39S ribosomal protein L16

Overview
Name39S ribosomal protein L16
Smed IDSMED30014204
Length (bp)1067
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 39S ribosomal protein L16 (SMED30014204) t-SNE clustered cells

Violin plots show distribution of expression levels for 39S ribosomal protein L16 (SMED30014204) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 39S ribosomal protein L16 (SMED30014204) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 39S ribosomal protein L16 (SMED30014204) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30014204

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30014204SMESG000062742.1 SmedASXL_019076SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30014204SMESG000062742.1 dd_Smed_v4_2977_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Human
Match: MRPL16 (mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476])

HSP 1 Score: 127.102 bits (318), Expect = 6.702e-34
Identity = 74/220 (33.64%), Postives = 114/220 (51.82%), Query Frame = 1 
Query:  250 IPQFLDDIEFPPEKRKL---------PQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            +P F +D+  P EK KL         P++ ++P N+  I         RGP     +     F + A  GG L +GH E +R  +NR++    MF IWR+ AP+KP     +G+ +G GKG +DHY+TPVK  R+VVE+GG   ++E    ++Q+   +PF ++ VS   L    K ++  E +N NP+TF+     N L  +  LS        KY+G+
Sbjct:   36 VPSF-EDVSIP-EKPKLRFIERAPLVPKVRREPKNLSDI---------RGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Human
Match: MRPL16 (mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476])

HSP 1 Score: 83.1889 bits (204), Expect = 2.124e-19
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  463 IRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSR 714
            +R  +NR++    MF IWR+ AP+KP     +G+ +G GKG +DHY+TPVK  R+VVE+GG   ++E    ++Q+   +PF ++
Sbjct:    2 MRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 85
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Celegans
Match: mrpl-16 (Mitochondrial Ribosomal Protein, Large [Source:UniProtKB/TrEMBL;Acc:Q22140])

HSP 1 Score: 127.487 bits (319), Expect = 1.278e-34
Identity = 73/207 (35.27%), Postives = 108/207 (52.17%), Query Frame = 1 
Query:  244 FNIPQFLDDIEFPPEKR-KLPQLPKQP-----TNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQ 846
            ++ P   +++ FPP  + KLP +P +P        K    TK     RG E +H +LI++Q+GL A SGG +     + I+  +N+N+  D  F +WR+DAPW P+     G  LG GKG +  Y+TPV+ +RI++E+GG+I   EA   +  L +   F   FVSE ML    K  +     N N F +    K N  NC  +LS 
Sbjct:   25 YSFPVTYENVRFPPNGQLKLPVMPAEPFYDAEKGEKKYKSTKRMIEARGVEEVHTELIHEQYGLAAVSGGFIDSDDFKFIQDRINKNLI-DNQFSVWRVDAPWLPRTKKAQGTRLGGGKGSIQKYVTPVRANRIILEVGGHITEIEAKAFLLYLCERFSFPVEFVSETMLAERRKKAEEERAMNKNGFNWGKVIKYNMQNCNSWLSS 230
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Fly
Match: mRpL16 (gene:FBgn0023519 transcript:FBtr0332579)

HSP 1 Score: 158.688 bits (400), Expect = 2.076e-46
Identity = 81/230 (35.22%), Postives = 127/230 (55.22%), Query Frame = 1 
Query:  187 KQLISSKRLYIRFKDWRMNFNIPQFLDDIEFP--PEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTA-KYYGR 867
            KQ ++S  + I        F  P    ++E P  P+ R + + P+ P NI+P    K     RGPE++HN L++KQ+ + A  GG L +GH E +R  + R ++ + MF  WR+ APW+P    G G  +G GKG +DHY+TP+K  R++VE+ G   + E  + + Q+   +PF++  VS+EML  +   E+     N NPFT  Y  +NN   C  +LS    K++G+
Sbjct:   12 KQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRVIERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRVAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGK 241
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Fly
Match: mRpL16 (gene:FBgn0023519 transcript:FBtr0070314)

HSP 1 Score: 158.688 bits (400), Expect = 2.076e-46
Identity = 81/230 (35.22%), Postives = 127/230 (55.22%), Query Frame = 1 
Query:  187 KQLISSKRLYIRFKDWRMNFNIPQFLDDIEFP--PEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTA-KYYGR 867
            KQ ++S  + I        F  P    ++E P  P+ R + + P+ P NI+P    K     RGPE++HN L++KQ+ + A  GG L +GH E +R  + R ++ + MF  WR+ APW+P    G G  +G GKG +DHY+TP+K  R++VE+ G   + E  + + Q+   +PF++  VS+EML  +   E+     N NPFT  Y  +NN   C  +LS    K++G+
Sbjct:   12 KQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRVIERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRVAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGK 241
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Zebrafish
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:ZFIN;Acc:ZDB-GENE-041122-1])

HSP 1 Score: 124.02 bits (310), Expect = 3.050e-33
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHL--YRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
             + IP    D+E P EK KL  + K P N+K     +MK L   +GP     K    Q+G+ A  GG L +GH+E +R  +NR+I    MF +WR   P KP     +G  +G GKG +DHY+TP+K  R+V+E+GG +   +   ++ Q+ K +PF ++ VS E L    K       +N NP++F    ++N L  +  LS
Sbjct:    3 TYEIPPDFSDVELP-EKPKLKFMEKVP-NLKQA-KKEMKRLRDIQGPSRTATKFSQGQYGILALGGGFLHWGHIEMMRLTINRSIDPSSMFAVWRFQPPHKPITRKSLGQRMGGGKGAIDHYVTPIKCGRLVLEMGGQLELVQVEAMLKQVAKKLPFPAKVVSRESLALMYKEHAERVSNNQNPWSFQKIVRSNMLGIRKVLS 202
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Zebrafish
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:ZFIN;Acc:ZDB-GENE-041122-1])

HSP 1 Score: 124.405 bits (311), Expect = 4.516e-33
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHL--YRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
             + IP    D+E P EK KL  + K P N+K     +MK L   +GP     K    Q+G+ A  GG L +GH+E +R  +NR+I    MF +WR   P KP     +G  +G GKG +DHY+TP+K  R+V+E+GG +   +   ++ Q+ K +PF ++ VS E L    K       +N NP++F    ++N L  +  LS
Sbjct:   35 TYEIPPDFSDVELP-EKPKLKFMEKVP-NLKQA-KKEMKRLRDIQGPSRTATKFSQGQYGILALGGGFLHWGHIEMMRLTINRSIDPSSMFAVWRFQPPHKPITRKSLGQRMGGGKGAIDHYVTPIKCGRLVLEMGGQLELVQVEAMLKQVAKKLPFPAKVVSRESLALMYKEHAERVSNNQNPWSFQKIVRSNMLGIRKVLS 234
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Zebrafish
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:ZFIN;Acc:ZDB-GENE-041122-1])

HSP 1 Score: 124.405 bits (311), Expect = 4.516e-33
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHL--YRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
             + IP    D+E P EK KL  + K P N+K     +MK L   +GP     K    Q+G+ A  GG L +GH+E +R  +NR+I    MF +WR   P KP     +G  +G GKG +DHY+TP+K  R+V+E+GG +   +   ++ Q+ K +PF ++ VS E L    K       +N NP++F    ++N L  +  LS
Sbjct:   35 TYEIPPDFSDVELP-EKPKLKFMEKVP-NLKQA-KKEMKRLRDIQGPSRTATKFSQGQYGILALGGGFLHWGHIEMMRLTINRSIDPSSMFAVWRFQPPHKPITRKSLGQRMGGGKGAIDHYVTPIKCGRLVLEMGGQLELVQVEAMLKQVAKKLPFPAKVVSRESLALMYKEHAERVSNNQNPWSFQKIVRSNMLGIRKVLS 234
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Xenopus
Match: gtpbp6 (GTP binding protein 6 (putative) [Source:Xenbase;Acc:XB-GENE-967567])

HSP 1 Score: 122.094 bits (305), Expect = 3.627e-32
Identity = 65/196 (33.16%), Postives = 108/196 (55.10%), Query Frame = 1 
Query:  298 LPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGRK 870
            L ++ K+P N+K I         RGP     +    ++G+ A  GG L +GH E +R  LNR +S    F  W +  P KP    G+G  +G GKG VDHY+TPVK D++++E+GG   +QE   +++Q+ K +PF ++ VS++ L    +  +  E++N NP+TF      N + C+ ++S        +Y+G++
Sbjct:   44 LVKVKKEPKNLKDI---------RGPAKEGREFEEGEYGIVALGGGYLHWGHYEMMRLTLNRTLSPRTTFSRWLVAPPHKPVTRKGLGQRMGGGKGAVDHYVTPVKADQLILEVGGRCEFQEVQPILSQVAKKLPFPAQAVSKDSLKKVRQEAEEKELNNQNPWTFTRLATRNMMGCRKWISAFDVQNKGRYWGKR 230
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Xenopus
Match: gtpbp6 (GTP binding protein 6 (putative) [Source:Xenbase;Acc:XB-GENE-967567])

HSP 1 Score: 121.324 bits (303), Expect = 4.790e-32
Identity = 65/196 (33.16%), Postives = 108/196 (55.10%), Query Frame = 1 
Query:  298 LPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGRK 870
            L ++ K+P N+K I         RGP     +    ++G+ A  GG L +GH E +R  LNR +S    F  W +  P KP    G+G  +G GKG VDHY+TPVK D++++E+GG   +QE   +++Q+ K +PF ++ VS++ L    +  +  E++N NP+TF      N + C+ ++S        +Y+G++
Sbjct:   38 LVKVKKEPKNLKDI---------RGPAKEGREFEEGEYGIVALGGGYLHWGHYEMMRLTLNRTLSPRTTFSRWLVAPPHKPVTRKGLGQRMGGGKGAVDHYVTPVKADQLILEVGGRCEFQEVQPILSQVAKKLPFPAQAVSKDSLKKVRQEAEEKELNNQNPWTFTRLATRNMMGCRKWISAFDVQNKGRYWGKR 224
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Mouse
Match: Mrpl16 (mitochondrial ribosomal protein L16 [Source:MGI Symbol;Acc:MGI:2137219])

HSP 1 Score: 132.109 bits (331), Expect = 6.543e-36
Identity = 72/214 (33.64%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            N +IP+    ++F      +P++ ++P N+K I         RGP           F + A  GG L +GH E +R  +NR +    MF IWR+ AP+KP    G+G  +G GKG +DHY+TPVKT  +VVE+GG   ++E   ++NQ+   +PF ++ VS + L    + ++  E++N NP+TF++    N    + FLS     Q  +Y+G+
Sbjct:   41 NVSIPE-RSKLKFVERVPLVPKVRREPKNLKDI---------RGPSTEATDFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGGGKGAIDHYVTPVKTGCLVVEMGGRCEFEEVKGILNQVAHKLPFPAKAVSRKTLERMHQNQRERELNNQNPWTFEHIATANMFGIRKFLSPYDLTQKGRYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Match: sp|Q99N93|RM16_MOUSE (39S ribosomal protein L16, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl16 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.577e-35
Identity = 72/214 (33.64%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            N +IP+    ++F      +P++ ++P N+K I         RGP           F + A  GG L +GH E +R  +NR +    MF IWR+ AP+KP    G+G  +G GKG +DHY+TPVKT  +VVE+GG   ++E   ++NQ+   +PF ++ VS + L    + ++  E++N NP+TF++    N    + FLS     Q  +Y+G+
Sbjct:   41 NVSIPE-RSKLKFVERVPLVPKVRREPKNLKDI---------RGPSTEATDFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGGGKGAIDHYVTPVKTGCLVVEMGGRCEFEEVKGILNQVAHKLPFPAKAVSRKTLERMHQNQRERELNNQNPWTFEHIATANMFGIRKFLSPYDLTQKGRYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Match: sp|Q5M818|RM16_RAT (39S ribosomal protein L16, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl16 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.246e-35
Identity = 72/214 (33.64%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            N +IP+    ++F      +P++ ++P N+K I         RGP           F + A  GG L +GH E +R  +NR +    MF IWR+ AP+KP    G+G  +G GKG +DHY+TPVKT  ++VE+GG   ++E  +++NQ+   +PF ++ VS + L    + +K  E++N NP+TF+     N    + FLS     Q  +Y+G+
Sbjct:   41 NVSIPE-RSKLKFVERVPLVPKVRREPKNLKDI---------RGPSAEATDFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGGGKGAIDHYVTPVKTGCLIVEMGGRCEFEEVKRVLNQVAHKLPFPAKAVSRKTLEKMHQNQKERELNNQNPWTFERIATANMFGIRKFLSPYDLTQKGRYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Match: sp|Q5R7L3|RM16_PONAB (39S ribosomal protein L16, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL16 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.219e-33
Identity = 74/220 (33.64%), Postives = 114/220 (51.82%), Query Frame = 1 
Query:  250 IPQFLDDIEFPPEKRKL---------PQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            +P F +D+  P EK KL         P++ ++P N+  I         RGP     +     F + A  GG L +GH E +R  +NR++    MF IWR+ AP+KP     +G+ +G GKG +DHY+TPVK  R+VVE+GG   ++E    ++Q+   +PF ++ VS   L    K ++  E +N NP+TF+     N L  +  LS        KY+G+
Sbjct:   36 VPSF-EDVSIP-EKPKLRFIERAPLVPKVRREPKNLSDI---------RGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Match: sp|Q9NX20|RM16_HUMAN (39S ribosomal protein L16, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL16 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.219e-33
Identity = 74/220 (33.64%), Postives = 114/220 (51.82%), Query Frame = 1 
Query:  250 IPQFLDDIEFPPEKRKL---------PQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            +P F +D+  P EK KL         P++ ++P N+  I         RGP     +     F + A  GG L +GH E +R  +NR++    MF IWR+ AP+KP     +G+ +G GKG +DHY+TPVK  R+VVE+GG   ++E    ++Q+   +PF ++ VS   L    K ++  E +N NP+TF+     N L  +  LS        KY+G+
Sbjct:   36 VPSF-EDVSIP-EKPKLRFIERAPLVPKVRREPKNLSDI---------RGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Match: sp|Q3T0J3|RM16_BOVIN (39S ribosomal protein L16, mitochondrial OS=Bos taurus OX=9913 GN=MRPL16 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.926e-33
Identity = 74/220 (33.64%), Postives = 115/220 (52.27%), Query Frame = 1 
Query:  250 IPQFLDDIEFPPEKRKL---------PQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS-----QTAKYYGR 867
            +P F +D+  P EK KL         P++ ++P N++ I         RGP     +     F + A  GG L +GH E +R  +NR +    MF +WR+ AP+K     G+G  +G GKG +DHY+TPVK  R++VE+GG   +QE   ++NQ+   +PF ++ VS E L    K ++  E +N NP+TF+     N L  +  LS        +Y+G+
Sbjct:   36 VPTF-EDVSIP-EKPKLRFVERAPLVPKVRREPKNLRDI---------RGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFALWRVPAPFKAITRKGMGQRMGGGKGAIDHYVTPVKAGRLIVEVGGRCEFQEVQGILNQVAHKLPFPAKAVSRETLEKIQKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHRGRYWGK 244
[Close]
BLAST of 39S ribosomal protein L16 vs. TrEMBL
Match: A0A183TIP7 (Ribosomal_L16 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS16345 PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.559e-59
Identity = 91/205 (44.39%), Postives = 131/205 (63.90%), Query Frame = 1 
Query:  244 FNIPQFLDDIEFPPEKRKLPQLPKQPTNI----KPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPF-TFDYCYKNNFLNCQDFLS 843
            F +   LD + FPP++RKL  L + P       + + YT+  +  RGPE + N LI+ Q+G+QA  GGEL  GHLE IR ++NR I E +MF IWR+  PWKPK    +G  +G GK  + HY+TPV+ DRI+VE+GGY++W+EA +++ ++  +MPF++RFVS+ +L  E KIE FI   N+NPF         N+  C+ FLS
Sbjct:   41 FKVKDELDSVAFPPDRRKLHPLQRTPATAGVSERSVKYTRRHYDLRGPETVENTLIHSQYGIQALEGGELKIGHLELIRLNINRAIDEKRMFAIWRVPGPWKPKTQQSLGKRMGGGKADIHHYVTPVRADRIIVEVGGYLDWREAHRILGRIAAVMPFRARFVSQNLLDTELKIEAFIAEQNVNPFYPPTKAMLKNYAGCRHFLS 245
[Close]
BLAST of 39S ribosomal protein L16 vs. TrEMBL
Match: A0A267D9H5 (Ribosomal_L16 domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006296g1 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.630e-59
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 1 
Query:  232 WRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPIL--------YTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRK 870
            WR+N+     L + E P ++R+LP  PK PT+    L        YT+ + ++RGPEL+HNKLI+KQFG+QA   G +   H E IR  LNR +  D+MF +WR+DAPW   Y    G TLG GK     Y +PVK +RI++ELGG ++WQEAF+++ Q+   +PFK+RFVS+EML  E + ++++   N+NPF FD+  K+N  N +  L+  A  +GR+
Sbjct:   36 WRVNWKPKPALSEAEVPRDQRRLPIRPKVPTSNAGSLVSPGAKWHYTQSRAIFRGPELVHNKLIHKQFGVQALEAGVMLHNHFETIRMSLNRKLDLDRMFAVWRVDAPWMAGYKRPPGLTLGGGKRDPKFYKSPVKDERIILELGGNLDWQEAFRMLRQMAGYLPFKARFVSQEMLDFEQRYDQYVSEVNVNPFDFDFVRKHNLCNVERHLTPYAIKHGRR 256
[Close]
BLAST of 39S ribosomal protein L16 vs. TrEMBL
Match: A0A267DYC2 (Ribosomal_L16 domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006296g3 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.027e-58
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 1 
Query:  232 WRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPIL--------YTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRK 870
            WR+N+     L + E P ++R+LP  PK PT+    L        YT+ + ++RGPEL+HNKLI+KQFG+QA   G +   H E IR  LNR +  D+MF +WR+DAPW   Y    G TLG GK     Y +PVK +RI++ELGG ++WQEAF+++ Q+   +PFK+RFVS+EML  E + ++++   N+NPF FD+  K+N  N +  L+  A  +GR+
Sbjct:   35 WRVNWKPKPALSEAEVPRDQRRLPIRPKVPTSNAGSLVSPGAKWHYTQSRAIFRGPELVHNKLIHKQFGVQALEAGVMLHNHFETIRMSLNRKLDLDRMFAVWRVDAPWMAGYKRPPGLTLGGGKRDPKFYKSPVKDERIILELGGNLDWQEAFRMLRQMAGYLPFKARFVSQEMLDFEQRYDQYVSEVNVNPFDFDFVRKHNLCNVERHLTPYAIKHGRR 255
[Close]
BLAST of 39S ribosomal protein L16 vs. TrEMBL
Match: A0A267E3H2 (Ribosomal_L16 domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig006296g2 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.068e-58
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 1 
Query:  232 WRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPIL--------YTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRK 870
            WR+N+     L + E P ++R+LP  PK PT+    L        YT+ + ++RGPEL+HNKLI+KQFG+QA   G +   H E IR  LNR +  D+MF +WR+DAPW   Y    G TLG GK     Y +PVK +RI++ELGG ++WQEAF+++ Q+   +PFK+RFVS+EML  E + ++++   N+NPF FD+  K+N  N +  L+  A  +GR+
Sbjct:   37 WRVNWKPKPALSEAEVPRDQRRLPIRPKVPTSNAGSLVSPGAKWHYTQSRAIFRGPELVHNKLIHKQFGVQALEAGVMLHNHFETIRMSLNRKLDLDRMFAVWRVDAPWMAGYKRPPGLTLGGGKRDPKFYKSPVKDERIILELGGNLDWQEAFRMLRQMAGYLPFKARFVSQEMLDFEQRYDQYVSEVNVNPFDFDFVRKHNLCNVERHLTPYAIKHGRR 257
[Close]
BLAST of 39S ribosomal protein L16 vs. TrEMBL
Match: A0A1I8IES4 (Ribosomal_L16 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.092e-58
Identity = 96/221 (43.44%), Postives = 140/221 (63.35%), Query Frame = 1 
Query:  232 WRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPIL--------YTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRK 870
            WR+N+     L + E P ++R+LP  PK PT+    L        YT+ + ++RGPEL+HNKLI+KQFG+QA   G +   H E IR  LNR +  D+MF +WR+DAPW   Y    G TLG GK     Y +PVK +RI++ELGG ++WQEAF+++ Q+   +PFK+RFVS+EML  E + ++++   N+NPF FD+  K+N  N +  L+  A  +GR+
Sbjct:   42 WRVNWKPKPALSEAEVPRDQRRLPIRPKVPTSNAGSLVSPGAKWHYTQSRAIFRGPELVHNKLIHKQFGVQALEAGVMLHNHFETIRMSLNRKLDLDRMFAVWRVDAPWMAGYKRPPGLTLGGGKRDPKFYKSPVKDERIILELGGNLDWQEAFRMLRQMAGYLPFKARFVSQEMLDFEQRYDQYVSEVNVNPFDFDFVRKHNLCNVERHLTPYAIKHGRR 262
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Cavefish
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:NCBI gene;Acc:103043681])

HSP 1 Score: 130.954 bits (328), Expect = 1.247e-35
Identity = 77/228 (33.77%), Postives = 120/228 (52.63%), Query Frame = 1 
Query:  166 SFKSVNVKQLISSKRLYIRFKDWRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEML--IHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
            + +SV+   L+  + L I     +  + +PQ    +  P EK KL  L K P   K     K     +GP        Y Q+ + A  GG L +GHLE +R  +NR +     F  WR+ AP+KP    G+G  +G GKG +D Y+TPVK  R++VE+GG I   E   ++NQ+ + +PF ++ +S+E L  +H+ + EK  E +N NP+TF    ++N L  +  +S
Sbjct:   12 TCRSVDCSALLLQQHLKILSAGLK-TYELPQDYSGVVIP-EKPKLKFLNKVPNFKKAKKEMKRLRDIQGPAKGATSFTYGQYAIVAMGGGYLEWGHLEMMRLTINRQLDPSTTFATWRVSAPYKPITRKGLGQRMGGGKGAIDFYVTPVKCGRLIVEVGGRIELGEVEGVLNQVARKLPFPAKVMSKESLAAMHQEQAEK--EANNQNPWTFQRIARSNMLGLRRVIS 235
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Cavefish
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:NCBI gene;Acc:103043681])

HSP 1 Score: 129.028 bits (323), Expect = 5.095e-35
Identity = 72/203 (35.47%), Postives = 109/203 (53.69%), Query Frame = 1 
Query:  241 NFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEML--IHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
             + +PQ    +  P EK KL  L K P   K     K     +GP        Y Q+ + A  GG L +GHLE +R  +NR +     F  WR+ AP+KP    G+G  +G GKG +D Y+TPVK  R++VE+GG I   E   ++NQ+ + +PF ++ +S+E L  +H+ + EK  E +N NP+TF    ++N L  +  +S
Sbjct:   24 TYELPQDYSGVVIP-EKPKLKFLNKVPNFKKAKKEMKRLRDIQGPAKGATSFTYGQYAIVAMGGGYLEWGHLEMMRLTINRQLDPSTTFATWRVSAPYKPITRKGLGQRMGGGKGAIDFYVTPVKCGRLIVEVGGRIELGEVEGVLNQVARKLPFPAKVMSKESLAAMHQEQAEK--EANNQNPWTFQRIARSNMLGLRRVIS 223
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Sea Lamprey
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:ZFIN;Acc:ZDB-GENE-041122-1])

HSP 1 Score: 132.109 bits (331), Expect = 1.425e-36
Identity = 76/208 (36.54%), Postives = 111/208 (53.37%), Query Frame = 1 
Query:  244 FNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQ-TAKYYG 864
            F  P+  DD+  P  K KL  + K P   K   +TK     RGP   +      +FG+ A  GG L +GH+E +R  +NR +    MF  WR+ AP+KP    G+G  +G GKG +DHY+TPVK  ++VVE+GG   + EA   + ++   +PF ++ VS E L    K E++   +N NP+TF     NN L  +  LS    +Y+G
Sbjct:   48 FPQPEKFDDVVIP-TKNKLKFVSKVPNYKKARKWTKQLSDIRGPARGNTSFTNGKFGIVALGGGYLHWGHMEMMRLAINRKMDSKNMFARWRVRAPYKPLTRKGLGQRMGGGKGAIDHYVTPVKYGQLVVEVGGRAEFTEAEGWLVEMANKLPFPAKAVSSEQLQEMQKTEEWRMENNENPWTFKRIVDNNMLGLRFTLSPYDIRYFG 254
[Close]
BLAST of 39S ribosomal protein L16 vs. Ensembl Medaka
Match: mrpl16 (mitochondrial ribosomal protein L16 [Source:NCBI gene;Acc:101174575])

HSP 1 Score: 121.324 bits (303), Expect = 6.203e-32
Identity = 66/187 (35.29%), Postives = 98/187 (52.41%), Query Frame = 1 
Query:  283 PEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLS 843
            P K KL  L K P   K     K     +GP    N     Q+ + A  GG L +GH E +R  +NR +     F  WR++AP+KP    G+G  +G GKG +DHY+TPV+  R++VELGG +   E   ++ ++ K +PF ++ +S E L    K+   +E +N NP+TF    + N L  +  LS
Sbjct:   52 PAKPKLKFLNKVPNLKKAKKEMKKLRDIQGPAKAANAFTVGQYAIVAMGGGYLHWGHFEMMRLTINRKMDARTTFARWRVNAPYKPVTRKGLGQRMGGGKGAIDHYVTPVRYGRLIVELGGKVELGEVESVLTEVAKKLPFPAKVMSREDLEALKKVHADMEQNNQNPWTFKQIVQGNMLGIRKVLS 238
[Close]
BLAST of 39S ribosomal protein L16 vs. Planmine SMEST
Match: SMESG000062742.1 (SMESG000062742.1)

HSP 1 Score: 508.449 bits (1308), Expect = 0.000e+0
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 
Query:  145 MISFNFQSFKSVNVKQLISSKRLYIRFKDWRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRKHKQ 879
            MISFNFQSFKSVNVKQLISSKRLYIRFKDWRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRKHKQ
Sbjct:    1 MISFNFQSFKSVNVKQLISSKRLYIRFKDWRMNFNIPQFLDDIEFPPEKRKLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELAFGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVDHYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHEAKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRKHKQ 245
The following BLAST results are available for this feature:
BLAST of 39S ribosomal protein L16 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
MRPL166.702e-3433.64mitochondrial ribosomal protein L16 [Source:HGNC S... [more]
MRPL162.124e-1940.48mitochondrial ribosomal protein L16 [Source:HGNC S... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl-161.278e-3435.27Mitochondrial Ribosomal Protein, Large [Source:Un... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mRpL162.076e-4635.22gene:FBgn0023519 transcript:FBtr0332579[more]
mRpL162.076e-4635.22gene:FBgn0023519 transcript:FBtr0070314[more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
mrpl163.050e-3335.47mitochondrial ribosomal protein L16 [Source:ZFIN;A... [more]
mrpl164.516e-3335.47mitochondrial ribosomal protein L16 [Source:ZFIN;A... [more]
mrpl164.516e-3335.47mitochondrial ribosomal protein L16 [Source:ZFIN;A... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
gtpbp63.627e-3233.16GTP binding protein 6 (putative) [Source:Xenbase;A... [more]
gtpbp64.790e-3233.16GTP binding protein 6 (putative) [Source:Xenbase;A... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Mrpl166.543e-3633.64mitochondrial ribosomal protein L16 [Source:MGI Sy... [more]
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BLAST of 39S ribosomal protein L16 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q99N93|RM16_MOUSE4.577e-3533.6439S ribosomal protein L16, mitochondrial OS=Mus mu... [more]
sp|Q5M818|RM16_RAT5.246e-3533.6439S ribosomal protein L16, mitochondrial OS=Rattus... [more]
sp|Q5R7L3|RM16_PONAB3.219e-3333.6439S ribosomal protein L16, mitochondrial OS=Pongo ... [more]
sp|Q9NX20|RM16_HUMAN3.219e-3333.6439S ribosomal protein L16, mitochondrial OS=Homo s... [more]
sp|Q3T0J3|RM16_BOVIN3.926e-3333.6439S ribosomal protein L16, mitochondrial OS=Bos ta... [more]
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BLAST of 39S ribosomal protein L16 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183TIP75.559e-5944.39Ribosomal_L16 domain-containing protein OS=Schisto... [more]
A0A267D9H58.630e-5943.44Ribosomal_L16 domain-containing protein (Fragment)... [more]
A0A267DYC21.027e-5843.44Ribosomal_L16 domain-containing protein (Fragment)... [more]
A0A267E3H21.068e-5843.44Ribosomal_L16 domain-containing protein (Fragment)... [more]
A0A1I8IES41.092e-5843.44Ribosomal_L16 domain-containing protein OS=Macrost... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrpl161.247e-3533.77mitochondrial ribosomal protein L16 [Source:NCBI g... [more]
mrpl165.095e-3535.47mitochondrial ribosomal protein L16 [Source:NCBI g... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl161.425e-3636.54mitochondrial ribosomal protein L16 [Source:ZFIN;A... [more]
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BLAST of 39S ribosomal protein L16 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 39S ribosomal protein L16 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of 39S ribosomal protein L16 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrpl166.203e-3235.29mitochondrial ribosomal protein L16 [Source:NCBI g... [more]
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BLAST of 39S ribosomal protein L16 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000062742.10.000e+0100.00SMESG000062742.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014204 ID=SMED30014204|Name=39S ribosomal protein L16|organism=Schmidtea mediterranea sexual|type=transcript|length=1067bp
TTCAAAAACTAAATATATTATAAATTAATTTAGTTATAAAATCTTTGCCT
TTTAATAAAATTTGCTAAATTCCCTAATTATCAAAATATTATTTTGAAAT
TTAGCATTGATTTTAAGAACTCAATGACTTAAACTTCTTATAGGATGATA
TCGTTTAATTTCCAATCGTTCAAATCAGTAAATGTTAAGCAGCTTATTAG
TTCTAAAAGATTGTACATCCGATTCAAAGATTGGCGTATGAATTTCAATA
TACCTCAATTTCTAGATGATATTGAATTTCCTCCTGAAAAAAGGAAATTA
CCACAACTGCCAAAACAACCCACGAACATTAAACCAATTTTATATACCAA
AATGAAGCATTTATACAGGGGTCCTGAATTAATCCATAATAAATTAATCT
ACAAGCAATTTGGGTTGCAGGCTTGTAGTGGTGGTGAGCTAGCATTCGGT
CACCTTGAGGCAATACGTGGTCATTTGAATAGAAATATTAGTGAAGATAA
AATGTTCGGAATTTGGAGAATTGATGCACCATGGAAACCAAAATATAGTC
ACGGTATTGGAAATACTCTTGGTCAAGGAAAAGGCAAAGTAGATCACTAT
ATCACTCCCGTAAAAACAGATAGGATCGTTGTTGAATTAGGCGGATATAT
AAATTGGCAGGAAGCATTTAAGTTGATCAATCAGCTTGTAAAGCTGATGC
CATTCAAATCGAGATTCGTGTCGGAAGAAATGCTGATTCATGAAGCGAAA
ATTGAAAAGTTCATAGAAATTCACAATATCAATCCATTTACGTTTGATTA
TTGTTATAAAAATAATTTTCTGAATTGCCAAGATTTTCTTTCCCAGACAG
CCAAATATTACGGAAGGAAGCATAAACAATAAATGTTTTCTAGACTTTTC
TCTTTTTCAAATTATTGATTTTATTATTCTATTGCACTACAATTATTGAT
TTTATTATTATTCTATTGCACAACAGAACGCAGATGAGATTTTCTCATAA
TTAAAAAAATTGTTTACTGAATCTAAGAGCGACATAATAAATGATTTTGC
GATGCAATTATTTATAT
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protein sequence of SMED30014204-orf-1

>SMED30014204-orf-1 ID=SMED30014204-orf-1|Name=SMED30014204-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=246bp
MISFNFQSFKSVNVKQLISSKRLYIRFKDWRMNFNIPQFLDDIEFPPEKR
KLPQLPKQPTNIKPILYTKMKHLYRGPELIHNKLIYKQFGLQACSGGELA
FGHLEAIRGHLNRNISEDKMFGIWRIDAPWKPKYSHGIGNTLGQGKGKVD
HYITPVKTDRIVVELGGYINWQEAFKLINQLVKLMPFKSRFVSEEMLIHE
AKIEKFIEIHNINPFTFDYCYKNNFLNCQDFLSQTAKYYGRKHKQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR036920Ribosomal_L10e/L16_sf
IPR000114Ribosomal_L16
IPR016180Ribosomal_L10e/L16
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 67..192
e-value: 3.1E-21
score: 75.8
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 82..192
e-value: 5.14374E-20
score: 80.2283
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3DG3DSA:3.90.1170.10coord: 57..240
e-value: 2.7E-32
score: 114.1
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILYSSF54686Ribosomal protein L16p/L10ecoord: 70..196
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 57..198
NoneNo IPR availablePANTHERPTHR12220:SF1339S RIBOSOMAL PROTEIN L16, MITOCHONDRIALcoord: 57..198