BED-type domain-containing protein

Overview
NameBED-type domain-containing protein
Smed IDSMED30014260
Length (bp)757
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of BED-type domain-containing protein (SMED30014260) t-SNE clustered cells

Violin plots show distribution of expression levels for BED-type domain-containing protein (SMED30014260) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of BED-type domain-containing protein (SMED30014260) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for BED-type domain-containing protein (SMED30014260) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30014260

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30014260SMESG000026662.1 SMESG000003902.1 SmedASXL_016578SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220])

HSP 1 Score: 53.1434 bits (126), Expect = 1.498e-7
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 1
Query:  112 HIDALIEEITMRFKDLKELVIP-ACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVM 414
            H+D L  EI+  F +L E  IP A    PF  + E V + ++E F  L N    +  F+      FWV+     P+L + V   ++ FP++YL E  FS+++
Sbjct:  617 HLDMLASEISWYFPNLPE--IPFALARSPFSVKAEDVPETAQEDFTRLTNSDAARADFSTMPVTQFWVKCLQSYPVLSEMVLRLLLPFPTTYLCETGFSSLL 716          
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: J9M392 (Uncharacterized protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.945e-29
Identity = 60/144 (41.67%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 KLKLYKNNICQQEYHQSPLQQLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNKG 432
            KL L K  I ++E++      + + +L DSDLE YC H+++L + ++ RFKD+ +L+IP  ++ PFL+++++V    +E+ +E+K+  E KI F    Y+ FW++ +   P LWKEV+L IMAFPS+YLVEK FSAV     K 
Sbjct:   99 KLSLLKEKIGRREFNNFSNLSISQQIL-DSDLEIYCAHLESLKDNMSTRFKDINDLIIPEWVLNPFLTDIQNVQPLIQEELLEVKHNEEAKIDFKHNGYELFWLKQKTMYPQLWKEVELLIMAFPSTYLVEKGFSAVQQLLTKS 241          
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A085N2W8 (BED-type domain-containing protein OS=Trichuris suis OX=68888 GN=M514_23962 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.001e-18
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 KLKLYKNNICQQEYHQSP-LQQLKEDM-LKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRN--PLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            KL L+K N+ + E++Q P L +LKE + + DSD+E YC H+D L ++ T RF+D+  + IP  +I PF     +V  +++E+ IEL+   E+K  F + DY AFW++ +     P L    +  ++AFPSSYLVE+ FS V     K
Sbjct:  382 KLTLFKENLGRGEFYQFPNLLELKEKLKVHDSDVEAYCEHLDMLHQDFTARFEDIIGMEIPTWVIDPF-RIAGNVEPSAEEELIELQTNEELKATF-KGDYQAFWMQRKVGGLYPRLSDIARKLLIAFPSSYLVERGFSVVTDLLRK 526          
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A085M9I1 (Uncharacterized protein OS=Trichuris suis OX=68888 GN=M513_05144 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.038e-18
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 KLKLYKNNICQQEYHQSP-LQQLKEDM-LKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRN--PLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            KL L+K N+ + E++Q P L +LKE + + DSD+E YC H+D L ++ T RF+D+  + IP  +I PF     +V  +++E+ IEL+   E+K  F + DY AFW++ +     P L    +  ++AFPSSYLVE+ FS V     K
Sbjct:  412 KLTLFKENLGRGEFYQFPNLLELKEKLKVHDSDVEAYCEHLDMLHQDFTARFEDIIGMEIPTWVIDPF-RIAGNVEPSAEEELIELQTNEELKATF-KGDYQAFWMQRKVGGLYPRLSDIARKLLIAFPSSYLVERGFSVVTDLLRK 556          
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: A0A085MNZ0 (BED-type domain-containing protein OS=Trichuris suis OX=68888 GN=M513_00099 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.078e-18
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 KLKLYKNNICQQEYHQSP-LQQLKEDM-LKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRN--PLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            KL L+K N+ + E++Q P L +LKE + + DSD+E YC H+D L ++ T RF+D+  + IP  +I PF     +V  +++E+ IEL+   E+K  F + DY AFW++ +     P L    +  ++AFPSSYLVE+ FS V     K
Sbjct:  382 KLTLFKENLGRGEFYQFPNLLELKEKLKVHDSDVEAYCEHLDMLHQDFTARFEDIIGMEIPTWVIDPF-RIAGNVEPSAEEELIELQTNEELKATF-KGDYQAFWMQRKVGGLYPRLSDIARKLLIAFPSSYLVERGFSVVTDLLRK 526          
BLAST of BED-type domain-containing protein vs. TrEMBL
Match: V8NDI9 (SCAN domain-containing protein 3 (Fragment) OS=Ophiophagus hannah OX=8665 GN=SCAND3 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.143e-18
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   25 ICQQEYHQSPLQQLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRNPLLWKEVKLPIMAFPSSYL 387
            + +QE +Q P     E  L+  DL+ +CC++  L E++  RF DL  L +P  ++ PF ++        +E   +LK  CE +  F    Y AFWV+ R+ +P+LW+EVKL ++AFPS+Y 
Sbjct:    1 MSRQELYQFP-SFGNEYQLQAEDLDIFCCYLKQLKEDMETRFYDLINLEVPTWVLNPFTADFAQPHPKLQEPLTDLKYDCEAQSHFQSYSYKAFWVKMRNTHPILWEEVKLLLLAFPSTYF 120          
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000057314.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:4224188:4227217:-1 gene:ENSAMXG00000029268.1 transcript:ENSAMXT00000057314.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 48.9062 bits (115), Expect = 2.373e-6
Identity = 38/150 (25.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:    1 KLKLYKNNICQQEYHQSPLQ-QLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIP-ACIIIPFLSEVESVSQ-NSKEQFIELKNGCEVKIIFNQCDYDAFWV-RFRHRNPLLWKEVKLPIMAFP--SSYLVEKDFSAVMHFFNKG 432
            K++  +N + + +    PL  Q    +L D+    + CH+D L EE+  RF D+ ELV   A ++ PFL++ + V    ++++ +++K+       +++  +  FW+ +     P L       I   P  ++YL E  FSA++    K 
Sbjct:  378 KVEFRRNKLKKGDLQHFPLLLQQSGGVLPDALTTQFACHMDRLQEEMHSRFSDIHELVSKDAWVMDPFLAKEDDVEHLQAEDELMDIKSNSVCMRFYDEHGFKQFWLAKGPGVAPRLANHADHQISGLPFATTYLSETAFSALVTIKTKA 527          
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000005651.1 (SMESG000005651.1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.203e-21
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   76 MLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQ 240
            M+KDSDLETYC HIDALIE++T+RFK LKELVI A +I PFLS+VESVSQN KEQ
Sbjct:    1 MIKDSDLETYCSHIDALIEDMTIRFKGLKELVILAWVINPFLSDVESVSQNLKEQ 55          
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000042414.1 (SMESG000042414.1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.827e-16
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   55 LQQLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDY--DAFWVRFRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            L  +++D +   D+  Y  H+  L E+  +R++D++ L +PA II PFL ++     + +E+ I LK G + +++FN   Y   +     R +NP L    +  ++ FPSSY VE  FSA+ +   K
Sbjct:  338 LSVIEKDCISSEDITLYTTHLKNLKEDFNVRYRDMENLCVPARIIEPFLCDLTRFDISVQEELITLKEGVQAQVLFNTYGYAKSSTIKVIREKNPHLQMNSEPLLLTFPSSYFVEAGFSAINNLLRK 464          
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000024660.1 (SMESG000024660.1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.524e-14
Identity = 44/147 (29.93%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    4 LKLYKNNICQQEYHQSPLQQLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRN-----PLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            +K+ K NI + ++ Q     L +   +++D+ TY  H++AL  +   RF+D+  +VIP  II P+  ++E  +   +E+  E+    E+K+ F +  Y  FW++   +N     P+L    +  +++FPSSYL+E+  SAV +   K
Sbjct:   27 VKIIKQNIGRGKFSQ--FSNLSQTNCQENDVSTYVQHLNALYSDFETRFEDVLTMVIPPWIINPY-GDIEETNVIIQEELTEISTNGELKVKF-KHGYQHFWLK---KNIPITYPVLRNIARKFLISFPSSYLMERGISAVTNLLTK 166          
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000002046.1 (SMESG000002046.1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.957e-14
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  142 MRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVRFRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            +RFKD++ + IP   I PF ++  +   + +E  ++L+   E K +F +   + FW++  +    L  E+++ IMAFP+SYLVEK+FS V     K
Sbjct:    3 LRFKDVENIHIPDWAINPFSADSTNAPSHIQEILVDLQVNIEAKHLFERSSLEEFWIKISNTFQRLGMEMRVLIMAFPTSYLVEKNFSVVSQILTK 98          
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Match: SMESG000026945.1 (SMESG000026945.1)

HSP 1 Score: 60.077 bits (144), Expect = 5.028e-11
Identity = 39/140 (27.86%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   16 KNNICQQEYHQSPLQQLKEDMLKDSDLETYCCHIDALIEEITMRFKDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYDAFWVR--FRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNK 429
            K NI + ++ + P   L +   ++ ++ TY   ++AL  +    F+D+  +VIP  II P+  +++      +E+  ++    E+ + F    Y  FW++       P+LW   +  +++FPSSYLVE+ FSAV +   K
Sbjct:    2 KQNIGRGKFSEFP--NLSQTNCQEDNVSTYVQLLNALYSDFETWFEDVVTIVIPPWIINPY-GDIDETIVIIQEKLTKISTNEELMVQFKHG-YQHFWLQKIIPVTYPVLWNIARKFLISFPSSYLVERGFSAVTNLLTK 137          
The following BLAST results are available for this feature:
BLAST of BED-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Zbed51.498e-732.35zinc finger, BED type containing 5 [Source:MGI Sym... [more]
back to top
BLAST of BED-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
J9M3922.945e-2941.67Uncharacterized protein OS=Acyrthosiphon pisum OX=... [more]
A0A085N2W84.001e-1839.46BED-type domain-containing protein OS=Trichuris su... [more]
A0A085M9I14.038e-1839.46Uncharacterized protein OS=Trichuris suis OX=68888... [more]
A0A085MNZ04.078e-1839.46BED-type domain-containing protein OS=Trichuris su... [more]
V8NDI97.143e-1836.36SCAN domain-containing protein 3 (Fragment) OS=Oph... [more]
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000057314.12.373e-625.33pep primary_assembly:Astyanax_mexicanus-2.0:1:4224... [more]
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of BED-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000005651.17.203e-2178.18SMESG000005651.1[more]
SMESG000042414.18.827e-1631.50SMESG000042414.1[more]
SMESG000024660.11.524e-1429.93SMESG000024660.1[more]
SMESG000002046.18.957e-1434.38SMESG000002046.1[more]
SMESG000026945.15.028e-1127.86SMESG000026945.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014260 ID=SMED30014260|Name=BED-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=757bp
AAACTCAAATTATATAAAAATAATATTTGTCAGCAAGAATACCATCAGTC
TCCTTTACAGCAATTAAAAGAAGATATGCTCAAGGATTCGGATTTGGAAA
CTTACTGTTGCCATATTGACGCTCTTATTGAAGAGATAACAATGCGATTC
AAAGACTTGAAGGAACTTGTAATACCAGCATGTATAATTATTCCATTTTT
ATCAGAGGTAGAAAGTGTCAGTCAAAATTCAAAAGAGCAGTTTATTGAGC
TAAAAAATGGCTGTGAGGTCAAAATAATATTCAATCAATGTGATTATGAT
GCTTTTTGGGTTCGCTTTCGCCATCGAAACCCTCTTTTGTGGAAAGAAGT
AAAATTACCGATTATGGCATTTCCTTCATCGTATTTAGTGGAAAAGGATT
TTAGCGCAGTAATGCATTTTTTTAATAAAGGGTTAGGGTCCCCATTGTTT
TATTATTATCATTATCATTACTGCATAATTATTACTATTATTATACTTAT
TATTATTATCATTAATATCATCATCCTTGCAATGACGATGCTGTAATATG
AATATTTAAACTGATTATATGGCATAGTTACTGTGAGAGTGCTGCTGATG
TTCGTGTAAATATGTGCCTTGATTTATTCGTTCTCTTGAGAATTTATTTT
TATTATTTTTCAATTAGAAAATTTCTGGATTTGAACTAAGACTCAGTTGG
TGATGCGTTATTCTGGCTTATGTTATGTTATGTTTGAAATATATTTTTGA
ATTCTGG
back to top

protein sequence of SMED30014260-orf-1

>SMED30014260-orf-1 ID=SMED30014260-orf-1|Name=SMED30014260-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=182bp
KLKLYKNNICQQEYHQSPLQQLKEDMLKDSDLETYCCHIDALIEEITMRF
KDLKELVIPACIIIPFLSEVESVSQNSKEQFIELKNGCEVKIIFNQCDYD
AFWVRFRHRNPLLWKEVKLPIMAFPSSYLVEKDFSAVMHFFNKGLGSPLF
YYYHYHYCIIITIIILIIIIINIIILAMTML*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 104..123