LIM homeobox 1b
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30014138 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of LIM homeobox 1b vs. Ensembl Human
Match: LHX1 (LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6593]) HSP 1 Score: 148.288 bits (373), Expect = 5.313e-39 Identity = 93/255 (36.47%), Postives = 129/255 (50.59%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Human
Match: LHX1 (LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6593]) HSP 1 Score: 148.288 bits (373), Expect = 5.313e-39 Identity = 93/255 (36.47%), Postives = 129/255 (50.59%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Human
Match: LHX5 (LIM homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14216]) HSP 1 Score: 141.354 bits (355), Expect = 1.473e-36 Identity = 94/259 (36.29%), Postives = 139/259 (53.67%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDL---VSEIDPSVD---ETYCSDN-DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C L+ KCF + + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY ++ + L ++S +S+ RS S +L D L E D S ET ++N +++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARS-KVFHLNCFTCMVCNKQLSTGEELYVID-ENKFVCKDDY----------------LSSSSLKEGSLNS---------------VSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Human
Match: LMX1B (LIM homeobox transcription factor 1 beta [Source:HGNC Symbol;Acc:HGNC:6654]) HSP 1 Score: 117.087 bits (292), Expect = 4.766e-28 Identity = 81/280 (28.93%), Postives = 132/280 (47.14%), Query Frame = 1 Query: 187 IKLEIASTNPEV----VLLKMTVP---ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 IK+E + P VLL P +C C +PI+D+F+ R+ + SWH++CL+C C LT+ C+ D + C +DY + KCS C I P++ V+ ++H CF C C+++L GD + ++C+ DY K + + S + E++ + +S G++ ++ S +D R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 28 IKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALEC-VYHLGCFCCCVCERQLRKGDEFVLKE--GQLLCKGDY-----------------EKEKDLLSSVSPDESD-------------SVKSEDEDGDM-----KPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 269
BLAST of LIM homeobox 1b vs. Ensembl Human
Match: LMX1B (LIM homeobox transcription factor 1 beta [Source:HGNC Symbol;Acc:HGNC:6654]) HSP 1 Score: 117.472 bits (293), Expect = 5.164e-28 Identity = 81/280 (28.93%), Postives = 132/280 (47.14%), Query Frame = 1 Query: 187 IKLEIASTNPEV----VLLKMTVP---ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 IK+E + P VLL P +C C +PI+D+F+ R+ + SWH++CL+C C LT+ C+ D + C +DY + KCS C I P++ V+ ++H CF C C+++L GD + ++C+ DY K + + S + E++ + +S G++ ++ S +D R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 28 IKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALEC-VYHLGCFCCCVCERQLRKGDEFVLKE--GQLLCKGDY-----------------EKEKDLLSSVSPDESD-------------SVKSEDEDGDM-----KPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 269
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Match: lin-11 (pep chromosome:WBcel235:I:10248256:10255327:1 gene:WBGene00003000.1 transcript:ZC247.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lin-11) HSP 1 Score: 133.265 bits (334), Expect = 5.456e-34 Identity = 86/261 (32.95%), Postives = 123/261 (47.13%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSC---------EIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+++ + WH CLRC C ++ CF D LC D+SR+ ++C+ C G + D V +FH CF+C+ C + L +GD+ Y G+ VCQ D+ + K +T S +R S+ D+ + + DE D + C +RR PRTTIKA QL++LK F+ TPKP+R +RE+LA TGL+MRVIQVWFQN Sbjct: 68 CAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSRDGLILCKTDFSRRYSQRCAGCDGKLEKEDLVRRARD-KVFHIRCFQCSVCQRLLDTGDQLYIME-GNRFVCQSDFQTAT-----------------------------------KTSTPTSIHRPVSNGSECNSDVEEDNVDACDEVGLDDGEGDCGKDNSDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQVWFQN 291
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Match: mec-3 (Mechanosensory protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P09088]) HSP 1 Score: 110.153 bits (274), Expect = 1.843e-26 Identity = 80/253 (31.62%), Postives = 114/253 (45.06%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXX-XGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C CN+ I D++I R+ + S+H+ C++C C L KCF + C + Y + K + P+D V + +FH C C+ C + L G++ + C Y DD N I S +D + N + I ++ S D + +C D+ + ++RR PRTTIK +QLD L FS TPKPS+ R KLA TGLSMRVIQVWFQN Sbjct: 29 CNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMSHYPPQM-----DD------NAPGAIGSAVDIPSCSTENPIAPYP-IDESFSSAFQVKKEVDAYGYNFEHYSFSDFCDDDSRM--LKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 267
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Match: mec-3 (Mechanosensory protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P09088]) HSP 1 Score: 97.0561 bits (240), Expect = 2.868e-22 Identity = 73/234 (31.20%), Postives = 102/234 (43.59%), Query Frame = 1 Query: 307 SWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXX-XGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 S+H+ C++C C L KCF + C + Y + K + P+D V + +FH C C+ C + L G++ + C Y DD N I S +D + N + I ++ S D + +C D+ + ++RR PRTTIK +QLD L FS TPKPS+ R KLA TGLSMRVIQVWFQN Sbjct: 5 SYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMSHYPPQM-----DD------NAPGAIGSAVDIPSCSTENPIAPYP-IDESFSSAFQVKKEVDAYGYNFEHYSFSDFCDDDSRM--LKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 224
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Match: mec-3 (Mechanosensory protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P09088]) HSP 1 Score: 97.0561 bits (240), Expect = 3.718e-22 Identity = 73/239 (30.54%), Postives = 105/239 (43.93%), Query Frame = 1 Query: 292 RIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXX-XGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 ++ + S+H+ C++C C L KCF + C + Y + K + P+D V + +FH C C+ C + L G++ + C Y DD N I S +D + N + I ++ S D + +C D+ + ++RR PRTTIK +QLD L FS TPKPS+ R KLA TGLSMRVIQVWFQN Sbjct: 26 QMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHRCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMSHYPPQM-----DD------NAPGAIGSAVDIPSCSTENPIAPYP-IDESFSSAFQVKKEVDAYGYNFEHYSFSDFCDDDSRM--LKRRGPRTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQVWFQN 250
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Match: lim-6 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:G4RV72]) HSP 1 Score: 95.5153 bits (236), Expect = 1.720e-21 Identity = 75/258 (29.07%), Postives = 112/258 (43.41%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTS--KCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTP---RTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C I D++I R+ + S+H+ CLRC+ C L+S KCF C D+ K+C +C + P+D +++ +H CF C C + GD Y+ + + C+ DY S I N+++ +S DP ++E S EI R+TP RT + A Q K F + KPSR++RE+LA TGLS+RV+QVWFQN Sbjct: 41 LCSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQMLYGKRCRRCMTLLLPTD-IVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVFD--GEVFCRNDYQS------------------------------------------ICNFQT-----------ISNPDPLMEEVVRS------EIHRKTPKRPRTILNAQQRRQFKTAFERSSKPSRKVREQLANETGLSVRVVQVWFQN 236
BLAST of LIM homeobox 1b vs. Ensembl Fly
Match: Lim1 (gene:FBgn0026411 transcript:FBtr0071279) HSP 1 Score: 140.969 bits (354), Expect = 4.533e-36 Identity = 101/276 (36.59%), Postives = 134/276 (48.55%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDY----------NSLKHELFGDDSNC------EQINKTELIFSDI-----DSQENNKGNV---FHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C CNKPI DKF+ + + +WH C+RC +C LT KCF +++ C D+ R+ KCS C I PSD V +FH NCF C C ++L +G++ Y + +C+ DY NSL L G S + T L + DS G +T N S G+L D D + D + S +RR PRTTIKA QL+ LK F+ TPKP+R +RE+LA+ TGL MRVIQVWFQN Sbjct: 27 CAGCNKPILDKFLLNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRD-KVFHLNCFTCCICRKQLSTGEQLYVLD-DNKFICKDDYLLGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGS---KRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQN 297
BLAST of LIM homeobox 1b vs. Ensembl Fly
Match: CG4328 (gene:FBgn0036274 transcript:FBtr0301071) HSP 1 Score: 103.99 bits (258), Expect = 2.308e-23 Identity = 71/276 (25.72%), Postives = 114/276 (41.30%), Query Frame = 1 Query: 178 ALFIKLEIASTNPEVVLLKMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 + ++L +A +P++ C C +PI D++I R+ ++S+H+ CL+C CS L C+ + + C DY R + G +D+++ ++FH CF C C L G++Y + C+FDY L G D EL +D + K R RT + Q + KA+F ++PKP R++RE LA+ TGLS+R++QVWFQN Sbjct: 182 GMGMELGLAMASPQLSQ-------CAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVHSCYAREGKLYCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQ--GQLFCRFDYEKEVEMLQGYD-----FYGDELFPPKLDGRRGPK-------------------------------------------------RPRT---ILNTQQRRAFKASFEVSPKPCRKVRENLAKDTGLSLRIVQVWFQN 391
BLAST of LIM homeobox 1b vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0073155) HSP 1 Score: 89.3521 bits (220), Expect = 4.378e-20 Identity = 75/261 (28.74%), Postives = 101/261 (38.70%), Query Frame = 1 Query: 229 LKMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSK--CFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +K + C C +PI+D+F + SWH CLRC C C L + CF + + C DYS+ KCSKC I SD V L +FH CF C+ C ++L +G+++ L D C+ + S E G+ +HK T + RTT QL L+A F I P Q E++A TGLS RV QVWFQN Sbjct: 1 MKTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRAREL-VFHLACFACDQCGRQLSTGEQF--------------------ALMDDRVLCKAHYLETVEGGTTSSDEGCDGDGYHKSKT------------------------------------------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQN 198
BLAST of LIM homeobox 1b vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0330071) HSP 1 Score: 90.1225 bits (222), Expect = 7.718e-20 Identity = 75/261 (28.74%), Postives = 101/261 (38.70%), Query Frame = 1 Query: 229 LKMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSK--CFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +K + C C +PI+D+F + SWH CLRC C C L + CF + + C DYS+ KCSKC I SD V L +FH CF C+ C ++L +G+++ L D C+ + S E G+ +HK T + RTT QL L+A F I P Q E++A TGLS RV QVWFQN Sbjct: 1 MKTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRAREL-VFHLACFACDQCGRQLSTGEQF--------------------ALMDDRVLCKAHYLETVEGGTTSSDEGCDGDGYHKSKT------------------------------------------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQN 198
BLAST of LIM homeobox 1b vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0073156) HSP 1 Score: 90.1225 bits (222), Expect = 8.036e-20 Identity = 75/261 (28.74%), Postives = 101/261 (38.70%), Query Frame = 1 Query: 229 LKMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSK--CFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +K + C C +PI+D+F + SWH CLRC C C L + CF + + C DYS+ KCSKC I SD V L +FH CF C+ C ++L +G+++ L D C+ + S E G+ +HK T + RTT QL L+A F I P Q E++A TGLS RV QVWFQN Sbjct: 1 MKTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGAKCSKCCRGISASDWVRRAREL-VFHLACFACDQCGRQLSTGEQF--------------------ALMDDRVLCKAHYLETVEGGTTSSDEGCDGDGYHKSKT------------------------------------------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQN 198
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Match: lhx1a (LIM homeobox 1a [Source:NCBI gene;Acc:30463]) HSP 1 Score: 148.288 bits (373), Expect = 3.741e-39 Identity = 93/252 (36.90%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I P+D V S +FH NCF C C+++L +G+ Y + VC+ DY S + G DSN + DSQ+ + +V I+N + + N ++D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIIDE-NKFVCKDDYLSNTN---GKDSNLLSVTACSDPSLSPDSQDQLQDDVK---DAEIANLSDKETGNN------------------ENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 229
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Match: lhx5 (LIM homeobox 5 [Source:NCBI gene;Acc:30465]) HSP 1 Score: 144.436 bits (363), Expect = 6.989e-38 Identity = 97/261 (37.16%), Postives = 136/261 (52.11%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDND---------KSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C+C LT KCF D + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY S S +++N +S+ RS S +L D + + D + SD D SC +RR PRTTIKA QL++LKA F TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFRRFGTKCAGCLQGISPSDLVRRARS-KVFHLNCFTCMVCNKQLSTGEELYVIDE-NKFVCKEDYLSA--------SAIKEVNLNS-----------------------VSSCTDRSLSPDLPDQIQDDTK-ETDNSTSSDKDTNNNENEEQNSC-TKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Match: lhx1b (LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]) HSP 1 Score: 143.665 bits (361), Expect = 1.615e-37 Identity = 94/255 (36.86%), Postives = 134/255 (52.55%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLV-SEIDPSVDETYCSD--NDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C C C LT +CF + C D+ R+ KC C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + + G D+N I T S+ S + DD SE P D+ C++ ++++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLSVLDRAWHAKCVQCCDCKCSLTDRCFSREGRLYCKNDFFRRYGTKCGGCAQGISPSDLVRKARS-KVFHLNCFTCIMCNKQLSTGEELYILDE-YKFVCKEDYLNNSN---GKDTNLLSI-------------------------TTCSDPSLSPESQDPQDDYKDSESGPMSDKETCNNENDEQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 228
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Match: lhx1b (LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]) HSP 1 Score: 143.665 bits (361), Expect = 1.615e-37 Identity = 94/255 (36.86%), Postives = 134/255 (52.55%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLV-SEIDPSVDETYCSD--NDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C C C LT +CF + C D+ R+ KC C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + + G D+N I T S+ S + DD SE P D+ C++ ++++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLSVLDRAWHAKCVQCCDCKCSLTDRCFSREGRLYCKNDFFRRYGTKCGGCAQGISPSDLVRKARS-KVFHLNCFTCIMCNKQLSTGEELYILDE-YKFVCKEDYLNNSN---GKDTNLLSI-------------------------TTCSDPSLSPESQDPQDDYKDSESGPMSDKETCNNENDEQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 228
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Match: lmx1ba (LIM homeobox transcription factor 1, beta a [Source:NCBI gene;Acc:554361]) HSP 1 Score: 119.398 bits (298), Expect = 4.316e-29 Identity = 79/253 (31.23%), Postives = 124/253 (49.01%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C++PI+D+F+ R+ D SWH++CL+C+ C LT C+ D++ C DY + KCS C I P++ V+ S++H +CF C C+++L GD + ++C+ DY K D S+ ++ +L D+ ++ G G DD DP R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 32 VCEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLLTMSCYSRDHKLYCKHDYQQLFATKCSGCLEKISPTELVMRALE-SVYHLSCFCCCVCERRLCKGDEFVLKE--GQLLCKTDYEREKDLASPDLSDSDKSEDEDL---DVKPEKGAGGQ------------------GKGSDD---SKDPR---------------RPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 242
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Match: gfm2 (G elongation factor, mitochondrial 2 [Source:Xenbase;Acc:XB-GENE-1002407]) HSP 1 Score: 145.591 bits (366), Expect = 4.233e-38 Identity = 88/254 (34.65%), Postives = 136/254 (53.54%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFG--DDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + C+ + L D S+ +++ D D++++ N +S+ + V+E ++D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIIDENKFVYCKLFWAGPSSPLVSVIDCSDPSLSPESQDPLQD-DAKDSESAN-------------------------ISDKEAGVNE----NDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 226
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Match: gfm2 (G elongation factor, mitochondrial 2 [Source:Xenbase;Acc:XB-GENE-1002407]) HSP 1 Score: 145.591 bits (366), Expect = 5.228e-38 Identity = 94/259 (36.29%), Postives = 139/259 (53.67%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDL-------VSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + ++ ++ K N F T + S S L DD +S+ + V+E ++D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY----------------------LNNNNNNNNAAKENSFISVTGSDPSL-SPESQDPLQDDAKDSESANISDKEAGVNE----NDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 233
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Match: klf2 (Kruppel-like factor 2 [Source:Xenbase;Acc:XB-GENE-485035]) HSP 1 Score: 144.821 bits (364), Expect = 7.960e-38 Identity = 97/259 (37.45%), Postives = 140/259 (54.05%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYD---DLVSEIDPSVD---ETYCSDN-DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I PSD V + +FH NCF C C+++L +G+ Y + VC+ DY S + L S ++S +S+ RS S +L D D E D S ET ++N +++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDFFRRFGTKCAGCSLGISPSDLVRKARN-KVFHLNCFTCMVCNKQLSTGEELYIIDE-NKFVCKEDYAS----------------ASSLKESSLNS---------------VSSCTDRSLSPDLQDPIQDESKETDHSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Match: LMX1B (LIM homeobox transcription factor 1, beta, gene 1 [Source:NCBI gene;Acc:100495130]) HSP 1 Score: 111.309 bits (277), Expect = 5.269e-26 Identity = 76/253 (30.04%), Postives = 125/253 (49.41%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C +PI+D+F+ R+ + SWH++CL+C C LT+ C+ D + C +DY + KCS C I P++ V+ ++H +CF C C+++L GD + ++C+ DY K + ++ SD ++ +G+V G + V++ SD+ K R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 55 VCEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDYQQLFAAKCSGCMEKIAPTEFVMRALE-CVYHLSCFCCCVCERQLRKGDEFVLKE--GQLLCKSDYEKEK----------DLLSSGSPDDSDSVKSDDEEGDV---------------KPGKCH----------VNQGKGSDDGKD-PRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 268
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Match: dcp1b (decapping mRNA 1B [Source:Xenbase;Acc:XB-GENE-877165]) HSP 1 Score: 108.997 bits (271), Expect = 2.373e-25 Identity = 72/253 (28.46%), Postives = 118/253 (46.64%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C I+D+F+ R+ D SWH+ C++C C L+ C+ + + C EDY + KC+ C + PS+ ++ S +++H CF C C+++L GD + ++C+ DY K E ++ L S E+ G ++ + +S G DP R + PRT + Q + KA+F ++ KP R++RE LA TGL++RV+QVWFQN Sbjct: 26 VCAGCGNTISDRFLLRVNDRSWHECCVKCAACLQILSGTCYYRNRQLYCKEDYDKLFATKCNSCLKTVLPSELIMRVLS-NVYHVACFFCCECERRLERGDEFVLKE--GQLLCRSDYEREK----------EMLSALSLTPSGSVKSEDEDG----------ASLQGKSDEGK---------DPK---------------RSKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLTVRVVQVWFQN 231
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Match: Lhx1 (LIM homeobox protein 1 [Source:MGI Symbol;Acc:MGI:99783]) HSP 1 Score: 147.902 bits (372), Expect = 5.563e-39 Identity = 93/255 (36.47%), Postives = 129/255 (50.59%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Match: Lhx5 (LIM homeobox protein 5 [Source:MGI Symbol;Acc:MGI:107792]) HSP 1 Score: 140.969 bits (354), Expect = 1.553e-36 Identity = 94/259 (36.29%), Postives = 139/259 (53.67%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDL---VSEIDPSVD---ETYCSDN-DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C L+ KCF + + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY ++ + L ++S +S+ RS S +L D L E D S ET ++N +++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARS-KVFHLNCFTCMVCNKQLSTGEELYVID-ENKFVCKDDY----------------LSSSSLKEGSLNS---------------VSSCTDRSLSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Match: Lmx1b (LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]) HSP 1 Score: 117.472 bits (293), Expect = 1.779e-28 Identity = 81/280 (28.93%), Postives = 132/280 (47.14%), Query Frame = 1 Query: 187 IKLEIASTNPEV----VLLKMTVP---ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 IK+E + P VLL P +C C +PI+D+F+ R+ + SWH++CL+C C LT+ C+ D + C +DY + KCS C I P++ V+ ++H CF C C+++L GD + ++C+ DY K + + S + E++ + +S G++ ++ S +D R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 5 IKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALEC-VYHLGCFCCCVCERQLRKGDEFVLKE--GQLLCKGDY-----------------EKEKDLLSSVSPDESD-------------SVKSEDEDGDM-----KPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 246
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Match: Lmx1b (LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]) HSP 1 Score: 116.316 bits (290), Expect = 4.645e-28 Identity = 77/264 (29.17%), Postives = 126/264 (47.73%), Query Frame = 1 Query: 223 VLLKMTVP---ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 VLL P +C C +PI+D+F+ R+ + SWH++CL+C C LT+ C+ D + C +DY + KCS C I P++ V+ ++H CF C C+++L GD + ++C+ DY K + + S + E++ + +S G++ ++ S +D R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 11 VLLGSDCPHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALEC-VYHLGCFCCCVCERQLRKGDEFVLKE--GQLLCKGDY-----------------EKEKDLLSSVSPDESD-------------SVKSEDEDGDM-----KPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 236
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Match: Lmx1a (LIM homeobox transcription factor 1 alpha [Source:MGI Symbol;Acc:MGI:1888519]) HSP 1 Score: 105.916 bits (263), Expect = 2.078e-24 Identity = 73/253 (28.85%), Postives = 115/253 (45.45%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C + I+D+F+ R+ D WH+QC++C C L + CF D + C Y + KC C I P++ V+ S++H +CF C C+++L GD + ++C+ DY + EL+ +++S S S DD S + + D R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 34 VCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYHYEKLFAVKCGGCFEAIAPNEFVMRAQK-SVYHLSCFCCCVCERQLQKGDEFVLKE--GQLLCKGDYE----------------KERELL-------------------SLVSPAASDSGKS---DDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 245
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Match: sp|P53411|LHX1_CHICK (LIM/homeobox protein Lhx1 OS=Gallus gallus OX=9031 GN=LHX1 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 9.235e-39 Identity = 93/255 (36.47%), Postives = 130/255 (50.98%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY +++ K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LNNSNTAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKETGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Match: sp|P29674|LHX1_XENLA (LIM/homeobox protein Lhx1 OS=Xenopus laevis OX=8355 GN=lhx1 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.357e-38 Identity = 94/260 (36.15%), Postives = 138/260 (53.08%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDY----NSLKHELF----GDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY N+ K F G D + ++ L DS+ N VS+ + ++E ++D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDYLNNNNAAKENSFISVTGSDPSLSPESQDPLQDDAKDSESAN----------------------------VSDKEAGINE----NDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 229
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Match: sp|P48742|LHX1_HUMAN (LIM/homeobox protein Lhx1 OS=Homo sapiens OX=9606 GN=LHX1 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.551e-38 Identity = 93/255 (36.47%), Postives = 129/255 (50.59%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Match: sp|Q90476|LHX1_DANRE (LIM/homeobox protein Lhx1 OS=Danio rerio OX=7955 GN=lhx1a PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.824e-38 Identity = 93/252 (36.90%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I P+D V S +FH NCF C C+++L +G+ Y + VC+ DY S + G DSN + DSQ+ + +V I+N + + N ++D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIIDE-NKFVCKDDYLSNTN---GKDSNLLSVTACSDPSLSPDSQDQLQDDVK---DAEIANLSDKETGNN------------------ENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 229
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Match: sp|P63007|LHX1_RAT (LIM/homeobox protein Lhx1 OS=Rattus norvegicus OX=10116 GN=Lhx1 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.892e-38 Identity = 93/255 (36.47%), Postives = 129/255 (50.59%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y + VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. TrEMBL
Match: A7S9E9 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g109857 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.408e-38 Identity = 96/257 (37.35%), Postives = 128/257 (49.81%), Query Frame = 1 Query: 241 VPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEI--RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 V C C PI DKF+ ++ D WH QC++C+ C C LT +CF + + C D+ R+ KCS C I P+D V L +FH +CF C+YC +++ +GD Y GS I C+ DY +H T +L ID D +Y D D + +RR PRTTIKA QL++LK+TF+ TPKPSR +REKLA+ TGL+MRVIQVWFQN Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHL-VFHVDCFVCSYCKRQITTGDELYYIGDGSFI-CRDDY-------------------------------------YHSHPT----------------NLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQN 203
BLAST of LIM homeobox 1b vs. TrEMBL
Match: A0A3Q2Q986 (LIM homeobox 1b OS=Fundulus heteroclitus OX=8078 PE=4 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.667e-38 Identity = 97/254 (38.19%), Postives = 129/254 (50.79%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCS-DNDKSCEI-RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C KPI D+F+ ++ D WH +C++C +C C LT KCF D C D+ R+ KC C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + N K + TT S S D SE P+ D+ C DND+ + +RR PRTTIKA QL++LKA F+ TPKP+R +RE+L+ TGL+MRVIQVWFQN Sbjct: 4 CADCEKPILDRFLLKVLDRPWHIKCVQCCECKCSLTEKCFSRDGRLYCKNDFFRRFGTKCGGCSQGILPSDLVRRAKS-KVFHLNCFTCMMCNKQLSTGEELYILDE-FKFVCKEDYQN----------------------------NNGKDTILLSVTTCSDPSLSPDSQDPQDDGKDSEGGPASDKEACGNDNDEQSAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQVWFQN 227
BLAST of LIM homeobox 1b vs. TrEMBL
Match: A0A146WV33 (LIM homeobox 1b OS=Fundulus heteroclitus OX=8078 PE=4 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 1.748e-38 Identity = 97/254 (38.19%), Postives = 129/254 (50.79%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCS-DNDKSCEI-RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C KPI D+F+ ++ D WH +C++C +C C LT KCF D C D+ R+ KC C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + N K + TT S S D SE P+ D+ C DND+ + +RR PRTTIKA QL++LKA F+ TPKP+R +RE+L+ TGL+MRVIQVWFQN Sbjct: 4 CADCEKPILDRFLLKVLDRPWHIKCVQCCECKCSLTEKCFSRDGRLYCKNDFFRRFGTKCGGCSQGILPSDLVRRAKS-KVFHLNCFTCMMCNKQLSTGEELYILDE-FKFVCKEDYQN----------------------------NNGKDTILLSVTTCSDPSLSPDSQDPQDDGKDSEGGPASDKEACGNDNDEQSAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQVWFQN 227
BLAST of LIM homeobox 1b vs. TrEMBL
Match: C4B860 (LIM homeobox protein 1 OS=Nematostella vectensis OX=45351 GN=lhx1 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 5.578e-38 Identity = 96/257 (37.35%), Postives = 128/257 (49.81%), Query Frame = 1 Query: 241 VPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEI--RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 V C C PI DKF+ ++ D WH QC++C+ C C LT +CF + + C D+ R+ KCS C I P+D V L +FH +CF C+YC +++ +GD Y GS I C+ DY +H T +L ID D +Y D D + +RR PRTTIKA QL++LK+TF+ TPKPSR +REKLA+ TGL+MRVIQVWFQN Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHL-VFHVDCFVCSYCKRQITTGDELYYIGDGSFI-CRDDY-------------------------------------YHSHPT----------------NLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQN 203
BLAST of LIM homeobox 1b vs. TrEMBL
Match: Q58F18 (LHX1 protein (Fragment) OS=Homo sapiens OX=9606 GN=LHX1 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 6.011e-38 Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN---DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R KC+ C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + + K N H TT S S DD +V + N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIIDENK-FVCKEDY--------------------------LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Match: lhx1a (LIM/homeobox protein Lhx1 [Source:NCBI gene;Acc:103025442]) HSP 1 Score: 147.132 bits (370), Expect = 7.832e-39 Identity = 91/252 (36.11%), Postives = 136/252 (53.97%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + + C D+ R+ KC+ C I P+D V S +FH NCF C C+++L +G+ Y + VC+ DY S + G D+N + DSQ+ + +V +S+ + S+ +D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPNDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKDDYLSNSN---GKDTNLLSVTACSDPSLSPDSQDPLQDDVKDSEIAALSDKEAPSNEA---------------------DDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 229
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Match: lhx1b (LIM/homeobox protein Lhx1-like [Source:NCBI gene;Acc:103026395]) HSP 1 Score: 144.436 bits (363), Expect = 7.264e-38 Identity = 94/256 (36.72%), Postives = 135/256 (52.73%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQI---NKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDND-KSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C C C LT KCF + C D+ R+ KC+ C I P+D V + +FH NCF C C+++L +G+ Y S +C+ DY S L D + + ++ L D E+ K S +G L D ET ++ND ++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHTKCVQCCDCKCNLTEKCFSREGRLYCRTDFFRRFGTKCAGCSQVISPTDLVRRARN-KVFHLNCFTCIMCNKQLSTGEELYILEE-SKFLCKEDYFSNNSPL-KDSTQLSAVTACSEPSLSPDPQDVHEDGK----------------DSEAGQLSD----------KETGSTENDEQTSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Match: lhx5 (LIM/homeobox protein Lhx5 [Source:NCBI gene;Acc:103047421]) HSP 1 Score: 138.658 bits (348), Expect = 6.422e-36 Identity = 91/261 (34.87%), Postives = 134/261 (51.34%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDND---------KSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C LT +CF + + C ED+ R+ KC+ C I P D V +FH NCF C C+++L +G+ Y + VC+ DY T + +++S +S+ RS S +L + + D + CSD D +C+ +RR PRTTIKA QL++LKA F TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCARPILDRFLLNVLDRAWHAECVQCCECGRALTERCFSREGKLYCREDFIRRFGTKCAGCLQGISPGDLVRRARG-KVFHLNCFTCAACNKQLSTGEELYVIDE-NKFVCKEDYTG-----------------TSIREVNLNS---------------VSSCTDRSLSPDLPEPGPDDTK-ETDNSTCSDKDTNNNENEEQGACQ-KRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQN 228
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Match: lmx1ba (LIM homeobox transcription factor 1, beta a [Source:NCBI gene;Acc:554361]) HSP 1 Score: 115.931 bits (289), Expect = 2.006e-28 Identity = 79/253 (31.23%), Postives = 121/253 (47.83%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C +PI D+F+ R+ + SWH++CL+C C LT C+ D + C DY R KCS C I P++ V+ S++H CF C C+++L GD + S ++C+ DY K + +N SD S++ + + + SG + SD+ K R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 30 VCAGCQRPIADRFLLRVNESSWHEECLQCAVCQQPLTMSCYCRDRKVYCKHDYQRLFATKCSGCLEKIAPTEFVMRALK-SVYHLGCFCCCVCERQLCKGDEFVLKD--SQLLCKKDYEREK----------DLLNAISPEMSDSKSEDED------------VDVKPEKGSGG--------------QNKGSDDSKDSR-RPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 242
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Match: lmx1a (LIM homeobox transcription factor 1-alpha-like [Source:NCBI gene;Acc:103031184]) HSP 1 Score: 113.235 bits (282), Expect = 3.549e-27 Identity = 80/254 (31.50%), Postives = 119/254 (46.85%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDY-NSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C++PI ++F+ R+ WH++C RC +C L C+ DN+ C DY R +C C I P++ V++ S ++FH CF C+ C +L GDR G ++C DY +SL D S+ + E+ +GN+ K T GN D E R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 22 VCAGCSRPIRERFLLRVHCGVWHERCARCCECGELLKKSCYSRDNKLYCRTDYQRLFLVRCRACTEVISPAELVMHAGS-AVFHLRCFCCSVCSCRLQKGDRCVLV--GDRLLCTRDYQHSLSSPTTSDSGR-----------SEDEDDEDEEGNL--KMT----------GDGNTAGDG--------------------EKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 229
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009847.1 (pep scaffold:Pmarinus_7.0:GL481168:3356:14379:1 gene:ENSPMAG00000008904.1 transcript:ENSPMAT00000009847.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 87.0409 bits (214), Expect = 1.858e-19 Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1 Query: 850 RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +RR PRTTIKA QL++L+A F+ TPKPSR +RE+LA+ TGL+MRVIQVWFQN Sbjct: 26 KRRGPRTTIKAKQLETLRAAFAATPKPSRHVREQLAQETGLNMRVIQVWFQN 77
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Match: lmo4b (LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570]) HSP 1 Score: 62.7734 bits (151), Expect = 7.379e-12 Identity = 36/120 (30.00%), Postives = 57/120 (47.50%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQ---LTSKCFELDNEFLCPEDYSRX-XXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFD 597 C C I D+F+ D WH +CL+C+ C Q L + C+ LC +DY R G P+ +++ +++H CF C C +L+ GDR++ Y GS + C+ D Sbjct: 18 CAGCGGKIADRFLLYSMDCYWHSRCLKCSCCQAQLGDLGTSCYTRQGMILCRDDYIRMFGSSGACNACGQSIPASELVMKTQGNVYHLKCFACATCRTRLVPGDRFH-YVNGS-LFCEHD 135
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011272.1 (pep scaffold:Pmarinus_7.0:GL495005:1654:1833:1 gene:ENSPMAG00000010245.1 transcript:ENSPMAT00000011272.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 58.9214 bits (141), Expect = 1.050e-11 Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1 Query: 241 VPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSR 411 +P C CN+ I D+FI ++ D +WH +CL+C C Q++ KCF D C ED+ R Sbjct: 4 IPQCAGCNQHILDRFILKVLDRAWHSKCLKCCDCQAQMSDKCFYRDGSVYCKEDFFR 60
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002189.1 (pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gene:ENSPMAG00000001979.1 transcript:ENSPMAT00000002189.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 62.003 bits (149), Expect = 6.691e-11 Identity = 43/172 (25.00%), Postives = 69/172 (40.12%), Query Frame = 1 Query: 490 IFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 I+H CFRC C ++L+ GD + G ++C+ D + G + + + + RS SG + S +K+ +R T + QL +L+ ++ P+P M+E+L E TGLS RVI+VWFQN Sbjct: 27 IYHMECFRCETCSRQLLPGDEFALRD-GGGLLCRADQH---------HGGGGGGGAGGAGGGAGGGGGGLLGTALTRPGSPVHSSRSLHLSGGIP----------------SGPEKATRVR-----TVLNEKQLQTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 167
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332]) HSP 1 Score: 56.225 bits (134), Expect = 8.977e-10 Identity = 35/131 (26.72%), Postives = 61/131 (46.56%), Query Frame = 1 Query: 217 EVVLLKMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEF---LCPEDYSRXXXX-XXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFD 597 EV+ + + +C C +PI+D+++ + + WH+ CL C+ C C+L L + LC DY R + G + ++ ++H CF+C C + GDRY + S I+C+ D Sbjct: 19 EVLRMPPMMLMCGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVN--SDIICEQD 147
BLAST of LIM homeobox 1b vs. Ensembl Yeast
Match: PHO2 (Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000002264]) HSP 1 Score: 47.7506 bits (112), Expect = 2.806e-6 Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = 1 Query: 853 RRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +R RT K LD LK F I P PS R+K+++ G+ + +++WFQN Sbjct: 77 QRPKRTRAKGEALDVLKRKFEINPTPSLVERKKISDLIGMPEKNVRIWFQN 127
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Match: LHX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E9]) HSP 1 Score: 150.214 bits (378), Expect = 1.947e-42 Identity = 96/257 (37.35%), Postives = 128/257 (49.81%), Query Frame = 1 Query: 241 VPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEI--RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 V C C PI DKF+ ++ D WH QC++C+ C C LT +CF + + C D+ R+ KCS C I P+D V L +FH +CF C+YC +++ +GD Y GS I C+ DY +H T +L ID D +Y D D + +RR PRTTIKA QL++LK+TF+ TPKPSR +REKLA+ TGL+MRVIQVWFQN Sbjct: 2 VQQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYGTKCSGCDQGISPNDMVRRAKHL-VFHVDCFVCSYCKRQITTGDELYYIGDGSFI-CRDDY-------------------------------------YHSHPT----------------NLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQN 203
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Match: EDO46073 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR95]) HSP 1 Score: 93.9745 bits (232), Expect = 4.054e-21 Identity = 78/261 (29.89%), Postives = 113/261 (43.30%), Query Frame = 1 Query: 232 KMTVPICYKCNKPINDKFITRIR-DHSWHDQCLRCNQCSCQLTSKC--FELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 K V +C C I+D++I R+ D WH CL+C C L KC F + + C DY R KC+KC +D V+ + I+H +CFRC C ++L+ GD + G + C+ D HE+ + Q N G RS S G + PS +T D+ + RT + QL +L+ ++ P+P M+E+L E TGLS RVI+VWFQN Sbjct: 11 KRRVSMCVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDEKCTCFVREGKTYCKRDYVRLFGTKCAKCSLNFSKNDFVMRARN-KIYHIDCFRCVACSRQLVPGDEFALREDG--LFCKAD-----HEIVEKATATAQATHVR-----------NNGQ------------RSSQSGGQTNGQTTPDSTPSKRKT-----DRPTRV-----RTVLNEKQLHTLRTCYNANPRPDAMMKEQLVEMTGLSPRVIRVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Match: EDO43354 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYP5]) HSP 1 Score: 92.0485 bits (227), Expect = 4.373e-21 Identity = 71/256 (27.73%), Postives = 111/256 (43.36%), Query Frame = 1 Query: 244 PICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSK--CFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C I ++F D WH CL+C+ C +L ++ CF D LC EDY R+ K S +++ ++H NCF C+ C + L +G+ Y G I C+ DY L E + N +IN +KG + I + S ++ G D E+ D R + RT+ K QL ++K F++ P + ++L++ TGL+ RV+QVWFQN Sbjct: 7 AVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGE--YFGMRGIRIYCKEDYEELLRE---ESRNPTKINSL------------SKGRPRKR--RIATAIESITNLGYDLSDRPGELTTGADG------------RPKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQVWFQN 231
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Match: EDO34370 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPK5]) HSP 1 Score: 85.5001 bits (210), Expect = 1.937e-18 Identity = 70/254 (27.56%), Postives = 108/254 (42.52%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLT--SKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C I D+++ ++ +WH +CL+C CS +L + C+ D + C DY+R+ KC++C I +D V + ++H CF C+ C ++L +G+ + G V+ C+ Y L D E + VF P VD ++ KS + + RTT QL L+A F+I P Q E++A+ TGLS RV QVWFQN Sbjct: 28 CVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYARQFGTKCARCGRSIHANDWVRRAKNC-VYHLACFACDNCKRQLSTGEE-FALKDGHVL-CKLHY---------------------LEALDTSPAERDYQEVF---------------------------SPDVDGDDSPNSLKSGRHKAKRVRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Match: EDO37316 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG43]) HSP 1 Score: 62.7734 bits (151), Expect = 8.710e-12 Identity = 35/132 (26.52%), Postives = 61/132 (46.21%), Query Frame = 1 Query: 238 TVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQL---TSKCFELDNEFLCPEDYSRXXX-XXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHEL 621 ++ +C C + I D+F+ D WH CL+C+ C +L + C+ LC DY R + P+ +++ ++H +CF C C +L+ GDR++ + G + D N LK +L Sbjct: 15 SMRVCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVN-GRLFCENDDPNLLKQQL 145
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Match: lhx1b (LIM/homeobox protein Lhx1 [Source:NCBI gene;Acc:101155626]) HSP 1 Score: 149.828 bits (377), Expect = 8.197e-40 Identity = 96/254 (37.80%), Postives = 127/254 (50.00%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCS-DNDKSCEI-RRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C KPI D+F+ ++ D WH +C++C +C C LT KCF D C D+ R+ KC C I PSD V S +FH NCF C C+++L +G+ Y VC+ DY + N K + TT S S D SE D+ C DND+ + +RR PRTTIKA QL++LKA F+ TPKP+R +RE+L+ TGL+MRVIQVWFQN Sbjct: 4 CTSCEKPILDRFLLKVLDRPWHVKCVQCCECKCSLTEKCFSRDGRLYCKNDFFRRFGTKCGGCSQGILPSDLVRRAKS-KVFHLNCFTCVMCNKQLSTGEELYILDE-FKFVCKEDYQN----------------------------SNGKDTILLSVTTCSEPSLSPDSQDPQDDGKDSESGHLSDKDACGNDNDEQSAVGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLSRETGLNMRVIQVWFQN 227
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Match: lhx1a (LIM homeobox 1 [Source:NCBI gene;Acc:100049230]) HSP 1 Score: 145.591 bits (366), Expect = 2.298e-38 Identity = 97/256 (37.89%), Postives = 139/256 (54.30%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDY---NSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDN-DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C +PI D+F+ + D +WH +C++C +C C LT KCF + C D+ R+ KC C I P+D V S +FH NCF C C+++L +G+ Y + VC+ DY +S+K D+N + DSQ+ + +V K T I + L D ET ++N D++ +RR PRTTIKA QL++LKA F+ TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGRLYCKNDFFRRFGTKCGGCSQGISPNDLVRRARS-KVFHLNCFTCMMCNKQLSTGEELYIID-ENKFVCKEDYLSNSSVK------DTNLLSVTACSDPSLSPDSQDPLQDDVVLKDTEIAA----------LSD----------KETVNNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQN 231
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Match: lhx5 (LIM homeobox 5 [Source:NCBI gene;Acc:101166400]) HSP 1 Score: 144.821 bits (364), Expect = 3.954e-38 Identity = 94/260 (36.15%), Postives = 136/260 (52.31%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYD---DLVSEIDPSVDETYCSDN----DKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C +PI D+F+ + D +WH +C++C C+C LT KCF D + C D+ R+ KC+ C I P+D V S +FH NCF C C+++L +G+ Y + VC+ DY S G++ +S+ RS S +L D D + E D S ++N +++ +RR PRTTIKA QL++LKA F TPKP+R +RE+LA+ TGL+MRVIQVWFQN Sbjct: 4 LCAGCERPILDRFLLNVLDRAWHAKCVQCCDCNCNLTEKCFSRDGKLYCKMDFFRRFGTKCAGCLQGISPNDLVRKARS-KVFHLNCFTCMVCNKQLSTGEELYVIDE-NKFVCKEDYLS-------------------------------PGSIKEVSLNSVSSCTDRSLSPDLPDPTQDDIKETDNSTSSDKETNNIENEEQNSGAKRRGPRTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQVWFQN 230
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Match: lmx1a (LIM homeobox transcription factor 1-alpha-like [Source:NCBI gene;Acc:101175472]) HSP 1 Score: 114.39 bits (285), Expect = 1.462e-27 Identity = 79/253 (31.23%), Postives = 116/253 (45.85%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C + I D+F+ R+ D WH++C+RC C L + CF L+ + C DYS C C I PS+ V+ + ++FH +CF C+ C L +GDR G ++ + DY+ L+ D I K S D +E V K G +D +N R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 15 VCVGCQRRITDRFLLRVADGLWHERCVRCAACGDALRNSCFLLERKLYCKRDYSSLFAVHCGGCAEAISPSELVMRAGA-AVFHLSCFTCSVCFHHLKTGDRCILQD-GRLLCAREDYHQLQASPPSSD-----IGK-----SGDDEEEEPSAKVMDK-------------PGRSHD---------------QENK-----RPKRPRTILTTQQRRTFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 222
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Match: lmx1bb (LIM homeobox transcription factor 1 beta [Source:NCBI gene;Acc:101159592]) HSP 1 Score: 114.005 bits (284), Expect = 8.661e-27 Identity = 76/253 (30.04%), Postives = 118/253 (46.64%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C +PI+D+F+ R+ D SWH++CL+C C LT+ C+ + + C DY + KCS C I P++ V+ ++H NCF C CD++L GD + ++C+ DY K L + K++ DI ++ + + G DP R + PRT + Q + KA+F ++ KP R++RE LA TGLS+RV+QVWFQN Sbjct: 119 VCEGCQRPISDRFLMRVNDSSWHEECLQCAVCQQPLTTSCYLRERKLYCKHDYQQLFATKCSGCMEKIAPTEFVMRALE-CVYHLNCFCCCVCDRQLRKGDEFVLKE--GQLLCKVDYEREKDLLSSVSPDDSDSEKSDDEELDIKPEKG-------------IGSQGKGDDGK---------DPR---------------RPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQN 331
BLAST of LIM homeobox 1b vs. Planmine SMEST
Match: SMESG000022856.1 (SMESG000022856.1) HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0 Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 1 Query: 235 MTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQNXXXXXXXXXXXXXXXXXXYRFSIQNDITRSENLSNVPVNSKFVQRNLDHQDVHIHLNAVSRNYEVISNSQTEQMNDGRYASNWFMNRSVDV 1278 MTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRKKFKKCSKCKGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQNRRSKERRSKLSSQRKLEKYRFSIQNDITRSENLSNVPVNSKFVQRNLDHQDVHIHLNAVSRNYEVISNSQTEQMNDGRYASNWFMNRSVDV Sbjct: 1 MTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEFLCPEDYSRKKFKKCSKCKGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQNRRSKERRSKLSSQRKLEKYRFSIQNDITRSENLSNVPVNSKFVQRNLDHQDVHIHLNAVSRNYEVISNSQTEQMNDGRYASNWFMNRSVDV 348
BLAST of LIM homeobox 1b vs. Planmine SMEST
Match: SMESG000039808.1 (SMESG000039808.1) HSP 1 Score: 118.242 bits (295), Expect = 8.474e-29 Identity = 89/269 (33.09%), Postives = 127/269 (47.21%), Query Frame = 1 Query: 241 VPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFEL--DNEFL-CPEDY-SRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKF-----TTIISNYRSRS-----SSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +P C C PI DK + I D WH+ C+ CN C L C+E D +++ C D+ +K+ KC C+ I PSD V+ IFH +CF+C+ C KL SGDRY ++ F Y++ N L++ + + + N GN+ + I NY +S S N + D + S++ C + PRT + SQ KA F PKPSR++RE LA TGLS+RV+QVWFQN Sbjct: 1 MPFCEACGNPIIDKHVLLISDRFWHENCVICNCCGIPLIDICYEFKADKQYIFCRTDFIKKKQSSKCQSCQMLIQPSDLVIKLHLDLIFHYSCFKCSQCGIKLRSGDRYVLTKDYVIVCVAFCYHATGSSSI------NSTNSNVLLYIEQNHKINRAGNIDNSINVTSGAIIDDNYMMKSHLSPNSRCNQFSDFTTSFLNSLNNGMCPGGG------LKRPRTILNPSQRRKFKAAFDSNPKPSRKLRENLASETGLSVRVVQVWFQN 257
BLAST of LIM homeobox 1b vs. Planmine SMEST
Match: SMESG000005304.1 (SMESG000005304.1) HSP 1 Score: 100.138 bits (248), Expect = 1.881e-22 Identity = 75/259 (28.96%), Postives = 112/259 (43.24%), Query Frame = 1 Query: 232 KMTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFEL-DNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDIDSQENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 K+ P C CN INDK++ + D WH C C+ C L CF L DN+ C Y + F + +V ++H CF C+ C Q L GD + + P S++VC+ DY S + ++ +N + FS DS E + K I Y + + S D S + Y + + ++ + PRTT+ Q L F P+ + RE LAE L ++V+QVWFQN Sbjct: 28 KVDNPSCTGCNGVINDKYLFSLNDTFWHKSCALCSICEEVLEESCFMLKDNKLFCRNHYYKSSFATKCSGCNLPMQTHEVAMHALNRVYHVTCFACSCCKQLLQRGDEFILHGPESLLVCRADYESGAYLHCSSNT----LNDCDQSFSHKDSNETSM-----KELQISYQYHEDGTGKH------SSTDSSNGKQYNYFSSYNSKVSSKRPRTTLTFDQKRRLMVFFKTCQNPNYKQREALAEEMKLPLKVVQVWFQN 271
BLAST of LIM homeobox 1b vs. Planmine SMEST
Match: SMESG000001774.1 (SMESG000001774.1) HSP 1 Score: 97.0561 bits (240), Expect = 3.998e-22 Identity = 75/262 (28.63%), Postives = 119/262 (45.42%), Query Frame = 1 Query: 247 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQL--TSKCFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTEL--IFSDIDSQ-----ENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 +C C I DK+ R +H WH CL+C+ C L T+ C++ + F C DY R ++ +++ S+FH +CF C C ++L SG+ Y G+++ CQ ++I K+ + IFS I S +NN+ F +I S + R G L D++ I P + K ++ RT+ K Q+ ++ FS+ P + + L+E TGLS RV+QVWFQN Sbjct: 11 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGE--YFLLNGNILFCQ-----------------DEIRKSSISTIFSGIQSDFRLGLQNNQS----LFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISK-----QKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQN 244
BLAST of LIM homeobox 1b vs. Planmine SMEST
Match: SMESG000010916.1 (SMESG000010916.1) HSP 1 Score: 92.4337 bits (228), Expect = 6.691e-20 Identity = 80/273 (29.30%), Postives = 121/273 (44.32%), Query Frame = 1 Query: 250 CYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSK--CFELDNEFLCPEDYSRXXXXXXXXXXGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTELIFSDI-DSQENNKGNV-----FHKFTTIISNYRSRSSSGNLYDDLV-----------SEIDP--SVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQN 1005 C C I D+F + D WH CLRC C +L S+ CF D C EDYSR +KC G D+++ +FH CF C C + L G+ Y G + CQ DD IN +E ++ + N++ +V FH + + + Y S + + + ++ SE+D E +C N R++ RT+ K QL ++K+ F++ P + + L+E TGLS RV+QVWFQN Sbjct: 31 CAGCKSKITDRFFLKAADKMWHVNCLRCWICHVELHSEMSCFTRDGVVYCKEDYSRLFGRKCCIRCGVKITYDELVMRVKNLVFHVTCFCCVQCGRMLNPGE--YFGLKGLLPFCQ------------DDLIKNPINMSEDFIHNLQNGLTNSQASVPHLFLFHPLSRLNNFYHSPLNDSHNFHSIIPKVRGKKKRKGSELDNLYETSEDFCIGNAS----RQKRMRTSFKHHQLRAMKSYFALNHNPDAKDLKSLSEKTGLSKRVLQVWFQN 285 The following BLAST results are available for this feature:
BLAST of LIM homeobox 1b vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of LIM homeobox 1b vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of LIM homeobox 1b vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of LIM homeobox 1b vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of LIM homeobox 1b vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30014138 ID=SMED30014138|Name=LIM homeobox 1b|organism=Schmidtea mediterranea sexual|type=transcript|length=1560bpback to top protein sequence of SMED30014138-orf-1 >SMED30014138-orf-1 ID=SMED30014138-orf-1|Name=SMED30014138-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=349bp MTVPICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQLTSKCFELDNEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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