SMED30014307
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014307 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Alignments
SMED30014307 aligns in the following genomic locations:
Homology
BLAST of SMED30014307 vs. TrEMBL
Match: A0A183VS77 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS3333 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 7.176e-23 Identity = 108/450 (24.00%), Postives = 194/450 (43.11%), Query Frame = 3 Query: 138 MYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDDAEKVLLKFDDEIEPETHDHYPKTLLQS----LDNGLC-----YQVELVGSWQNFLGR--------------KAGKVQCSSVFRSTMFVVFENESQIFRMTLSENGISN-----DSIWFPKFQ-----DSSIYPIEI-----KCSNEVIYVSGKINTSEDVT---QYLIVKYNMDENVLAYTRRYYYPKFDKFDVD-HDGNLIILSPQIDDEGLN-------------SQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSL------KKQSDDQKCPEYRLMCFRCCINKTNGD-KSQLRAALESSRWRMAGFSLGPLVVLD-DQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNL-----------IGMCSDGRDYAYLFTEHNVFRFRFQE 1265 M + + + + PVK+R + + R + IVS+Y+P ++ + L +DE + DH LL S +D L Y ++L+ S + + ++ K+ C + T+F+ E +F ++ +N ++ +SI+ +I+P+E+ K + V+YV G + SE VT +++ K++ +LA +R Y Y ++ VD +DG L++ P I++ G QI KL+ F R + IT+G + Y P YV + W S+ K+ +++Q P RL+ F + NG+ K R L + W A G + D D++L ID E L YI+W ++ P + +I+ P+S + +G+ AY ++F F F+ Sbjct: 16 MTGDENLDVVEQGIHPVKRRPFSKSLRSRLNHIVSMYIPGNNPVENRLDGNDE----SADH--AGLLSSNELKMDFSLTKDNDIYDIKLLYSSEKIIQSIMDNVKLSDKYSIGESMKITCLAADHKTIFIGLERLPYVFLISSEKNDTTSQKSGGNSIFKGYLHLHTPGIGNIFPVELCSHSTKPDHTVLYVVGTVQKSESVTVKQNWILAKFDTSGQLLARSRVYPYQRYSGLSVDTNDGQLLLACPSINESGSPYNNTTTNKCNDSPGQICKLTPGFERRIFSITMGKESVFYKPNYVTQETAGHCCWASVERFAQGKENTENQHQPTRRLLAFPG--RQPNGEVKQSARDWLHTYSWDFADLKPGRITAFDADRLLVIDSETGTLSYITWPSDQEKPSLYRITRPSSKPIRLLYSVYNNSQVGLSDAQTKVAYFVAGSSIFSFSFRH 457
BLAST of SMED30014307 vs. TrEMBL
Match: A0A0R3WN58 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS2183 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.180e-21 Identity = 110/428 (25.70%), Postives = 183/428 (42.76%), Query Frame = 3 Query: 132 QPMYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDDAEKVLL-----------KFDDEIEPETHDHYPKTLLQSLDN-------GLCYQV------ELVGSWQNFLGRKAGKVQCSSVFRSTM-----FVVFENESQIFRMTLSENGISNDSIWFP---------KFQDSSIYPIEI---KCSNEV--IYVSGKINTSEDVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVDHDGNLII--LSPQIDDEG---LNSQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQSDDQKCPEYRLMCFRCCINKTNGDKSQLRAA---LESSRWRMAGFSLGPLVVLDDQ-ILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCSDGR--DYAYLFTEHNVFRF 1253 +P+Y+ EI V P ++R + KDR + IVS+YVPN + + L DD +DH+ L L+N GLC+ V LV S N L A + S S M ++ F +S F E + N S+ P + + P ++ C NE YV G + +++ Y++D ++A TR+Y Y ++ DVD DGN+++ S IDD+ N+QI KL+ F R + +TL + Y P ++ + W S+ + + K R++ F + + +R+ L + W FS G + LD Q +L ID E +L I+W+E + +++++ P + + C AYL +E ++F F Sbjct: 8 EPVYR--EITEDAPMVVP-QRRPMVRSLKDRITNIVSMYVPNGSSHESPLFASKNSQLKHDLVDDNDVAHINDHFGLLSLGELENQVESGKSGLCHIVPFIDKGTLVTSILNELQNSAYTISPSDFVISCMATDSIYLYFGVQSLPFLFKF-EIALLNTSLERPYPVTKIHLKTAESVDLIPSKVCLKSCRNETSEFYVIGTAQLEASLI-HILACYSIDGRLIAQTRKYLYQRYLAIDVDTDGNILLGCTSRSIDDDANHPSNAQICKLTPHFERRIFSVTLRKGSTSYCPDWITRSCVQGQCWASVSRWDSETKRMVRRIVAFPGVQPECESEGEVVRSPKEWLHVTSWSFEVFSAGSVFALDSQRLLTIDAEQRSLAMITWTEGQKGVSLQRLTKPGARKIDHFCVSNTYPPVAYLASEGDIFTF 430
BLAST of SMED30014307 vs. TrEMBL
Match: C1LES2 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.385e-19 Identity = 104/437 (23.80%), Postives = 196/437 (44.85%), Query Frame = 3 Query: 147 NSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVP-NDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGL---------CYQVELVGSWQNFLG---RKAG-----------KVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQD---------SSIYPIEI-----KCSNEVIYVSGKINTSE--DVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVD-HDGNLIILSPQIDDEGLNS------QISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQ---SDD----QKCPEYRLMCFRCCINKTNGD-KSQLRAALESSRWRMAGFSLGPLVVLD-DQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCS----------DGRDYAYLFTEHNVFRFRF 1259 NS+I ++ PV++R + ++R ++IVS+Y+P N E L+ DD T DH LL S D+ L Y ++LV + R AG K+ + + ++ EN +F ++ + N + F+ +I P E+ K ++ +YV G I T D ++++ K++ +A +R Y Y ++ VD +D +L++ P I++ +S QI KL+ F R + IT+G++ Y P YV + W S++++ ++D ++ P RL+ F + +G+ K +R L + W A + D D++L +D + L YI+W+++E P++ +I+ P+S ++ +CS ++ AY +++ F F Sbjct: 23 NSQIIVEQGTIHPVRRRPFSKSLRNRLNQIVSMYIPGNIPIESRLVGIDD-----TTDH--TGLLSSNDSRLGFASSKDNELYDIKLVYPGDQLIKGVLRHAGVSDKLSRDELPKITSLAADHNAIYFGLENLPYVFLISAKSHDWKNQTFESDHFKGCLHLYSPGVGNILPHELCTHSTKSNHTFLYVVGTIQTDNINDEKKWILAKFDSSGQQIARSRIYSYQRYSGLSVDTNDNHLLLACPSINESVASSNVNSPGQICKLTPGFERRVFSITMGNESVFYKPNYVTQETAGHCCWASVERRHYSTEDAENIRRPPTRRLLAFPG--RQQSGELKQSVREWLHAYSWDFADLKPCRIAAFDADRLLVVDADNGTLSYITWAKHEEKPVLYRITRPSSKHIRLLCSTYNSKVMLSDSPKNIAYFVAGSSIYSFSF 450
BLAST of SMED30014307 vs. TrEMBL
Match: A0A4Z2DCZ5 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_002202 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.436e-19 Identity = 104/437 (23.80%), Postives = 196/437 (44.85%), Query Frame = 3 Query: 147 NSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVP-NDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGL---------CYQVELVGSWQNFLG---RKAG-----------KVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQD---------SSIYPIEI-----KCSNEVIYVSGKINTSE--DVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVD-HDGNLIILSPQIDDEGLNS------QISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQ---SDD----QKCPEYRLMCFRCCINKTNGD-KSQLRAALESSRWRMAGFSLGPLVVLD-DQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCS----------DGRDYAYLFTEHNVFRFRF 1259 NS+I ++ PV++R + ++R ++IVS+Y+P N E L+ DD T DH LL S D+ L Y ++LV + R AG K+ + + ++ EN +F ++ + N + F+ +I P E+ K ++ +YV G I T D ++++ K++ +A +R Y Y ++ VD +D +L++ P I++ +S QI KL+ F R + IT+G++ Y P YV + W S++++ ++D ++ P RL+ F + +G+ K +R L + W A + D D++L +D + L YI+W+++E P++ +I+ P+S ++ +CS ++ AY +++ F F Sbjct: 23 NSQIIVEQGTIHPVRRRPFSKSLRNRLNQIVSMYIPGNIPIESRLVGIDD-----TTDH--TGLLSSNDSRLGFASSKDNELYDIKLVYPGDQLIKGVLRHAGVSDKLSRDELPKITSLAADHNAIYFGLENLPYVFLISAKSHDWKNQTFESDHFKGCLHLYSPGVGNILPHELCTHSTKSNHTFLYVVGTIQTDNINDEKKWILAKFDSSGQQIARSRIYSYQRYSGLSVDTNDNHLLLACPSINESVASSNVNSPGQICKLTPGFERRVFSITMGNESVFYKPNYVTQETAGHCCWASVERRHYSTEDAENIRRPPTRRLLAFPG--RQQSGELKQSVREWLHAYSWDFADLKPCRIAAFDADRLLVVDADNGTLSYITWAKHEEKPVLYRITRPSSKHIRLLCSTYNSKVMLSDSPKNIAYFVAGSSIYSFSF 450
BLAST of SMED30014307 vs. TrEMBL
Match: A0A4Z2DJ09 (Uncharacterized protein OS=Schistosoma japonicum OX=6182 GN=EWB00_000432 PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.175e-19 Identity = 105/437 (24.03%), Postives = 197/437 (45.08%), Query Frame = 3 Query: 147 NSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVP-NDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGL---------CYQVELVGSWQNFLG---RKAG-----------KVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQD---------SSIYPIEI-----KCSNEVIYVSGKINTSE--DVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVD-HDGNLIILSPQIDD----EGLNS--QISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQ---SDD----QKCPEYRLMCFRCCINKTNGD-KSQLRAALESSRWRMAGFSLGPLVVLD-DQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCS----------DGRDYAYLFTEHNVFRFRF 1259 NS+I ++ PV++R + ++R ++IVS+Y+P N E L+ DD T DH LL S D+ L Y ++LV + R AG K+ + + ++ EN +F ++ + N + F+ +I P E+ K ++ +YV G I T D ++++ K++ +A +R Y Y ++ VD +D +L++ P I++ +NS QI KL+ F R + IT+G++ Y P YV + W S++++ ++D ++ P RL+ F + +G+ K +R L + W A + D D++L +D + L YI+W+++E P++ +I+ P+S ++ +CS ++ AY +++ F F Sbjct: 23 NSQIIVEQGTIHPVRRRPFSKSLRNRLNQIVSMYIPGNIPIESRLVGIDD-----TTDH--TGLLSSNDSRLGFASSKDNELYDIKLVYPGDQLIKGVLRHAGVSDKLSRDELPKITSLAADHNAIYFGLENLPYVFLISAKSHDWKNQTFESDHFKGCLHLYSPGVGNILPHELCTHSTKSNHTFLYVVGTIQTDNINDEKKWILAKFDSSGQQIARSRIYSYQRYSGLSVDTNDNHLLLACPSINELVATSNVNSPGQICKLTPGFERRVFSITMGNESVFYKPNYVTQETAGHCCWASVERRHYSTEDAENIRRPPTRRLLAFPG--RQQSGELKQSVREWLHAYSWDFADLKPCRIAAFDADRLLVVDADNGTLSYITWAKHEEKPVLYRITRPSSKHIRLLCSTYNSKVMLSDSPKNIAYFVAGSSIYSFSF 450
BLAST of SMED30014307 vs. Planmine SMEST
Match: SMESG000064621.1 (SMESG000064621.1) HSP 1 Score: 823.543 bits (2126), Expect = 0.000e+0 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 3 Query: 111 MNQEINYQPMYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGLCYQVELVGSWQNFLGRKAGKVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQDSSIYPIEIKCSNEVIYVSGKINTSEDVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVDHDGNLIILSPQIDDEGLNSQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQSDDQKCPEYRLMCFRCCINKTNGDKSQLRAALESSRWRMAGFSLGPLVVLDDQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCSDGRDYAYLFTEHNVFRFRFQEQLIKDSELLV 1295 MNQEINYQPMYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGLCYQVELVGSWQNFLGRKAGKVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQDSSIYPIEIKCSNEVIYVSGKINTSEDVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVDHDGNLIILSPQIDDEGLNSQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQSDDQKCPEYRLMCFRCCINKTNGDKSQLRAALESSRWRMAGFSLGPLVVLDDQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCSDGRDYAYLFTEHNVFRFRFQEQLIKDSELLV Sbjct: 1 MNQEINYQPMYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGLCYQVELVGSWQNFLGRKAGKVQCSSVFRSTMFVVFENESQIFRMTLSENGISNDSIWFPKFQDSSIYPIEIKCSNEVIYVSGKINTSEDVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVDHDGNLIILSPQIDDEGLNSQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQSDDQKCPEYRLMCFRCCINKTNGDKSQLRAALESSRWRMAGFSLGPLVVLDDQILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCSDGRDYAYLFTEHNVFRFRFQEQLIKDSELLV 395
BLAST of SMED30014307 vs. Planmine SMEST
Match: SMESG000073901.1 (SMESG000073901.1) HSP 1 Score: 357.836 bits (917), Expect = 8.613e-118 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 Query: 1378 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRXXXXXXXXXXTEQSSKDTSFQIFSLDKILIEKSIHTERIYGINPLKTIHDQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS 1941 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRNLSSSNSNNLTEQSSKDTSFQIFSLDKILIEKSIHTERIYGINPLKTIHDQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS Sbjct: 207 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRNLSSSNSNNLTEQSSKDTSFQIFSLDKILIEKSIHTERIYGINPLKTIHDQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS 394
BLAST of SMED30014307 vs. Planmine SMEST
Match: SMESG000073901.1 (SMESG000073901.1) HSP 1 Score: 313.153 bits (801), Expect = 9.121e-101 Identity = 172/188 (91.49%), Postives = 172/188 (91.49%), Query Frame = 1 Query: 1378 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRXXXXXXXXXXTEQSSKDTSFQIFSLDKILIEKSIHTERIYGINPLKTIHDQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS 1941 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRNLSSSNSNNLTEQSSKDTSFQIFSLDKILIEKS DQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS Sbjct: 207 KPASLKTRRGYFYSSQRIRRPELFMNFGKDVNENCKTICKKRNLSSSNSNNLTEQSSKDTSFQIFSLDKILIEKS----------------DQCVNLNRIGVHIRLFTMVFYNFIFMYSFNAYKVTTSYVMLLIVALGFFVKGIFRLFYLKKFPTKIFILFISIYISQILNYMVVPGLEKVTLAGVLS 378
BLAST of SMED30014307 vs. Planmine SMEST
Match: SMESG000062352.1 (SMESG000062352.1) HSP 1 Score: 135.961 bits (341), Expect = 1.909e-34 Identity = 95/343 (27.70%), Postives = 164/343 (47.81%), Query Frame = 3 Query: 252 PNDDAEKVLLKFDDEIEPETHDHYPKTLLQSLDNGLCYQVELVGSWQNFLGRKAGKVQCSSVFRSTMFVVFENESQIFRMTLSE--NGISNDSIWFPKFQDSSIYPIEIKCSNEV-IYVSG----KINTSEDVTQYLIVKYNMDENVLAYTRRYYYPKFDKFDVDHDGNLIILSPQIDDEGLNSQISKLSYEFNSRQYYITLGDQQSKYTPLYVAAHGTSNRTWVSLKKQSDDQKCPEYRLMCFRCCINKTNGDK-SQLRAALESSRWRMAGFSLGPLVVLDDQ-ILAIDEELHNLCYISWSENEGHPIVKKISSPNSPNLIGMCSDGRDYAYLFTEHNVFRF 1253 PN D E L +D+ +P K + ++ + Y V+ V + ++QC SV + +F+ N IF ++ E + + W P +D +YP++IK + IY+S +IN E +L++KY+ VL T++Y +P+F FD D DG +I++S +D + +SKL+ +F+ Y SKYTP + G + ++W+ K +D+K P RL+ F C + + + + +S W F+ + ++ +IDE+ L +SW EN P V +IS+ P +CS+ AYLFT H+++ F Sbjct: 60 PNLDYELGQLDINDKSQP-------KMISDQINGDIFYTVQRVSKLSDIFLNPV-EIQCCSVIGNKLFIGIVNCIDIFILSFEEVDKKLHVERTWNPILRDLPLYPLQIKADRDGNIYLSAYYYPRINQDEKC--HLLIKYDCQFKVLIKTKKYCFPRFSDFDFDSDGCIIVISSSKEDNTV-YHVSKLTEDFSRFCYKFNFSSSTSKYTPHRIICLGIAEKSWIVAYKDENDEKEP--RLISFNSCACRDKDESMNSFMTKINTSAWSSGSFNPREICKFTNKYTFSIDEKTKALYCLSWDENNNCPDVAQISNIGEPCFQNICSNSNGTAYLFTHHSIYEF 389 The following BLAST results are available for this feature:
BLAST of SMED30014307 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30014307 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30014307 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30014307 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30014307 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30014307 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014307 ID=SMED30014307|Name=SMED30014307|organism=Schmidtea mediterranea sexual|type=transcript|length=1992bpback to top protein sequence of SMED30014307-orf-1 >SMED30014307-orf-1 ID=SMED30014307-orf-1|Name=SMED30014307-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=396bp MNQEINYQPMYQNSEIQSANKSVTPVKKRNEKGNFKDRFSKIVSVYVPNDback to top protein sequence of SMED30014307-orf-2 >SMED30014307-orf-2 ID=SMED30014307-orf-2|Name=SMED30014307-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=165bp MNFGKDVNENCKTICKKRNLSSSNSNNLTEQSSKDTSFQIFSLDKILIEKback to top Annotated Terms
The following terms have been associated with this transcript:
|