Estrella

Overview
NameEstrella
Smed IDSMED30014079
Length (bp)1248
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Estrella (SMED30014079) t-SNE clustered cells

Violin plots show distribution of expression levels for Estrella (SMED30014079) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Estrella (SMED30014079) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Estrella (SMED30014079) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30014079

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
cephalic gangliaSMED30014079SMESG000041686.1 dd_Smed_v4_1866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30014079SMESG000041686.1 dd_Smed_v4_1866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30014079SMESG000041686.1 dd_Smed_v4_1866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30014079SMESG000045572.1 SMESG000041686.1 Contig49700newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30014079SMESG000045572.1 SMESG000041686.1 Contig49700uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
parenchymal cellSMED30014079SMESG000041686.1 dd_Smed_v6_1866_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Estrella vs. TrEMBL
Match: A0A1Z1R2Q3 (Estrella OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.887e-97
Identity = 157/358 (43.85%), Postives = 236/358 (65.92%), Query Frame = 3
Query:   54 LFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKL 1127
            +F + L      AV   N+LNLV+VNIS+ +YK+LM +KDN+L+ASPLA+LDV LLKK+ CYKNIR++ W+  +P+IFW D YM  +  S++K + L+NF  +K  ILPPSG  ++R+ WRR+ + +  N  I +D+SW     DYVLP   +FL+EF  + +   LCV+TKN+LLN+S Q  E  I+F +   +  NI ++ IKI +I++VKM+NES C      +C VS ++AEKW+YDVS  +M+NV    L+LQ DI++ V +YLCK+++ I  + +K ++++ K   +E+AC+IP  +   +   C  +Y  YG  R   +E L+YG  V++KL    +Y+E SQFSI + KL
Sbjct:    8 IFTLGLILATCGAVSKLNRLNLVQVNISNIIYKQLMTTKDNVLAASPLAILDVNLLKKHKCYKNIRTNSWSFMMPIIFWDDSYMTNVANSIQKMSKLKNFVSEKPFILPPSGFRSYRLNWRRD-LNDVFNNPIRIDSSWYPANIDYVLPKWQNFLIEFVSDQNYTGLCVETKNRLLNESFQSFEFVIEFARNVRKTNNIQEVVIKIKDIQTVKMFNESGCDMGQSSRCTVSSDYAEKWAYDVSVEIMKNVSSNSLSLQSDIYEKVLQYLCKDKVPIESVGVKRLKKIDK---DELACQIPQNM--TQTNRCENRY-YYGSYR---YECLNYGENVVTKLLLNDAYSEVSQFSIPITKL 355          
BLAST of Estrella vs. TrEMBL
Match: A0A1P8CUY3 (Estrella/neura-1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.027e-58
Identity = 96/230 (41.74%), Postives = 151/230 (65.65%), Query Frame = 3
Query:  273 IPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKL 962
            +P+IFW D YM  +  S++K + L+NF  +K  ILPPSG  ++R+ WRR+ + +  N  I +D+SW     DYVLP   +FL+EF  + +   LCV+TKN+LLN+S Q  E  I+F +   +  NI ++ IKI +I++VKM+NES C      +C VS ++AEKW+YDVS  +M+NV    L+LQ DI++ V +YLCK+++ I  + +K ++++ K   +E+AC+IP  +
Sbjct:    2 MPIIFWDDSYMTNVANSIQKMSKLKNFVSEKPFILPPSGFRSYRLNWRRD-LNDVFNNPIRIDSSWYPANIDYVLPKWQNFLIEFVSDQNYTGLCVETKNRLLNESFQSFEFVIEFARNVRKTNNIQEVVIKIKDIQTVKMFNESGCDMGQSSRCTVSSDYAEKWAYDVSVEIMKNVSSNSLSLQSDIYEKVLQYLCKDKVPIESVGVKRLKKIDK---DELACQIPQNM 227          
BLAST of Estrella vs. Planmine SMEST
Match: SMESG000041686.1 (SMESG000041686.1)

HSP 1 Score: 773.467 bits (1996), Expect = 0.000e+0
Identity = 375/376 (99.73%), Postives = 376/376 (100.00%), Query Frame = 3
Query:    9 KFELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW 1136
            +FELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW
Sbjct:  298 EFELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW 673          
BLAST of Estrella vs. Planmine SMEST
Match: SMESG000041686.1 (SMESG000041686.1)

HSP 1 Score: 773.467 bits (1996), Expect = 0.000e+0
Identity = 375/376 (99.73%), Postives = 376/376 (100.00%), Query Frame = 3
Query:    9 KFELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW 1136
            +FELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW
Sbjct:  306 EFELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKLDNW 681          
BLAST of Estrella vs. Planmine SMEST
Match: SMESG000026791.1 (SMESG000026791.1)

HSP 1 Score: 300.442 bits (768), Expect = 2.408e-99
Identity = 155/358 (43.30%), Postives = 234/358 (65.36%), Query Frame = 3
Query:   54 LFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNEVISKLNPYQSYNENSQFSITVVKL 1127
            +F + L      AV   N+LNLV+VNIS+ +YK+LM +KDN+L+ASPLA+LDV LLKK+ CYKNIR++ W+  +P+IFW D YM  +  S++K + L+NF  +K  ILPPSG  ++R+ WRR+ + +  N  I +D+SW     DYVLP   +FL+E   + +   LCV+TKN+LLN+S Q  E  I+F +   +  NI ++ IKI +I++VKM+NES C      +C VS ++AEKW+YDVS  +M+N     L+LQ DI++ V +YLCK+++ I  + +K ++++ K   +E+AC+IP  +   +   C  +Y  YG  R   +E L+YG  V++KL    +Y+E SQFSI + KL
Sbjct:    8 IFTLGLILATCGAVSKLNRLNLVQVNISNIIYKQLMTTKDNVLAASPLAILDVNLLKKHKCYKNIRTNSWSFMMPIIFWDDSYMTNVANSIQKMSKLKNFVSEKPFILPPSGFRSYRLNWRRD-LNDVFNNPIRIDSSWYPANIDYVLPKWQNFLIELVSDQNYTGLCVETKNRLLNESFQSFEFVIEFARNVRKTNNIQEVVIKIKDIQTVKMFNESGCDMGQSSRCTVSSDYAEKWAYDVSVEIMKNFSSNSLSLQSDIYEKVLQYLCKDKVPIESVGVKRLKKIDK---DELACQIPQNM--TQTNRCENRY-YYGSYR---YECLNYGENVVTKLLLNDAYSEVSQFSIPITKL 355          
BLAST of Estrella vs. Planmine SMEST
Match: SMESG000013666.1 (SMESG000013666.1)

HSP 1 Score: 145.976 bits (367), Expect = 4.476e-40
Identity = 86/304 (28.29%), Postives = 161/304 (52.96%), Query Frame = 3
Query:   54 LFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKKLMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYMERIMASVKKGNLLRNFTGDK---VSILPPSGVIAFRITWRRNYIENSENTNISLDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISEMTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEFAEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTVRRLSKGIDNE-MACKIP 953
            + +I +Y +  +    F     ++VN+S+  Y KL      I SA PL +LDV  L+ + C++N  +  + L IP+IFW   Y+++I       NL    T D      ILPP+GV +F+I WRR       + ++ LDTS+Q +  +Y LPM H+F++EF++    K+LC + KN L+ + +Q  E+ ++F+     +  IP I IK+++     +    +C+   +  C++    A+ +SY ++  +++ +   ++NLQ  I+    + LC  ++    I  + V   ++ ++++ + C IP
Sbjct:    7 VLVIIIYTLTGKTQSKFPPT--IQVNLSNVAYVKLEQISSKIFSAPPLVILDVVKLRNFTCFRNFYTMKYTLGIPIIFWNYSYLQKI------NNLKYLMTTDTNITTKILPPTGVSSFQINWRR---PGKSSEHMELDTSFQRSYLNYFLPMSHTFIVEFNEGNTSKQLCNEIKNSLITEPIQRQELVVNFKGIKTIEEKIPSINIKLSDFEIEPIL---SCRNGYDSNCYIYLNSAKTFSYLLAINVLKRMSKYNINLQMQIYSRALDELCGIKVIYSSISNQRVVGTAEVVNSQILVCSIP 296          
The following BLAST results are available for this feature:
BLAST of Estrella vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Z1R2Q31.887e-9743.85Estrella OS=Schmidtea mediterranea OX=79327 PE=2 S... [more]
A0A1P8CUY36.027e-5841.74Estrella/neura-1 (Fragment) OS=Schmidtea mediterra... [more]
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BLAST of Estrella vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Estrella vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000041686.10.000e+099.73SMESG000041686.1[more]
SMESG000041686.10.000e+099.73SMESG000041686.1[more]
SMESG000026791.12.408e-9943.30SMESG000026791.1[more]
SMESG000013666.14.476e-4028.29SMESG000013666.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30014079 ID=SMED30014079|Name=Estrella|organism=Schmidtea mediterranea sexual|type=transcript|length=1248bp
CGTAAATGAAGTTTGAACTTTTATTATCGAAAATGATTCCTGGAATTAAA
TGTCTGTTTTTGATATTTCTCTATTTCATGAATTCTGAAGCCGTAAAAGA
TTTTAATAAGCTGAATTTAGTGCGAGTCAACATTTCTGATTTTGTTTATA
AAAAGTTAATGATAAGTAAAGATAATATTTTGTCAGCTTCACCTTTGGCA
TTACTGGATGTTAAATTATTGAAAAAATATCATTGCTACAAAAATATTCG
AAGTAGTTTGTGGGCGCTTCCAATTCCTGTTATTTTCTGGACTGATTTGT
ACATGGAAAGAATTATGGCCAGTGTAAAAAAAGGAAATTTACTAAGAAAC
TTTACTGGTGATAAAGTGTCGATTTTGCCACCTTCGGGTGTTATTGCGTT
TAGGATAACTTGGCGACGGAATTATATTGAAAATTCCGAAAATACAAATA
TTTCCTTGGATACTTCATGGCAAGATACGCAAACCGACTACGTATTACCC
ATGCGTCATAGTTTTTTGATGGAGTTTAGTGATAATGGTGACGGTAAAAA
GTTATGTGTTGATACAAAGAATAAACTGCTAAATGATTCGATGCAAATCT
CTGAAATGACAATAGATTTTCAGAAGACAGCTGGTCGGAAAAGAAATATT
CCTGATATTCAAATAAAAATTAATAATATTCGATCAGTTAAAATGTACAA
TGAATCAAACTGTAAAACACAGTCAGAAGATAAATGTTTTGTGTCGAAAG
AATTTGCCGAAAAGTGGTCATACGATGTTAGCACTCGAATGATGGAGAAT
GTAGAAATTATTCATTTGAATTTGCAAAAGGATATATTCGATGCGGTTTT
TGAATATTTATGTAAAAATCGAATGTCAATTTTTGAGATCGAGTTGAAAA
CTGTCAGGCGTTTATCCAAGGGAATAGACAATGAAATGGCTTGTAAAATA
CCAAATAAGTTATATGTAATCAAACCAAAGCCATGTTTACCGAAATATGA
TAGATATGGTTATCTACGGGTATGTCCGCACGAACTTCTAGATTATGGAA
ATGAGGTGATATCAAAATTAAACCCTTATCAATCTTATAATGAAAACAGT
CAATTTTCTATTACCGTTGTGAAACTTGACAATTGGTAATTCTATTATTT
GTCATCACGTTAATTTCTTTTTCATTTACCTATTTCACAGTATTCATTGT
TCTTTAATGTTTAGAAGAATTAATAAAAATCATTTCTAGATCGGAAGA
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protein sequence of SMED30014079-orf-1

>SMED30014079-orf-1 ID=SMED30014079-orf-1|Name=SMED30014079-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=378bp
MKFELLLSKMIPGIKCLFLIFLYFMNSEAVKDFNKLNLVRVNISDFVYKK
LMISKDNILSASPLALLDVKLLKKYHCYKNIRSSLWALPIPVIFWTDLYM
ERIMASVKKGNLLRNFTGDKVSILPPSGVIAFRITWRRNYIENSENTNIS
LDTSWQDTQTDYVLPMRHSFLMEFSDNGDGKKLCVDTKNKLLNDSMQISE
MTIDFQKTAGRKRNIPDIQIKINNIRSVKMYNESNCKTQSEDKCFVSKEF
AEKWSYDVSTRMMENVEIIHLNLQKDIFDAVFEYLCKNRMSIFEIELKTV
RRLSKGIDNEMACKIPNKLYVIKPKPCLPKYDRYGYLRVCPHELLDYGNE
VISKLNPYQSYNENSQFSITVVKLDNW*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0003116parenchymal cell