAATGTGGAAA
ATCAGTCAATTGAATACGCAAAATCGGTATTCAGTAAATGTGCGTTCTCT
ATTTCTCCAACAGAATGCATTACTTTGTCCTTGCGTCGACTAAAGAATGA
CGAGGAAGATGAAGATTTTCTTTGTAGTGATTTTTCAGAAGCCCTAGAAG
ACAATCTACATAATGTAGCAGATCGGGCGGAAGTGGAACCCAATTCTCAA
ACTCATTTAAAGGAATGTAATATTAATTCAATGGCCACTGTCGATATTGA
GGAAATAGGTCACATAAATATGAACCTGAAAAGTTTACAAAATTTCCCTA
ATATCATCAATGAAATTTCCGAAACAGCTAATAATAAATTGGAAAAAGCA
ACAACCACCTATGAAACTGTGGAAAACCGACGAAATTATGGAGAAGAATC
TTTATATTCTGTAAATAACATTTCTCATATGGATTCCGAAATCCCCGAGA
TCACAAATCGGGACACTAATGAGACAGATCGTGAATTTCAACTATCTGTT
CAAGCAAAAATCGCCAAATTCGAGTGTCAAAATGTTATGACAAATTCGTT
AAATTTAAATTCATCATTGAACATTTCGAAATCAAATCAAAATACCGAAT
TCGCTGTTAATAATTCAAAGTATGGACATAGAGCTAGTTGTGAAGGATTA
GTTTGGAATTCGGATAATGTCGTTGCTAAGGTTCCTGAAACAAATCATTC
TAGTATTTCGAATTTGTATCATTATTGGGAAACTGAAGCTCCGAAATCGT
CATCGTCTAATCCCAACCTTATCAATAAAAACTCATCGGTCCTCCAAACT
TCCATTCATTCTCTGGTCAATGAAAAGGATAGAGATGATAAATGTTTACT
AGAAACAGCTGAACTGAATTTAAGCACTTCCAATGTAAATGTTGTTCGCC
CGTGGAAAAATGGTCGTTCTTCTTGTAATTCAAGTACTTCCGATGATGTT
TCTGCACTAAATGAAACCGTTGAAATGTCTCAATATGGATCATGGAATAA
ATCTGTAAAGAGAAATCTAGAAAAATCACTTAACGACAATGAAAAAACAA
GTTCAAATCTTTGTTTAACTAAAGAATTGTCGTCGGTTACTTCAGATTTA
ATAACGATAGAGGATAAAGTTTTAGGATCAGAAATTAATCCCAGTACAAG
AACTAATGTATCCACTGGCATTCAAGCTAATATTCAAAGTCGACAACAGC
CGGTCTATACAACAATAACCACTGCGTTTGAAAGTCAATCTAGAAAATCG
TTGTCTAATTCTACATCGAAAGTTTCTGAGGTTGATACCTGCTCTGTTTC
CTCTTCAAAGTTCCATGGAAATATCGAATCTCTAATCGGAAATTTAACCC
CGGCTTCTGAAATGGGACAGCCAATAAAAAGTCTCCACCTATCATGGTTA
CCACAAAGTAACAAGAACGATATGAGTAAAGACTTGACATTAATAAGTCC
GTCAGTCGTGAGACAAGAAAACCAGCAAAATGAAGTAGACTTCTCCTCAA
CACGAACTAATGGTTTTACATTGGGTAGCCTTGAAAATAATGAAAAATCT
ATTGAAGTCGAAGTGTCTATTATTCCGAAATTGTTTCCCATGAAAAATAA
AACATTATTCTCTAAACCAGTTGATGAAAAGTATCGCAATCATAAGATCA
GTGATCCCATTCCAGTTACTCGATCACTCGATGATGACGAGACAGCATTG
AAATCTAGTTTCATAAAAGTGACTGATCTTGACGATATTATATCACCTGT
AAGGTCAAAACCGAATTTTTCCCGTCAACTTGATAATAACTCAGGGTCCC
CATCAAAAACGGGTGATATTATATACTCAGATATCACTAAGGAGGATGAA
GTTCACAATCAAACTCCTATATATCAGCATAATATAAGTTCCTCAGACCG
ACTTAGTACTGAGTTATTGGAATCAAATATTGATGTGGAACCAACAATTT
CCACTGTTCCCGTCCCAACTTTATTTAAAGGCAGCCATAATTCAGACAAT
ACGATATCAGTTGGTATGACTTTGTCCAAGTCAGAAAATTTTAATCCCAT
GAAAAACGAGTCAGTTTCTTCGACTAAAAAATCAAAAAACAGTCACTCTA
AGCCCAATGAATTGCAATACAAAAGATCATCAAGCTCCAAAGAAATCCGA
TATTCTCAACGAGAAAACCCTAATGATGCGGGGAAATCCAATATTAATTA
TCGTGATAACCCTAGTAGCAATACAACAAACTCCAGGAAGCGTTCTCCTT
CACAAGTAACATTTTCCGATAAAATACAAGATATAACTCAAACTAAAATT
CAAACAAAGACATTCTCTATTGAAAAATCCACAAAAACTACACCGATTTC
TTTCAGTAAAGAAAAGAAAAAATCTAAATCTCAGAATAAAAAATCTTCTC
AGCCTGAAATCAGTACAAAATGTAACAATTGCTTACAACCTGCAGGCTCT
GAAGATTTAATGGTGATTGAAGAATTGAATCTCCATTTCCATTTGAGATG
TTTCATTTGTAGTGAATGTAAAGTGCAATTGGGAGACGGAAAAACGGACA
CCGATGTTCGGATTCGGCGGTCGAAATTGCATTGCGCCATTTGTTATAAC
AAGAAATCCTCCAAGTCTAAAAATAAGAATTCAACAAATCGCCAACAGCC
CCAATCACAGTCAAACAGTATGTCAAATAAAGGTGGGCATGGTGATGGGC
ACAGTGTTTACATAACACCTGGTGGTAGCAACAATAATTGCACTGCAATA
AATAACATTTCTTCTCCATCATCTTTTATCGCTTCTTAATTTTCCCAGAT
TATAATTCCGCTATTTTGTTCATTGTGTGGTATATGCTTCATTTTTGTTG
GCAATGCAACTGCGATCTGATGAG
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protein sequence of SMED30014355-orf-1

>SMED30014355-orf-1 ID=SMED30014355-orf-1|Name=SMED30014355-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1259bp
MCLFHLAKSVENHLTTVKIDSAPFNILLKSNHFREMKKKKVVTKSEDSIL
ESPVPELIQKQIPSYLAHKAEETLKQTKINNDILHKSMENDDWQESLENW
REKRRQVLSQSMVETSTDDYTNEDSKDLVKLREKARKMKQLRDQIKDQNS
ISSNDQMDSKSNVAVPDIDDEMKAMIERVKMKKLAEEQKRQFSVSSPLKT
SFTSDSDPSTSTPLEKLEDESISVSENNELDRSLSCVDNQLPVEVSRNNP
FADDKIQTLNKPLENNNVRLIQIKLSQVSKQNSDQLWGMELISKGGSILV
SKVKIGSSSDVCDVQKGDEIVSINSINVENQSIEYAKSVFSKCAFSISPT
ECITLSLRRLKNDEEDEDFLCSDFSEALEDNLHNVADRAEVEPNSQTHLK
ECNINSMATVDIEEIGHINMNLKSLQNFPNIINEISETANNKLEKATTTY
ETVENRRNYGEESLYSVNNISHMDSEIPEITNRDTNETDREFQLSVQAKI
AKFECQNVMTNSLNLNSSLNISKSNQNTEFAVNNSKYGHRASCEGLVWNS
DNVVAKVPETNHSSISNLYHYWETEAPKSSSSNPNLINKNSSVLQTSIHS
LVNEKDRDDKCLLETAELNLSTSNVNVVRPWKNGRSSCNSSTSDDVSALN
ETVEMSQYGSWNKSVKRNLEKSLNDNEKTSSNLCLTKELSSVTSDLITIE
DKVLGSEINPSTRTNVSTGIQANIQSRQQPVYTTITTAFESQSRKSLSNS
TSKVSEVDTCSVSSSKFHGNIESLIGNLTPASEMGQPIKSLHLSWLPQSN
KNDMSKDLTLISPSVVRQENQQNEVDFSSTRTNGFTLGSLENNEKSIEVE
VSIIPKLFPMKNKTLFSKPVDEKYRNHKISDPIPVTRSLDDDETALKSSF
IKVTDLDDIISPVRSKPNFSRQLDNNSGSPSKTGDIIYSDITKEDEVHNQ
TPIYQHNISSSDRLSTELLESNIDVEPTISTVPVPTLFKGSHNSDNTISV
GMTLSKSENFNPMKNESVSSTKKSKNSHSKPNELQYKRSSSSKEIRYSQR
ENPNDAGKSNINYRDNPSSNTTNSRKRSPSQVTFSDKIQDITQTKIQTKT
FSIEKSTKTTPISFSKEKKKSKSQNKKSSQPEISTKCNNCLQPAGSEDLM
VIEELNLHFHLRCFICSECKVQLGDGKTDTDVRIRRSKLHCAICYNKKSS
KSKNKNSTNRQQPQSQSNSMSNKGGHGDGHSVYITPGGSNNNCTAINNIS
SPSSFIAS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR029980LIMCH1
IPR017972Cyt_P450_CS
IPR001715CH-domain
IPR001781Znf_LIM
IPR001478PDZ
Vocabulary: molecular function
TermDefinition
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0046872metal ion binding
Vocabulary: biological process
TermDefinition
GO:0055114oxidation-reduction process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..110
NoneNo IPR availableCOILSCoilCoilcoord: 128..151
NoneNo IPR availableCOILSCoilCoilcoord: 436..456
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 1130..1241
e-value: 2.8E-11
score: 45.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1021..1051
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1052..1089
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1107..1134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1003..1089
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1003..1020
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1200..1225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..160
NoneNo IPR availablePANTHERPTHR15551LIM DOMAIN ONLY 7coord: 1011..1197
NoneNo IPR availableCDDcd08368LIMcoord: 1137..1195
e-value: 2.29302E-7
score: 46.5419
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 282..358
e-value: 4.92512E-7
score: 46.7911
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 1136..1194
e-value: 1.9E-5
score: 34.1
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 1137..1198
e-value: 1.4E-5
score: 25.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 1137..1173
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 1135..1201
score: 11.573
IPR036034PDZ superfamilyGENE3DG3DSA:2.30.42.10coord: 276..348
e-value: 1.4E-7
score: 33.3
IPR036034PDZ superfamilySUPERFAMILYSSF50156PDZ domain-likecoord: 270..358
IPR029980LIM and calponin homology domains-containing protein 1PANTHERPTHR15551:SF3LIM AND CALPONIN HOMOLOGY DOMAINS-CONTAINING PROTEIN 1coord: 1011..1197
IPR001478PDZ domainPROSITEPS50106PDZcoord: 272..340
score: 9.511